Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013291.t1 | AES72906.2 | 98.5 | 608 | 9 | 0 | 1 | 608 | 6 | 613 | 0.00E+00 | 1217.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013291.t1 | Q8RWD6 | 49.5 | 600 | 254 | 8 | 1 | 595 | 18 | 573 | 7.5e-160 | 565.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013291.t1 | A0A072V194 | 98.5 | 608 | 9 | 0 | 1 | 608 | 6 | 613 | 0.0e+00 | 1217.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70188 | MS.gene013291 | PPI |
| MS.gene013291 | MS.gene40916 | PPI |
| MS.gene013291 | MS.gene06374 | PPI |
| MS.gene030587 | MS.gene013291 | PPI |
| MS.gene06374 | MS.gene013291 | PPI |
| MS.gene030591 | MS.gene013291 | PPI |
| MS.gene049252 | MS.gene013291 | PPI |
| MS.gene40916 | MS.gene013291 | PPI |
| MS.gene013291 | MS.gene49697 | PPI |
| MS.gene49697 | MS.gene013291 | PPI |
| MS.gene013291 | MS.gene70191 | PPI |
| MS.gene49700 | MS.gene013291 | PPI |
| MS.gene70191 | MS.gene013291 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013291.t1 | MTR_3g096670 | 98.358 | 609 | 10 | 0 | 1 | 609 | 6 | 614 | 0.0 | 1237 |
| MS.gene013291.t1 | MTR_3g096670 | 98.520 | 608 | 9 | 0 | 1 | 608 | 6 | 613 | 0.0 | 1236 |
| MS.gene013291.t1 | MTR_8g094190 | 51.835 | 654 | 216 | 8 | 2 | 595 | 14 | 628 | 0.0 | 643 |
| MS.gene013291.t1 | MTR_0095s0110 | 73.889 | 180 | 47 | 0 | 416 | 595 | 1 | 180 | 2.61e-91 | 280 |
| MS.gene013291.t1 | MTR_8g094150 | 59.524 | 252 | 82 | 1 | 344 | 595 | 334 | 565 | 3.01e-86 | 280 |
| MS.gene013291.t1 | MTR_8g094150 | 44.410 | 322 | 96 | 10 | 47 | 357 | 6 | 255 | 6.44e-65 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013291.t1 | AT5G39450 | 49.082 | 599 | 258 | 7 | 1 | 595 | 18 | 573 | 0.0 | 563 |
| MS.gene013291.t1 | AT5G39460 | 45.050 | 606 | 267 | 13 | 1 | 595 | 11 | 561 | 1.03e-164 | 483 |
| MS.gene013291.t1 | AT5G39480 | 43.350 | 609 | 284 | 9 | 1 | 602 | 11 | 565 | 1.93e-164 | 482 |
| MS.gene013291.t1 | AT5G39490 | 42.975 | 605 | 285 | 12 | 1 | 599 | 10 | 560 | 1.55e-157 | 464 |
| MS.gene013291.t1 | AT5G39470 | 41.304 | 92 | 29 | 1 | 1 | 92 | 95 | 161 | 7.57e-15 | 73.2 |
Find 158 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCTTATGAGGAGTTTC+AGG | 0.098515 | 3.4:+87470428 | MS.gene013291:CDS |
| ATCTTCCTAGAATATGTTTA+AGG | 0.167095 | 3.4:-87470095 | None:intergenic |
| TTCAACCATTGATTGGAATA+TGG | 0.169749 | 3.4:+87469293 | MS.gene013291:CDS |
| ACCAAGAATATGCCGGTTTA+TGG | 0.203112 | 3.4:+87470334 | MS.gene013291:CDS |
| TCCACAGGAGCTTGGTCCTT+TGG | 0.267598 | 3.4:+87469393 | MS.gene013291:CDS |
| GTGTGTGCCTTCTAATATTT+TGG | 0.270047 | 3.4:-87470472 | None:intergenic |
| TTGTCTTCAGAAGGCTTTCC+TGG | 0.279525 | 3.4:-87470378 | None:intergenic |
| TGGAAGATGGTCCAATTCTA+TGG | 0.287138 | 3.4:+87469419 | MS.gene013291:CDS |
| AACTGGATGATGATCCTTCT+AGG | 0.292128 | 3.4:+87469989 | MS.gene013291:CDS |
| GGTTTATGGGGAGGTGCTTT+TGG | 0.293403 | 3.4:+87470348 | MS.gene013291:CDS |
| CCCATAAACCGGCATATTCT+TGG | 0.295459 | 3.4:-87470335 | None:intergenic |
| ACTGCTTGTAGTAAGCTTCT+TGG | 0.298147 | 3.4:-87470148 | None:intergenic |
| CCACAGGAGCTTGGTCCTTT+GGG | 0.298903 | 3.4:+87469394 | MS.gene013291:CDS |
| AAGGCATCCACAGATATTTC+TGG | 0.305195 | 3.4:+87470067 | MS.gene013291:CDS |
| ATAAACATTGCTGAACCATT+AGG | 0.319557 | 3.4:-87470507 | None:intergenic |
| CTGTGCCTGATTCTCTGTTC+GGG | 0.323598 | 3.4:+87470013 | MS.gene013291:CDS |
| AACCTACTGTCGTGCATATT+CGG | 0.327929 | 3.4:-87470273 | None:intergenic |
| CCAAGAATATGCCGGTTTAT+GGG | 0.334164 | 3.4:+87470335 | MS.gene013291:CDS |
| TTGAAAGTTCAACCATTGAT+TGG | 0.338629 | 3.4:+87469286 | MS.gene013291:CDS |
| GAGGGTATTGCGAGTGGTTA+CGG | 0.341328 | 3.4:+87470621 | MS.gene013291:CDS |
| TCAACCATTGATTGGAATAT+GGG | 0.344404 | 3.4:+87469294 | MS.gene013291:CDS |
| TTGTTTCTGTTGTTGGTTGT+AGG | 0.352128 | 3.4:+87469365 | MS.gene013291:CDS |
| AATAGCCTTAAACATATTCT+AGG | 0.353226 | 3.4:+87470090 | MS.gene013291:CDS |
| CTTTGTGCATCAGTCGGGTT+TGG | 0.353457 | 3.4:+87469630 | MS.gene013291:CDS |
| CCAAGTTCGGCAAAAGATTC+CGG | 0.364712 | 3.4:+87469792 | MS.gene013291:CDS |
| ATGGCGATTGGAAATAATAA+TGG | 0.368078 | 3.4:+87469703 | MS.gene013291:CDS |
| CTTTCTTCTCCTCTCTTATG+AGG | 0.368356 | 3.4:+87470419 | MS.gene013291:CDS |
| GGGAAACTTTCAGAAAGATT+TGG | 0.370752 | 3.4:+87469858 | MS.gene013291:CDS |
| ATGGTGTAATTGCATTCATT+TGG | 0.371435 | 3.4:+87470691 | MS.gene013291:CDS |
| TAGTAGTGAGATTGACTATA+AGG | 0.376971 | 3.4:+87469930 | MS.gene013291:CDS |
| AGAAAGAATAAAGCCTTTCC+AGG | 0.383068 | 3.4:-87470402 | None:intergenic |
| AAAACAGAAGCCCATAGAAT+TGG | 0.386768 | 3.4:-87469430 | None:intergenic |
| TGGTTCAAAACAGTTAAAAC+TGG | 0.388163 | 3.4:+87469972 | MS.gene013291:CDS |
| GGTCCTTTGGGTATGGAAGA+TGG | 0.389355 | 3.4:+87469406 | MS.gene013291:CDS |
| GCTGTGCCTGATTCTCTGTT+CGG | 0.390553 | 3.4:+87470012 | MS.gene013291:CDS |
| CACTATGTCTTGCACCCTAA+TGG | 0.390728 | 3.4:+87470492 | MS.gene013291:CDS |
