Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030591.t1 | RHN43144.1 | 82.2 | 697 | 92 | 5 | 1 | 670 | 1 | 692 | 1.30E-278 | 968.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030591.t1 | Q8RWD6 | 39.6 | 679 | 261 | 13 | 14 | 668 | 19 | 572 | 3.0e-130 | 467.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030591.t1 | A0A396GUI7 | 82.2 | 697 | 92 | 5 | 1 | 670 | 1 | 692 | 9.5e-279 | 968.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030587 | MS.gene030591 | PPI |
| MS.gene030591 | MS.gene70191 | PPI |
| MS.gene030591 | MS.gene49697 | PPI |
| MS.gene030591 | MS.gene013291 | PPI |
| MS.gene049252 | MS.gene030591 | PPI |
| MS.gene49700 | MS.gene030591 | PPI |
| MS.gene030591 | MS.gene40916 | PPI |
| MS.gene70188 | MS.gene030591 | PPI |
| MS.gene030591 | MS.gene06374 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030591.t1 | MTR_8g094190 | 77.943 | 671 | 105 | 6 | 1 | 670 | 1 | 629 | 0.0 | 1052 |
| MS.gene030591.t1 | MTR_8g094150 | 79.675 | 615 | 66 | 6 | 60 | 670 | 7 | 566 | 0.0 | 935 |
| MS.gene030591.t1 | MTR_3g096670 | 52.941 | 374 | 122 | 8 | 10 | 343 | 3 | 362 | 5.96e-116 | 360 |
| MS.gene030591.t1 | MTR_3g096670 | 62.105 | 285 | 84 | 4 | 394 | 669 | 331 | 600 | 1.89e-114 | 357 |
| MS.gene030591.t1 | MTR_3g096670 | 52.941 | 374 | 122 | 8 | 10 | 343 | 3 | 362 | 1.19e-115 | 360 |
| MS.gene030591.t1 | MTR_3g096670 | 62.105 | 285 | 84 | 4 | 394 | 669 | 331 | 600 | 2.90e-114 | 357 |
| MS.gene030591.t1 | MTR_0095s0110 | 85.083 | 181 | 27 | 0 | 490 | 670 | 1 | 181 | 1.70e-107 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030591.t1 | AT5G39450 | 42.363 | 347 | 149 | 10 | 14 | 337 | 19 | 337 | 3.80e-77 | 258 |
| MS.gene030591.t1 | AT5G39450 | 53.070 | 228 | 101 | 2 | 444 | 669 | 350 | 573 | 9.89e-77 | 256 |
| MS.gene030591.t1 | AT5G39490 | 46.278 | 309 | 129 | 8 | 14 | 304 | 11 | 300 | 1.60e-74 | 250 |
| MS.gene030591.t1 | AT5G39490 | 46.552 | 232 | 118 | 2 | 441 | 670 | 330 | 557 | 4.92e-65 | 225 |
| MS.gene030591.t1 | AT5G39460 | 43.605 | 344 | 147 | 10 | 14 | 337 | 12 | 328 | 3.06e-73 | 247 |
| MS.gene030591.t1 | AT5G39460 | 50.000 | 230 | 102 | 5 | 444 | 669 | 341 | 561 | 1.63e-65 | 226 |
| MS.gene030591.t1 | AT5G39480 | 50.000 | 262 | 106 | 6 | 14 | 262 | 12 | 261 | 5.42e-73 | 246 |
| MS.gene030591.t1 | AT5G39480 | 47.638 | 254 | 117 | 4 | 428 | 669 | 309 | 558 | 4.19e-68 | 233 |
| MS.gene030591.t1 | AT5G39470 | 37.363 | 91 | 32 | 1 | 14 | 104 | 96 | 161 | 2.24e-13 | 69.3 |
Find 123 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAGGAGGTTGTTTCTTT+AGG | 0.164715 | 4.2:-8735564 | MS.gene030591:CDS |
| TTAAACCATTGCTTGGTATT+TGG | 0.167263 | 4.2:-8735665 | MS.gene030591:CDS |
| CATTTGCATAATTAGGATTT+AGG | 0.187285 | 4.2:+8735259 | None:intergenic |
| ATCAAGTGTATGCTGGTTTA+TGG | 0.206878 | 4.2:-8734438 | MS.gene030591:CDS |
| CTCAGGAGGTTGTTTCTTTA+GGG | 0.209032 | 4.2:-8735563 | MS.gene030591:CDS |
| AATGGTTCATTTGCATAATT+AGG | 0.214034 | 4.2:+8735252 | None:intergenic |
| TGAAAACTTCTCTGGGAATT+AGG | 0.230889 | 4.2:+8735847 | None:intergenic |
| GGTTTATGGGGCGGTACTTT+TGG | 0.253329 | 4.2:-8734424 | MS.gene030591:CDS |
| TAAACCATTGCTTGGTATTT+GGG | 0.255038 | 4.2:-8735664 | MS.gene030591:CDS |
