Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49700.t1 | RHN43144.1 | 92.9 | 693 | 48 | 1 | 1 | 693 | 1 | 692 | 0.00E+00 | 1100.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49700.t1 | Q8RWD6 | 39.9 | 697 | 263 | 11 | 11 | 691 | 16 | 572 | 1.6e-134 | 481.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49700.t1 | A0A396GUI7 | 92.9 | 693 | 48 | 1 | 1 | 693 | 1 | 692 | 0.0e+00 | 1100.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene49700 | 0.806342 | 8.62E-50 | -1.69E-46 |
| MS.gene051226 | MS.gene49700 | 0.802557 | 5.30E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene49700 | 0.840063 | 1.09E-57 | -1.69E-46 |
| MS.gene054892 | MS.gene49700 | 0.824937 | 6.16E-54 | -1.69E-46 |
| MS.gene054893 | MS.gene49700 | 0.82639 | 2.79E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene49700 | 0.805032 | 1.62E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49700 | MS.gene40916 | PPI |
| MS.gene49700 | MS.gene06374 | PPI |
| MS.gene49700 | MS.gene70188 | PPI |
| MS.gene70188 | MS.gene49700 | PPI |
| MS.gene49700 | MS.gene049252 | PPI |
| MS.gene49700 | MS.gene030591 | PPI |
| MS.gene030587 | MS.gene49700 | PPI |
| MS.gene49700 | MS.gene49697 | PPI |
| MS.gene49700 | MS.gene70191 | PPI |
| MS.gene49700 | MS.gene013291 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49700.t1 | MTR_8g094190 | 79.076 | 693 | 81 | 7 | 1 | 693 | 1 | 629 | 0.0 | 1080 |
| MS.gene49700.t1 | MTR_8g094150 | 72.543 | 641 | 88 | 8 | 60 | 693 | 7 | 566 | 0.0 | 860 |
| MS.gene49700.t1 | MTR_3g096670 | 51.546 | 388 | 137 | 7 | 10 | 358 | 3 | 378 | 2.73e-122 | 378 |
| MS.gene49700.t1 | MTR_3g096670 | 70.563 | 231 | 68 | 0 | 462 | 692 | 370 | 600 | 7.16e-110 | 345 |
| MS.gene49700.t1 | MTR_3g096670 | 51.546 | 388 | 137 | 7 | 10 | 358 | 3 | 378 | 5.81e-122 | 377 |
| MS.gene49700.t1 | MTR_3g096670 | 70.563 | 231 | 68 | 0 | 462 | 692 | 370 | 600 | 9.40e-110 | 345 |
| MS.gene49700.t1 | MTR_0095s0110 | 92.818 | 181 | 13 | 0 | 513 | 693 | 1 | 181 | 5.85e-119 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49700.t1 | AT5G39450 | 44.970 | 338 | 156 | 9 | 11 | 334 | 16 | 337 | 3.23e-85 | 280 |
| MS.gene49700.t1 | AT5G39450 | 54.386 | 228 | 98 | 2 | 467 | 692 | 350 | 573 | 1.03e-75 | 254 |
| MS.gene49700.t1 | AT5G39460 | 45.482 | 332 | 161 | 7 | 11 | 334 | 9 | 328 | 3.14e-79 | 263 |
| MS.gene49700.t1 | AT5G39460 | 49.130 | 230 | 104 | 5 | 467 | 692 | 341 | 561 | 7.04e-62 | 217 |
| MS.gene49700.t1 | AT5G39490 | 50.758 | 264 | 110 | 5 | 11 | 262 | 8 | 263 | 6.98e-76 | 254 |
| MS.gene49700.t1 | AT5G39490 | 46.121 | 232 | 119 | 2 | 464 | 693 | 330 | 557 | 6.60e-63 | 219 |
| MS.gene49700.t1 | AT5G39480 | 50.758 | 264 | 110 | 5 | 11 | 262 | 9 | 264 | 1.70e-75 | 253 |
| MS.gene49700.t1 | AT5G39480 | 50.215 | 233 | 108 | 3 | 464 | 692 | 330 | 558 | 2.26e-67 | 232 |
| MS.gene49700.t1 | AT5G39470 | 37.234 | 94 | 34 | 1 | 11 | 104 | 93 | 161 | 2.56e-14 | 72.0 |
Find 125 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAACCATTGCTTGGTATT+TGG | 0.167263 | 4.4:-8108622 | MS.gene49700:CDS |
| CCTCAGGAGGTTGTCTCTTT+AGG | 0.169927 | 4.4:-8108521 | MS.gene49700:CDS |
| ACCAAGTGTATGCTGGTTTA+TGG | 0.195342 | 4.4:-8107326 | MS.gene49700:CDS |
| TTGTATTCAGATTGAAAATA+AGG | 0.221115 | 4.4:-8108090 | MS.gene49700:CDS |
| TAGATTAGAGGTTCCTAATA+TGG | 0.222044 | 4.4:-8108231 | MS.gene49700:CDS |
| TGAAAACTTCTCTGGGAATT+AGG | 0.230889 | 4.4:+8108804 | None:intergenic |