| GACCATTATTTCCTAGATTG+AGG | 0.401734 | 3.4:+87469827 | MS.gene013291:CDS |
| GGCATATTCTTGGTCAGCAC+TGG | 0.407046 | 3.4:-87470325 | None:intergenic |
| GCATATATCTCTTGGTGAAA+AGG | 0.408204 | 3.4:-87469110 | None:intergenic |
| AGCGAGCCCGGCTTTGATCC+AGG | 0.411314 | 3.4:-87470654 | None:intergenic |
| TAAACATTGCTGAACCATTA+GGG | 0.416942 | 3.4:-87470506 | None:intergenic |
| CCTTGGTGAAGACAGAGAAT+TGG | 0.419711 | 3.4:-87470865 | None:intergenic |
| ATTATTGCAAATACATCATC+AGG | 0.419726 | 3.4:-87469079 | None:intergenic |
| AATGGTCCTAACACCGTATC+CGG | 0.425914 | 3.4:-87469811 | None:intergenic |
| AGGGTATTGCGAGTGGTTAC+GGG | 0.426909 | 3.4:+87470622 | MS.gene013291:CDS |
| ATTGCAACCAAAATATTAGA+AGG | 0.430279 | 3.4:+87470465 | MS.gene013291:CDS |
| TGTTTCTGTTGTTGGTTGTA+GGG | 0.432289 | 3.4:+87469366 | MS.gene013291:CDS |
| AAGATTCCGGATACGGTGTT+AGG | 0.435752 | 3.4:+87469805 | MS.gene013291:CDS |
| GAAAGATTTGGTGCTCTTGA+GGG | 0.435957 | 3.4:+87469870 | MS.gene013291:CDS |
| TCCTCCCCGAACAGAGAATC+AGG | 0.441964 | 3.4:-87470018 | None:intergenic |
| TCGTACTCGAATGTGTTTGC+CGG | 0.445539 | 3.4:+87470828 | MS.gene013291:CDS |
| TCCCTCAATCTAGGAAATAA+TGG | 0.448700 | 3.4:-87469829 | None:intergenic |
| CTCTCTTATGAGGAGTTTCA+GGG | 0.449126 | 3.4:+87470429 | MS.gene013291:CDS |
| GAATCAGGCACAGCCCTAGA+AGG | 0.449453 | 3.4:-87470003 | None:intergenic |
| CTCAGATTGCATATATCTCT+TGG | 0.449530 | 3.4:-87469118 | None:intergenic |
| ATCTCTTGGTGAAAAGGACT+TGG | 0.449769 | 3.4:-87469104 | None:intergenic |
| GGTATTGATTATATTTATCC+TGG | 0.450911 | 3.4:+87469511 | MS.gene013291:CDS |
| AAGCCTTCTGAAGACAAGCC+TGG | 0.453347 | 3.4:+87470384 | MS.gene013291:CDS |
| CTCATAGGGATCTTGTTGAA+TGG | 0.459503 | 3.4:+87469221 | MS.gene013291:CDS |
| TGATATATGCAGGCCACAAA+TGG | 0.460883 | 3.4:+87469684 | MS.gene013291:CDS |
| TTATTTCCAATCGCCATTTG+TGG | 0.461439 | 3.4:-87469697 | None:intergenic |
| CTTCGTCAGAACCCTTTCCT+TGG | 0.463451 | 3.4:+87470547 | MS.gene013291:CDS |
| TTTCTTCATGGAAGGGAAAA+GGG | 0.464888 | 3.4:+87469490 | MS.gene013291:CDS |
| ACCATTATTTCCTAGATTGA+GGG | 0.466215 | 3.4:+87469828 | MS.gene013291:CDS |
| TTTCACATTCGATGCGTTCA+AGG | 0.467423 | 3.4:-87470229 | None:intergenic |
| GGATCTTGTTGAATGGAGAA+AGG | 0.470827 | 3.4:+87469228 | MS.gene013291:CDS |
| CCCTCGTCATCCCTCAATCT+AGG | 0.472452 | 3.4:-87469838 | None:intergenic |
| GATTCTCTGTTCGGGGAGGA+TGG | 0.473616 | 3.4:+87470021 | MS.gene013291:CDS |
| AAAAGCTTTGTGCATCAGTC+GGG | 0.474642 | 3.4:+87469625 | MS.gene013291:CDS |
| AAAAGCACCTCCCCATAAAC+CGG | 0.474751 | 3.4:-87470346 | None:intergenic |
| TGGTTGTAGGGTCATTCCAC+AGG | 0.475796 | 3.4:+87469378 | MS.gene013291:CDS |
| AGGTTACTACTAGCCAAGTT+CGG | 0.477394 | 3.4:+87469779 | MS.gene013291:CDS |
| AGAAAGATTTGGTGCTCTTG+AGG | 0.481807 | 3.4:+87469869 | MS.gene013291:CDS |
| GGAGCTTGGTCCTTTGGGTA+TGG | 0.485083 | 3.4:+87469399 | MS.gene013291:CDS |
| TTTCCAGGCTTGTCTTCAGA+AGG | 0.485572 | 3.4:-87470387 | None:intergenic |
| TGACTATAAGGCGAATTCTC+AGG | 0.485654 | 3.4:+87469942 | MS.gene013291:CDS |
| CATTCATTTGGAAGGAGACA+AGG | 0.489288 | 3.4:+87470703 | MS.gene013291:CDS |
| AGTATCACCAATTCACCATA+TGG | 0.491897 | 3.4:-87472611 | None:intergenic |
| ATTCGGCCACGCTCTATAAG+AGG | 0.492098 | 3.4:-87470256 | None:intergenic |
| GCGAATTCTCAGGAGGTAGT+TGG | 0.497708 | 3.4:+87469952 | MS.gene013291:CDS |
| TAAACATGTTTGATATTCAC+CGG | 0.505675 | 3.4:-87470591 | None:intergenic |
| TGAAGACAGAGAATTGGAAG+AGG | 0.509737 | 3.4:-87470859 | None:intergenic |
| AGTTGTCGAGGAAGGTTAGT+AGG | 0.511568 | 3.4:+87469653 | MS.gene013291:CDS |
| AGGGTCATTCCACAGGAGCT+TGG | 0.512498 | 3.4:+87469385 | MS.gene013291:CDS |
| TCGGCAAAAGATTCCGGATA+CGG | 0.515131 | 3.4:+87469798 | MS.gene013291:CDS |
| TTTGTGCATAGTTCCTCATA+GGG | 0.515256 | 3.4:+87469207 | MS.gene013291:CDS |
| CAAAAGCTTTGTGCATCAGT+CGG | 0.516161 | 3.4:+87469624 | MS.gene013291:CDS |
| ATACACCACGTTCCCTAGCT+CGG | 0.518490 | 3.4:-87469329 | None:intergenic |
| TGCGTCAGTGTTCCAAGGAA+AGG | 0.519685 | 3.4:-87470559 | None:intergenic |
| CTTAGTCGATTATACAAGCT+TGG | 0.519897 | 3.4:+87469907 | MS.gene013291:CDS |
| TACACCACGTTCCCTAGCTC+GGG | 0.520059 | 3.4:-87469328 | None:intergenic |
| TGAACCCATATTCCAATCAA+TGG | 0.520187 | 3.4:-87469298 | None:intergenic |
| CCAACAACAGAAACAAAACC+AGG | 0.521467 | 3.4:-87469358 | None:intergenic |
| CAGATACCCTGGATCAAAGC+CGG | 0.522628 | 3.4:+87470647 | MS.gene013291:CDS |
| ACTGGATGATGATCCTTCTA+GGG | 0.523784 | 3.4:+87469990 | MS.gene013291:CDS |
| ACACAATCTGTCAAGAGAAA+AGG | 0.523970 | 3.4:+87470048 | MS.gene013291:CDS |
| TTACTACAAGCAGTGAGAAA+AGG | 0.524086 | 3.4:+87470157 | MS.gene013291:CDS |
| TGTTGCCACTGCGCGCCATA+TGG | 0.524971 | 3.4:+87472596 | MS.gene013291:CDS |
| GTTCATCAGAATCCCGAGCT+AGG | 0.525484 | 3.4:+87469316 | MS.gene013291:CDS |
| TGCAGGCCACAAATGGCGAT+TGG | 0.526229 | 3.4:+87469691 | MS.gene013291:CDS |
