AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95440.t1 MTR_7g020830 82.979 94 2 1 26 119 35 114 1.22e-51 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95440.t1 AT2G29540 58.209 67 28 0 18 84 27 93 1.13e-24 91.3
MS.gene95440.t1 AT2G29540 58.209 67 28 0 18 84 27 93 1.13e-24 91.3
MS.gene95440.t1 AT2G29540 63.333 60 22 0 25 84 51 110 1.97e-23 88.6

Find 20 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATGTTAGGAGCACTTT+TGG 0.284863 7.4:-80749024 MS.gene95440:CDS
ACTGCTTCCAACAGACTTGC+TGG 0.364194 7.4:+80748936 None:intergenic
AGTGCTTCTAACAGACTTGC+TGG 0.397112 7.4:+80748978 None:intergenic
GTTACCACTTACCAGTTGTC+TGG 0.401383 7.4:+80750941 None:intergenic
TAGTGAGTCGGATGATGATA+TGG 0.429703 7.4:-80748899 MS.gene95440:CDS
TGCTTATGTGCAAGCATGTT+AGG 0.455656 7.4:-80749035 MS.gene95440:CDS
GCTTCGACTTCACTCTGGTT+CGG 0.456842 7.4:+80751736 None:intergenic
TACCCACAAAATGTCACTCT+TGG 0.463264 7.4:+80751006 None:intergenic
AATGTCAGAGTCCAGACAAC+TGG 0.483345 7.4:-80750952 MS.gene95440:intron
GGTGTTAAAAGATGGTTGTC+AGG 0.493371 7.4:-80749064 MS.gene95440:CDS
GTGAAGTCGAAGCACGGTTG+AGG 0.513839 7.4:-80751726 MS.gene95440:CDS
GCAAGTGAGGTGTTAAAAGA+TGG 0.554457 7.4:-80749072 MS.gene95440:CDS
ACCGTGCTTCGACTTCACTC+TGG 0.557412 7.4:+80751731 None:intergenic
TGTTAGAAGCACTTCTGAGA+AGG 0.562324 7.4:-80748968 MS.gene95440:CDS
GTTAAAACCAGCAAGTCTGT+TGG 0.570443 7.4:-80748943 MS.gene95440:CDS
GAAGCACGGTTGAGGTGCTG+TGG 0.595532 7.4:-80751718 MS.gene95440:CDS
TGTAGGGGATCCAGCAAGTG+AGG 0.610245 7.4:-80749085 MS.gene95440:intron
ACCAGAGTGAAGTCGAAGCA+CGG 0.622597 7.4:-80751732 MS.gene95440:CDS
TGAGAAGTCAGTTAGTGAGT+CGG 0.628461 7.4:-80748911 MS.gene95440:CDS
TCTGGACTCTGACATTAACA+CGG 0.671455 7.4:+80750959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAAATAAAAAAAAA+AGG - chr7.4:80750068-80750087 MS.gene95440:intron 0.0%
!! TTATTATTTGTATTAAACAA+TGG + chr7.4:80750563-80750582 None:intergenic 10.0%
!! TTGTTGTAAAAATAAAAAAA+TGG + chr7.4:80749940-80749959 None:intergenic 10.0%
!!! GTTTTTTTGATAAAAATATT+AGG - chr7.4:80750276-80750295 MS.gene95440:intron 10.0%
!! AATTTACCCAAAATATTAAA+AGG - chr7.4:80751067-80751086 MS.gene95440:intron 15.0%
!! TTAACTAACTTAAAAAAGTT+TGG + chr7.4:80750004-80750023 None:intergenic 15.0%
!!! AAAATCTACCTATTTTATAA+AGG + chr7.4:80751283-80751302 None:intergenic 15.0%
!!! ATCTATTTTATCAAACTTTA+AGG - chr7.4:80750972-80750991 MS.gene95440:CDS 15.0%
!!! TCTATTTTATCAAACTTTAA+GGG - chr7.4:80750973-80750992 MS.gene95440:CDS 15.0%
!! ATAAACAGTGTTAAATCTAA+AGG - chr7.4:80750941-80750960 MS.gene95440:intron 20.0%
!! ATGTTGTAAATTATCTAAAC+AGG - chr7.4:80750029-80750048 MS.gene95440:intron 20.0%