| CTCAGGAGGTTGTCTCTTTA+GGG | 0.245616 | 4.4:-8108520 | MS.gene49700:CDS |
| GGTTTATGGGGCGGTACTTT+TGG | 0.253329 | 4.4:-8107312 | MS.gene49700:CDS |
| TAAACCATTGCTTGGTATTT+GGG | 0.255038 | 4.4:-8108621 | MS.gene49700:CDS |
| CTAAAACCCAACTTCCTAAA+AGG | 0.271655 | 4.4:+8108293 | None:intergenic |
| TCCCTCTTTGTACTTCAAAA+TGG | 0.282347 | 4.4:-8106988 | MS.gene49700:CDS |
| GCATACACTTGGTCTTCTTT+AGG | 0.294855 | 4.4:+8107336 | None:intergenic |
| AATGGTCCAGTTCCCATATT+AGG | 0.301762 | 4.4:+8108218 | None:intergenic |
| TTGCATCTTCTGAGAAAGTT+TGG | 0.305192 | 4.4:-8108748 | MS.gene49700:CDS |
| GGTGGCTTTAAACATATCTT+TGG | 0.314186 | 4.4:-8107912 | MS.gene49700:CDS |
| GAAGGTATTGCAAGTGGTTA+TGG | 0.318562 | 4.4:-8107039 | MS.gene49700:CDS |
| TCCAAGATTGTTCTATCCTT+TGG | 0.318701 | 4.4:-8108496 | MS.gene49700:CDS |
| CTAGATCTTCGATGGTTACT+TGG | 0.335719 | 4.4:+8107825 | None:intergenic |
| CTTGCAAGTTAAGTCTTTGC+AGG | 0.339370 | 4.4:+8106923 | None:intergenic |
| CTTCTTCTGATCCGTTTCCT+TGG | 0.339771 | 4.4:-8107113 | MS.gene49700:CDS |
| CCAAGTGTATGCTGGTTTAT+GGG | 0.343323 | 4.4:-8107325 | MS.gene49700:CDS |
| CGTTTCCTTGGGAAACTGAT+AGG | 0.346496 | 4.4:-8107101 | MS.gene49700:CDS |
| ACTAAGATTGAAAACTTCTC+TGG | 0.349744 | 4.4:+8108796 | None:intergenic |
| CACAACACGGCCGCAGGAAC+TGG | 0.352037 | 4.4:-8107543 | MS.gene49700:CDS |
| CACTAGCCAAGTTAGATTAG+AGG | 0.355121 | 4.4:-8108243 | MS.gene49700:CDS |
| AGTATGTTCAATGGAATTAG+AGG | 0.363663 | 4.4:-8108048 | MS.gene49700:CDS |
| ACAGAATCATCTCTTGATCT+AGG | 0.368549 | 4.4:+8108191 | None:intergenic |
| TTCTTCTGATCCGTTTCCTT+GGG | 0.370545 | 4.4:-8107112 | MS.gene49700:CDS |
| TAAACAAGATTACCAAGTTC+AGG | 0.378819 | 4.4:+8108587 | None:intergenic |
| AAATATCCAGGAGCAAAATC+TGG | 0.380597 | 4.4:-8107012 | MS.gene49700:CDS |
| ATGGCGATCTTGCCTTTGTT+TGG | 0.382428 | 4.4:-8106969 | MS.gene49700:CDS |
| CGCTATGCATTGCATCCTAA+TGG | 0.401483 | 4.4:-8107168 | MS.gene49700:CDS |
| AAGAGCATTCCTTGTTCAAA+TGG | 0.407584 | 4.4:-8108132 | MS.gene49700:CDS |
| ATAAACATTGCTGAACCATT+AGG | 0.413798 | 4.4:+8107153 | None:intergenic |
| ACCAAAGGATAGAACAATCT+TGG | 0.422539 | 4.4:+8108495 | None:intergenic |
| GAGGTTCCTAATATGGGAAC+TGG | 0.435900 | 4.4:-8108224 | MS.gene49700:CDS |
| CAGCATCACAAAATGATTGC+TGG | 0.437173 | 4.4:-8107627 | MS.gene49700:CDS |
| AGATTAGAGGTTCCTAATAT+GGG | 0.437762 | 4.4:-8108230 | MS.gene49700:CDS |
| GGACATGAATCAAGAGGATA+AGG | 0.438645 | 4.4:+8108872 | None:intergenic |
| ATGTGTTTGCCACAGTTTCA+AGG | 0.439794 | 4.4:-8108829 | MS.gene49700:CDS |
| GCTTTGCATTCTTTATCTCA+TGG | 0.448007 | 4.4:+8107493 | None:intergenic |
| CTGCAATGCAACACGATGGC+AGG | 0.458482 | 4.4:-8107771 | MS.gene49700:CDS |
| AATCTTGTTTATGTAATGCC+AGG | 0.464568 | 4.4:-8108575 | MS.gene49700:CDS |
| CGATCTTGCCTTTGTTTGGA+AGG | 0.465116 | 4.4:-8106965 | MS.gene49700:CDS |
| CAAGGATCTAGTGCAATTGA+TGG | 0.475835 | 4.4:-8107591 | MS.gene49700:CDS |
| GGTTATGGTTTCAAATATCC+AGG | 0.478786 | 4.4:-8107024 | MS.gene49700:CDS |
| AATGGAATTAGAGGTTGATC+AGG | 0.481928 | 4.4:-8108039 | MS.gene49700:CDS |
| GGCCGAATATGAACAAAAGT+TGG | 0.487071 | 4.4:-8107389 | MS.gene49700:CDS |
| GCTTGTAAACACATTTAAGC+AGG | 0.488155 | 4.4:+8106831 | None:intergenic |
| ACTGTGGCAAACACATCATC+TGG | 0.489039 | 4.4:+8108836 | None:intergenic |
| CCCATAAACCAGCATACACT+TGG | 0.497925 | 4.4:+8107325 | None:intergenic |
| GTGTCACTATCCTTATTGCT+TGG | 0.500008 | 4.4:+8107975 | None:intergenic |