| CAGCTATTGTGTTGCGTTGC+TGG | 0.268648 | 4.2:+8734806 | None:intergenic |
| CTAAAACCCAACTTGCTAAA+AGG | 0.268952 | 4.2:+8735339 | None:intergenic |
| GTACTAACCAAGTTAGATTA+AGG | 0.276509 | 4.2:-8735284 | MS.gene030591:CDS |
| CATTTCCTTGGAACACTGAT+AGG | 0.279609 | 4.2:-8734213 | MS.gene030591:CDS |
| TCCCTCTTTGTGTTTCAAAA+TGG | 0.295164 | 4.2:-8734100 | MS.gene030591:CDS |
| GCATACACTTGATCTTCTTT+AGG | 0.298816 | 4.2:+8734448 | None:intergenic |
| TTGCATCTTCTGAGAAAGTT+TGG | 0.305192 | 4.2:-8735791 | MS.gene030591:CDS |
| TTCTCAAAACAAGCCTAAAA+AGG | 0.314794 | 4.2:-8734383 | MS.gene030591:CDS |
| TCCAAGATTGTTCTATCCTT+TGG | 0.318701 | 4.2:-8735539 | MS.gene030591:CDS |
| CTTGCAAGTTAAGTCTTTGC+AGG | 0.324795 | 4.2:+8734035 | None:intergenic |
| ACTAAGATTGAAAACTTCTC+TGG | 0.349744 | 4.2:+8735839 | None:intergenic |
| CGAAGATCTAGTACAATTGA+TGG | 0.375639 | 4.2:-8734847 | MS.gene030591:CDS |
| TAAACAAGATTACCAAGTTC+AGG | 0.378819 | 4.2:+8735630 | None:intergenic |
| TCAAGTGTATGCTGGTTTAT+GGG | 0.380553 | 4.2:-8734437 | MS.gene030591:CDS |
| TGTCAATATTGGTAAGAAAC+GGG | 0.408489 | 4.2:-8734740 | MS.gene030591:CDS |
| AACCATTCTTTCCTAGATCA+AGG | 0.416781 | 4.2:-8735236 | MS.gene030591:CDS |
| ACCAAAGGATAGAACAATCT+TGG | 0.422539 | 4.2:+8735538 | None:intergenic |
| AAATATCCAGGATCAAAATC+TGG | 0.428229 | 4.2:-8734124 | MS.gene030591:CDS |
| ATAAACATTGGCGAACCATT+AGG | 0.435208 | 4.2:+8734265 | None:intergenic |
| CTATCAGTGTTCCAAGGAAA+TGG | 0.436146 | 4.2:+8734214 | None:intergenic |
| ACATAGTCATCCCTTGATCT+AGG | 0.436786 | 4.2:+8735225 | None:intergenic |
| CGCTACGCCTTGCATCCTAA+TGG | 0.437385 | 4.2:-8734280 | MS.gene030591:CDS |
| GGACTTGAATCAAGAGGATA+AGG | 0.438645 | 4.2:+8735915 | None:intergenic |
| CTTACTATTGCTCTCTTACT+CGG | 0.439508 | 4.2:-8734353 | MS.gene030591:CDS |
| ATGTGTTTGCCACAGTTTCA+AGG | 0.439794 | 4.2:-8735872 | MS.gene030591:CDS |
| GATGGCAGTGTTGTCAATAT+TGG | 0.444794 | 4.2:-8734751 | MS.gene030591:CDS |
| ATGGTGTTATTGCCTTTGTT+TGG | 0.445858 | 4.2:-8734081 | MS.gene030591:CDS |
| GAAGGTATTGCAGGTGGCTA+TGG | 0.446172 | 4.2:-8734151 | MS.gene030591:CDS |
| TCTCATTGGAACAAAAGTAT+TGG | 0.449339 | 4.2:-8734311 | MS.gene030591:CDS |
| CTTCATCTGAACCATTTCCT+TGG | 0.454452 | 4.2:-8734225 | MS.gene030591:CDS |
| TTTGTGGGAGAAGGTATTGC+AGG | 0.455387 | 4.2:-8734160 | MS.gene030591:CDS |
| TTGTCAATATTGGTAAGAAA+CGG | 0.455965 | 4.2:-8734741 | MS.gene030591:CDS |
| CAACACAGCCGCTGGAGCAA+GGG | 0.457792 | 4.2:-8734875 | MS.gene030591:CDS |
| GTCCCTAGTTCCTGCGGTTG+TGG | 0.462275 | 4.2:+8734651 | None:intergenic |
| GGGGTAGATTGTGTTTATCA+TGG | 0.463874 | 4.2:-8735444 | MS.gene030591:CDS |
| AATCTTGTTTATGTAATGCC+AGG | 0.464568 | 4.2:-8735618 | MS.gene030591:CDS |
| TGTTGCTTGAGGTTGAATCT+AGG | 0.464870 | 4.2:-8735386 | MS.gene030591:CDS |
| TTAGGAACCTTAATCTAACT+TGG | 0.467552 | 4.2:+8735277 | None:intergenic |
| GCTTGTAAACACATTTAAGT+AGG | 0.471199 | 4.2:+8733943 | None:intergenic |
| CAAGGAAATGGTTCAGATGA+AGG | 0.471399 | 4.2:+8734226 | None:intergenic |
| GTGTGACTATCCTTATTGAT+TGG | 0.471986 | 4.2:+8735009 | None:intergenic |
| ACACCACAACCGCAGGAACT+AGG | 0.477831 | 4.2:-8734654 | MS.gene030591:CDS |
| CAGCAACGCAACACAATAGC+TGG | 0.480588 | 4.2:-8734805 | MS.gene030591:CDS |
| GGCTATGGATTCAAATATCC+AGG | 0.481720 | 4.2:-8734136 | MS.gene030591:CDS |