!! TAAACAGTGTTAAATCTAAA+GGG - chr7.4:80750942-80750961 MS.gene95440:intron 20.0%
!! TTAAAACAAGTAACAAATAC+TGG + chr7.4:80749897-80749916 None:intergenic 20.0%
!! TTATAAATGTCTGTTTAACT+TGG - chr7.4:80749523-80749542 MS.gene95440:intron 20.0%
!! TTCATATAGAAATGAATTGT+AGG - chr7.4:80750194-80750213 MS.gene95440:intron 20.0%
!! TTCTATTCAAAGCTAATAAT+AGG + chr7.4:80749980-80749999 None:intergenic 20.0%
!!! ATGAGTTTTAAATTTGATGA+TGG - chr7.4:80750777-80750796 MS.gene95440:intron 20.0%
!!! CGATATAAAAATGGAATTTT+CGG + chr7.4:80749805-80749824 None:intergenic 20.0%
!!! TCTAAATTTGTTCTCTTTTA+TGG - chr7.4:80751190-80751209 MS.gene95440:intron 20.0%
! AATGTCAGGTTTAAAAATAG+AGG + chr7.4:80750352-80750371 None:intergenic 25.0%
! AGAAGATAAGAAAACTTCAT+TGG + chr7.4:80750154-80750173 None:intergenic 25.0%
! AGTAGCTTCCTTTATAAAAT+AGG - chr7.4:80751272-80751291 MS.gene95440:intron 25.0%
! ATAGAAATGAATTGTAGGTT+TGG - chr7.4:80750199-80750218 MS.gene95440:intron 25.0%
! ATATGATTCATTGAGGAAAA+AGG + chr7.4:80750635-80750654 None:intergenic 25.0%
! ATGTCAGGTTTAAAAATAGA+GGG + chr7.4:80750351-80750370 None:intergenic 25.0%
! CTATTTCACTATAAACTATC+TGG + chr7.4:80751371-80751390 None:intergenic 25.0%
! GCTAAAAATGACAAGAATTA+AGG + chr7.4:80749593-80749612 None:intergenic 25.0%
! GCTATTCATTATATGTGAAT+TGG - chr7.4:80751219-80751238 MS.gene95440:intron 25.0%
! GGATATAATGCAACTTTAAT+TGG - chr7.4:80749756-80749775 MS.gene95440:intron 25.0%
! TATGATTCATTGAGGAAAAA+GGG + chr7.4:80750634-80750653 None:intergenic 25.0%
! TGTCATAACAAAAAACAAAG+TGG - chr7.4:80749252-80749271 MS.gene95440:intron 25.0%
! TGTCTAGCAAAATATGAAAT+TGG + chr7.4:80749855-80749874 None:intergenic 25.0%
! TTCAAAGCTAATAATAGGAA+TGG + chr7.4:80749975-80749994 None:intergenic 25.0%
! TTGTGATTGCGATATAAAAA+TGG + chr7.4:80749814-80749833 None:intergenic 25.0%
!! AAAATGGAATTTTCGGTATT+AGG + chr7.4:80749798-80749817 None:intergenic 25.0%
!! AAGAGAACAAATTTAGAACA+TGG + chr7.4:80751187-80751206 None:intergenic 25.0%
!! ACCATTGCCTTTTAATATTT+TGG + chr7.4:80751077-80751096 None:intergenic 25.0%
!! ATCAGTAATTTTCCATTGAA+TGG - chr7.4:80751531-80751550 MS.gene95440:intron 25.0%
!! ATGAACTCTAAAAGGAAAAT+TGG - chr7.4:80751249-80751268 MS.gene95440:intron 25.0%
!! CCATTGCCTTTTAATATTTT+GGG + chr7.4:80751076-80751095 None:intergenic 25.0%
!! TCAGTAATTTTCCATTGAAT+GGG - chr7.4:80751532-80751551 MS.gene95440:intron 25.0%
!! TCATGTCGATTATAATGAAA+AGG - chr7.4:80750751-80750770 MS.gene95440:intron 25.0%
!!! AATTGTTTTTGGATACATTG+TGG + chr7.4:80749352-80749371 None:intergenic 25.0%
!!! AGGTAGATTTTCATTTTTGT+TGG - chr7.4:80751292-80751311 MS.gene95440:intron 25.0%
!!! AGTTTTAAATTTGATGATGG+TGG - chr7.4:80750780-80750799 MS.gene95440:intron 25.0%
