Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030166.t1 | XP_003609884.2 | 94.9 | 1191 | 47 | 4 | 1 | 1177 | 1 | 1191 | 0.00E+00 | 2272.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030166.t1 | F4I366 | 66.3 | 1174 | 363 | 9 | 24 | 1174 | 15 | 1178 | 0.0e+00 | 1557.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030166.t1 | G7JR14 | 94.9 | 1191 | 47 | 4 | 1 | 1177 | 1 | 1191 | 0.0e+00 | 2272.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030166.t1 | MTR_4g124030 | 94.878 | 1191 | 47 | 4 | 1 | 1177 | 1 | 1191 | 0.0 | 2329 |
MS.gene030166.t1 | MTR_8g023445 | 27.928 | 1221 | 692 | 38 | 25 | 1169 | 894 | 2002 | 1.99e-107 | 373 |
MS.gene030166.t1 | MTR_1g023500 | 28.028 | 1156 | 659 | 37 | 82 | 1160 | 116 | 1175 | 8.34e-104 | 355 |
MS.gene030166.t1 | MTR_3g105990 | 27.210 | 1165 | 686 | 42 | 55 | 1165 | 128 | 1184 | 3.91e-92 | 322 |
MS.gene030166.t1 | MTR_0002s0510 | 28.610 | 367 | 229 | 8 | 756 | 1091 | 709 | 1073 | 4.97e-28 | 124 |
MS.gene030166.t1 | MTR_4g051130 | 25.635 | 394 | 251 | 9 | 756 | 1112 | 635 | 1023 | 4.64e-26 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030166.t1 | AT1G29940 | 66.269 | 1174 | 363 | 9 | 24 | 1174 | 15 | 1178 | 0.0 | 1597 |
MS.gene030166.t1 | AT5G45140 | 27.429 | 1225 | 707 | 34 | 25 | 1169 | 39 | 1161 | 4.38e-117 | 392 |
MS.gene030166.t1 | AT5G45140 | 27.429 | 1225 | 707 | 34 | 25 | 1169 | 39 | 1161 | 4.38e-117 | 392 |
MS.gene030166.t1 | AT4G21710 | 37.575 | 503 | 261 | 9 | 679 | 1160 | 702 | 1172 | 1.43e-89 | 315 |
MS.gene030166.t1 | AT3G18090 | 26.466 | 1160 | 662 | 37 | 84 | 1164 | 3 | 1050 | 4.76e-85 | 300 |
MS.gene030166.t1 | AT3G23780 | 25.122 | 1234 | 710 | 37 | 31 | 1164 | 48 | 1167 | 6.28e-84 | 298 |
MS.gene030166.t1 | AT3G23780 | 25.122 | 1234 | 710 | 37 | 31 | 1164 | 48 | 1167 | 6.28e-84 | 298 |
MS.gene030166.t1 | AT5G45140 | 23.971 | 826 | 490 | 25 | 25 | 789 | 39 | 787 | 1.19e-48 | 187 |
MS.gene030166.t1 | AT3G18090 | 24.123 | 941 | 553 | 30 | 84 | 956 | 3 | 850 | 5.78e-48 | 186 |
MS.gene030166.t1 | AT3G18090 | 24.123 | 941 | 553 | 30 | 84 | 956 | 3 | 850 | 7.51e-48 | 186 |
MS.gene030166.t1 | ATCG00190 | 25.564 | 399 | 245 | 9 | 756 | 1112 | 650 | 1038 | 5.26e-27 | 119 |
Find 260 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTTATATATTTAGATATT+TGG | 0.150423 | 8.3:-5224315 | MS.gene030166:CDS |
ATCCTCATGCATTTCCTTCT+AGG | 0.177043 | 8.3:-5227896 | MS.gene030166:CDS |
GGAGTGCAAGGCTTGGTTTC+TGG | 0.195259 | 8.3:-5239166 | MS.gene030166:intron |
TTTCTTGGAGCTCTTCTTAC+TGG | 0.215958 | 8.3:+5224389 | None:intergenic |
ATGGAGATAAGTTTGATTTC+AGG | 0.216355 | 8.3:-5236570 | MS.gene030166:CDS |
GACTGTCTCCATGCCTTTAC+TGG | 0.220510 | 8.3:+5224343 | None:intergenic |
CTGACATGTGAGATATTTAT+TGG | 0.222815 | 8.3:-5225157 | MS.gene030166:CDS |
TTTCTGAGATCATGCATAAT+TGG | 0.229170 | 8.3:+5238652 | None:intergenic |
CAAGCAAAACTCACATATTC+AGG | 0.244547 | 8.3:-5242054 | MS.gene030166:CDS |
GAGTTTGATGGATTTGAAAA+TGG | 0.259640 | 8.3:+5242417 | None:intergenic |
CTAAATTTGTCACCAATGAT+AGG | 0.265803 | 8.3:+5228017 | None:intergenic |
TTATTGGTTGCCGGGTTATC+TGG | 0.271464 | 8.3:+5224618 | None:intergenic |
GTAACAAACCTGTAGCATTA+TGG | 0.280077 | 8.3:+5241951 | None:intergenic |
GCCAAATATCTAAATATATA+AGG | 0.285773 | 8.3:+5224314 | None:intergenic |
GATGACGATTGCCATGCTTT+TGG | 0.303530 | 8.3:-5227874 | MS.gene030166:CDS |