| ACTGTGGCAAACACATCATC+TGG | 0.489039 | 4.2:+8735879 | None:intergenic |
| GATTTGCATTCTTTATCTCA+TGG | 0.489665 | 4.2:+8734605 | None:intergenic |
| AGGGGAAGAAGTTGGCTCAA+TGG | 0.493139 | 4.2:-8735091 | MS.gene030591:CDS |
| AAGGGACAACAACTTCTCAT+TGG | 0.494162 | 4.2:-8734325 | MS.gene030591:CDS |
| TTGAGTGTTAAACCATTGCT+TGG | 0.500161 | 4.2:-8735672 | MS.gene030591:CDS |
| TCCCTTGATCTAGGAAAGAA+TGG | 0.503136 | 4.2:+8735234 | None:intergenic |
| GCTCTCTTACTCGGAGTCAA+AGG | 0.508292 | 4.2:-8734344 | MS.gene030591:CDS |
| TTGTCAATGGGAGGCAGAGA+AGG | 0.513421 | 4.2:+8733986 | None:intergenic |
| GTGTTCGATATTCATCGATA+AGG | 0.516949 | 4.2:+8734186 | None:intergenic |
| TTGCAATTTATTGTTGCTTG+AGG | 0.520647 | 4.2:-8735397 | MS.gene030591:CDS |
| CTAAGATTGAAAACTTCTCT+GGG | 0.523415 | 4.2:+8735840 | None:intergenic |
| CTCTCTTACTCGGAGTCAAA+GGG | 0.526823 | 4.2:-8734343 | MS.gene030591:CDS |
| GTTCAACAGAATCCTGAACT+TGG | 0.526928 | 4.2:-8735642 | MS.gene030591:CDS |
| ATTTCCTTGGAACACTGATA+GGG | 0.532867 | 4.2:-8734212 | MS.gene030591:CDS |
| GAAATTGTTTGCGATTTCGA+TGG | 0.532974 | 4.2:-8735504 | MS.gene030591:CDS |
| GAAAATAAAGAAAATTCTCA+AGG | 0.533455 | 4.2:-8735111 | MS.gene030591:CDS |
| CTTCATGGAAGGGAAGAAGA+GGG | 0.535516 | 4.2:-8735465 | MS.gene030591:CDS |
| ACAACACAGCCGCTGGAGCA+AGG | 0.536255 | 4.2:-8734876 | MS.gene030591:CDS |
| ATGGCTTGAACTAATCCCTA+TGG | 0.536846 | 4.2:+8734624 | None:intergenic |
| CACTCAAAGACCTTGTTGAG+TGG | 0.537136 | 4.2:-8735737 | MS.gene030591:CDS |
| CATCAACACAACACAGCCGC+TGG | 0.541070 | 4.2:-8734883 | MS.gene030591:CDS |
| AATTCTCAAGGGGAAGAAGT+TGG | 0.541165 | 4.2:-8735099 | MS.gene030591:CDS |
| AACACAGCCGCTGGAGCAAG+GGG | 0.552236 | 4.2:-8734874 | MS.gene030591:CDS |
| TGTTATTGCCTTTGTTTGGA+AGG | 0.552749 | 4.2:-8734077 | MS.gene030591:CDS |
| CACCACAACCGCAGGAACTA+GGG | 0.552998 | 4.2:-8734653 | MS.gene030591:CDS |
| TTGATATTCACTATAAACAT+TGG | 0.553523 | 4.2:+8734253 | None:intergenic |
| GGAACTAGGGACAATGCCAT+AGG | 0.554489 | 4.2:-8734640 | MS.gene030591:CDS |
| AAAGAAGATCAAGTGTATGC+TGG | 0.555008 | 4.2:-8734445 | MS.gene030591:CDS |
| TCTTGATTCCTTCCAAACAA+AGG | 0.557133 | 4.2:+8734069 | None:intergenic |
| AATATTGACAACACTGCCAT+CGG | 0.558425 | 4.2:+8734753 | None:intergenic |
| CACACTCTCTCCACTCAACA+AGG | 0.560982 | 4.2:+8735727 | None:intergenic |
| TGACTATCCTTATTGATTGG+AGG | 0.569707 | 4.2:+8735012 | None:intergenic |
| TGAATCAAGAGGATAAGGGT+AGG | 0.569984 | 4.2:+8735920 | None:intergenic |
| CAAGTGTATGCTGGTTTATG+GGG | 0.571442 | 4.2:-8734436 | MS.gene030591:CDS |
| ACCATTCTTTCCTAGATCAA+GGG | 0.573435 | 4.2:-8735235 | MS.gene030591:CDS |
| AGCGTGTCGAATAATACCTC+AGG | 0.579720 | 4.2:-8735580 | MS.gene030591:CDS |
| AAAATAAAGAAAATTCTCAA+GGG | 0.581227 | 4.2:-8735110 | MS.gene030591:CDS |
| TCTTCATGGAAGGGAAGAAG+AGG | 0.584944 | 4.2:-8735466 | MS.gene030591:CDS |
| TTGCAAGTTAAGTCTTTGCA+GGG | 0.588072 | 4.2:+8734036 | None:intergenic |
| GGCATTGTCCCTAGTTCCTG+CGG | 0.588627 | 4.2:+8734645 | None:intergenic |
| GAATCAAGAGGATAAGGGTA+GGG | 0.590042 | 4.2:+8735921 | None:intergenic |
| TCTTCTTTAGGAACTTGCAA+AGG | 0.590093 | 4.2:+8734460 | None:intergenic |
| TCGATGGCCCCTTGCTCCAG+CGG | 0.591032 | 4.2:+8734867 | None:intergenic |