!!! ATTCCATGATTTGTTTTTGA+GGG - chr7.4:80749103-80749122 MS.gene95440:intron 25.0%
!!! ATTTTATCAAACTTTAAGGG+AGG - chr7.4:80750976-80750995 MS.gene95440:CDS 25.0%
AAAGACTTTCGTTGTATTTG+TGG - chr7.4:80751478-80751497 MS.gene95440:intron 30.0%
ACAAAAAGCTAATGTGTTTG+TGG + chr7.4:80750481-80750500 None:intergenic 30.0%
AGATGAAGCGATAATGAAAA+GGG - chr7.4:80750818-80750837 MS.gene95440:intron 30.0%
AGTCTAACATTGATACTCTT+AGG + chr7.4:80749418-80749437 None:intergenic 30.0%
CCCAAAATATTAAAAGGCAA+TGG - chr7.4:80751073-80751092 MS.gene95440:intron 30.0%
CTTCCTAAAAACTCATTCTT+GGG + chr7.4:80750669-80750688 None:intergenic 30.0%
GATCAACAATGAACTCTAAA+AGG - chr7.4:80751241-80751260 MS.gene95440:intron 30.0%
TAATAACATGCACAATGGTT+TGG + chr7.4:80751417-80751436 None:intergenic 30.0%
TAGATGAAGCGATAATGAAA+AGG - chr7.4:80750817-80750836 MS.gene95440:intron 30.0%
TGTCAGGTTTAAAAATAGAG+GGG + chr7.4:80750350-80750369 None:intergenic 30.0%
! ACAAATCTGAAGCACTAATA+AGG - chr7.4:80751337-80751356 MS.gene95440:intron 30.0%
! TGTCGATTATAAAACTAGAG+GGG - chr7.4:80751003-80751022 MS.gene95440:CDS 30.0%
! TTTTTGTTGACATTTGCACA+AGG - chr7.4:80750494-80750513 MS.gene95440:intron 30.0%
!! AAAAAACAAAGTGGATTGTG+GGG - chr7.4:80749261-80749280 MS.gene95440:intron 30.0%
!! ACAAAAAACAAAGTGGATTG+TGG - chr7.4:80749259-80749278 MS.gene95440:intron 30.0%
!! AGTGTCGATTATAAAACTAG+AGG - chr7.4:80751001-80751020 MS.gene95440:CDS 30.0%
!! CAAAAAACAAAGTGGATTGT+GGG - chr7.4:80749260-80749279 MS.gene95440:intron 30.0%
!! GTGTCGATTATAAAACTAGA+GGG - chr7.4:80751002-80751021 MS.gene95440:CDS 30.0%
!! TGTGTTGTTTGAATAAACCT+CGG - chr7.4:80751031-80751050 MS.gene95440:intron 30.0%
!! TTTAAATTTGATGATGGTGG+AGG - chr7.4:80750783-80750802 MS.gene95440:intron 30.0%
!!! GATTCCATGATTTGTTTTTG+AGG - chr7.4:80749102-80749121 MS.gene95440:intron 30.0%
!!! GTTTTTTGTTATGACAACCA+AGG + chr7.4:80749248-80749267 None:intergenic 30.0%
!!! GTTTTTTTATGTCGTGAAGT+TGG - chr7.4:80749136-80749155 MS.gene95440:intron 30.0%
!!! TTCCATGATTTGTTTTTGAG+GGG - chr7.4:80749104-80749123 MS.gene95440:intron 30.0%
!!! TTTTTGTTGGTTTAAACGTG+TGG - chr7.4:80751305-80751324 MS.gene95440:intron 30.0%
AAACAAATCATGGAATCCGA+AGG + chr7.4:80749099-80749118 None:intergenic 35.0%
AAGGAATACCATCTTTATCG+CGG - chr7.4:80750513-80750532 MS.gene95440:intron 35.0%
AATTAAGGAAGAAGAGGAAG+AGG + chr7.4:80749578-80749597 None:intergenic 35.0%
ACAGTGTTAAATCTAAAGGG+AGG - chr7.4:80750945-80750964 MS.gene95440:intron 35.0%
ACTTAGATACATGTCCAACA+TGG - chr7.4:80749435-80749454 MS.gene95440:intron 35.0%
AGACAACAACAATTCTCATC+AGG + chr7.4:80749625-80749644 None:intergenic 35.0%
ATAGAGATAGATCTGAGAAG+GGG - chr7.4:80750854-80750873 MS.gene95440:intron 35.0%