GTTCTTACTGTTCTTCTAGA+TGG | 0.314908 | 8.3:-5233401 | MS.gene030166:CDS |
TCTGATTACAATTTATCTTA+AGG | 0.322503 | 8.3:-5237851 | MS.gene030166:intron |
AACTTTATTACCTTCGTAAT+GGG | 0.326822 | 8.3:-5239187 | MS.gene030166:CDS |
GCCTCAAAAGCGGCCAGTTC+GGG | 0.328796 | 8.3:-5224426 | MS.gene030166:CDS |
TTCATTGTAAATGCTACAAT+AGG | 0.329799 | 8.3:+5230375 | None:intergenic |
TCTCCATGCCTTTACTGGTT+TGG | 0.330407 | 8.3:+5224348 | None:intergenic |
CATCGAGGTGCCTTATTTGC+CGG | 0.333601 | 8.3:-5235008 | MS.gene030166:CDS |
GAACTACATATTTGTTCATC+TGG | 0.335336 | 8.3:-5238168 | MS.gene030166:CDS |
ATCCCCGTATTTCCAGAAAA+TGG | 0.335691 | 8.3:+5227939 | None:intergenic |
TCAGAAGTTATATCATCTTC+AGG | 0.338084 | 8.3:-5232615 | MS.gene030166:intron |
ATCAACAAGTGAAGCCGATT+TGG | 0.339438 | 8.3:+5225261 | None:intergenic |
CTTCTAGATGGTTGTATTGT+TGG | 0.343537 | 8.3:-5233389 | MS.gene030166:CDS |
GTTCTGTACAGTGGGGTCTA+TGG | 0.349809 | 8.3:-5225187 | MS.gene030166:CDS |
CTGCATATCTTCTGCATGAT+AGG | 0.353362 | 8.3:-5224526 | MS.gene030166:CDS |
ATAACCCGGCAACCAATAAA+AGG | 0.354560 | 8.3:-5224614 | MS.gene030166:CDS |
CCCTGATAGCTTGCAAAATC+AGG | 0.355438 | 8.3:-5237893 | MS.gene030166:CDS |
AGTACGAAGTCCGGCAAATA+AGG | 0.358031 | 8.3:+5234998 | None:intergenic |
CAAGGAAGAGGCATCGGAAA+TGG | 0.360830 | 8.3:-5240513 | MS.gene030166:CDS |
TAACAAACCTGTAGCATTAT+GGG | 0.363680 | 8.3:+5241952 | None:intergenic |
TCAAATTTACATAAATTTCT+CGG | 0.373209 | 8.3:+5238902 | None:intergenic |
GTTTCATGGACAAATATATC+AGG | 0.373827 | 8.3:-5232151 | MS.gene030166:intron |
TTCCGATGCCTCTTCCTTGT+AGG | 0.374406 | 8.3:+5240517 | None:intergenic |
TGCCCTGTTCACACACCTGA+TGG | 0.380461 | 8.3:-5234833 | MS.gene030166:CDS |
CGGCCAGTTCGGGATATTCC+TGG | 0.381535 | 8.3:-5224416 | MS.gene030166:CDS |
ATGTATCACTTTCAGATGAT+AGG | 0.383427 | 8.3:-5230409 | MS.gene030166:intron |
TGTTTAGTCAAATTATTGAT+AGG | 0.386512 | 8.3:+5242538 | None:intergenic |
AGTGAAGCCGATTTGGATCC+AGG | 0.387474 | 8.3:+5225268 | None:intergenic |
TAAGATATGCAGATATGATA+TGG | 0.387759 | 8.3:-5232217 | MS.gene030166:intron |
TCATTGTAAATGCTACAATA+GGG | 0.391512 | 8.3:+5230376 | None:intergenic |
ACTATATTGACCTGTTCAAA+TGG | 0.392258 | 8.3:+5233055 | None:intergenic |
TCGAAGGACAACCTTTATCT+AGG | 0.392383 | 8.3:+5230526 | None:intergenic |
AGCCTCAAAAGCGGCCAGTT+CGG | 0.393073 | 8.3:-5224427 | MS.gene030166:CDS |
TGAGGATTTATAATGAGATC+TGG | 0.393154 | 8.3:+5227912 | None:intergenic |
TTCGATCATTTGATTGAAGC+TGG | 0.393885 | 8.3:-5242448 | MS.gene030166:CDS |
GAGAAGGGATTTAATTACCT+TGG | 0.398091 | 8.3:-5225217 | MS.gene030166:CDS |
AGAAGAACAGTAAGAACTTC+AGG | 0.400898 | 8.3:+5233407 | None:intergenic |
GGTTCACGAGTTTCTTTGTC+TGG | 0.403347 | 8.3:+5242559 | None:intergenic |
ACTGGGCGAATAAATCTAGA+AGG | 0.404724 | 8.3:+5233130 | None:intergenic |
TGAAAGCATGCTTCCACAAA+TGG | 0.405174 | 8.3:+5224463 | None:intergenic |
CTTCAATGTCTAGAATATAT+TGG | 0.405292 | 8.3:-5238763 | MS.gene030166:intron |
GCTGATGTGTGTTCCATTTG+TGG | 0.407697 | 8.3:-5224476 | MS.gene030166:CDS |
TCATTTGATTGAAGCTGGAT+TGG | 0.413717 | 8.3:-5242443 | MS.gene030166:CDS |
ATTGAAAGTATGTTGACAAC+TGG | 0.415887 | 8.3:-5236292 | MS.gene030166:CDS |
TATCCCACTTCCAGATCATC+TGG | 0.418411 | 8.3:+5233205 | None:intergenic |
TGGACTTCCACATGTTGGTC+AGG | 0.419529 | 8.3:-5230493 | MS.gene030166:intron |