| TTGAGTGTTAAACCATTGCT+TGG | 0.500161 | 4.4:-8108629 | MS.gene49700:CDS |
| AAGGGACAACAACTTCTCAT+TGG | 0.500982 | 4.4:-8107213 | MS.gene49700:CDS |
| TCACTATCCTTATTGCTTGG+AGG | 0.505487 | 4.4:+8107978 | None:intergenic |
| CTATCAGTTTCCCAAGGAAA+CGG | 0.510000 | 4.4:+8107102 | None:intergenic |
| TTGCAATTTATTGTTGCTTG+AGG | 0.520647 | 4.4:-8108354 | MS.gene49700:CDS |
| CTAAGATTGAAAACTTCTCT+GGG | 0.523415 | 4.4:+8108797 | None:intergenic |
| AGGGGAAGAAGTATGTTCAA+TGG | 0.525453 | 4.4:-8108057 | MS.gene49700:CDS |
| GTTCAACAGAATCCTGAACT+TGG | 0.526928 | 4.4:-8108599 | MS.gene49700:CDS |
| GAAAATAAGGAAAATTCTCA+AGG | 0.528849 | 4.4:-8108077 | MS.gene49700:CDS |
| TAGGAACCTCTAATCTAACT+TGG | 0.531329 | 4.4:+8108237 | None:intergenic |
| GGAACTGGAGAGAATGACAT+AGG | 0.532645 | 4.4:-8107528 | MS.gene49700:CDS |
| GAAATTGTTTGCGATTTCGA+TGG | 0.532974 | 4.4:-8108461 | MS.gene49700:CDS |
| CACTCAAAGACCTTGTTGAG+TGG | 0.537136 | 4.4:-8108694 | MS.gene49700:CDS |
| AAAGAAGACCAAGTGTATGC+TGG | 0.538643 | 4.4:-8107333 | MS.gene49700:CDS |
| ATGGCTCAAATGTATAAGCT+TGG | 0.541711 | 4.4:-8108113 | MS.gene49700:CDS |
| CAAGGAAACGGATCAGAAGA+AGG | 0.543211 | 4.4:+8107114 | None:intergenic |
| GCTCTCGTATTGGGAGTCGA+AGG | 0.543524 | 4.4:-8107232 | MS.gene49700:CDS |
| ATCAAGAGAAAGAGTCTTGG+TGG | 0.546154 | 4.4:-8107945 | MS.gene49700:CDS |
| ACAAGAGACGATCAAAGATC+TGG | 0.547199 | 4.4:-8107747 | MS.gene49700:CDS |
| CACACTTTCTCCACTCAACA+AGG | 0.552835 | 4.4:+8108684 | None:intergenic |
| CTTCATGGAAGGGAAGAAGA+GGG | 0.555957 | 4.4:-8108422 | MS.gene49700:CDS |
| CAAGTGTATGCTGGTTTATG+GGG | 0.561849 | 4.4:-8107324 | MS.gene49700:CDS |
| CAGCAACACAACACGGCCGC+AGG | 0.567323 | 4.4:-8107549 | MS.gene49700:CDS |
| TGAATCAAGAGGATAAGGGT+AGG | 0.569984 | 4.4:+8108877 | None:intergenic |
| CTCTCGTATTGGGAGTCGAA+GGG | 0.570981 | 4.4:-8107231 | MS.gene49700:CDS |
| CATCAATACATCACAACCGC+AGG | 0.571677 | 4.4:-8107849 | MS.gene49700:CDS |
| TTGCAAGTTAAGTCTTTGCA+GGG | 0.574271 | 4.4:+8106924 | None:intergenic |
| CTCTAATCTAACTTGGCTAG+TGG | 0.577216 | 4.4:+8108244 | None:intergenic |
| AGCGTGTCGAATAATACCTC+AGG | 0.579720 | 4.4:-8108537 | MS.gene49700:CDS |
| GCTGGAACAATAGATGATCA+AGG | 0.580133 | 4.4:-8107609 | MS.gene49700:CDS |
| TGCATCAAGAGAAAGAGTCT+TGG | 0.581200 | 4.4:-8107948 | MS.gene49700:CDS |
| AAAATAAGGAAAATTCTCAA+GGG | 0.585290 | 4.4:-8108076 | MS.gene49700:CDS |
| TTGTCAATAGGAGGCAGAGA+AGG | 0.586071 | 4.4:+8106874 | None:intergenic |
| ACATTTGAGCCATTTGAACA+AGG | 0.588906 | 4.4:+8108123 | None:intergenic |
| GAATCAAGAGGATAAGGGTA+GGG | 0.590042 | 4.4:+8108878 | None:intergenic |
| CGAAGATCTAGTACAATCGA+TGG | 0.590437 | 4.4:-8107669 | MS.gene49700:CDS |
| AATATTGATAACACTGCCAT+CGG | 0.591140 | 4.4:+8107719 | None:intergenic |
| AAGGATCTAGTGCAATTGAT+GGG | 0.592054 | 4.4:-8107590 | MS.gene49700:CDS |
| CGGTCGAACTAGATCTTCGA+TGG | 0.597888 | 4.4:+8107817 | None:intergenic |
| GGGATAGATTGTGTTTACCA+TGG | 0.598432 | 4.4:-8108401 | MS.gene49700:CDS |
| GAACTGGAGAGAATGACATA+GGG | 0.599521 | 4.4:-8107527 | MS.gene49700:CDS |
| GTCATTCTCTCCAGTTCCTG+CGG | 0.600499 | 4.4:+8107533 | None:intergenic |
| GCGGGAGAAGGTATTGCAAG+TGG | 0.601335 | 4.4:-8107045 | MS.gene49700:CDS |
| TCTAGATTCCTTCCAAACAA+AGG | 0.601462 | 4.4:+8106957 | None:intergenic |
| CGATTGTACTAGATCTTCGA+TGG | 0.602215 | 4.4:+8107673 | None:intergenic |
| TCTTCTTTAGGAACTTGCAA+AGG | 0.603983 | 4.4:+8107348 | None:intergenic |