| GCGTCAGTGTTCCAAGGAAA+GGG | 0.526254 | 3.4:-87470558 | None:intergenic |
| TTGGCAATGGGAGGCAGGGA+AGG | 0.526438 | 3.4:-87470786 | None:intergenic |
| GATCTTGTTGAATGGAGAAA+GGG | 0.534608 | 3.4:+87469229 | MS.gene013291:CDS |
| CCAATTCTCTGTCTTCACCA+AGG | 0.536737 | 3.4:+87470865 | MS.gene013291:CDS |
| CAAGAATATGCCGGTTTATG+GGG | 0.540204 | 3.4:+87470336 | MS.gene013291:CDS |
| TGTAATTGCATTCATTTGGA+AGG | 0.541118 | 3.4:+87470695 | MS.gene013291:CDS |
| GGAAGATGGTCCAATTCTAT+GGG | 0.557506 | 3.4:+87469420 | MS.gene013291:CDS |
| AACGTGGTGTATGTGATGCC+TGG | 0.559866 | 3.4:+87469340 | MS.gene013291:CDS |
| AGATACCCTGGATCAAAGCC+GGG | 0.560676 | 3.4:+87470648 | MS.gene013291:CDS |
| TTCATCAGAATCCCGAGCTA+GGG | 0.560905 | 3.4:+87469317 | MS.gene013291:CDS |
| TTCTGAAGACAAGCCTGGAA+AGG | 0.562004 | 3.4:+87470389 | MS.gene013291:CDS |
| TCCTAGATTGAGGGATGACG+AGG | 0.562895 | 3.4:+87469837 | MS.gene013291:CDS |
| ATATTTATCCTGGTTCAGCT+AGG | 0.564417 | 3.4:+87469521 | MS.gene013291:CDS |
| TTGCAAGTTAAGTCTTTGCA+AGG | 0.566086 | 3.4:-87470736 | None:intergenic |
| AAAGGGTGTGTGTTCTTACA+AGG | 0.566561 | 3.4:+87469246 | MS.gene013291:CDS |
| CCCAAAGGACCAAGCTCCTG+TGG | 0.567841 | 3.4:-87469394 | None:intergenic |
| GGTCGAATAGTGATATATGC+AGG | 0.569397 | 3.4:+87469674 | MS.gene013291:CDS |
| AAACATGTTTACACCGGTGA+GGG | 0.573686 | 3.4:+87470603 | MS.gene013291:CDS |
| GGGTTTGGAGTTGTCGAGGA+AGG | 0.575125 | 3.4:+87469645 | MS.gene013291:CDS |
| GCGATTGGAAATAATAATGG+AGG | 0.575282 | 3.4:+87469706 | MS.gene013291:CDS |
| CAAGAGCTTGAACTCTCTTG+TGG | 0.576041 | 3.4:+87469150 | MS.gene013291:CDS |
| ATTGGAAGAGGTAGGAAAGC+CGG | 0.576356 | 3.4:-87470847 | None:intergenic |
| GACAGAGAATTGGAAGAGGT+AGG | 0.577578 | 3.4:-87470855 | None:intergenic |
| TTGTAATATACTGTTGCTCG+AGG | 0.580020 | 3.4:+87469558 | MS.gene013291:CDS |
| ACCACTCGCAATACCCTCAC+CGG | 0.581038 | 3.4:-87470616 | None:intergenic |
| GCGAGCCCGGCTTTGATCCA+GGG | 0.582353 | 3.4:-87470653 | None:intergenic |
| GCATATTCTTGGTCAGCACT+GGG | 0.586024 | 3.4:-87470324 | None:intergenic |
| TGTGCCTGATTCTCTGTTCG+GGG | 0.600741 | 3.4:+87470014 | MS.gene013291:CDS |
| TCAATACACCTAGCTGAACC+AGG | 0.601363 | 3.4:-87469529 | None:intergenic |
| TCAGCACTGGGAACTCGCAA+TGG | 0.604696 | 3.4:-87470312 | None:intergenic |
| GAGTCTGCGTCAGTGTTCCA+AGG | 0.606735 | 3.4:-87470564 | None:intergenic |
| TCTTCAGAAGGCTTTCCTGG+AGG | 0.607041 | 3.4:-87470375 | None:intergenic |
| AAAATTGGCAATGGGAGGCA+GGG | 0.607188 | 3.4:-87470790 | None:intergenic |
| CACTGACGCAGACTCTATGC+CGG | 0.607244 | 3.4:+87470572 | MS.gene013291:CDS |
| TGATAGAAGAAAGTTGCTTG+AGG | 0.608396 | 3.4:+87469759 | MS.gene013291:CDS |
| GAATCCCGAGCTAGGGAACG+TGG | 0.613279 | 3.4:+87469324 | MS.gene013291:CDS |
| CATTCAACAAGATCCCTATG+AGG | 0.613850 | 3.4:-87469220 | None:intergenic |
| CAAGGAAAGGGTTCTGACGA+AGG | 0.614051 | 3.4:-87470546 | None:intergenic |
| AACTATCCTCTTATAGAGCG+TGG | 0.616388 | 3.4:+87470250 | MS.gene013291:CDS |
| ACCGGTGAGGGTATTGCGAG+TGG | 0.618049 | 3.4:+87470615 | MS.gene013291:CDS |
| AGTCGGGTTTGGAGTTGTCG+AGG | 0.619871 | 3.4:+87469641 | MS.gene013291:CDS |
| TCTCTGTTCGGGGAGGATGG+TGG | 0.622230 | 3.4:+87470024 | MS.gene013291:CDS |
| AAGTCTTTGCAAGGTCAGAA+CGG | 0.625525 | 3.4:-87470727 | None:intergenic |
| AGTGCTGACCAAGAATATGC+CGG | 0.626039 | 3.4:+87470327 | MS.gene013291:CDS |
| GGTTACGGGTTCAGATACCC+TGG | 0.628221 | 3.4:+87470636 | MS.gene013291:CDS |
| GGCTATTCCAGAAATATCTG+TGG | 0.633868 | 3.4:-87470074 | None:intergenic |
| CCTGAAACTCCTCATAAGAG+AGG | 0.640462 | 3.4:-87470428 | None:intergenic |
| GAATATGCCGGTTTATGGGG+AGG | 0.645792 | 3.4:+87470339 | MS.gene013291:CDS |
| AATATCAAACATGTTTACAC+CGG | 0.648293 | 3.4:+87470597 | MS.gene013291:CDS |
| CCTAGATTGAGGGATGACGA+GGG | 0.648877 | 3.4:+87469838 | MS.gene013291:CDS |
| ATTCATTTGGAAGGAGACAA+GGG | 0.650367 | 3.4:+87470704 | MS.gene013291:CDS |
| GCCTGATTCTCTGTTCGGGG+AGG | 0.659025 | 3.4:+87470017 | MS.gene013291:CDS |
| CAAACATGTTTACACCGGTG+AGG | 0.663493 | 3.4:+87470602 | MS.gene013291:CDS |
| GGCCGAATATGCACGACAGT+AGG | 0.675381 | 3.4:+87470271 | MS.gene013291:CDS |
| CTATAAGGCGAATTCTCAGG+AGG | 0.681470 | 3.4:+87469945 | MS.gene013291:CDS |
| TTAAATCGAGTAACACAACA+AGG | 0.681965 | 3.4:+87470202 | MS.gene013291:CDS |
| GGACCATCTTCCATACCCAA+AGG | 0.682357 | 3.4:-87469409 | None:intergenic |
| ATTCACCATATGGCGCGCAG+TGG | 0.698940 | 3.4:-87472601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTTTTTACAAT+TGG | + | chr3.4:87472140-87472159 | MS.gene013291:intron | 10.0% |
| !!! | ATAATGTATAGAACTTTTTT+GGG | - | chr3.4:87472560-87472579 | None:intergenic | 15.0% |
| !!! | TAATGTTTTTATATTTTTCC+CGG | - | chr3.4:87471163-87471182 | None:intergenic | 15.0% |
| !! | AATATACAGTTAGTAGAATA+TGG | + | chr3.4:87471518-87471537 | MS.gene013291:intron | 20.0% |
| !! | CAAAAAAATAATGCAAACAA+AGG | - | chr3.4:87471961-87471980 | None:intergenic | 20.0% |