GTTGCAGTTCTGGCATATAC+AGG | 0.420036 | 8.3:-5232305 | MS.gene030166:CDS |
GCCCTGTTCACACACCTGAT+GGG | 0.420267 | 8.3:-5234832 | MS.gene030166:CDS |
ATGCACAACGACGAGTTTGA+TGG | 0.421460 | 8.3:+5242405 | None:intergenic |
GAAAAGGGAAAGGGCGTTGT+TGG | 0.421686 | 8.3:-5238856 | MS.gene030166:CDS |
ATGCTACAATAGGGTTCATC+TGG | 0.424466 | 8.3:+5230385 | None:intergenic |
TTTGGAATCTGTTGCTGCTA+AGG | 0.425213 | 8.3:-5227856 | MS.gene030166:intron |
AAACTTTATTACCTTCGTAA+TGG | 0.425499 | 8.3:-5239188 | MS.gene030166:CDS |
TCCAGTTACTTCATCGTGAA+TGG | 0.427058 | 8.3:-5240224 | MS.gene030166:intron |
AGATGACTTGTTTAGAATCA+TGG | 0.427872 | 8.3:+5232188 | None:intergenic |
TGGATTTCCTCATGAGTTGC+AGG | 0.429898 | 8.3:+5232858 | None:intergenic |
TGCAAGCTATCAGGGTTATC+CGG | 0.431986 | 8.3:+5237901 | None:intergenic |
GTAGAACGTGGAATGTTTCA+TGG | 0.432630 | 8.3:-5232165 | MS.gene030166:CDS |
AACATTGATGAATTTCCAAC+AGG | 0.435304 | 8.3:-5232341 | MS.gene030166:CDS |
AAACGCTATAGTTGCAGTTC+TGG | 0.435840 | 8.3:-5232315 | MS.gene030166:CDS |
ATGGCAATCGTCATCCTAGA+AGG | 0.440798 | 8.3:+5227882 | None:intergenic |
TGACATGTGAGATATTTATT+GGG | 0.442222 | 8.3:-5225156 | MS.gene030166:CDS |
ACTCATTGGTCCATTTGAAC+AGG | 0.443814 | 8.3:-5233065 | MS.gene030166:intron |
ATTAAAAGAGGAGGGAAGAT+TGG | 0.449156 | 8.3:-5236598 | MS.gene030166:CDS |
TTATAATGAAAAGTATGAAA+AGG | 0.451296 | 8.3:-5238872 | MS.gene030166:CDS |
CGAAGCCGTTGATAATAAAC+AGG | 0.451989 | 8.3:+5225133 | None:intergenic |
CCCTGTTCACACACCTGATG+GGG | 0.452005 | 8.3:-5234831 | MS.gene030166:CDS |
GCAGTTTCCCATAATGCTAC+AGG | 0.456087 | 8.3:-5241959 | MS.gene030166:intron |
TGCCCTTTCACCAACAAGCT+GGG | 0.456100 | 8.3:+5238831 | None:intergenic |
AATGAAAACATTGAACTCAT+TGG | 0.456136 | 8.3:-5233079 | MS.gene030166:CDS |
GCTTCACTTGTTGATGAGCT+TGG | 0.456854 | 8.3:-5225253 | MS.gene030166:CDS |
CACTTAGCATTCCTGTTGGA+TGG | 0.457079 | 8.3:+5232838 | None:intergenic |
AGCATGGGTGGAGCATATCC+TGG | 0.460373 | 8.3:-5233172 | MS.gene030166:CDS |
GGTCCAGGTAGAAATATCTT+TGG | 0.460821 | 8.3:+5233431 | None:intergenic |
ACGAAATATGTACCAGTGTC+AGG | 0.462159 | 8.3:-5232772 | MS.gene030166:intron |
TATAATGAAAAGTATGAAAA+GGG | 0.463600 | 8.3:-5238871 | MS.gene030166:CDS |
TTGCCCTTTCACCAACAAGC+TGG | 0.464006 | 8.3:+5238830 | None:intergenic |
GTTGTTGGGACCCAGCTTGT+TGG | 0.469302 | 8.3:-5238841 | MS.gene030166:CDS |
CTTCCACCATCTCCACCGTC+AGG | 0.471301 | 8.3:+5232894 | None:intergenic |
GACCCAGCTTGTTGGTGAAA+GGG | 0.472523 | 8.3:-5238833 | MS.gene030166:CDS |
CATGAGGAAATCCATCCAAC+AGG | 0.472590 | 8.3:-5232849 | MS.gene030166:CDS |
TGAGATCATGCATAATTGGT+TGG | 0.473528 | 8.3:+5238656 | None:intergenic |
TGTCCTTCGATTGATTCTGA+TGG | 0.482402 | 8.3:-5230513 | MS.gene030166:CDS |
AAGGAAGAGGCATCGGAAAT+GGG | 0.483388 | 8.3:-5240512 | MS.gene030166:CDS |
GGTTCCACTGAACTACGAAA+TGG | 0.483461 | 8.3:+5225289 | None:intergenic |
GGAATTGATATATTTCTCAC+TGG | 0.484324 | 8.3:+5233112 | None:intergenic |
CACGGTTGTAGTACGAAGTC+CGG | 0.484463 | 8.3:+5234989 | None:intergenic |
CTTCTTGACGAGATTAAAAG+AGG | 0.484881 | 8.3:-5236610 | MS.gene030166:CDS |
GACCTATAATTCTATCAAAA+CGG | 0.485327 | 8.3:-5240184 | MS.gene030166:CDS |
TTTCGTAGTTCAGTGGAACC+TGG | 0.485765 | 8.3:-5225286 | MS.gene030166:CDS |
AAAAGGGAAAGGGCGTTGTT+GGG | 0.486687 | 8.3:-5238855 | MS.gene030166:CDS |
GATGCAGATTCCAGATGATC+TGG | 0.489032 | 8.3:-5233215 | MS.gene030166:intron |