| TAGAAAACAAGATAATAATG+AGG | 0.608877 | 4.4:-8108324 | MS.gene49700:CDS |
| TCTTCATGGAAGGGAAGAAG+AGG | 0.609061 | 4.4:-8108423 | MS.gene49700:CDS |
| TGCAATGCAACACGATGGCA+GGG | 0.609989 | 4.4:-8107770 | MS.gene49700:CDS |
| GACATGAATCAAGAGGATAA+GGG | 0.610930 | 4.4:+8108873 | None:intergenic |
| AATATTGACAGCACTGCCAT+CGG | 0.613779 | 4.4:+8107797 | None:intergenic |
| TCTCTTGATCTAGGAAACAA+TGG | 0.618009 | 4.4:+8108200 | None:intergenic |
| GCTACAACAGAAACAAAACC+TGG | 0.618777 | 4.4:+8108557 | None:intergenic |
| TGAACCCAAATACCAAGCAA+TGG | 0.622950 | 4.4:+8108617 | None:intergenic |
| TTTCAAACACAGGTGACCAA+AGG | 0.627505 | 4.4:+8108480 | None:intergenic |
| CGAAGATCTAGTTCGACCGA+TGG | 0.627815 | 4.4:-8107813 | MS.gene49700:CDS |
| GTGTATGCTGGTTTATGGGG+CGG | 0.628467 | 4.4:-8107321 | MS.gene49700:CDS |
| CAAAGATCTGGTACAACCGA+TGG | 0.633916 | 4.4:-8107735 | MS.gene49700:CDS |
| CCTAAAGAGACAACCTCCTG+AGG | 0.640779 | 4.4:+8108521 | None:intergenic |
| TTCATGGAAGGGAAGAAGAG+GGG | 0.641033 | 4.4:-8108421 | MS.gene49700:CDS |
| TCGCAAACAATTTCAAACAC+AGG | 0.643858 | 4.4:+8108470 | None:intergenic |
| GAGTTCCTATCAGTTTCCCA+AGG | 0.655964 | 4.4:+8107096 | None:intergenic |
| TATTGATCAGCAACACAACA+CGG | 0.656491 | 4.4:-8107556 | MS.gene49700:CDS |
| AAATAAGGAAAATTCTCAAG+GGG | 0.659702 | 4.4:-8108075 | MS.gene49700:CDS |
| TCATCTGGTAGATGAATAAG+CGG | 0.661151 | 4.4:+8108851 | None:intergenic |
| ATAAGCGGACATGAATCAAG+AGG | 0.661579 | 4.4:+8108866 | None:intergenic |
| TCGATGGTTACTTGGCCCTG+CGG | 0.661597 | 4.4:+8107833 | None:intergenic |
| ATCAATACATCACAACCGCA+GGG | 0.666747 | 4.4:-8107848 | MS.gene49700:CDS |
| GTGTCGAATAATACCTCAGG+AGG | 0.669560 | 4.4:-8108534 | MS.gene49700:CDS |
| AATTAGGTACCTTGAAACTG+TGG | 0.670120 | 4.4:+8108820 | None:intergenic |
| AGATCTAGTACAATCGATGG+AGG | 0.682974 | 4.4:-8107666 | MS.gene49700:CDS |
| TAACACACTTGAGTGAACCA+TGG | 0.701801 | 4.4:+8108384 | None:intergenic |
| TGATCTGCAATGCAACACGA+TGG | 0.713676 | 4.4:-8107775 | MS.gene49700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGAAAAATTGTCAAT+AGG | + | chr4.4:8108856-8108875 | None:intergenic | 15.0% |
| !! | AAAATAAGGAAAATTCTCAA+GGG | - | chr4.4:8107639-8107658 | MS.gene49700:CDS | 20.0% |
| !! | TAGAAAACAAGATAATAATG+AGG | - | chr4.4:8107391-8107410 | MS.gene49700:CDS | 20.0% |
| !! | TTGTATTCAGATTGAAAATA+AGG | - | chr4.4:8107625-8107644 | MS.gene49700:CDS | 20.0% |
| !!! | TCTAATATGTTTTTTCTTCA+TGG | - | chr4.4:8107278-8107297 | MS.gene49700:CDS | 20.0% |
| !!! | TGTAAATTTTCAGAAAGATT+TGG | - | chr4.4:8107544-8107563 | MS.gene49700:CDS | 20.0% |
| ! | AAATAAGGAAAATTCTCAAG+GGG | - | chr4.4:8107640-8107659 | MS.gene49700:CDS | 25.0% |
| ! | ATTGGAACAAAAATATTGGA+AGG | - | chr4.4:8108520-8108539 | MS.gene49700:CDS | 25.0% |
| ! | GAAAATAAGGAAAATTCTCA+AGG | - | chr4.4:8107638-8107657 | MS.gene49700:CDS | 25.0% |
| ! | TATGAAAAATTGTCAATAGG+AGG | + | chr4.4:8108853-8108872 | None:intergenic | 25.0% |
| ! | TCTCATTGGAACAAAAATAT+TGG | - | chr4.4:8108516-8108535 | MS.gene49700:CDS | 25.0% |
| ! | TTGGAACAAAAATATTGGAA+GGG | - | chr4.4:8108521-8108540 | MS.gene49700:CDS | 25.0% |
| !! | AACCAACTTTTGTTCATATT+CGG | + | chr4.4:8108331-8108350 | None:intergenic | 25.0% |
| !!! | AGAAAGAATAAAGCCTTTTT+TGG | + | chr4.4:8108460-8108479 | None:intergenic | 25.0% |
| !!! | ATATGTTTTTTCTTCATGGA+AGG | - | chr4.4:8107282-8107301 | MS.gene49700:CDS | 25.0% |