| CAGCAACACACCACAACCGC+AGG | 0.591593 | 4.2:-8734661 | MS.gene030591:CDS |
| ATTGGAACAAAAGTATTGGA+AGG | 0.593692 | 4.2:-8734307 | MS.gene030591:CDS |
| TGGCGAACCATTAGGATGCA+AGG | 0.595930 | 4.2:+8734273 | None:intergenic |
| GTGGGAGAAGGTATTGCAGG+TGG | 0.596666 | 4.2:-8734157 | MS.gene030591:CDS |
| CAATTGAACTAGATCTTCCA+AGG | 0.604899 | 4.2:+8734929 | None:intergenic |
| CAATTGTACTAGATCTTCGA+TGG | 0.606447 | 4.2:+8734851 | None:intergenic |
| TCATGGAAGGGAAGAAGAGG+GGG | 0.607393 | 4.2:-8735463 | MS.gene030591:CDS |
| GACTTGAATCAAGAGGATAA+GGG | 0.608865 | 4.2:+8735916 | None:intergenic |
| GAACTAGGGACAATGCCATA+GGG | 0.609628 | 4.2:-8734639 | MS.gene030591:CDS |
| GCTACAACAGAAACAAAACC+TGG | 0.618777 | 4.2:+8735600 | None:intergenic |
| TTCATGGAAGGGAAGAAGAG+GGG | 0.619678 | 4.2:-8735464 | MS.gene030591:CDS |
| TGAACCCAAATACCAAGCAA+TGG | 0.622950 | 4.2:+8735660 | None:intergenic |
| CCTAAAGAAACAACCTCCTG+AGG | 0.625560 | 4.2:+8735564 | None:intergenic |
| TTTCAAACACAGGTGACCAA+AGG | 0.627505 | 4.2:+8735523 | None:intergenic |
| GTGTATGCTGGTTTATGGGG+CGG | 0.628467 | 4.2:-8734433 | MS.gene030591:CDS |
| ATCTAGGAAGCAAGATAGTG+AGG | 0.629097 | 4.2:-8735370 | MS.gene030591:CDS |
| CGATTGTACTAGATCTTCGA+TGG | 0.634797 | 4.2:+8734707 | None:intergenic |
| CAAAGATCTAGTACAGCCGA+TGG | 0.640877 | 4.2:-8734769 | MS.gene030591:CDS |
| TCGCAAACAATTTCAAACAC+AGG | 0.643858 | 4.2:+8735513 | None:intergenic |
| GTCAATATTGGTAAGAAACG+GGG | 0.644701 | 4.2:-8734739 | MS.gene030591:CDS |
| GAGTCCCTATCAGTGTTCCA+AGG | 0.646047 | 4.2:+8734208 | None:intergenic |
| TCATCTGGTAGATGAATAAG+CGG | 0.658669 | 4.2:+8735894 | None:intergenic |
| AAATAAAGAAAATTCTCAAG+GGG | 0.659702 | 4.2:-8735109 | MS.gene030591:CDS |
| ATAAGCGGACTTGAATCAAG+AGG | 0.663015 | 4.2:+8735909 | None:intergenic |
| GTGTCGAATAATACCTCAGG+AGG | 0.669560 | 4.2:-8735577 | MS.gene030591:CDS |
| AATTAGGTACCTTGAAACTG+TGG | 0.670120 | 4.2:+8735863 | None:intergenic |
| AATGGATTTAGAGATAGATG+AGG | 0.691570 | 4.2:-8735073 | MS.gene030591:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAGAAAATTCTCAA+GGG | - | chr4.2:8734760-8734779 | MS.gene030591:CDS | 15.0% |
| !! | AAATATGAAAAATTGTCAAT+GGG | + | chr4.2:8735899-8735918 | None:intergenic | 15.0% |
| !! | AAATAAAGAAAATTCTCAAG+GGG | - | chr4.2:8734761-8734780 | MS.gene030591:CDS | 20.0% |
| !! | CAAATATGAAAAATTGTCAA+TGG | + | chr4.2:8735900-8735919 | None:intergenic | 20.0% |
| !! | GAAAATAAAGAAAATTCTCA+AGG | - | chr4.2:8734759-8734778 | MS.gene030591:CDS | 20.0% |
| !! | TTGATATTCACTATAAACAT+TGG | + | chr4.2:8735620-8735639 | None:intergenic | 20.0% |
| !!! | AACCAATTTTTGTTCATATT+CGG | + | chr4.2:8735374-8735393 | None:intergenic | 20.0% |
| !!! | TCTAATATGTTTTTTCTTCA+TGG | - | chr4.2:8734390-8734409 | MS.gene030591:CDS | 20.0% |
| !!! | TGTTAATTTTCAGAAAGATT+TGG | - | chr4.2:8734665-8734684 | MS.gene030591:CDS | 20.0% |
| ! | AATGGTTCATTTGCATAATT+AGG | + | chr4.2:8734621-8734640 | None:intergenic | 25.0% |
| ! | CATTTGCATAATTAGGATTT+AGG | + | chr4.2:8734614-8734633 | None:intergenic | 25.0% |
| ! | TTGTCAATATTGGTAAGAAA+CGG | - | chr4.2:8735129-8735148 | MS.gene030591:CDS | 25.0% |
| !!! | ATATGTTTTTTCTTCATGGA+AGG | - | chr4.2:8734394-8734413 | MS.gene030591:CDS | 25.0% |