GGGAATACGATTTGGAGAAA+TGG | 0.489085 | 8.3:-5224576 | MS.gene030166:CDS |
GGAGCTAACGTCTCTGATAC+AGG | 0.489156 | 8.3:-5224242 | MS.gene030166:CDS |
GGACCCAGCTTGTTGGTGAA+AGG | 0.490200 | 8.3:-5238834 | MS.gene030166:CDS |
TAAATTTGTCACCAATGATA+GGG | 0.491135 | 8.3:+5228018 | None:intergenic |
GTAAGAACTTCAGGCGGTCC+AGG | 0.492510 | 8.3:+5233416 | None:intergenic |
GTTGGCTACAAGTATACCTC+TGG | 0.493375 | 8.3:-5236266 | MS.gene030166:CDS |
CACCCTCGAAACCCTATCAT+TGG | 0.494354 | 8.3:-5228029 | MS.gene030166:CDS |
GAAAAGTATGAAAAGGGAAA+GGG | 0.494371 | 8.3:-5238865 | MS.gene030166:CDS |
AAATTGAAACTTGCTTCAAA+CGG | 0.494700 | 8.3:+5242179 | None:intergenic |
GAAAATGGCATATCGATGTC+TGG | 0.496359 | 8.3:+5227954 | None:intergenic |
GGTGATATGTTAAAAGAGAA+GGG | 0.498936 | 8.3:-5225232 | MS.gene030166:CDS |
ATCCCAGGAATATCCCGAAC+TGG | 0.499532 | 8.3:+5224413 | None:intergenic |
ACAGTCAATATAAGCAGGTT+CGG | 0.502538 | 8.3:+5230315 | None:intergenic |
AGCAATGTGATAATCAGAAC+AGG | 0.504266 | 8.3:+5224496 | None:intergenic |
CATGCTTGCCAAACCAGTAA+AGG | 0.504843 | 8.3:-5224356 | MS.gene030166:CDS |
TAAATTGTAATCAGATGCCC+AGG | 0.505628 | 8.3:+5237859 | None:intergenic |
ACTATAGCGTTTGTGCCTGT+TGG | 0.506362 | 8.3:+5232326 | None:intergenic |
AAAAGTTCAACCGTTCAGCC+TGG | 0.506822 | 8.3:+5235060 | None:intergenic |
TTGGGCCTGTTTATTATCAA+CGG | 0.508733 | 8.3:-5225138 | MS.gene030166:CDS |
TGGTGATATGTTAAAAGAGA+AGG | 0.511185 | 8.3:-5225233 | MS.gene030166:CDS |
AATATATCAATTCCCTCCAA+TGG | 0.512239 | 8.3:-5233103 | MS.gene030166:CDS |
AAGGGGATGTGAAGAGGTAG+AGG | 0.512648 | 8.3:+5233149 | None:intergenic |
AGTGGAACCTGGATCCAAAT+CGG | 0.512784 | 8.3:-5225275 | MS.gene030166:CDS |
TGTATCACTTTCAGATGATA+GGG | 0.514438 | 8.3:-5230408 | MS.gene030166:intron |
GACTTCAGGCTTAACACTCC+AGG | 0.518681 | 8.3:-5235078 | MS.gene030166:CDS |
TGAAAAGTATGAAAAGGGAA+AGG | 0.521308 | 8.3:-5238866 | MS.gene030166:CDS |
CCCCATCAGGTGTGTGAACA+GGG | 0.523117 | 8.3:+5234831 | None:intergenic |
GAAAGTTTCATCTGCTGCAG+TGG | 0.524951 | 8.3:-5233315 | MS.gene030166:intron |
CGGTGTCCTGACGGTGGAGA+TGG | 0.526434 | 8.3:-5232900 | MS.gene030166:CDS |
TATGCACTTGTGCGAACGAT+GGG | 0.526924 | 8.3:+5232374 | None:intergenic |
CGTAATGGGAGTGCAAGGCT+TGG | 0.527022 | 8.3:-5239173 | MS.gene030166:CDS |
AAGTTCATTTAGTGAGAGGC+GGG | 0.528625 | 8.3:-5239939 | MS.gene030166:CDS |
AAGAGGCATCGGAAATGGGC+GGG | 0.530360 | 8.3:-5240508 | MS.gene030166:intron |
CAATCTCAATTAAAATGTTG+AGG | 0.530764 | 8.3:+5233471 | None:intergenic |
TGACACTGGTACATATTTCG+TGG | 0.531009 | 8.3:+5232774 | None:intergenic |
ATACTCTCGCCTCAGAAGGA+TGG | 0.534809 | 8.3:-5242233 | MS.gene030166:CDS |
ATGACTCTAAAGCTAAGTAA+TGG | 0.536288 | 8.3:-5224263 | MS.gene030166:CDS |
GATTCCAGATGATCTGGAAG+TGG | 0.536614 | 8.3:-5233209 | MS.gene030166:CDS |
TAATCACGTCAAGAAAGTCT+TGG | 0.538125 | 8.3:-5236347 | MS.gene030166:CDS |
TATGTTCCTTTGAGCATGGG+TGG | 0.540180 | 8.3:-5233184 | MS.gene030166:CDS |
TAAAATACTCTCGCCTCAGA+AGG | 0.541776 | 8.3:-5242237 | MS.gene030166:CDS |
GAGGATTTATAATGAGATCT+GGG | 0.544658 | 8.3:+5227913 | None:intergenic |
TATGTTGACAACTGGAAGGT+TGG | 0.546247 | 8.3:-5236284 | MS.gene030166:CDS |
GATGTGAAGTTCTGTACAGT+GGG | 0.547898 | 8.3:-5225195 | MS.gene030166:CDS |
TCGGTCAGTGGTGTCAATGA+GGG | 0.548017 | 8.3:+5238921 | None:intergenic |
TTATCAACGGCTTCGTCACA+TGG | 0.548246 | 8.3:-5225125 | MS.gene030166:CDS |