| !!! | TATGTTTTTTCTTCATGGAA+GGG | - | chr4.4:8107283-8107302 | MS.gene49700:CDS | 25.0% |
| ACTAAGATTGAAAACTTCTC+TGG | + | chr4.4:8106922-8106941 | None:intergenic | 30.0% | |
| AGATTAGAGGTTCCTAATAT+GGG | - | chr4.4:8107485-8107504 | MS.gene49700:CDS | 30.0% | |
| AGTATGTTCAATGGAATTAG+AGG | - | chr4.4:8107667-8107686 | MS.gene49700:CDS | 30.0% | |
| ATAAACATTGCTGAACCATT+AGG | + | chr4.4:8108565-8108584 | None:intergenic | 30.0% | |
| CTAAGATTGAAAACTTCTCT+GGG | + | chr4.4:8106921-8106940 | None:intergenic | 30.0% | |
| TAAACAAGATTACCAAGTTC+AGG | + | chr4.4:8107131-8107150 | None:intergenic | 30.0% | |
| TAAACCATTGCTTGGTATTT+GGG | - | chr4.4:8107094-8107113 | MS.gene49700:CDS | 30.0% | |
| TAGATTAGAGGTTCCTAATA+TGG | - | chr4.4:8107484-8107503 | MS.gene49700:CDS | 30.0% | |
| TGGAACAAAAATATTGGAAG+GGG | - | chr4.4:8108522-8108541 | MS.gene49700:CDS | 30.0% | |
| TTAAACCATTGCTTGGTATT+TGG | - | chr4.4:8107093-8107112 | MS.gene49700:CDS | 30.0% | |
| TTCTCAAAACAAGCCAAAAA+AGG | - | chr4.4:8108444-8108463 | MS.gene49700:CDS | 30.0% | |
| ! | AATATTGAACATGCTTTTGC+GGG | - | chr4.4:8108652-8108671 | MS.gene49700:CDS | 30.0% |
| ! | AATATTGATAACACTGCCAT+CGG | + | chr4.4:8107999-8108018 | None:intergenic | 30.0% |
| ! | AATCTTGTTTATGTAATGCC+AGG | - | chr4.4:8107140-8107159 | MS.gene49700:CDS | 30.0% |
| ! | ATGAGGTAATGATTCCTTTT+AGG | - | chr4.4:8107408-8107427 | MS.gene49700:CDS | 30.0% |
| ! | GAATATTGAACATGCTTTTG+CGG | - | chr4.4:8108651-8108670 | MS.gene49700:CDS | 30.0% |
| ! | GCAAAATTATCATCTTTTCG+AGG | - | chr4.4:8108301-8108320 | MS.gene49700:CDS | 30.0% |
| ! | TTGCAATTTATTGTTGCTTG+AGG | - | chr4.4:8107361-8107380 | MS.gene49700:CDS | 30.0% |
| !! | AACTTTTGAAGAAAGGAAGA+AGG | - | chr4.4:8108815-8108834 | MS.gene49700:CDS | 30.0% |
| !! | AATGATTCCTTTTAGGAAGT+TGG | - | chr4.4:8107415-8107434 | MS.gene49700:CDS | 30.0% |
| !! | AATTATCATCTTTTCGAGGT+TGG | - | chr4.4:8108305-8108324 | MS.gene49700:CDS | 30.0% |
| !! | ATGATTCCTTTTAGGAAGTT+GGG | - | chr4.4:8107416-8107435 | MS.gene49700:CDS | 30.0% |
| !! | TTGCAAGAACTTTTGAAGAA+AGG | - | chr4.4:8108808-8108827 | MS.gene49700:CDS | 30.0% |
| !! | TTTTAGGAAGTTGGGTTTTA+GGG | - | chr4.4:8107424-8107443 | MS.gene49700:CDS | 30.0% |
| !! | TTTTGAGAAGGTTTTTCATG+AGG | + | chr4.4:8108433-8108452 | None:intergenic | 30.0% |
| !!! | TTTTTTGGCTTGTTTTGAGA+AGG | + | chr4.4:8108445-8108464 | None:intergenic | 30.0% |
| AAATATCCAGGAGCAAAATC+TGG | - | chr4.4:8108703-8108722 | MS.gene49700:CDS | 35.0% | |
| AAGGATCTAGTGCAATTGAT+GGG | - | chr4.4:8108125-8108144 | MS.gene49700:CDS | 35.0% | |
| AATTAGGTACCTTGAAACTG+TGG | + | chr4.4:8106898-8106917 | None:intergenic | 35.0% | |
| ACAGAATCATCTCTTGATCT+AGG | + | chr4.4:8107527-8107546 | None:intergenic | 35.0% | |
| ACATTTGAGCCATTTGAACA+AGG | + | chr4.4:8107595-8107614 | None:intergenic | 35.0% | |
| ACCAAAGGATAGAACAATCT+TGG | + | chr4.4:8107223-8107242 | None:intergenic | 35.0% | |
| ATGGCTCAAATGTATAAGCT+TGG | - | chr4.4:8107602-8107621 | MS.gene49700:CDS | 35.0% | |
| CTAAAACCCAACTTCCTAAA+AGG | + | chr4.4:8107425-8107444 | None:intergenic | 35.0% | |
| GAAATTGTTTGCGATTTCGA+TGG | - | chr4.4:8107254-8107273 | MS.gene49700:CDS | 35.0% | |
| GACATGAATCAAGAGGATAA+GGG | + | chr4.4:8106845-8106864 | None:intergenic | 35.0% | |
| GCTTGTAAACACATTTAAGC+AGG | + | chr4.4:8108887-8108906 | None:intergenic | 35.0% | |
| GCTTTGCATTCTTTATCTCA+TGG | + | chr4.4:8108225-8108244 | None:intergenic | 35.0% | |