| !! | TATTCTACTAACTGTATATT+TGG | - | chr3.4:87471518-87471537 | None:intergenic | 20.0% |
| !! | TGGATAAACAACTTAATTAA+GGG | + | chr3.4:87471652-87471671 | MS.gene013291:intron | 20.0% |
| !! | TTGGATAAACAACTTAATTA+AGG | + | chr3.4:87471651-87471670 | MS.gene013291:intron | 20.0% |
| !!! | ATGGTTTTATGATTGAAATT+TGG | + | chr3.4:87471011-87471030 | MS.gene013291:intron | 20.0% |
| !!! | CATAATGTATAGAACTTTTT+TGG | - | chr3.4:87472561-87472580 | None:intergenic | 20.0% |
| !!! | CTTAGATTTTTCACTATAAA+GGG | - | chr3.4:87472203-87472222 | None:intergenic | 20.0% |
| !!! | GCATATATGAAATTAGTTTA+TGG | + | chr3.4:87470992-87471011 | MS.gene013291:intron | 20.0% |
| !!! | TGGTTTTATGATTGAAATTT+GGG | + | chr3.4:87471012-87471031 | MS.gene013291:intron | 20.0% |
| ! | AATATCAAACATGTTTACAC+CGG | + | chr3.4:87470597-87470616 | MS.gene013291:CDS | 25.0% |
| ! | ATCTTCCTAGAATATGTTTA+AGG | - | chr3.4:87470098-87470117 | None:intergenic | 25.0% |
| ! | ATTACTGAAATTACTGAAGA+TGG | + | chr3.4:87471549-87471568 | MS.gene013291:intron | 25.0% |
| ! | ATTATTGCAAATACATCATC+AGG | - | chr3.4:87469082-87469101 | None:intergenic | 25.0% |
| ! | ATTGCAACCAAAATATTAGA+AGG | + | chr3.4:87470465-87470484 | MS.gene013291:CDS | 25.0% |
| ! | CCAGAACAAAATAAAAATGT+TGG | + | chr3.4:87469586-87469605 | MS.gene013291:CDS | 25.0% |
| ! | TAAACATGTTTGATATTCAC+CGG | - | chr3.4:87470594-87470613 | None:intergenic | 25.0% |
| ! | TATTTCATACATCGAAAGAT+TGG | - | chr3.4:87471885-87471904 | None:intergenic | 25.0% |
| ! | TTCACTATTATACAAACACT+AGG | - | chr3.4:87471101-87471120 | None:intergenic | 25.0% |
| ! | TTCATATATGCAATAGTTAG+AGG | - | chr3.4:87470983-87471002 | None:intergenic | 25.0% |
| !! | AAAGTATTTCATACATTCGA+CGG | - | chr3.4:87472000-87472019 | None:intergenic | 25.0% |
| !! | AATAGCCTTAAACATATTCT+AGG | + | chr3.4:87470090-87470109 | MS.gene013291:CDS | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr3.4:87471649-87471668 | None:intergenic | 25.0% |
| !! | GCTTAGATTTTTCACTATAA+AGG | - | chr3.4:87472204-87472223 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr3.4:87471648-87471667 | None:intergenic | 25.0% |
| !!! | AGAAAAAGCTAATTTGCTAA+AGG | - | chr3.4:87469740-87469759 | None:intergenic | 25.0% |
| !!! | CCAACATTTTTATTTTGTTC+TGG | - | chr3.4:87469589-87469608 | None:intergenic | 25.0% |
| !!! | GGTATTGATTATATTTATCC+TGG | + | chr3.4:87469511-87469530 | MS.gene013291:CDS | 25.0% |
| ACCAATTTAAACATGTGCTA+AGG | + | chr3.4:87471815-87471834 | MS.gene013291:intron | 30.0% | |
| ACCATTATTTCCTAGATTGA+GGG | + | chr3.4:87469828-87469847 | MS.gene013291:CDS | 30.0% | |
| ACTCAGATAGATCATATTGA+TGG | - | chr3.4:87471621-87471640 | None:intergenic | 30.0% | |
| ACTCTCTGTTGTAGTATAAA+TGG | + | chr3.4:87472513-87472532 | MS.gene013291:intron | 30.0% | |
| ACTTTCAAAATCACTACCTA+TGG | + | chr3.4:87471904-87471923 | MS.gene013291:intron | 30.0% | |
| AGATACGAAAAATTGGCAAT+GGG | - | chr3.4:87470801-87470820 | None:intergenic | 30.0% | |
| ATAAACATTGCTGAACCATT+AGG | - | chr3.4:87470510-87470529 | None:intergenic | 30.0% | |
| ATAGTGAAAAATCTAAGCCA+GGG | + | chr3.4:87472206-87472225 | MS.gene013291:intron | 30.0% | |
| ATCTTGTCTGTAGGATTAAT+AGG | + | chr3.4:87471043-87471062 | MS.gene013291:intron | 30.0% | |
| ATGGCGATTGGAAATAATAA+TGG | + | chr3.4:87469703-87469722 | MS.gene013291:CDS | 30.0% | |
| ATGGTGTAATTGCATTCATT+TGG | + | chr3.4:87470691-87470710 | MS.gene013291:CDS | 30.0% | |
| CTCTCTGTTGTAGTATAAAT+GGG | + | chr3.4:87472514-87472533 | MS.gene013291:intron | 30.0% | |
| CTTTGTCAGATACGAAAAAT+TGG | - | chr3.4:87470808-87470827 | None:intergenic | 30.0% | |
| GAAGATGAGCAAAGATTAAT+AGG | - | chr3.4:87470937-87470956 | None:intergenic | 30.0% | |
| TAAACATTGCTGAACCATTA+GGG | - | chr3.4:87470509-87470528 | None:intergenic | 30.0% | |
| TAGTAGTGAGATTGACTATA+AGG | + | chr3.4:87469930-87469949 | MS.gene013291:CDS | 30.0% | |
| TATAGTGAAAAATCTAAGCC+AGG | + | chr3.4:87472205-87472224 | MS.gene013291:intron | 30.0% | |
| TATCACTAATTCTTACAAGC+AGG | - | chr3.4:87471358-87471377 | None:intergenic | 30.0% | |
| TCCTTAGCACATGTTTAAAT+TGG | - | chr3.4:87471819-87471838 | None:intergenic | 30.0% | |
| TGACAGTATGATATTGTTCA+GGG | + | chr3.4:87471381-87471400 | MS.gene013291:intron | 30.0% | |
| TGGTTCAAAACAGTTAAAAC+TGG | + | chr3.4:87469972-87469991 | MS.gene013291:CDS | 30.0% | |
| TGTAATTGCATTCATTTGGA+AGG | + | chr3.4:87470695-87470714 | MS.gene013291:CDS | 30.0% | |
| TTAAATCGAGTAACACAACA+AGG | + | chr3.4:87470202-87470221 | MS.gene013291:CDS | 30.0% | |
| TTAATCTTTGCTCATCTTCA+TGG | + | chr3.4:87470938-87470957 | MS.gene013291:intron | 30.0% | |
| TTATCCACTTGTGTTTACAA+CGG | + | chr3.4:87472293-87472312 | MS.gene013291:intron | 30.0% | |
| TTCTGTATACAGCAAAGAAA+TGG | + | chr3.4:87471226-87471245 | MS.gene013291:intron | 30.0% | |
| TTGAAAGTTCAACCATTGAT+TGG | + | chr3.4:87469286-87469305 | MS.gene013291:CDS | 30.0% | |