TAAAAGGACGAAAGCGTGGT+GGG | 0.548495 | 8.3:-5224598 | MS.gene030166:CDS |
AGTAGTAGACATGGGCAGAA+AGG | 0.551330 | 8.3:-5227996 | MS.gene030166:CDS |
GGCAAAACTAGAAGAGTGGC+TGG | 0.552035 | 8.3:-5236650 | MS.gene030166:CDS |
TATACCTCTGGATCTGCCTC+AGG | 0.553166 | 8.3:-5236254 | MS.gene030166:intron |
GGATATGTTCCTTTGAGCAT+GGG | 0.554810 | 8.3:-5233187 | MS.gene030166:CDS |
ACTATTGACTTGACAGAGCT+AGG | 0.555281 | 8.3:-5230591 | MS.gene030166:CDS |
ACTTTCTCAACCTCAGTGGA+AGG | 0.556456 | 8.3:+5233359 | None:intergenic |
TACATAAATTTCTCGGTCAG+TGG | 0.557275 | 8.3:+5238909 | None:intergenic |
CACCAATGATAGGGTTTCGA+GGG | 0.557355 | 8.3:+5228027 | None:intergenic |
ACTAGAAGAGTGGCTGGCGA+AGG | 0.558079 | 8.3:-5236644 | MS.gene030166:CDS |
GCTCTTCTTACTGGTATCCC+AGG | 0.560155 | 8.3:+5224398 | None:intergenic |
ATCTAGAAGGGGATGTGAAG+AGG | 0.561686 | 8.3:+5233143 | None:intergenic |
GGCCAGTTCGGGATATTCCT+GGG | 0.563198 | 8.3:-5224415 | MS.gene030166:CDS |
CGTGATTCTCTACTAGCACA+TGG | 0.564313 | 8.3:-5224551 | MS.gene030166:CDS |
TCGGAAACTTGTGTCCTACA+AGG | 0.566048 | 8.3:-5240531 | MS.gene030166:CDS |
CTAGAAGAGTGGCTGGCGAA+GGG | 0.566149 | 8.3:-5236643 | MS.gene030166:CDS |
TTCATTTCCTGCAACTCATG+AGG | 0.567143 | 8.3:-5232865 | MS.gene030166:CDS |
CTCGGTCAGTGGTGTCAATG+AGG | 0.567179 | 8.3:+5238920 | None:intergenic |
TTGACGAGATTAAAAGAGGA+GGG | 0.567281 | 8.3:-5236606 | MS.gene030166:CDS |
ACGTCGTTCTATGATTCTCA+AGG | 0.568610 | 8.3:-5233530 | MS.gene030166:CDS |
TCACCAATGATAGGGTTTCG+AGG | 0.570830 | 8.3:+5228026 | None:intergenic |
AAAGGACGAAAGCGTGGTGG+GGG | 0.571277 | 8.3:-5224596 | MS.gene030166:CDS |
CTGGGCGAATAAATCTAGAA+GGG | 0.573428 | 8.3:+5233131 | None:intergenic |
AGCAACAGATTCCAAAAGCA+TGG | 0.573677 | 8.3:+5227863 | None:intergenic |
ACCTTCGTAATGGGAGTGCA+AGG | 0.573683 | 8.3:-5239178 | MS.gene030166:CDS |
GGGATATGTTCCTTTGAGCA+TGG | 0.573702 | 8.3:-5233188 | MS.gene030166:CDS |
TGATCGAAGGATTCGATGTG+TGG | 0.574232 | 8.3:+5242463 | None:intergenic |
GTCCTACAAGGAAGAGGCAT+CGG | 0.576712 | 8.3:-5240519 | MS.gene030166:CDS |
GAATTGATATATTTCTCACT+GGG | 0.577869 | 8.3:+5233113 | None:intergenic |
ATATCTAAATATATAAGGCA+TGG | 0.581059 | 8.3:+5224319 | None:intergenic |
TTGGCGATTCCATCCTTCTG+AGG | 0.581121 | 8.3:+5242224 | None:intergenic |
GATGTGAAGAGGTAGAGGCC+AGG | 0.584083 | 8.3:+5233154 | None:intergenic |
TGCGAAGTTCATTTAGTGAG+AGG | 0.589204 | 8.3:-5239943 | MS.gene030166:CDS |
GCTACACAGTCAATATAAGC+AGG | 0.591404 | 8.3:+5230310 | None:intergenic |
ACTTGTGTCCTACAAGGAAG+AGG | 0.591750 | 8.3:-5240525 | MS.gene030166:CDS |
AAGAGAGTACATGCTTCCTG+TGG | 0.595392 | 8.3:-5239058 | MS.gene030166:CDS |
GACAAATTTAGTAGTAGACA+TGG | 0.596142 | 8.3:-5228005 | MS.gene030166:CDS |
AAGGTGTTTGCTCTCAGTTG+TGG | 0.599266 | 8.3:-5227977 | MS.gene030166:CDS |
ACTTGAGAGACTTTCCTCCT+CGG | 0.599985 | 8.3:-5240550 | MS.gene030166:CDS |
CCAATAAAAGGACGAAAGCG+TGG | 0.605899 | 8.3:-5224602 | MS.gene030166:CDS |
GAAGAGGCATCGGAAATGGG+CGG | 0.605929 | 8.3:-5240509 | MS.gene030166:CDS |
TCATTTAGTGAGAGGCGGGA+AGG | 0.606069 | 8.3:-5239935 | MS.gene030166:CDS |
AGCTTCAATCAAATGATCGA+AGG | 0.606444 | 8.3:+5242450 | None:intergenic |
GTGCGAACGATGGGAGTCTG+AGG | 0.606834 | 8.3:+5232383 | None:intergenic |
ACTACACTTAGCATTCCTGT+TGG | 0.608391 | 8.3:+5232834 | None:intergenic |