| GGTTATGGTTTCAAATATCC+AGG | - | chr4.4:8108691-8108710 | MS.gene49700:CDS | 35.0% | |
| TAGGAACCTCTAATCTAACT+TGG | + | chr4.4:8107481-8107500 | None:intergenic | 35.0% | |
| TATTGATCAGCAACACAACA+CGG | - | chr4.4:8108159-8108178 | MS.gene49700:CDS | 35.0% | |
| TCATCTGGTAGATGAATAAG+CGG | + | chr4.4:8106867-8106886 | None:intergenic | 35.0% | |
| TCCAAGATTGTTCTATCCTT+TGG | - | chr4.4:8107219-8107238 | MS.gene49700:CDS | 35.0% | |
| TCCCTCTTTGTACTTCAAAA+TGG | - | chr4.4:8108727-8108746 | MS.gene49700:CDS | 35.0% | |
| TCGCAAACAATTTCAAACAC+AGG | + | chr4.4:8107248-8107267 | None:intergenic | 35.0% | |
| TCTAGATTCCTTCCAAACAA+AGG | + | chr4.4:8108761-8108780 | None:intergenic | 35.0% | |
| TCTCTTGATCTAGGAAACAA+TGG | + | chr4.4:8107518-8107537 | None:intergenic | 35.0% | |
| TTGAGTGTTAAACCATTGCT+TGG | - | chr4.4:8107086-8107105 | MS.gene49700:CDS | 35.0% | |
| TTGCAAGTTAAGTCTTTGCA+GGG | + | chr4.4:8108794-8108813 | None:intergenic | 35.0% | |
| ! | AATGGAATTAGAGGTTGATC+AGG | - | chr4.4:8107676-8107695 | MS.gene49700:CDS | 35.0% |
| ! | CTTTCTTTTGCTCTCGTATT+GGG | - | chr4.4:8108474-8108493 | MS.gene49700:CDS | 35.0% |
| ! | TCTTCTTTAGGAACTTGCAA+AGG | + | chr4.4:8108370-8108389 | None:intergenic | 35.0% |
| ! | TCTTTCTTTTGCTCTCGTAT+TGG | - | chr4.4:8108473-8108492 | MS.gene49700:CDS | 35.0% |
| ! | TGAAAACTTCTCTGGGAATT+AGG | + | chr4.4:8106914-8106933 | None:intergenic | 35.0% |
| ! | TTGCATCTTCTGAGAAAGTT+TGG | - | chr4.4:8106967-8106986 | MS.gene49700:CDS | 35.0% |
| !! | AAGAGCATTCCTTGTTCAAA+TGG | - | chr4.4:8107583-8107602 | MS.gene49700:CDS | 35.0% |
| !! | AGAGTCTTGGTGGTTATTTT+TGG | - | chr4.4:8107780-8107799 | MS.gene49700:CDS | 35.0% |
| !! | CTTTTAGGAAGTTGGGTTTT+AGG | - | chr4.4:8107423-8107442 | MS.gene49700:CDS | 35.0% |
| !! | GGTGGCTTTAAACATATCTT+TGG | - | chr4.4:8107803-8107822 | MS.gene49700:CDS | 35.0% |
| !!! | AGTCTTGGTGGTTATTTTTG+GGG | - | chr4.4:8107782-8107801 | MS.gene49700:CDS | 35.0% |
| !!! | GAAAGATTTGGTGCTTTTGA+AGG | - | chr4.4:8107556-8107575 | MS.gene49700:CDS | 35.0% |
| !!! | GAGTCTTGGTGGTTATTTTT+GGG | - | chr4.4:8107781-8107800 | MS.gene49700:CDS | 35.0% |
| !!! | GCCATTTTGAAGTACAAAGA+GGG | + | chr4.4:8108731-8108750 | None:intergenic | 35.0% |
| AAAGAAGACCAAGTGTATGC+TGG | - | chr4.4:8108382-8108401 | MS.gene49700:CDS | 40.0% | |
| AAGGGACAACAACTTCTCAT+TGG | - | chr4.4:8108502-8108521 | MS.gene49700:CDS | 40.0% | |
| AATATTGACAGCACTGCCAT+CGG | + | chr4.4:8107921-8107940 | None:intergenic | 40.0% | |
| AATGGTCCAGTTCCCATATT+AGG | + | chr4.4:8107500-8107519 | None:intergenic | 40.0% | |
| ACAAGAGACGATCAAAGATC+TGG | - | chr4.4:8107968-8107987 | MS.gene49700:CDS | 40.0% | |
| AGATCTAGTACAATCGATGG+AGG | - | chr4.4:8108049-8108068 | MS.gene49700:CDS | 40.0% | |
| ATAAGCGGACATGAATCAAG+AGG | + | chr4.4:8106852-8106871 | None:intergenic | 40.0% | |
| ATCAAGAGAAAGAGTCTTGG+TGG | - | chr4.4:8107770-8107789 | MS.gene49700:CDS | 40.0% | |
| ATCAATACATCACAACCGCA+GGG | - | chr4.4:8107867-8107886 | MS.gene49700:CDS | 40.0% | |
| ATGTGTTTGCCACAGTTTCA+AGG | - | chr4.4:8106886-8106905 | MS.gene49700:CDS | 40.0% | |
| CAAGGATCTAGTGCAATTGA+TGG | - | chr4.4:8108124-8108143 | MS.gene49700:CDS | 40.0% | |
| CACTAGCCAAGTTAGATTAG+AGG | - | chr4.4:8107472-8107491 | MS.gene49700:CDS | 40.0% | |
| CAGCATCACAAAATGATTGC+TGG | - | chr4.4:8108088-8108107 | MS.gene49700:CDS | 40.0% | |