| TTGACAGTATGATATTGTTC+AGG | + | chr3.4:87471380-87471399 | MS.gene013291:intron | 30.0% | |
| ! | AGAGTCAAACTATTTTCATG+AGG | + | chr3.4:87471727-87471746 | MS.gene013291:intron | 30.0% |
| ! | AGGATATCTTTATTTGCCTA+TGG | - | chr3.4:87471338-87471357 | None:intergenic | 30.0% |
| ! | ATATCTTTATTTGCCTATGG+TGG | - | chr3.4:87471335-87471354 | None:intergenic | 30.0% |
| ! | GATTTTTCTATCTTGTCTGT+AGG | + | chr3.4:87471034-87471053 | MS.gene013291:intron | 30.0% |
| ! | TCAACCATTGATTGGAATAT+GGG | + | chr3.4:87469294-87469313 | MS.gene013291:CDS | 30.0% |
| ! | TTCAACCATTGATTGGAATA+TGG | + | chr3.4:87469293-87469312 | MS.gene013291:CDS | 30.0% |
| ! | TTTACAACGGTCTTATAAAG+AGG | + | chr3.4:87472306-87472325 | MS.gene013291:intron | 30.0% |
| !! | AACAGTATGAAGTGTTTTCT+GGG | - | chr3.4:87472388-87472407 | None:intergenic | 30.0% |
| !! | AGAAAAGTTTGTTAACGTTC+CGG | + | chr3.4:87471141-87471160 | MS.gene013291:intron | 30.0% |
| !! | TTGCAAGAACTTTTGAAGAA+GGG | + | chr3.4:87470753-87470772 | MS.gene013291:CDS | 30.0% |
| !!! | CATGTTTTTTCTTCATGGAA+GGG | + | chr3.4:87469483-87469502 | MS.gene013291:CDS | 30.0% |
| !!! | GAAGTTATTGCTGATTTTGA+TGG | + | chr3.4:87469454-87469473 | MS.gene013291:CDS | 30.0% |
| !!! | TCGCTCTTTGTTTTTCATAA+TGG | + | chr3.4:87470672-87470691 | MS.gene013291:CDS | 30.0% |
| AAAACAGAAGCCCATAGAAT+TGG | - | chr3.4:87469433-87469452 | None:intergenic | 35.0% | |
| AAGCTGACATGTCAGATTTA+AGG | - | chr3.4:87470895-87470914 | None:intergenic | 35.0% | |
| ACACAATCTGTCAAGAGAAA+AGG | + | chr3.4:87470048-87470067 | MS.gene013291:CDS | 35.0% | |
| ACAGATTTCGACGGTTATAT+TGG | - | chr3.4:87472104-87472123 | None:intergenic | 35.0% | |
| ACTAGTATATTAGCAGGCTT+GGG | + | chr3.4:87472258-87472277 | MS.gene013291:intron | 35.0% | |
| AGAAAGAATAAAGCCTTTCC+AGG | - | chr3.4:87470405-87470424 | None:intergenic | 35.0% | |
| AGTAGTGTACTCTCAATCTT+TGG | - | chr3.4:87472442-87472461 | None:intergenic | 35.0% | |
| ATATTTATCCTGGTTCAGCT+AGG | + | chr3.4:87469521-87469540 | MS.gene013291:CDS | 35.0% | |
| ATTCATTTGGAAGGAGACAA+GGG | + | chr3.4:87470704-87470723 | MS.gene013291:CDS | 35.0% | |
| CACCAAAACTTTCACAAAGT+AGG | + | chr3.4:87471492-87471511 | MS.gene013291:intron | 35.0% | |
| CAGATACGAAAAATTGGCAA+TGG | - | chr3.4:87470802-87470821 | None:intergenic | 35.0% | |
| CATACATTCGACGGTTATAT+TGG | - | chr3.4:87471991-87472010 | None:intergenic | 35.0% | |
| CCTTCCATGAAGAAAAAACA+TGG | - | chr3.4:87469485-87469504 | None:intergenic | 35.0% | |
| CTCAGATTGCATATATCTCT+TGG | - | chr3.4:87469121-87469140 | None:intergenic | 35.0% | |
| CTTAGTCGATTATACAAGCT+TGG | + | chr3.4:87469907-87469926 | MS.gene013291:CDS | 35.0% | |
| GACCATTATTTCCTAGATTG+AGG | + | chr3.4:87469827-87469846 | MS.gene013291:CDS | 35.0% | |
| GATCTTGTTGAATGGAGAAA+GGG | + | chr3.4:87469229-87469248 | MS.gene013291:CDS | 35.0% | |
| GCATATATCTCTTGGTGAAA+AGG | - | chr3.4:87469113-87469132 | None:intergenic | 35.0% | |
| GCGATTGGAAATAATAATGG+AGG | + | chr3.4:87469706-87469725 | MS.gene013291:CDS | 35.0% | |
| GGGAAACTTTCAGAAAGATT+TGG | + | chr3.4:87469858-87469877 | MS.gene013291:CDS | 35.0% | |
| TCCCTCAATCTAGGAAATAA+TGG | - | chr3.4:87469832-87469851 | None:intergenic | 35.0% | |
| TGAACCCATATTCCAATCAA+TGG | - | chr3.4:87469301-87469320 | None:intergenic | 35.0% | |
| TGACATAAGCACTTGTGAAA+CGG | - | chr3.4:87471777-87471796 | None:intergenic | 35.0% | |
| TGATAGAAGAAAGTTGCTTG+AGG | + | chr3.4:87469759-87469778 | MS.gene013291:CDS | 35.0% | |
| TGTTTCTTTACAGGAAAGCA+CGG | + | chr3.4:87472234-87472253 | MS.gene013291:intron | 35.0% | |
| TTACTACAAGCAGTGAGAAA+AGG | + | chr3.4:87470157-87470176 | MS.gene013291:CDS | 35.0% | |
| TTATTTCCAATCGCCATTTG+TGG | - | chr3.4:87469700-87469719 | None:intergenic | 35.0% | |
| TTGCAAGTTAAGTCTTTGCA+AGG | - | chr3.4:87470739-87470758 | None:intergenic | 35.0% | |
| TTGTAATATACTGTTGCTCG+AGG | + | chr3.4:87469558-87469577 | MS.gene013291:CDS | 35.0% | |
| TTGTGGCATCTGAAAAAATC+TGG | + | chr3.4:87469167-87469186 | MS.gene013291:CDS | 35.0% | |
| TTTCTTCATGGAAGGGAAAA+GGG | + | chr3.4:87469490-87469509 | MS.gene013291:CDS | 35.0% | |
| TTTGTGCATAGTTCCTCATA+GGG | + | chr3.4:87469207-87469226 | MS.gene013291:CDS | 35.0% | |
| ! | CGTTAACAAACTTTTCTCAC+AGG | - | chr3.4:87471138-87471157 | None:intergenic | 35.0% |
| ! | GTGTGTGCCTTCTAATATTT+TGG | - | chr3.4:87470475-87470494 | None:intergenic | 35.0% |
| ! | TGTTCCTGCTGTCAAAATTT+TGG | - | chr3.4:87471851-87471870 | None:intergenic | 35.0% |
| ! | TGTTTCTGTTGTTGGTTGTA+GGG | + | chr3.4:87469366-87469385 | MS.gene013291:CDS | 35.0% |
| ! | TTTTCTTCATGGAAGGGAAA+AGG | + | chr3.4:87469489-87469508 | MS.gene013291:CDS | 35.0% |
| ! | TTTTGTGCATAGTTCCTCAT+AGG | + | chr3.4:87469206-87469225 | MS.gene013291:CDS | 35.0% |
| !! | AAGTTTGTTGTTGTGGCTTT+GGG | + | chr3.4:87471428-87471447 | MS.gene013291:intron | 35.0% |