ATATCTCTCTGTATCTGTAG+GGG - chr7.4:80751557-80751576 MS.gene95440:intron 35.0%
CATACGCAAGATCAAGAAAA+GGG + chr7.4:80749209-80749228 None:intergenic 35.0%
CATATCTCTCTGTATCTGTA+GGG - chr7.4:80751556-80751575 MS.gene95440:intron 35.0%
CCTTCCTAAAAACTCATTCT+TGG + chr7.4:80750670-80750689 None:intergenic 35.0%
CGTCATAATAACATGCACAA+TGG + chr7.4:80751422-80751441 None:intergenic 35.0%
CTAGCTATATACCTCCAAAA+TGG + chr7.4:80749470-80749489 None:intergenic 35.0%
CTGCTTCATATGATTCATTG+AGG + chr7.4:80750642-80750661 None:intergenic 35.0%
GAAATGAATTGTAGGTTTGG+TGG - chr7.4:80750202-80750221 MS.gene95440:intron 35.0%
GACAAGAATTAAGGAAGAAG+AGG + chr7.4:80749584-80749603 None:intergenic 35.0%
GATAGAGATAGATCTGAGAA+GGG - chr7.4:80750853-80750872 MS.gene95440:intron 35.0%
GATGAAGCGATAATGAAAAG+GGG - chr7.4:80750819-80750838 MS.gene95440:intron 35.0%
GTCAGGTTTAAAAATAGAGG+GGG + chr7.4:80750349-80750368 None:intergenic 35.0%
GTCGATTATAAAACTAGAGG+GGG - chr7.4:80751004-80751023 MS.gene95440:CDS 35.0%
GTTAACACCGTTAAACACAA+GGG + chr7.4:80750380-80750399 None:intergenic 35.0%
TATATGCAGAAAAGCCTACA+AGG + chr7.4:80751148-80751167 None:intergenic 35.0%
TCATACGCAAGATCAAGAAA+AGG + chr7.4:80749210-80749229 None:intergenic 35.0%
TCATATCTCTCTGTATCTGT+AGG - chr7.4:80751555-80751574 MS.gene95440:intron 35.0%
TGGATTGTGAATTACATGAC+TGG - chr7.4:80751118-80751137 MS.gene95440:intron 35.0%
TGTTAACACCGTTAAACACA+AGG + chr7.4:80750381-80750400 None:intergenic 35.0%
TTTGTTTGTGTAGAGGTTTG+TGG + chr7.4:80749045-80749064 None:intergenic 35.0%
! ACATTAACACGGTTTTCTGA+TGG + chr7.4:80749690-80749709 None:intergenic 35.0%
! CATTGGTTGAACAGAATAGT+AGG + chr7.4:80750137-80750156 None:intergenic 35.0%
! GTACCCAAGAATGAGTTTTT+AGG - chr7.4:80750663-80750682 MS.gene95440:intron 35.0%
! TGTTGTTTGAATAAACCTCG+GGG - chr7.4:80751033-80751052 MS.gene95440:intron 35.0%
!! CCAAGAATGAGTTTTTAGGA+AGG - chr7.4:80750667-80750686 MS.gene95440:intron 35.0%
!! GTGTTGTTTGAATAAACCTC+GGG - chr7.4:80751032-80751051 MS.gene95440:intron 35.0%
!! TTTTATGTCGTGAAGTTGGT+AGG - chr7.4:80749140-80749159 MS.gene95440:intron 35.0%
!!! TTTGTTTTTGAGGGGTGATT+TGG - chr7.4:80749112-80749131 MS.gene95440:intron 35.0%
AAGCGATAATGAAAAGGGGA+AGG - chr7.4:80750823-80750842 MS.gene95440:intron 40.0%
AATGGCCAAAGTTTCCATGT+TGG + chr7.4:80749452-80749471 None:intergenic 40.0%
AATTACATTGACCTCCCTTG+AGG - chr7.4:80750302-80750321 MS.gene95440:intron 40.0%
ACACAACCTGAGTGATTCTT+GGG + chr7.4:80750695-80750714 None:intergenic 40.0%
ATTTCAACATACCTCAAGGG+AGG + chr7.4:80750316-80750335 None:intergenic 40.0%
CAACTGGTAAGTGGTAACAT+AGG - chr7.4:80749721-80749740 MS.gene95440:intron 40.0%