| CGAAGATCTAGTACAATCGA+TGG | - | chr4.4:8108046-8108065 | MS.gene49700:CDS | 40.0% | |
| CGATTGTACTAGATCTTCGA+TGG | + | chr4.4:8108045-8108064 | None:intergenic | 40.0% | |
| CTAGATCTTCGATGGTTACT+TGG | + | chr4.4:8107893-8107912 | None:intergenic | 40.0% | |
| CTATCAGTTTCCCAAGGAAA+CGG | + | chr4.4:8108616-8108635 | None:intergenic | 40.0% | |
| CTCTAATCTAACTTGGCTAG+TGG | + | chr4.4:8107474-8107493 | None:intergenic | 40.0% | |
| CTTGCAAGTTAAGTCTTTGC+AGG | + | chr4.4:8108795-8108814 | None:intergenic | 40.0% | |
| GAACTGGAGAGAATGACATA+GGG | - | chr4.4:8108188-8108207 | MS.gene49700:CDS | 40.0% | |
| GAATCAAGAGGATAAGGGTA+GGG | + | chr4.4:8106840-8106859 | None:intergenic | 40.0% | |
| GCTACAACAGAAACAAAACC+TGG | + | chr4.4:8107161-8107180 | None:intergenic | 40.0% | |
| GCTGGAACAATAGATGATCA+AGG | - | chr4.4:8108106-8108125 | MS.gene49700:CDS | 40.0% | |
| GGACATGAATCAAGAGGATA+AGG | + | chr4.4:8106846-8106865 | None:intergenic | 40.0% | |
| GGCCGAATATGAACAAAAGT+TGG | - | chr4.4:8108326-8108345 | MS.gene49700:CDS | 40.0% | |
| GGGATAGATTGTGTTTACCA+TGG | - | chr4.4:8107314-8107333 | MS.gene49700:CDS | 40.0% | |
| GTTCAACAGAATCCTGAACT+TGG | - | chr4.4:8107116-8107135 | MS.gene49700:CDS | 40.0% | |
| TAACACACTTGAGTGAACCA+TGG | + | chr4.4:8107334-8107353 | None:intergenic | 40.0% | |
| TCACTATCCTTATTGCTTGG+AGG | + | chr4.4:8107740-8107759 | None:intergenic | 40.0% | |
| TGAACCCAAATACCAAGCAA+TGG | + | chr4.4:8107101-8107120 | None:intergenic | 40.0% | |
| TGAATCAAGAGGATAAGGGT+AGG | + | chr4.4:8106841-8106860 | None:intergenic | 40.0% | |
| TGCATCAAGAGAAAGAGTCT+TGG | - | chr4.4:8107767-8107786 | MS.gene49700:CDS | 40.0% | |
| TTCTTCTGATCCGTTTCCTT+GGG | - | chr4.4:8108603-8108622 | MS.gene49700:CDS | 40.0% | |
| TTTCAAACACAGGTGACCAA+AGG | + | chr4.4:8107238-8107257 | None:intergenic | 40.0% | |
| ! | AGGGGAAGAAGTATGTTCAA+TGG | - | chr4.4:8107658-8107677 | MS.gene49700:CDS | 40.0% |
| ! | CTCTTTTCCTCCAAGCAATA+AGG | - | chr4.4:8107730-8107749 | MS.gene49700:CDS | 40.0% |
| ! | GCATACACTTGGTCTTCTTT+AGG | + | chr4.4:8108382-8108401 | None:intergenic | 40.0% |
| ! | GTGTCACTATCCTTATTGCT+TGG | + | chr4.4:8107743-8107762 | None:intergenic | 40.0% |
| !! | ACCAAGTGTATGCTGGTTTA+TGG | - | chr4.4:8108389-8108408 | MS.gene49700:CDS | 40.0% |
| !! | CAAGTGTATGCTGGTTTATG+GGG | - | chr4.4:8108391-8108410 | MS.gene49700:CDS | 40.0% |
| !! | CCAAGTGTATGCTGGTTTAT+GGG | - | chr4.4:8108390-8108409 | MS.gene49700:CDS | 40.0% |
| !! | GAAGGTATTGCAAGTGGTTA+TGG | - | chr4.4:8108676-8108695 | MS.gene49700:CDS | 40.0% |
| !!! | CGCCATTTTGAAGTACAAAG+AGG | + | chr4.4:8108732-8108751 | None:intergenic | 40.0% |
| ACTGTGGCAAACACATCATC+TGG | + | chr4.4:8106882-8106901 | None:intergenic | 45.0% | |
| AGCGTGTCGAATAATACCTC+AGG | - | chr4.4:8107178-8107197 | MS.gene49700:CDS | 45.0% | |
| ATGGCGATCTTGCCTTTGTT+TGG | - | chr4.4:8108746-8108765 | MS.gene49700:CDS | 45.0% | |
| CAAAGATCTGGTACAACCGA+TGG | - | chr4.4:8107980-8107999 | MS.gene49700:CDS | 45.0% | |
| CAAGGAAACGGATCAGAAGA+AGG | + | chr4.4:8108604-8108623 | None:intergenic | 45.0% | |
| CACACTTTCTCCACTCAACA+AGG | + | chr4.4:8107034-8107053 | None:intergenic | 45.0% | |
| CACTCAAAGACCTTGTTGAG+TGG | - | chr4.4:8107021-8107040 | MS.gene49700:CDS | 45.0% | |
| CATCAATACATCACAACCGC+AGG | - | chr4.4:8107866-8107885 | MS.gene49700:CDS | 45.0% | |
| CCCATAAACCAGCATACACT+TGG | + | chr4.4:8108393-8108412 | None:intergenic | 45.0% | |