| !!! | TATGTTTTTTCTTCATGGAA+GGG | - | chr4.2:8734395-8734414 | MS.gene030591:CDS | 25.0% |
| AAATATCCAGGATCAAAATC+TGG | - | chr4.2:8735746-8735765 | MS.gene030591:CDS | 30.0% | |
| ACTAAGATTGAAAACTTCTC+TGG | + | chr4.2:8734034-8734053 | None:intergenic | 30.0% | |
| CTAAGATTGAAAACTTCTCT+GGG | + | chr4.2:8734033-8734052 | None:intergenic | 30.0% | |
| GATTTGCATTCTTTATCTCA+TGG | + | chr4.2:8735268-8735287 | None:intergenic | 30.0% | |
| GCTTGTAAACACATTTAAGT+AGG | + | chr4.2:8735930-8735949 | None:intergenic | 30.0% | |
| GTACTAACCAAGTTAGATTA+AGG | - | chr4.2:8734586-8734605 | MS.gene030591:CDS | 30.0% | |
| TAAACAAGATTACCAAGTTC+AGG | + | chr4.2:8734243-8734262 | None:intergenic | 30.0% | |
| TAAACCATTGCTTGGTATTT+GGG | - | chr4.2:8734206-8734225 | MS.gene030591:CDS | 30.0% | |
| TATGAAAAATTGTCAATGGG+AGG | + | chr4.2:8735896-8735915 | None:intergenic | 30.0% | |
| TGTCAATATTGGTAAGAAAC+GGG | - | chr4.2:8735130-8735149 | MS.gene030591:CDS | 30.0% | |
| TTAAACCATTGCTTGGTATT+TGG | - | chr4.2:8734205-8734224 | MS.gene030591:CDS | 30.0% | |
| TTAGGAACCTTAATCTAACT+TGG | + | chr4.2:8734596-8734615 | None:intergenic | 30.0% | |
| TTCTCAAAACAAGCCTAAAA+AGG | - | chr4.2:8735487-8735506 | MS.gene030591:CDS | 30.0% | |
| ! | AATAGTTCCTTTTAGCAAGT+TGG | - | chr4.2:8734524-8734543 | MS.gene030591:CDS | 30.0% |
| ! | AATCTTGTTTATGTAATGCC+AGG | - | chr4.2:8734252-8734271 | MS.gene030591:CDS | 30.0% |
| ! | AATGGATTTAGAGATAGATG+AGG | - | chr4.2:8734797-8734816 | MS.gene030591:CDS | 30.0% |
| ! | AGTAAGAATAGAGCCTTTTT+AGG | + | chr4.2:8735503-8735522 | None:intergenic | 30.0% |
| ! | ATAGTTCCTTTTAGCAAGTT+GGG | - | chr4.2:8734525-8734544 | MS.gene030591:CDS | 30.0% |
| ! | GCAAATTTATCATCTTTTCG+AGG | - | chr4.2:8735344-8735363 | MS.gene030591:CDS | 30.0% |
| ! | TCTCATTGGAACAAAAGTAT+TGG | - | chr4.2:8735559-8735578 | MS.gene030591:CDS | 30.0% |
| ! | TTGCAATTTATTGTTGCTTG+AGG | - | chr4.2:8734473-8734492 | MS.gene030591:CDS | 30.0% |
| !! | ATTGGAACAAAAGTATTGGA+AGG | - | chr4.2:8735563-8735582 | MS.gene030591:CDS | 30.0% |
| !! | ATTTATCATCTTTTCGAGGT+TGG | - | chr4.2:8735348-8735367 | MS.gene030591:CDS | 30.0% |
| !! | TTTTAGCAAGTTGGGTTTTA+GGG | - | chr4.2:8734533-8734552 | MS.gene030591:CDS | 30.0% |
| !! | TTTTGAGAAGGTTTTTCATG+AGG | + | chr4.2:8735476-8735495 | None:intergenic | 30.0% |
| !!! | ACCATTTTGAAACACAAAGA+GGG | + | chr4.2:8735774-8735793 | None:intergenic | 30.0% |
| !!! | GGTAGTTTTAAACATATCCT+TGG | - | chr4.2:8734924-8734943 | MS.gene030591:CDS | 30.0% |
| !!! | TTGCAAGAAGTTTTGAAGAA+AGG | - | chr4.2:8735851-8735870 | MS.gene030591:CDS | 30.0% |
| !!! | TTTTTAGGCTTGTTTTGAGA+AGG | + | chr4.2:8735488-8735507 | None:intergenic | 30.0% |
| AAAGAAGATCAAGTGTATGC+TGG | - | chr4.2:8735425-8735444 | MS.gene030591:CDS | 35.0% | |
| AACCATTCTTTCCTAGATCA+AGG | - | chr4.2:8734634-8734653 | MS.gene030591:CDS | 35.0% | |
| AATATTGACAACACTGCCAT+CGG | + | chr4.2:8735042-8735061 | None:intergenic | 35.0% | |
| AATTAGGTACCTTGAAACTG+TGG | + | chr4.2:8734010-8734029 | None:intergenic | 35.0% | |
| ACCAAAGGATAGAACAATCT+TGG | + | chr4.2:8734335-8734354 | None:intergenic | 35.0% | |
| ACCATTCTTTCCTAGATCAA+GGG | - | chr4.2:8734635-8734654 | MS.gene030591:CDS | 35.0% | |