CACCCCTCAAAAACAAATCA+TGG + chr7.4:80749109-80749128 None:intergenic 40.0%
CATGTCCAACATGGAAACTT+TGG - chr7.4:80749444-80749463 MS.gene95440:intron 40.0%
GAGAGATATGACCCATTCAA+TGG + chr7.4:80751546-80751565 None:intergenic 40.0%
GATAATGAAAAGGGGAAGGA+GGG - chr7.4:80750827-80750846 MS.gene95440:intron 40.0%
GATACATTGTGGATGCAAAG+TGG + chr7.4:80749341-80749360 None:intergenic 40.0%
GCCATTTCAACATACCTCAA+GGG + chr7.4:80750319-80750338 None:intergenic 40.0%
GGATAGAGATAGATCTGAGA+AGG - chr7.4:80750852-80750871 MS.gene95440:intron 40.0%
GGTGTTAAAAGATGGTTGTC+AGG - chr7.4:80751593-80751612 MS.gene95440:intron 40.0%
GTTAAAACCAGCAAGTCTGT+TGG - chr7.4:80751714-80751733 MS.gene95440:intron 40.0%
GTTGTTTGAATAAACCTCGG+GGG - chr7.4:80751034-80751053 MS.gene95440:intron 40.0%
TAACATAGGCTGTCTCATGT+TGG - chr7.4:80749735-80749754 MS.gene95440:intron 40.0%
TACCCACAAAATGTCACTCT+TGG + chr7.4:80749654-80749673 None:intergenic 40.0%
TACTACCATGTGCTTCATCT+TGG - chr7.4:80750719-80750738 MS.gene95440:intron 40.0%
TAGAGATAGATCTGAGAAGG+GGG - chr7.4:80750855-80750874 MS.gene95440:intron 40.0%
TAGTGAGTCGGATGATGATA+TGG - chr7.4:80751758-80751777 MS.gene95440:CDS 40.0%
TCCCTTGAGGTATGTTGAAA+TGG - chr7.4:80750315-80750334 MS.gene95440:intron 40.0%
TCTGGACTCTGACATTAACA+CGG + chr7.4:80749701-80749720 None:intergenic 40.0%
TGAGAAGTCAGTTAGTGAGT+CGG - chr7.4:80751746-80751765 MS.gene95440:CDS 40.0%
TGCTTATGTGCAAGCATGTT+AGG - chr7.4:80751622-80751641 MS.gene95440:intron 40.0%
TTGACCTCCCTTGTGTTTAA+CGG - chr7.4:80750370-80750389 MS.gene95440:intron 40.0%
! AGTCCAAGAGTGACATTTTG+TGG - chr7.4:80749648-80749667 MS.gene95440:intron 40.0%
! CATGGAAACTTTGGCCATTT+TGG - chr7.4:80749453-80749472 MS.gene95440:intron 40.0%
! GAATTTTCGGTATTAGGCTC+TGG + chr7.4:80749792-80749811 None:intergenic 40.0%
! GCAAGTGAGGTGTTAAAAGA+TGG - chr7.4:80751585-80751604 MS.gene95440:intron 40.0%
! GTCCAAGAGTGACATTTTGT+GGG - chr7.4:80749649-80749668 MS.gene95440:intron 40.0%
! TCTTTTAACACCTCACTTGC+TGG + chr7.4:80751585-80751604 None:intergenic 40.0%
! TGCCATTTCAACATACCTCA+AGG + chr7.4:80750320-80750339 None:intergenic 40.0%
!! TGGGGCTTCTTTTTGTTTAC+CGG - chr7.4:80749279-80749298 MS.gene95440:intron 40.0%
!! TGTTAGAAGCACTTCTGAGA+AGG - chr7.4:80751689-80751708 MS.gene95440:intron 40.0%
!!! AAGCATGTTAGGAGCACTTT+TGG - chr7.4:80751633-80751652 MS.gene95440:intron 40.0%
!!! AGCATGTTAGGAGCACTTTT+GGG - chr7.4:80751634-80751653 MS.gene95440:intron 40.0%
!!! TTTTTGAGTGTGTGGTGTGT+TGG + chr7.4:80749019-80749038 None:intergenic 40.0%
AACACCGTTAAACACAAGGG+AGG + chr7.4:80750377-80750396 None:intergenic 45.0%
AAGGAAGAAGAGGAAGAGGT+TGG + chr7.4:80749574-80749593 None:intergenic 45.0%