| CGCTATGCATTGCATCCTAA+TGG | - | chr4.4:8108547-8108566 | MS.gene49700:CDS | 45.0% | |
| CGTTTCCTTGGGAAACTGAT+AGG | - | chr4.4:8108614-8108633 | MS.gene49700:CDS | 45.0% | |
| CTCAGGAGGTTGTCTCTTTA+GGG | - | chr4.4:8107195-8107214 | MS.gene49700:CDS | 45.0% | |
| CTTCATGGAAGGGAAGAAGA+GGG | - | chr4.4:8107293-8107312 | MS.gene49700:CDS | 45.0% | |
| CTTCTTCTGATCCGTTTCCT+TGG | - | chr4.4:8108602-8108621 | MS.gene49700:CDS | 45.0% | |
| GAGGTTCCTAATATGGGAAC+TGG | - | chr4.4:8107491-8107510 | MS.gene49700:CDS | 45.0% | |
| GAGTTCCTATCAGTTTCCCA+AGG | + | chr4.4:8108622-8108641 | None:intergenic | 45.0% | |
| GGAACTGGAGAGAATGACAT+AGG | - | chr4.4:8108187-8108206 | MS.gene49700:CDS | 45.0% | |
| GTGTCGAATAATACCTCAGG+AGG | - | chr4.4:8107181-8107200 | MS.gene49700:CDS | 45.0% | |
| TCTTCATGGAAGGGAAGAAG+AGG | - | chr4.4:8107292-8107311 | MS.gene49700:CDS | 45.0% | |
| TGATCTGCAATGCAACACGA+TGG | - | chr4.4:8107940-8107959 | MS.gene49700:CDS | 45.0% | |
| TTCATGGAAGGGAAGAAGAG+GGG | - | chr4.4:8107294-8107313 | MS.gene49700:CDS | 45.0% | |
| TTGTCAATAGGAGGCAGAGA+AGG | + | chr4.4:8108844-8108863 | None:intergenic | 45.0% | |
| ! | CGATCTTGCCTTTGTTTGGA+AGG | - | chr4.4:8108750-8108769 | MS.gene49700:CDS | 45.0% |
| !!! | CTTGGTGGTTATTTTTGGGG+TGG | - | chr4.4:8107785-8107804 | MS.gene49700:CDS | 45.0% |
| !!! | GGAAGTTGGGTTTTAGGGAT+AGG | - | chr4.4:8107429-8107448 | MS.gene49700:CDS | 45.0% |
| CCTAAAGAGACAACCTCCTG+AGG | + | chr4.4:8107197-8107216 | None:intergenic | 50.0% | |
| CCTCAGGAGGTTGTCTCTTT+AGG | - | chr4.4:8107194-8107213 | MS.gene49700:CDS | 50.0% | |
| CGGTCGAACTAGATCTTCGA+TGG | + | chr4.4:8107901-8107920 | None:intergenic | 50.0% | |
| CTCTCGTATTGGGAGTCGAA+GGG | - | chr4.4:8108484-8108503 | MS.gene49700:CDS | 50.0% | |
| GTCATTCTCTCCAGTTCCTG+CGG | + | chr4.4:8108185-8108204 | None:intergenic | 50.0% | |
| TGCAATGCAACACGATGGCA+GGG | - | chr4.4:8107945-8107964 | MS.gene49700:CDS | 50.0% | |
| ! | AGGGAACCAGATTTTGCTCC+TGG | + | chr4.4:8108712-8108731 | None:intergenic | 50.0% |
| ! | CGAAGATCTAGTTCGACCGA+TGG | - | chr4.4:8107902-8107921 | MS.gene49700:CDS | 50.0% |
| ! | GAACATGCTTTTGCGGGAGA+AGG | - | chr4.4:8108658-8108677 | MS.gene49700:CDS | 50.0% |
| ! | GGTTTATGGGGCGGTACTTT+TGG | - | chr4.4:8108403-8108422 | MS.gene49700:CDS | 50.0% |
| ! | TATGGGGCGGTACTTTTGGA+TGG | - | chr4.4:8108407-8108426 | MS.gene49700:CDS | 50.0% |
| !! | GTGTATGCTGGTTTATGGGG+CGG | - | chr4.4:8108394-8108413 | MS.gene49700:CDS | 50.0% |
| CTGCAATGCAACACGATGGC+AGG | - | chr4.4:8107944-8107963 | MS.gene49700:CDS | 55.0% | |
| GCTCTCGTATTGGGAGTCGA+AGG | - | chr4.4:8108483-8108502 | MS.gene49700:CDS | 55.0% | |
| TCGATGGTTACTTGGCCCTG+CGG | + | chr4.4:8107885-8107904 | None:intergenic | 55.0% | |
| !! | GCGGGAGAAGGTATTGCAAG+TGG | - | chr4.4:8108670-8108689 | MS.gene49700:CDS | 55.0% |
| CACAACACGGCCGCAGGAAC+TGG | - | chr4.4:8108172-8108191 | MS.gene49700:CDS | 65.0% | |
| CAGCAACACAACACGGCCGC+AGG | - | chr4.4:8108166-8108185 | MS.gene49700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8106828 | 8108909 | 8106828 | ID=MS.gene49700 |
| chr4.4 | mRNA | 8106828 | 8108909 | 8106828 | ID=MS.gene49700.t1;Parent=MS.gene49700 |
| chr4.4 | exon | 8106828 | 8108909 | 8106828 | ID=MS.gene49700.t1.exon1;Parent=MS.gene49700.t1 |
| chr4.4 | CDS | 8106828 | 8108909 | 8106828 | ID=cds.MS.gene49700.t1;Parent=MS.gene49700.t1 |
| Gene Sequence |
| Protein sequence |