| ATAAACATTGGCGAACCATT+AGG | + | chr4.2:8735608-8735627 | None:intergenic | 35.0% | |
| ATCAAGAGAAAAAGTCTAGG+TGG | - | chr4.2:8734891-8734910 | MS.gene030591:CDS | 35.0% | |
| ATTTCCTTGGAACACTGATA+GGG | - | chr4.2:8735658-8735677 | MS.gene030591:CDS | 35.0% | |
| CAATTGAACTAGATCTTCCA+AGG | + | chr4.2:8734944-8734963 | None:intergenic | 35.0% | |
| CAATTGTACTAGATCTTCGA+TGG | + | chr4.2:8735022-8735041 | None:intergenic | 35.0% | |
| CGAAGATCTAGTACAATTGA+TGG | - | chr4.2:8735023-8735042 | MS.gene030591:CDS | 35.0% | |
| CTTACTATTGCTCTCTTACT+CGG | - | chr4.2:8735517-8735536 | MS.gene030591:CDS | 35.0% | |
| GAAATTGTTTGCGATTTCGA+TGG | - | chr4.2:8734366-8734385 | MS.gene030591:CDS | 35.0% | |
| GACTTGAATCAAGAGGATAA+GGG | + | chr4.2:8733957-8733976 | None:intergenic | 35.0% | |
| GCATACACTTGATCTTCTTT+AGG | + | chr4.2:8735425-8735444 | None:intergenic | 35.0% | |
| GGCCGAATATGAACAAAAAT+TGG | - | chr4.2:8735369-8735388 | MS.gene030591:CDS | 35.0% | |
| GTCAATATTGGTAAGAAACG+GGG | - | chr4.2:8735131-8735150 | MS.gene030591:CDS | 35.0% | |
| GTGTGACTATCCTTATTGAT+TGG | + | chr4.2:8734864-8734883 | None:intergenic | 35.0% | |
| GTGTTCGATATTCATCGATA+AGG | + | chr4.2:8735687-8735706 | None:intergenic | 35.0% | |
| TCATCTGGTAGATGAATAAG+CGG | + | chr4.2:8733979-8733998 | None:intergenic | 35.0% | |
| TCCAAGATTGTTCTATCCTT+TGG | - | chr4.2:8734331-8734350 | MS.gene030591:CDS | 35.0% | |
| TCCCTCTTTGTGTTTCAAAA+TGG | - | chr4.2:8735770-8735789 | MS.gene030591:CDS | 35.0% | |
| TCGCAAACAATTTCAAACAC+AGG | + | chr4.2:8734360-8734379 | None:intergenic | 35.0% | |
| TCTTGATTCCTTCCAAACAA+AGG | + | chr4.2:8735804-8735823 | None:intergenic | 35.0% | |
| TGCATCAAGAGAAAAAGTCT+AGG | - | chr4.2:8734888-8734907 | MS.gene030591:CDS | 35.0% | |
| TTGAGTGTTAAACCATTGCT+TGG | - | chr4.2:8734198-8734217 | MS.gene030591:CDS | 35.0% | |
| TTGCAAGTTAAGTCTTTGCA+GGG | + | chr4.2:8735837-8735856 | None:intergenic | 35.0% | |
| ! | AATATCGAACACGCTTTTGT+GGG | - | chr4.2:8735695-8735714 | MS.gene030591:CDS | 35.0% |
| ! | TCTTCTTTAGGAACTTGCAA+AGG | + | chr4.2:8735413-8735432 | None:intergenic | 35.0% |
| ! | TGAAAACTTCTCTGGGAATT+AGG | + | chr4.2:8734026-8734045 | None:intergenic | 35.0% |
| ! | TGACTATCCTTATTGATTGG+AGG | + | chr4.2:8734861-8734880 | None:intergenic | 35.0% |
| ! | TGTTATTGCCTTTGTTTGGA+AGG | - | chr4.2:8735793-8735812 | MS.gene030591:CDS | 35.0% |
| ! | TTGCATCTTCTGAGAAAGTT+TGG | - | chr4.2:8734079-8734098 | MS.gene030591:CDS | 35.0% |
| !! | ATCAAGTGTATGCTGGTTTA+TGG | - | chr4.2:8735432-8735451 | MS.gene030591:CDS | 35.0% |
| !! | ATGGTGTTATTGCCTTTGTT+TGG | - | chr4.2:8735789-8735808 | MS.gene030591:CDS | 35.0% |
| !! | CTAAAACCCAACTTGCTAAA+AGG | + | chr4.2:8734534-8734553 | None:intergenic | 35.0% |
| !! | CTTTTAGCAAGTTGGGTTTT+AGG | - | chr4.2:8734532-8734551 | MS.gene030591:CDS | 35.0% |
| !! | TCAAGTGTATGCTGGTTTAT+GGG | - | chr4.2:8735433-8735452 | MS.gene030591:CDS | 35.0% |
| !!! | AGTCTAGGTGGTTATTTTTG+TGG | - | chr4.2:8734903-8734922 | MS.gene030591:CDS | 35.0% |
| !!! | CACCATTTTGAAACACAAAG+AGG | + | chr4.2:8735775-8735794 | None:intergenic | 35.0% |
| AAGGGACAACAACTTCTCAT+TGG | - | chr4.2:8735545-8735564 | MS.gene030591:CDS | 40.0% | |
| AATTCTCAAGGGGAAGAAGT+TGG | - | chr4.2:8734771-8734790 | MS.gene030591:CDS | 40.0% | |