AATGTCAGAGTCCAGACAAC+TGG - chr7.4:80749705-80749724 MS.gene95440:intron 45.0%
ACATGACTGGTAGTCCTTGT+AGG - chr7.4:80751131-80751150 MS.gene95440:intron 45.0%
AGGAAGAAGAGGAAGAGGTT+GGG + chr7.4:80749573-80749592 None:intergenic 45.0%
AGTGCTTCTAACAGACTTGC+TGG + chr7.4:80751682-80751701 None:intergenic 45.0%
ATTGTGGATGCAAAGTGGCA+TGG + chr7.4:80749336-80749355 None:intergenic 45.0%
CACAATCCAGCACATACTTG+TGG + chr7.4:80751107-80751126 None:intergenic 45.0%
CGATAATGAAAAGGGGAAGG+AGG - chr7.4:80750826-80750845 MS.gene95440:intron 45.0%
CGCGGTGATGAGAATTGTTT+CGG - chr7.4:80750531-80750550 MS.gene95440:intron 45.0%
GACACAACCTGAGTGATTCT+TGG + chr7.4:80750696-80750715 None:intergenic 45.0%
GATCTCGATTCTGTCTACCT+TGG - chr7.4:80749228-80749247 MS.gene95440:intron 45.0%
GGGGAAATCGTCTTCAACAA+TGG - chr7.4:80750874-80750893 MS.gene95440:intron 45.0%
GTTACCACTTACCAGTTGTC+TGG + chr7.4:80749719-80749738 None:intergenic 45.0%
TCGAAAACAATCACCTACCG+AGG - chr7.4:80749069-80749088 MS.gene95440:CDS 45.0%
TCTCATCACCGCGATAAAGA+TGG + chr7.4:80750524-80750543 None:intergenic 45.0%
TGCTACCAAGATGAAGCACA+TGG + chr7.4:80750727-80750746 None:intergenic 45.0%
! AAGGTACCCAAGAATCACTC+AGG - chr7.4:80750686-80750705 MS.gene95440:intron 45.0%
!! ACACGGTTTTCTGATGGATG+AGG + chr7.4:80749684-80749703 None:intergenic 45.0%
!! CACGGTTTTCTGATGGATGA+GGG + chr7.4:80749683-80749702 None:intergenic 45.0%
!! CGACAGCTTTGTTTGTGTAG+AGG + chr7.4:80749052-80749071 None:intergenic 45.0%
!! GGAAACTTTGGCCATTTTGG+AGG - chr7.4:80749456-80749475 MS.gene95440:intron 45.0%
!! GGCTTCTTTTTGTTTACCGG+GGG - chr7.4:80749282-80749301 MS.gene95440:intron 45.0%
!! GGGCTTCTTTTTGTTTACCG+GGG - chr7.4:80749281-80749300 MS.gene95440:intron 45.0%
!! GGGGCTTCTTTTTGTTTACC+GGG - chr7.4:80749280-80749299 MS.gene95440:intron 45.0%
!! TCTTTTTGTTTACCGGGGGT+GGG - chr7.4:80749286-80749305 MS.gene95440:intron 45.0%
!! TTCTTTTTGTTTACCGGGGG+TGG - chr7.4:80749285-80749304 MS.gene95440:intron 45.0%
!!! TGTGGCTGTTTTTGAGTGTG+TGG + chr7.4:80749027-80749046 None:intergenic 45.0%
!!! TGTTAGGAGCACTTTTGGGA+AGG - chr7.4:80751638-80751657 MS.gene95440:intron 45.0%
!!! TTATTAAAAAAAATTGTTTT+TGG + chr7.4:80749363-80749382 None:intergenic 5.0%
!!! TTTTTTTGATAAAAATATTA+GGG - chr7.4:80750277-80750296 MS.gene95440:intron 5.0%
AATGAAAAGGGGAAGGAGGG+CGG - chr7.4:80750830-80750849 MS.gene95440:intron 50.0%
AATTACATTCACCTCCCCCG+AGG + chr7.4:80751051-80751070 None:intergenic 50.0%
ACACAAGGGAGGTCAATGTC+AGG + chr7.4:80750366-80750385 None:intergenic 50.0%
ACCAGAGTGAAGTCGAAGCA+CGG - chr7.4:80748925-80748944 MS.gene95440:CDS 50.0%
ACTGCTTCCAACAGACTTGC+TGG + chr7.4:80751724-80751743 None:intergenic 50.0%