| !! | CAACAGTATGAAGTGTTTTC+TGG | - | chr3.4:87472389-87472408 | None:intergenic | 35.0% |
| !! | CTTGCAAGAACTTTTGAAGA+AGG | + | chr3.4:87470752-87470771 | MS.gene013291:CDS | 35.0% |
| !! | GAAAAGTTTGTTAACGTTCC+GGG | + | chr3.4:87471142-87471161 | MS.gene013291:intron | 35.0% |
| !! | GTTCATGAAGTTTGTTGTTG+TGG | + | chr3.4:87471421-87471440 | MS.gene013291:intron | 35.0% |
| !! | TTGTCCAAAATTTTGACAGC+AGG | + | chr3.4:87471844-87471863 | MS.gene013291:intron | 35.0% |
| !! | TTGTTTCTGTTGTTGGTTGT+AGG | + | chr3.4:87469365-87469384 | MS.gene013291:CDS | 35.0% |
| !!! | CCATGTTTTTTCTTCATGGA+AGG | + | chr3.4:87469482-87469501 | MS.gene013291:CDS | 35.0% |
| !!! | TCTGCCATGTTTTTTCTTCA+TGG | + | chr3.4:87469478-87469497 | MS.gene013291:CDS | 35.0% |
| AAACATGTTTACACCGGTGA+GGG | + | chr3.4:87470603-87470622 | MS.gene013291:CDS | 40.0% | |
| AACCTACTGTCGTGCATATT+CGG | - | chr3.4:87470276-87470295 | None:intergenic | 40.0% | |
| AACTATCCTCTTATAGAGCG+TGG | + | chr3.4:87470250-87470269 | MS.gene013291:CDS | 40.0% | |
| AACTGGATGATGATCCTTCT+AGG | + | chr3.4:87469989-87470008 | MS.gene013291:CDS | 40.0% | |
| AAGACCGTTGTAAACACAAG+TGG | - | chr3.4:87472300-87472319 | None:intergenic | 40.0% | |
| AAGTCTTTGCAAGGTCAGAA+CGG | - | chr3.4:87470730-87470749 | None:intergenic | 40.0% | |
| ACATTCGACGGTTATATTGG+TGG | - | chr3.4:87471988-87472007 | None:intergenic | 40.0% | |
| ACTGCTTGTAGTAAGCTTCT+TGG | - | chr3.4:87470151-87470170 | None:intergenic | 40.0% | |
| ACTGGATGATGATCCTTCTA+GGG | + | chr3.4:87469990-87470009 | MS.gene013291:CDS | 40.0% | |
| AGGGTTGCATGTTTCTTTAC+AGG | + | chr3.4:87472225-87472244 | MS.gene013291:intron | 40.0% | |
| AGGTTACTACTAGCCAAGTT+CGG | + | chr3.4:87469779-87469798 | MS.gene013291:CDS | 40.0% | |
| AGTTGCGAAATTGTGATTGC+TGG | + | chr3.4:87472341-87472360 | MS.gene013291:intron | 40.0% | |
| ATCACAATTTCGCAACTACG+AGG | - | chr3.4:87472338-87472357 | None:intergenic | 40.0% | |
| ATCTCTTGGTGAAAAGGACT+TGG | - | chr3.4:87469107-87469126 | None:intergenic | 40.0% | |
| CACTAGTATATTAGCAGGCT+TGG | + | chr3.4:87472257-87472276 | MS.gene013291:intron | 40.0% | |
| CATTCAACAAGATCCCTATG+AGG | - | chr3.4:87469223-87469242 | None:intergenic | 40.0% | |
| CATTCATTTGGAAGGAGACA+AGG | + | chr3.4:87470703-87470722 | MS.gene013291:CDS | 40.0% | |
| CCAACAACAGAAACAAAACC+AGG | - | chr3.4:87469361-87469380 | None:intergenic | 40.0% | |
| CTAAGACAAGGAGTCTAAGA+AGG | - | chr3.4:87471310-87471329 | None:intergenic | 40.0% | |
| CTCATAGGGATCTTGTTGAA+TGG | + | chr3.4:87469221-87469240 | MS.gene013291:CDS | 40.0% | |
| CTCTCTTATGAGGAGTTTCA+GGG | + | chr3.4:87470429-87470448 | MS.gene013291:CDS | 40.0% | |
| CTTTCTTCTCCTCTCTTATG+AGG | + | chr3.4:87470419-87470438 | MS.gene013291:CDS | 40.0% | |
| GATTTCGACGGTTATATTGG+TGG | - | chr3.4:87472101-87472120 | None:intergenic | 40.0% | |
| GGAAGATGGTCCAATTCTAT+GGG | + | chr3.4:87469420-87469439 | MS.gene013291:CDS | 40.0% | |
| GGATCTTGTTGAATGGAGAA+AGG | + | chr3.4:87469228-87469247 | MS.gene013291:CDS | 40.0% | |
| GGCTATTCCAGAAATATCTG+TGG | - | chr3.4:87470077-87470096 | None:intergenic | 40.0% | |
| GGTCGAATAGTGATATATGC+AGG | + | chr3.4:87469674-87469693 | MS.gene013291:CDS | 40.0% | |
| GTGTCTTCAACAGATTTCGA+CGG | - | chr3.4:87472113-87472132 | None:intergenic | 40.0% | |
| TACAAACACTAGGTAGAGAG+AGG | - | chr3.4:87471091-87471110 | None:intergenic | 40.0% | |
| TACGAAAAATTGGCAATGGG+AGG | - | chr3.4:87470798-87470817 | None:intergenic | 40.0% | |
| TAGGAAATCACTGTGCTTTC+CGG | + | chr3.4:87471062-87471081 | MS.gene013291:intron | 40.0% | |
| TATCTGAGTAAGACCCTGTT+TGG | + | chr3.4:87471632-87471651 | MS.gene013291:intron | 40.0% | |
| TGAAGACAGAGAATTGGAAG+AGG | - | chr3.4:87470862-87470881 | None:intergenic | 40.0% | |
| TGACTATAAGGCGAATTCTC+AGG | + | chr3.4:87469942-87469961 | MS.gene013291:CDS | 40.0% | |
| TGATATATGCAGGCCACAAA+TGG | + | chr3.4:87469684-87469703 | MS.gene013291:CDS | 40.0% | |
| TGGAAGATGGTCCAATTCTA+TGG | + | chr3.4:87469419-87469438 | MS.gene013291:CDS | 40.0% | |
| TGGACATCGATCTTAGTTGA+TGG | + | chr3.4:87472160-87472179 | MS.gene013291:intron | 40.0% | |
| TGTAAAGAAACATGCAACCC+TGG | - | chr3.4:87472226-87472245 | None:intergenic | 40.0% | |
| TTTCACATTCGATGCGTTCA+AGG | - | chr3.4:87470232-87470251 | None:intergenic | 40.0% | |
| ! | AAAAGCTTTGTGCATCAGTC+GGG | + | chr3.4:87469625-87469644 | MS.gene013291:CDS | 40.0% |
| ! | AAAGGGTGTGTGTTCTTACA+AGG | + | chr3.4:87469246-87469265 | MS.gene013291:CDS | 40.0% |
| ! | AAGGCATCCACAGATATTTC+TGG | + | chr3.4:87470067-87470086 | MS.gene013291:CDS | 40.0% |
| ! | CAAAAGCTTTGTGCATCAGT+CGG | + | chr3.4:87469624-87469643 | MS.gene013291:CDS | 40.0% |
| ! | GGCCTACTTTGTGAAAGTTT+TGG | - | chr3.4:87471497-87471516 | None:intergenic | 40.0% |
| ! | GTCAGATTTAAGGCAAACCT+TGG | - | chr3.4:87470885-87470904 | None:intergenic | 40.0% |
| !! | ACCAAGAATATGCCGGTTTA+TGG | + | chr3.4:87470334-87470353 | MS.gene013291:CDS | 40.0% |