TATGCTCCACCCATGCTCAA+AGG | 0.608670 | 8.3:+5233178 | None:intergenic |
TGTAGATCAGACATCAGTGC+CGG | 0.608947 | 8.3:-5237920 | MS.gene030166:CDS |
AAAAGGACGAAAGCGTGGTG+GGG | 0.608956 | 8.3:-5224597 | MS.gene030166:CDS |
GATATGCAGATATGATATGG+AGG | 0.612422 | 8.3:-5232214 | MS.gene030166:intron |
CCTGTTCACACACCTGATGG+GGG | 0.614042 | 8.3:-5234830 | MS.gene030166:CDS |
TTGTTGAAGATCGTTCTGCT+TGG | 0.614101 | 8.3:+5230565 | None:intergenic |
GAAGTTCATTTAGTGAGAGG+CGG | 0.614172 | 8.3:-5239940 | MS.gene030166:CDS |
ATTCCAGATGATCTGGAAGT+GGG | 0.615109 | 8.3:-5233208 | MS.gene030166:CDS |
GCTTAACACTCCAGGCTGAA+CGG | 0.615451 | 8.3:-5235070 | MS.gene030166:CDS |
CTTGACGAGATTAAAAGAGG+AGG | 0.615616 | 8.3:-5236607 | MS.gene030166:CDS |
GAACTTCGCACTGTACTCAT+CGG | 0.618330 | 8.3:+5239956 | None:intergenic |
TTGTAGGACACAAGTTTCCG+AGG | 0.620494 | 8.3:+5240533 | None:intergenic |
GACACTGGTACATATTTCGT+GGG | 0.621932 | 8.3:+5232775 | None:intergenic |
ATGGAGATACGGTGTCCTGA+CGG | 0.623427 | 8.3:-5232909 | MS.gene030166:CDS |
CTTTCTCAACCTCAGTGGAA+GGG | 0.624496 | 8.3:+5233360 | None:intergenic |
TGTCCTGACGGTGGAGATGG+TGG | 0.625850 | 8.3:-5232897 | MS.gene030166:CDS |
TAGGTCGAATACATCTCTCA+AGG | 0.626077 | 8.3:+5240201 | None:intergenic |
AAGCAAAACTCACATATTCA+GGG | 0.627750 | 8.3:-5242053 | MS.gene030166:CDS |
CGGCAAATAAGGCACCTCGA+TGG | 0.627999 | 8.3:+5235009 | None:intergenic |
TTGCCAAAGATATTTCTACC+TGG | 0.629358 | 8.3:-5233434 | MS.gene030166:CDS |
CTCTGATTATGATCTGACCA+TGG | 0.631157 | 8.3:+5232798 | None:intergenic |
TGTACAGAACTTCACATCCA+AGG | 0.632321 | 8.3:+5225200 | None:intergenic |
TAGAAGAGTGGCTGGCGAAG+GGG | 0.632445 | 8.3:-5236642 | MS.gene030166:CDS |
TCTGATGGACTTCCACATGT+TGG | 0.632803 | 8.3:-5230498 | MS.gene030166:CDS |
TGACAAACCTGACCAACATG+TGG | 0.635400 | 8.3:+5230486 | None:intergenic |
TGATAGCTTGCAAAATCAGG+AGG | 0.636823 | 8.3:-5237890 | MS.gene030166:CDS |
GGATGTGAAGTTCTGTACAG+TGG | 0.636952 | 8.3:-5225196 | MS.gene030166:CDS |
AACTCCATTTCGTAGTTCAG+TGG | 0.638842 | 8.3:-5225293 | MS.gene030166:CDS |
ATATGCACTTGTGCGAACGA+TGG | 0.638963 | 8.3:+5232373 | None:intergenic |
ACCTTCAAAAGAATGCCCAC+AGG | 0.639312 | 8.3:+5239042 | None:intergenic |
GCACTGTTGACCAGATAACC+CGG | 0.641974 | 8.3:-5224628 | MS.gene030166:CDS |
AAGATTGTCGAACCTGACAC+TGG | 0.642233 | 8.3:+5232760 | None:intergenic |
CATGGTTTCAGACAAATACC+AGG | 0.642270 | 8.3:-5225107 | MS.gene030166:intron |
AGAGAGTACATGCTTCCTGT+GGG | 0.642359 | 8.3:-5239057 | MS.gene030166:CDS |
TTGCAGTTCTGGCATATACA+GGG | 0.643228 | 8.3:-5232304 | MS.gene030166:intron |
TTGCCAAACCAGTAAAGGCA+TGG | 0.647104 | 8.3:-5224351 | MS.gene030166:CDS |
TGATTCTCTACTAGCACATG+GGG | 0.650364 | 8.3:-5224549 | MS.gene030166:CDS |
CCTAGGCAAAACTAGAAGAG+TGG | 0.652979 | 8.3:-5236654 | MS.gene030166:intron |
GTGATTCTCTACTAGCACAT+GGG | 0.654450 | 8.3:-5224550 | MS.gene030166:CDS |
CATTCATTGAGCCTCAAAAG+CGG | 0.654657 | 8.3:-5224436 | MS.gene030166:CDS |
AACAAGTCATCTGTAGAACG+TGG | 0.655328 | 8.3:-5232177 | MS.gene030166:CDS |
TGGGCGAATAAATCTAGAAG+GGG | 0.662753 | 8.3:+5233132 | None:intergenic |
CATACCTGAGGCAGATCCAG+AGG | 0.663126 | 8.3:+5236250 | None:intergenic |
AGTCCATCAGAATCAATCGA+AGG | 0.666630 | 8.3:+5230510 | None:intergenic |
CTCGGGCAATAGCTTCCGCA+CGG | 0.667015 | 8.3:+5234971 | None:intergenic |
ATCCTAGAAGGAAATGCATG+AGG | 0.669093 | 8.3:+5227894 | None:intergenic |