| ACATAGTCATCCCTTGATCT+AGG | + | chr4.2:8734648-8734667 | None:intergenic | 40.0% | |
| ATCTAGGAAGCAAGATAGTG+AGG | - | chr4.2:8734500-8734519 | MS.gene030591:CDS | 40.0% | |
| ATGGCTTGAACTAATCCCTA+TGG | + | chr4.2:8735249-8735268 | None:intergenic | 40.0% | |
| ATGTGTTTGCCACAGTTTCA+AGG | - | chr4.2:8733998-8734017 | MS.gene030591:CDS | 40.0% | |
| CAAGGAAATGGTTCAGATGA+AGG | + | chr4.2:8735647-8735666 | None:intergenic | 40.0% | |
| CATTTCCTTGGAACACTGAT+AGG | - | chr4.2:8735657-8735676 | MS.gene030591:CDS | 40.0% | |
| CGATTGTACTAGATCTTCGA+TGG | + | chr4.2:8735166-8735185 | None:intergenic | 40.0% | |
| CTATCAGTGTTCCAAGGAAA+TGG | + | chr4.2:8735659-8735678 | None:intergenic | 40.0% | |
| CTTCATCTGAACCATTTCCT+TGG | - | chr4.2:8735645-8735664 | MS.gene030591:CDS | 40.0% | |
| CTTGCAAGTTAAGTCTTTGC+AGG | + | chr4.2:8735838-8735857 | None:intergenic | 40.0% | |
| GAATCAAGAGGATAAGGGTA+GGG | + | chr4.2:8733952-8733971 | None:intergenic | 40.0% | |
| GATGGCAGTGTTGTCAATAT+TGG | - | chr4.2:8735041-8735060 | MS.gene030591:CDS | 40.0% | |
| GCTACAACAGAAACAAAACC+TGG | + | chr4.2:8734273-8734292 | None:intergenic | 40.0% | |
| GGACTTGAATCAAGAGGATA+AGG | + | chr4.2:8733958-8733977 | None:intergenic | 40.0% | |
| GGCTATGGATTCAAATATCC+AGG | - | chr4.2:8735734-8735753 | MS.gene030591:CDS | 40.0% | |
| GGGGTAGATTGTGTTTATCA+TGG | - | chr4.2:8734426-8734445 | MS.gene030591:CDS | 40.0% | |
| GTTCAACAGAATCCTGAACT+TGG | - | chr4.2:8734228-8734247 | MS.gene030591:CDS | 40.0% | |
| TCCCTTGATCTAGGAAAGAA+TGG | + | chr4.2:8734639-8734658 | None:intergenic | 40.0% | |
| TGAACCCAAATACCAAGCAA+TGG | + | chr4.2:8734213-8734232 | None:intergenic | 40.0% | |
| TGAATCAAGAGGATAAGGGT+AGG | + | chr4.2:8733953-8733972 | None:intergenic | 40.0% | |
| TTTCAAACACAGGTGACCAA+AGG | + | chr4.2:8734350-8734369 | None:intergenic | 40.0% | |
| ! | ATAAGCGGACTTGAATCAAG+AGG | + | chr4.2:8733964-8733983 | None:intergenic | 40.0% |
| ! | CGCTTTTCCTCCAATCAATA+AGG | - | chr4.2:8734851-8734870 | MS.gene030591:CDS | 40.0% |
| ! | GAATATCGAACACGCTTTTG+TGG | - | chr4.2:8735694-8735713 | MS.gene030591:CDS | 40.0% |
| ! | TGTTGCTTGAGGTTGAATCT+AGG | - | chr4.2:8734484-8734503 | MS.gene030591:CDS | 40.0% |
| !! | CAAGTGTATGCTGGTTTATG+GGG | - | chr4.2:8735434-8735453 | MS.gene030591:CDS | 40.0% |
| !! | CTCAGGAGGTTGTTTCTTTA+GGG | - | chr4.2:8734307-8734326 | MS.gene030591:CDS | 40.0% |
| ACTGTGGCAAACACATCATC+TGG | + | chr4.2:8733994-8734013 | None:intergenic | 45.0% | |
| AGCGTGTCGAATAATACCTC+AGG | - | chr4.2:8734290-8734309 | MS.gene030591:CDS | 45.0% | |
| CAAAGATCTAGTACAGCCGA+TGG | - | chr4.2:8735101-8735120 | MS.gene030591:CDS | 45.0% | |
| CACTCAAAGACCTTGTTGAG+TGG | - | chr4.2:8734133-8734152 | MS.gene030591:CDS | 45.0% | |
| CCTAAAGAAACAACCTCCTG+AGG | + | chr4.2:8734309-8734328 | None:intergenic | 45.0% | |
| CTCTCTTACTCGGAGTCAAA+GGG | - | chr4.2:8735527-8735546 | MS.gene030591:CDS | 45.0% | |
| CTTCATGGAAGGGAAGAAGA+GGG | - | chr4.2:8734405-8734424 | MS.gene030591:CDS | 45.0% | |
| GAACTAGGGACAATGCCATA+GGG | - | chr4.2:8735231-8735250 | MS.gene030591:CDS | 45.0% | |
| GTGTCGAATAATACCTCAGG+AGG | - | chr4.2:8734293-8734312 | MS.gene030591:CDS | 45.0% | |