| !! | AGAAAGATTTGGTGCTCTTG+AGG | + | chr3.4:87469869-87469888 | MS.gene013291:CDS | 40.0% |
| !! | CAAGAATATGCCGGTTTATG+GGG | + | chr3.4:87470336-87470355 | MS.gene013291:CDS | 40.0% |
| !! | CCAAGAATATGCCGGTTTAT+GGG | + | chr3.4:87470335-87470354 | MS.gene013291:CDS | 40.0% |
| !! | GAAAGATTTGGTGCTCTTGA+GGG | + | chr3.4:87469870-87469889 | MS.gene013291:CDS | 40.0% |
| !! | GAAGTTTGTTGTTGTGGCTT+TGG | + | chr3.4:87471427-87471446 | MS.gene013291:intron | 40.0% |
| !!! | CCTGGTTTTGTTTCTGTTGT+TGG | + | chr3.4:87469358-87469377 | MS.gene013291:CDS | 40.0% |
| AAAAATTGGCAATGGGAGGC+AGG | - | chr3.4:87470794-87470813 | None:intergenic | 45.0% | |
| AAAATTGGCAATGGGAGGCA+GGG | - | chr3.4:87470793-87470812 | None:intergenic | 45.0% | |
| AAGATTCCGGATACGGTGTT+AGG | + | chr3.4:87469805-87469824 | MS.gene013291:CDS | 45.0% | |
| AAGCACATAGTCACAGCCAT+AGG | - | chr3.4:87472034-87472053 | None:intergenic | 45.0% | |
| AATGGTCCTAACACCGTATC+CGG | - | chr3.4:87469814-87469833 | None:intergenic | 45.0% | |
| ACTAGGTAGAGAGAGGAAAC+CGG | - | chr3.4:87471084-87471103 | None:intergenic | 45.0% | |
| AGTTGTCGAGGAAGGTTAGT+AGG | + | chr3.4:87469653-87469672 | MS.gene013291:CDS | 45.0% | |
| ATTGGAAGAGGTAGGAAAGC+CGG | - | chr3.4:87470850-87470869 | None:intergenic | 45.0% | |
| CAAACATGTTTACACCGGTG+AGG | + | chr3.4:87470602-87470621 | MS.gene013291:CDS | 45.0% | |
| CAAGAGCTTGAACTCTCTTG+TGG | + | chr3.4:87469150-87469169 | MS.gene013291:CDS | 45.0% | |
| CACGGCACTAGTATATTAGC+AGG | + | chr3.4:87472252-87472271 | MS.gene013291:intron | 45.0% | |
| CACTATGTCTTGCACCCTAA+TGG | + | chr3.4:87470492-87470511 | MS.gene013291:CDS | 45.0% | |
| CCAAGTTCGGCAAAAGATTC+CGG | + | chr3.4:87469792-87469811 | MS.gene013291:CDS | 45.0% | |
| CCAATTCTCTGTCTTCACCA+AGG | + | chr3.4:87470865-87470884 | MS.gene013291:CDS | 45.0% | |
| CCCATAAACCGGCATATTCT+TGG | - | chr3.4:87470338-87470357 | None:intergenic | 45.0% | |
| CCTCTCTTATGAGGAGTTTC+AGG | + | chr3.4:87470428-87470447 | MS.gene013291:CDS | 45.0% | |
| CCTGAAACTCCTCATAAGAG+AGG | - | chr3.4:87470431-87470450 | None:intergenic | 45.0% | |
| CCTTGGTGAAGACAGAGAAT+TGG | - | chr3.4:87470868-87470887 | None:intergenic | 45.0% | |
| CCTTGTCTTAGTTCCACCAT+AGG | + | chr3.4:87471319-87471338 | MS.gene013291:intron | 45.0% | |
| CTATAAGGCGAATTCTCAGG+AGG | + | chr3.4:87469945-87469964 | MS.gene013291:CDS | 45.0% | |
| GACAGAGAATTGGAAGAGGT+AGG | - | chr3.4:87470858-87470877 | None:intergenic | 45.0% | |
| GCATATTCTTGGTCAGCACT+GGG | - | chr3.4:87470327-87470346 | None:intergenic | 45.0% | |
| TCAATACACCTAGCTGAACC+AGG | - | chr3.4:87469532-87469551 | None:intergenic | 45.0% | |
| TCGGCAAAAGATTCCGGATA+CGG | + | chr3.4:87469798-87469817 | MS.gene013291:CDS | 45.0% | |
| TCGTACTCGAATGTGTTTGC+CGG | + | chr3.4:87470828-87470847 | MS.gene013291:CDS | 45.0% | |
| TGAAAAACAAAGAGCGAGCC+CGG | - | chr3.4:87470669-87470688 | None:intergenic | 45.0% | |
| TTCATCAGAATCCCGAGCTA+GGG | + | chr3.4:87469317-87469336 | MS.gene013291:CDS | 45.0% | |
| TTGTCTTCAGAAGGCTTTCC+TGG | - | chr3.4:87470381-87470400 | None:intergenic | 45.0% | |
| TTTCCAGGCTTGTCTTCAGA+AGG | - | chr3.4:87470390-87470409 | None:intergenic | 45.0% | |
| ! | CCTATGGTGGAACTAAGACA+AGG | - | chr3.4:87471322-87471341 | None:intergenic | 45.0% |
| ! | GTACGTGTTGCAAGGCTTTT+TGG | + | chr3.4:87471577-87471596 | MS.gene013291:intron | 45.0% |
| ! | TGGAAAGTGTACGTGTTGCA+AGG | + | chr3.4:87471569-87471588 | MS.gene013291:intron | 45.0% |
| ! | TTCTGAAGACAAGCCTGGAA+AGG | + | chr3.4:87470389-87470408 | MS.gene013291:CDS | 45.0% |
| !! | AAAAGCACCTCCCCATAAAC+CGG | - | chr3.4:87470349-87470368 | None:intergenic | 45.0% |
| !! | AGTGCTGACCAAGAATATGC+CGG | + | chr3.4:87470327-87470346 | MS.gene013291:CDS | 45.0% |
| AACGTGGTGTATGTGATGCC+TGG | + | chr3.4:87469340-87469359 | MS.gene013291:CDS | 50.0% | |
| AGATACCCTGGATCAAAGCC+GGG | + | chr3.4:87470648-87470667 | MS.gene013291:CDS | 50.0% | |
| ATACACCACGTTCCCTAGCT+CGG | - | chr3.4:87469332-87469351 | None:intergenic | 50.0% | |
| ATTCGGCCACGCTCTATAAG+AGG | - | chr3.4:87470259-87470278 | None:intergenic | 50.0% | |
| CAGATACCCTGGATCAAAGC+CGG | + | chr3.4:87470647-87470666 | MS.gene013291:CDS | 50.0% | |
| CCTAGATTGAGGGATGACGA+GGG | + | chr3.4:87469838-87469857 | MS.gene013291:CDS | 50.0% | |
| CTGTGCCTGATTCTCTGTTC+GGG | + | chr3.4:87470013-87470032 | MS.gene013291:CDS | 50.0% | |
| CTTCGTCAGAACCCTTTCCT+TGG | + | chr3.4:87470547-87470566 | MS.gene013291:CDS | 50.0% | |
| CTTTGTGCATCAGTCGGGTT+TGG | + | chr3.4:87469630-87469649 | MS.gene013291:CDS | 50.0% | |
| GCGAATTCTCAGGAGGTAGT+TGG | + | chr3.4:87469952-87469971 | MS.gene013291:CDS | 50.0% | |
| GCGTCAGTGTTCCAAGGAAA+GGG | - | chr3.4:87470561-87470580 | None:intergenic | 50.0% | |
| GCTGTGCCTGATTCTCTGTT+CGG | + | chr3.4:87470012-87470031 | MS.gene013291:CDS | 50.0% | |