ATAAAGTTTCACTGTTAACG+AGG | 0.669717 | 8.3:+5239202 | None:intergenic |
ATAGATGGCAAAGCAAACAA+TGG | 0.671615 | 8.3:-5232672 | MS.gene030166:intron |
TGGTTATATCCCTTCCACTG+AGG | 0.672040 | 8.3:-5233369 | MS.gene030166:CDS |
GAGATACGGTGTCCTGACGG+TGG | 0.674317 | 8.3:-5232906 | MS.gene030166:CDS |
ACAAATTTAGTAGTAGACAT+GGG | 0.676927 | 8.3:-5228004 | MS.gene030166:CDS |
AAAGTATGTTGACAACTGGA+AGG | 0.677218 | 8.3:-5236288 | MS.gene030166:CDS |
GCCTTGCACTCCCATTACGA+AGG | 0.680942 | 8.3:+5239177 | None:intergenic |
ATAAAAGGACGAAAGCGTGG+TGG | 0.684155 | 8.3:-5224599 | MS.gene030166:CDS |
TAGGACACAAGTTTCCGAGG+AGG | 0.715281 | 8.3:+5240536 | None:intergenic |
GACAACTTTCTCAACCTCAG+TGG | 0.722219 | 8.3:+5233355 | None:intergenic |
AAATTGTAATCAGATGCCCA+GGG | 0.727412 | 8.3:+5237860 | None:intergenic |
ATATGATTCAACAATCCACA+AGG | 0.728035 | 8.3:+5234806 | None:intergenic |
AGAACAGTAAGAACTTCAGG+CGG | 0.731284 | 8.3:+5233410 | None:intergenic |
TAGTTGCTAATCTTACACCA+TGG | 0.738274 | 8.3:-5232815 | MS.gene030166:CDS |
CAAAACTCACATATTCAGGG+AGG | 0.739537 | 8.3:-5242050 | MS.gene030166:CDS |
ATGTGAAGTTCTGTACAGTG+GGG | 0.799080 | 8.3:-5225194 | MS.gene030166:CDS |
GACTTCGTACTACAACCGTG+CGG | 0.836314 | 8.3:-5234986 | MS.gene030166:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 5224235 | 5242584 | 5224235 | ID=MS.gene030166 |
chr8.3 | mRNA | 5224235 | 5242584 | 5224235 | ID=MS.gene030166.t1;Parent=MS.gene030166 |
chr8.3 | exon | 5242411 | 5242584 | 5242411 | ID=MS.gene030166.t1.exon1;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5242411 | 5242584 | 5242411 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5242189 | 5242263 | 5242189 | ID=MS.gene030166.t1.exon2;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5242189 | 5242263 | 5242189 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5241960 | 5242082 | 5241960 | ID=MS.gene030166.t1.exon3;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5241960 | 5242082 | 5241960 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5240509 | 5240585 | 5240509 | ID=MS.gene030166.t1.exon4;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5240509 | 5240585 | 5240509 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5240178 | 5240241 | 5240178 | ID=MS.gene030166.t1.exon5;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5240178 | 5240241 | 5240178 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5239908 | 5239978 | 5239908 | ID=MS.gene030166.t1.exon6;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5239908 | 5239978 | 5239908 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5239167 | 5239244 | 5239167 | ID=MS.gene030166.t1.exon7;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5239167 | 5239244 | 5239167 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5239044 | 5239089 | 5239044 | ID=MS.gene030166.t1.exon8;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5239044 | 5239089 | 5239044 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5238764 | 5238944 | 5238764 | ID=MS.gene030166.t1.exon9;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5238764 | 5238944 | 5238764 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5238636 | 5238688 | 5238636 | ID=MS.gene030166.t1.exon10;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5238636 | 5238688 | 5238636 