GAGCATCCACAAGTATGTGC+TGG - chr7.4:80751098-80751117 MS.gene95440:intron 50.0%
GAGTCCAGACAACTGGTAAG+TGG - chr7.4:80749712-80749731 MS.gene95440:intron 50.0%
GCTTCGACTTCACTCTGGTT+CGG + chr7.4:80748924-80748943 None:intergenic 50.0%
GTTTGAATAAACCTCGGGGG+AGG - chr7.4:80751037-80751056 MS.gene95440:intron 50.0%
TGGAATCCGAAGGATTGCCT+CGG + chr7.4:80749089-80749108 None:intergenic 50.0%
!! CTTTTTGTTTACCGGGGGTG+GGG - chr7.4:80749287-80749306 MS.gene95440:intron 50.0%
!! GTGTTGGTAGCAAGGTAGTC+AGG + chr7.4:80749003-80749022 None:intergenic 50.0%
!! TGTGTGGTGTGTTGGTAGCA+AGG + chr7.4:80749011-80749030 None:intergenic 50.0%
!! TTTTTGTTTACCGGGGGTGG+GGG - chr7.4:80749288-80749307 MS.gene95440:intron 50.0%
ACCGTGCTTCGACTTCACTC+TGG + chr7.4:80748929-80748948 None:intergenic 55.0%
ATCCGAAGGATTGCCTCGGT+AGG + chr7.4:80749085-80749104 None:intergenic 55.0%
ATGAAAAGGGGAAGGAGGGC+GGG - chr7.4:80750831-80750850 MS.gene95440:intron 55.0%
CACCTACCGAGGCAATCCTT+CGG - chr7.4:80749080-80749099 MS.gene95440:CDS 55.0%
GTGAAGTCGAAGCACGGTTG+AGG - chr7.4:80748931-80748950 MS.gene95440:CDS 55.0%
TGTAGGGGATCCAGCAAGTG+AGG - chr7.4:80751572-80751591 MS.gene95440:intron 55.0%
ATCGTGCGATCCTGCGTGCT+GGG - chr7.4:80748970-80748989 MS.gene95440:CDS 60.0%
GAAACTCTTACCCCCACCCC+CGG + chr7.4:80749301-80749320 None:intergenic 60.0%
!! GAAGCACGGTTGAGGTGCTG+TGG - chr7.4:80748939-80748958 MS.gene95440:CDS 60.0%
AGGAACGAGTCCCAGCACGC+AGG + chr7.4:80748983-80749002 None:intergenic 65.0%
GATCGTGCGATCCTGCGTGC+TGG - chr7.4:80748969-80748988 MS.gene95440:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 80748891 80751788 80748891 ID=MS.gene95440
chr7.4 mRNA 80748891 80751788 80748891 ID=MS.gene95440.t1;Parent=MS.gene95440
chr7.4 exon 80751715 80751788 80751715 ID=MS.gene95440.t1.exon1;Parent=MS.gene95440.t1
chr7.4 CDS 80751715 80751788 80751715 ID=cds.MS.gene95440.t1;Parent=MS.gene95440.t1
chr7.4 exon 80750953 80751029 80750953 ID=MS.gene95440.t1.exon2;Parent=MS.gene95440.t1
chr7.4 CDS 80750953 80751029 80750953 ID=cds.MS.gene95440.t1;Parent=MS.gene95440.t1
chr7.4 exon 80748891 80749102 80748891 ID=MS.gene95440.t1.exon3;Parent=MS.gene95440.t1
chr7.4 CDS 80748891 80749102 80748891 ID=cds.MS.gene95440.t1;Parent=MS.gene95440.t1
Gene Sequence

>MS.gene95440

ATGGCAAAAAACAGGGGAAACAGAGCAAAACCGAACCAGAGTGAAGTCGAAGCACGGTTGAGGTGCTGTGGCACGTAAGATCGTGCGATCCTGCGTGCTGGGACTCGTTCCTGACTACCTTGCTACCAACACACCACACACTCAAAAACAGCCACAAACCTCTACACAAACAAAGCTGTCGAAAACAATCACCTACCGAGGCAATCCTTCGGATTCCATGATTTGTTTTTGAGGGGTGATTTGGAGTTTTTTTATGTCGTGAAGTTGGTAGGATCTAATGATATGTGTTAAGATCTCACTATTTATGATATTTGACCCTTTTCTTGATCTTGCGTATGATCTCGATTCTGTCTACCTTGGTTGTCATAACAAAAAACAAAGTGGATTGTGGGGCTTCTTTTTGTTTACCGGGGGTGGGGGTAAGAGTTTCTTTCTTTCAAAACCATGCCACTTTGCATCCACAATGTATCCAAAAACAATTTTTTTTAATAATTGAAGAAAATCATATACTTTGAGCTATGTATCCTAAGAGTATCAATGTTAGACTTAGATACATGTCCAACATGGAAACTTTGGCCATTTTGGAGGTATATAGCTAGAGTTTGAAATATTTTTCGTTTTTGTAGCTCATATTATAAATGTCTGTTTAACTTGGCTTTTTCATATCTCTCTTTCTGTGCCCAACCTCTTCCTCTTCTTCCTTAATTCTTGTCATTTTTAGCACAATATATCCTGATGAGAATTGTTGTTGTCTTGCAGTCCAAGAGTGACATTTTGTGGGTACAGCATCCCTCATCCATCAGAAAACCGTGTTAATGTCAGAGTCCAGACAACTGGTAAGTGGTAACATAGGCTGTCTCATGTTGGATATAATGCAACTTTAATTGGAAAATCTGTTCCAGAGCCTAATACCGAAAATTCCATTTTTATATCGCAATCACAAGATTGTGTACTTCAGCTTCCAATTTCATATTTTGCTAGACAATCTTTTCTATTGTGCTGACCAGTATTTGTTACTTGTTTTAAGATAATTTACATAATTTGAGCCATTTTTTTATTTTTACAACAAGCAAAGCAAAGTCCATTCCTATTATTAGCTTTGAATAGAAGCCAAACTTTTTTAAGTTAGTTAATTCTGATGTTGTAAATTATCTAAACAGGTTTTCTTATCAATGCTAATATAAAAATAAAAAAAAAAGGATAAGAAAACTTCGTTAGTTGAACAGAAAATGCAAAGTCAGTTCCTACTATTCTGTTCAACCAATGAAGTTTTCTTATCTTCTTTTTTTCTTTTCTTATCAAGTTCATATAGAAATGAATTGTAGGTTTGGTGGTACATCGATGAATAACTAAATAGTTAAAACTCATTATACAATTTTATTTTTGTTTTTTTGATAAAAATATTAGGGAAAATTACATTGACCTCCCTTGAGGTATGTTGAAATGGCACTTACACCCCCTCTATTTTTAAACCTGACATTGACCTCCCTTGTGTTTAACGGTGTTAACACTCTGTTTAGATAAGAAGAAACTAAGTGTATTTTTGCTAATAAGAAACACAGTTTTTGTGATAATGTGTATGTATGACCACAAACACATTAGCTTTTTGTTGACATTTGCACAAGGAATACCATCTTTATCGCGGTGATGAGAATTGTTTCGGTGAATGCCATTGTTTAATACAAATAATAACAATGAAAAAAGACTTAAATATAGACATTGAAATTTTTAATAAATAAACCCTTTTTCCTCAATGAATCATATGAAGCAGTGTACCCAAGAATGAGTTTTTAGGAAGGTACCCAAGAATCACTCAGGTTGTGTCTCGTACTACCATGTGCTTCATCTTGGTAGCAATCATCATGTCGATTATAATGAAAAGGATAATGAGTTTTAAATTTGATGATGGTGGAGGAGAAAAATAAGTAGATGAAGCGATAATGAAAAGGGGAAGGAGGGCGGGATAGAGATAGATCTGAGAAGGGGGAAATCGTCTTCAACAATGGAAAACTGAAGATGAAAAGAAAAAGTCTTCAGTTGTAACAGAATCATAAACAGTGTTAAATCTAAAGGGAGGCTGTATCTATTTTATCAAACTTTAAGGGAGGTTAGTGTCGATTATAAAACTAGAGGGGGCATATGTGTTGTTTGAATAAACCTCGGGGGAGGTGAATGTAATTTACCCAAAATATTAAAAGGCAATGGTTGAGCATCCACAAGTATGTGCTGGATTGTGAATTACATGACTGGTAGTCCTTGTAGGCTTTTCTGCATATAAATCACTGTTGCACTTCCATGTTCTAAATTTGTTCTCTTTTATGGTTTATAGCTATTCATTATATGTGAATTGGATCAACAATGAACTCTAAAAGGAAAATTGGAGTAGCTTCCTTTATAAAATAGGTAGATTTTCATTTTTGTTGGTTTAAACGTGTGGAGAAGCTCTACAAATCTGAAGCACTAATAAGGACGAAATACCAGATAGTTTATAGTGAAATAGTAGTTAATAAGAGTGAGCTCAAACCAAACCATTGTGCATGTTATTATGACGTTGTTTGATCAATTTAATCGATCACACATAGTGAGAAAAGACTTTCGTTGTATTTGTGGTATGATTTATATCTAATTCAATGTCGCTGCATCAGTAATTTTCCATTGAATGGGTCATATCTCTCTGTATCTGTAGGGGATCCAGCAAGTGAGGTGTTAAAAGATGGTTGTCAGGATCTGATGCTTATGTGCAAGCATGTTAGGAGCACTTTTGGGAAGGCAATTAATGATTTTAAAACCAGCAAGTCTGTTAGAAGCACTTCTGAGAAGGCAGTTAAAACCAGCAAGTCTGTTGGAAGCAGTTCTGAGAAGTCAGTTAGTGAGTCGGATGATGATATGGATGAATGA
Protein sequence

>MS.gene95440.t1

MAKNRGNRAKPNQSEVEARLRCCGTPRVTFCGYSIPHPSENRVNVRVQTTGDPASEVLKDGCQDLMLMCKHVRSTFGKAINDFKTSKSVRSTSEKAVKTSKSVGSSSEKSVSESDDDMDE