| TCTTCATGGAAGGGAAGAAG+AGG | - | chr4.2:8734404-8734423 | MS.gene030591:CDS | 45.0% | |
| TTCATGGAAGGGAAGAAGAG+GGG | - | chr4.2:8734406-8734425 | MS.gene030591:CDS | 45.0% | |
| !! | AGGGAACCAGATTTTGATCC+TGG | + | chr4.2:8735755-8735774 | None:intergenic | 45.0% |
| !! | CCTCAGGAGGTTGTTTCTTT+AGG | - | chr4.2:8734306-8734325 | MS.gene030591:CDS | 45.0% |
| !! | TTTGTGGGAGAAGGTATTGC+AGG | - | chr4.2:8735710-8735729 | MS.gene030591:CDS | 45.0% |
| CACACTCTCTCCACTCAACA+AGG | + | chr4.2:8734146-8734165 | None:intergenic | 50.0% | |
| CAGCAACGCAACACAATAGC+TGG | - | chr4.2:8735065-8735084 | MS.gene030591:CDS | 50.0% | |
| CAGCTATTGTGTTGCGTTGC+TGG | + | chr4.2:8735067-8735086 | None:intergenic | 50.0% | |
| GAGTCCCTATCAGTGTTCCA+AGG | + | chr4.2:8735665-8735684 | None:intergenic | 50.0% | |
| GCTCTCTTACTCGGAGTCAA+AGG | - | chr4.2:8735526-8735545 | MS.gene030591:CDS | 50.0% | |
| GGAACTAGGGACAATGCCAT+AGG | - | chr4.2:8735230-8735249 | MS.gene030591:CDS | 50.0% | |
| TCATGGAAGGGAAGAAGAGG+GGG | - | chr4.2:8734407-8734426 | MS.gene030591:CDS | 50.0% | |
| TGGCGAACCATTAGGATGCA+AGG | + | chr4.2:8735600-8735619 | None:intergenic | 50.0% | |
| TTGTCAATGGGAGGCAGAGA+AGG | + | chr4.2:8735887-8735906 | None:intergenic | 50.0% | |
| ! | AGGGGAAGAAGTTGGCTCAA+TGG | - | chr4.2:8734779-8734798 | MS.gene030591:CDS | 50.0% |
| ! | GAACACGCTTTTGTGGGAGA+AGG | - | chr4.2:8735701-8735720 | MS.gene030591:CDS | 50.0% |
| ! | GGTTTATGGGGCGGTACTTT+TGG | - | chr4.2:8735446-8735465 | MS.gene030591:CDS | 50.0% |
| ! | TATGGGGCGGTACTTTTGGA+TGG | - | chr4.2:8735450-8735469 | MS.gene030591:CDS | 50.0% |
| !! | GAAGGTATTGCAGGTGGCTA+TGG | - | chr4.2:8735719-8735738 | MS.gene030591:CDS | 50.0% |
| !! | GTGTATGCTGGTTTATGGGG+CGG | - | chr4.2:8735437-8735456 | MS.gene030591:CDS | 50.0% |
| ACACCACAACCGCAGGAACT+AGG | - | chr4.2:8735216-8735235 | MS.gene030591:CDS | 55.0% | |
| CACCACAACCGCAGGAACTA+GGG | - | chr4.2:8735217-8735236 | MS.gene030591:CDS | 55.0% | |
| CATCAACACAACACAGCCGC+TGG | - | chr4.2:8734987-8735006 | MS.gene030591:CDS | 55.0% | |
| CGCTACGCCTTGCATCCTAA+TGG | - | chr4.2:8735590-8735609 | MS.gene030591:CDS | 55.0% | |
| GGCATTGTCCCTAGTTCCTG+CGG | + | chr4.2:8735228-8735247 | None:intergenic | 55.0% | |
| !! | GTGGGAGAAGGTATTGCAGG+TGG | - | chr4.2:8735713-8735732 | MS.gene030591:CDS | 55.0% |
| AACACAGCCGCTGGAGCAAG+GGG | - | chr4.2:8734996-8735015 | MS.gene030591:CDS | 60.0% | |
| ACAACACAGCCGCTGGAGCA+AGG | - | chr4.2:8734994-8735013 | MS.gene030591:CDS | 60.0% | |
| CAACACAGCCGCTGGAGCAA+GGG | - | chr4.2:8734995-8735014 | MS.gene030591:CDS | 60.0% | |
| CAGCAACACACCACAACCGC+AGG | - | chr4.2:8735209-8735228 | MS.gene030591:CDS | 60.0% | |
| GTCCCTAGTTCCTGCGGTTG+TGG | + | chr4.2:8735222-8735241 | None:intergenic | 60.0% | |
| TCGATGGCCCCTTGCTCCAG+CGG | + | chr4.2:8735006-8735025 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 8733940 | 8735952 | 8733940 | ID=MS.gene030591 |
| chr4.2 | mRNA | 8733940 | 8735952 | 8733940 | ID=MS.gene030591.t1;Parent=MS.gene030591 |
| chr4.2 | exon | 8733940 | 8735952 | 8733940 | ID=MS.gene030591.t1.exon1;Parent=MS.gene030591.t1 |
| chr4.2 | CDS | 8733940 | 8735952 | 8733940 | ID=cds.MS.gene030591.t1;Parent=MS.gene030591.t1 |
| Gene Sequence |
| Protein sequence |