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5238137 | 5238210 | 5238137 | ID=MS.gene030166.t1.exon11;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5238137 | 5238210 | 5238137 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5237852 | 5237969 | 5237852 | ID=MS.gene030166.t1.exon12;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5237852 | 5237969 | 5237852 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5236566 | 5236671 | 5236566 | ID=MS.gene030166.t1.exon13;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5236566 | 5236671 | 5236566 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5236255 | 5236370 | 5236255 | ID=MS.gene030166.t1.exon14;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5236255 | 5236370 | 5236255 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5234972 | 5235099 | 5234972 | ID=MS.gene030166.t1.exon15;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5234972 | 5235099 | 5234972 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5234792 | 5234871 | 5234792 | ID=MS.gene030166.t1.exon16;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5234792 | 5234871 | 5234792 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5233316 | 5233557 | 5233316 | ID=MS.gene030166.t1.exon17;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5233316 | 5233557 | 5233316 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5233066 | 5233230 | 5233066 | ID=MS.gene030166.t1.exon18;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5233066 | 5233230 | 5233066 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5232773 | 5232937 | 5232773 | ID=MS.gene030166.t1.exon19;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5232773 | 5232937 | 5232773 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5232616 | 5232690 | 5232616 | ID=MS.gene030166.t1.exon20;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5232616 | 5232690 | 5232616 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5232305 | 5232408 | 5232305 | ID=MS.gene030166.t1.exon21;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5232305 | 5232408 | 5232305 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5232152 | 5232227 | 5232152 | ID=MS.gene030166.t1.exon22;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5232152 | 5232227 | 5232152 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5230494 | 5230619 | 5230494 | ID=MS.gene030166.t1.exon23;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5230494 | 5230619 | 5230494 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5230282 | 5230416 | 5230282 | ID=MS.gene030166.t1.exon24;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5230282 | 5230416 | 5230282 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5227857 | 5228069 | 5227857 | ID=MS.gene030166.t1.exon25;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5227857 | 5228069 | 5227857 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5225108 | 5225347 | 5225108 | ID=MS.gene030166.t1.exon26;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5225108 | 5225347 | 5225108 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
chr8.3 | exon | 5224235 | 5224663 | 5224235 | ID=MS.gene030166.t1.exon27;Parent=MS.gene030166.t1 |
chr8.3 | CDS | 5224235 | 5224663 | 5224235 | ID=cds.MS.gene030166.t1;Parent=MS.gene030166.t1 |
Gene Sequence |
Protein sequence |