| GGACCATCTTCCATACCCAA+AGG | - | chr3.4:87469412-87469431 | None:intergenic | 50.0% | |
| GGCATATTCTTGGTCAGCAC+TGG | - | chr3.4:87470328-87470347 | None:intergenic | 50.0% | |
| GGTCCTTTGGGTATGGAAGA+TGG | + | chr3.4:87469406-87469425 | MS.gene013291:CDS | 50.0% | |
| GTTCATCAGAATCCCGAGCT+AGG | + | chr3.4:87469316-87469335 | MS.gene013291:CDS | 50.0% | |
| TCCTAGATTGAGGGATGACG+AGG | + | chr3.4:87469837-87469856 | MS.gene013291:CDS | 50.0% | |
| TCTTCAGAAGGCTTTCCTGG+AGG | - | chr3.4:87470378-87470397 | None:intergenic | 50.0% | |
| TGCGTCAGTGTTCCAAGGAA+AGG | - | chr3.4:87470562-87470581 | None:intergenic | 50.0% | |
| TGGTTGTAGGGTCATTCCAC+AGG | + | chr3.4:87469378-87469397 | MS.gene013291:CDS | 50.0% | |
| TGTGCCTGATTCTCTGTTCG+GGG | + | chr3.4:87470014-87470033 | MS.gene013291:CDS | 50.0% | |
| ! | AAGCCTTCTGAAGACAAGCC+TGG | + | chr3.4:87470384-87470403 | MS.gene013291:CDS | 50.0% |
| ! | CAAGGAAAGGGTTCTGACGA+AGG | - | chr3.4:87470549-87470568 | None:intergenic | 50.0% |
| ! | CCGGAATCTTTTGCCGAACT+TGG | - | chr3.4:87469795-87469814 | None:intergenic | 50.0% |
| ! | TGCTGGAGTTGCTTTGCTTC+TGG | + | chr3.4:87472358-87472377 | MS.gene013291:intron | 50.0% |
| !! | AGGGTATTGCGAGTGGTTAC+GGG | + | chr3.4:87470622-87470641 | MS.gene013291:CDS | 50.0% |
| !! | GAATATGCCGGTTTATGGGG+AGG | + | chr3.4:87470339-87470358 | MS.gene013291:CDS | 50.0% |
| !! | GAGGGTATTGCGAGTGGTTA+CGG | + | chr3.4:87470621-87470640 | MS.gene013291:CDS | 50.0% |
| !!! | GGTTTATGGGGAGGTGCTTT+TGG | + | chr3.4:87470348-87470367 | MS.gene013291:CDS | 50.0% |
| ACCACTCGCAATACCCTCAC+CGG | - | chr3.4:87470619-87470638 | None:intergenic | 55.0% | |
| AGCAGCACAGTCACAGCCAT+AGG | - | chr3.4:87471923-87471942 | None:intergenic | 55.0% | |
| AGGGTCATTCCACAGGAGCT+TGG | + | chr3.4:87469385-87469404 | MS.gene013291:CDS | 55.0% | |
| CACTGACGCAGACTCTATGC+CGG | + | chr3.4:87470572-87470591 | MS.gene013291:CDS | 55.0% | |
| CCACAGGAGCTTGGTCCTTT+GGG | + | chr3.4:87469394-87469413 | MS.gene013291:CDS | 55.0% | |
| CCCTCGTCATCCCTCAATCT+AGG | - | chr3.4:87469841-87469860 | None:intergenic | 55.0% | |
| GAATCAGGCACAGCCCTAGA+AGG | - | chr3.4:87470006-87470025 | None:intergenic | 55.0% | |
| GAGTCTGCGTCAGTGTTCCA+AGG | - | chr3.4:87470567-87470586 | None:intergenic | 55.0% | |
| GATTCTCTGTTCGGGGAGGA+TGG | + | chr3.4:87470021-87470040 | MS.gene013291:CDS | 55.0% | |
| GGAGCTTGGTCCTTTGGGTA+TGG | + | chr3.4:87469399-87469418 | MS.gene013291:CDS | 55.0% | |
| GGCCGAATATGCACGACAGT+AGG | + | chr3.4:87470271-87470290 | MS.gene013291:CDS | 55.0% | |
| GGTTACGGGTTCAGATACCC+TGG | + | chr3.4:87470636-87470655 | MS.gene013291:CDS | 55.0% | |
| TACACCACGTTCCCTAGCTC+GGG | - | chr3.4:87469331-87469350 | None:intergenic | 55.0% | |
| TCCACAGGAGCTTGGTCCTT+TGG | + | chr3.4:87469393-87469412 | MS.gene013291:CDS | 55.0% | |
| TCCTCCCCGAACAGAGAATC+AGG | - | chr3.4:87470021-87470040 | None:intergenic | 55.0% | |
| TGCAGGCCACAAATGGCGAT+TGG | + | chr3.4:87469691-87469710 | MS.gene013291:CDS | 55.0% | |
| ! | AGTCGGGTTTGGAGTTGTCG+AGG | + | chr3.4:87469641-87469660 | MS.gene013291:CDS | 55.0% |
| ! | GGGTTTGGAGTTGTCGAGGA+AGG | + | chr3.4:87469645-87469664 | MS.gene013291:CDS | 55.0% |
| ! | TCAGCACTGGGAACTCGCAA+TGG | - | chr3.4:87470315-87470334 | None:intergenic | 55.0% |
| !!! | TATGGGGAGGTGCTTTTGGC+TGG | + | chr3.4:87470352-87470371 | MS.gene013291:CDS | 55.0% |
| CCCAAAGGACCAAGCTCCTG+TGG | - | chr3.4:87469397-87469416 | None:intergenic | 60.0% | |
| GAATCCCGAGCTAGGGAACG+TGG | + | chr3.4:87469324-87469343 | MS.gene013291:CDS | 60.0% | |
| GCCTGATTCTCTGTTCGGGG+AGG | + | chr3.4:87470017-87470036 | MS.gene013291:CDS | 60.0% | |
| TCTCTGTTCGGGGAGGATGG+TGG | + | chr3.4:87470024-87470043 | MS.gene013291:CDS | 60.0% | |
| TGTTGCCACTGCGCGCCATA+TGG | + | chr3.4:87472596-87472615 | MS.gene013291:CDS | 60.0% | |
| TTGGCAATGGGAGGCAGGGA+AGG | - | chr3.4:87470789-87470808 | None:intergenic | 60.0% | |
| !! | ACCGGTGAGGGTATTGCGAG+TGG | + | chr3.4:87470615-87470634 | MS.gene013291:CDS | 60.0% |
| ! | AGCGAGCCCGGCTTTGATCC+AGG | - | chr3.4:87470657-87470676 | None:intergenic | 65.0% |
| ! | GCGAGCCCGGCTTTGATCCA+GGG | - | chr3.4:87470656-87470675 | None:intergenic | 65.0% |
| !!! | GGTGCTTTTGGCTGGCCTCC+AGG | + | chr3.4:87470360-87470379 | MS.gene013291:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 87469064 | 87472621 | 87469064 | ID=MS.gene013291 |
| chr3.4 | mRNA | 87469064 | 87472621 | 87469064 | ID=MS.gene013291.t1;Parent=MS.gene013291 |
| chr3.4 | exon | 87469064 | 87470886 | 87469064 | ID=MS.gene013291.t1.exon1;Parent=MS.gene013291.t1 |
| chr3.4 | CDS | 87469064 | 87470886 | 87469064 | ID=cds.MS.gene013291.t1;Parent=MS.gene013291.t1 |
| chr3.4 | exon | 87472594 | 87472621 | 87472594 | ID=MS.gene013291.t1.exon2;Parent=MS.gene013291.t1 |
| chr3.4 | CDS | 87472594 | 87472621 | 87472594 | ID=cds.MS.gene013291.t1;Parent=MS.gene013291.t1 |
| Gene Sequence |
| Protein sequence |
