Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70188.t1 | RHN43144.1 | 92.8 | 693 | 49 | 1 | 1 | 693 | 1 | 692 | 0.00E+00 | 1098.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70188.t1 | Q8RWD6 | 39.8 | 694 | 262 | 11 | 14 | 691 | 19 | 572 | 1.8e-133 | 478.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70188.t1 | A0A396GUI7 | 92.8 | 693 | 49 | 1 | 1 | 693 | 1 | 692 | 0.0e+00 | 1098.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04998 | MS.gene70188 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene051226 | MS.gene70188 | 0.865248 | 6.78E-65 | -1.69E-46 |
| MS.gene057093 | MS.gene70188 | 0.847671 | 9.98E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70188 | MS.gene013291 | PPI |
| MS.gene70188 | MS.gene40916 | PPI |
| MS.gene49700 | MS.gene70188 | PPI |
| MS.gene70188 | MS.gene06374 | PPI |
| MS.gene70188 | MS.gene49700 | PPI |
| MS.gene70188 | MS.gene70191 | PPI |
| MS.gene70188 | MS.gene049252 | PPI |
| MS.gene030587 | MS.gene70188 | PPI |
| MS.gene70188 | MS.gene030591 | PPI |
| MS.gene70188 | MS.gene49697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70188.t1 | MTR_8g094190 | 79.076 | 693 | 81 | 7 | 1 | 693 | 1 | 629 | 0.0 | 1084 |
| MS.gene70188.t1 | MTR_8g094150 | 72.543 | 641 | 88 | 8 | 60 | 693 | 7 | 566 | 0.0 | 862 |
| MS.gene70188.t1 | MTR_3g096670 | 50.773 | 388 | 140 | 7 | 10 | 358 | 3 | 378 | 1.29e-121 | 376 |
| MS.gene70188.t1 | MTR_3g096670 | 70.563 | 231 | 68 | 0 | 462 | 692 | 370 | 600 | 7.79e-110 | 345 |
| MS.gene70188.t1 | MTR_3g096670 | 50.773 | 388 | 140 | 7 | 10 | 358 | 3 | 378 | 1.98e-121 | 376 |
| MS.gene70188.t1 | MTR_3g096670 | 70.563 | 231 | 68 | 0 | 462 | 692 | 370 | 600 | 9.40e-110 | 345 |
| MS.gene70188.t1 | MTR_0095s0110 | 92.818 | 181 | 13 | 0 | 513 | 693 | 1 | 181 | 4.19e-119 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70188.t1 | AT5G39450 | 44.776 | 335 | 155 | 9 | 14 | 334 | 19 | 337 | 5.80e-84 | 276 |
| MS.gene70188.t1 | AT5G39450 | 54.386 | 228 | 98 | 2 | 467 | 692 | 350 | 573 | 5.58e-76 | 255 |
| MS.gene70188.t1 | AT5G39460 | 45.593 | 329 | 159 | 7 | 14 | 334 | 12 | 328 | 3.66e-78 | 261 |
| MS.gene70188.t1 | AT5G39460 | 49.130 | 230 | 104 | 5 | 467 | 692 | 341 | 561 | 4.33e-62 | 218 |
| MS.gene70188.t1 | AT5G39490 | 50.958 | 261 | 108 | 5 | 14 | 262 | 11 | 263 | 8.76e-75 | 251 |
| MS.gene70188.t1 | AT5G39490 | 46.121 | 232 | 119 | 2 | 464 | 693 | 330 | 557 | 7.76e-63 | 219 |
| MS.gene70188.t1 | AT5G39480 | 50.958 | 261 | 108 | 5 | 14 | 262 | 12 | 264 | 1.92e-74 | 251 |
| MS.gene70188.t1 | AT5G39480 | 50.215 | 233 | 108 | 3 | 464 | 692 | 330 | 558 | 1.82e-67 | 232 |
| MS.gene70188.t1 | AT5G39470 | 37.363 | 91 | 32 | 1 | 14 | 104 | 96 | 161 | 2.22e-13 | 69.3 |
Find 125 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAGGAGGTTGTTTCTTT+AGG | 0.164715 | 4.1:-8050275 | MS.gene70188:CDS |
| TTAAACCATTGCTTGGTATT+TGG | 0.167263 | 4.1:-8050376 | MS.gene70188:CDS |
| ACCAAGTGTATGCTGGTTTA+TGG | 0.195342 | 4.1:-8049080 | MS.gene70188:CDS |
| GGTTTATGGGGCGGTACTTT+TGG | 0.207764 | 4.1:-8049066 | MS.gene70188:CDS |
| CTCAGGAGGTTGTTTCTTTA+GGG | 0.209032 | 4.1:-8050274 | MS.gene70188:CDS |
| TTGTATTCAGATTGAAAATA+AGG | 0.221115 | 4.1:-8049844 | MS.gene70188:CDS |
| TAGATTAGAGGTTCCTAATA+TGG | 0.222044 | 4.1:-8049985 | MS.gene70188:CDS |
| TGAAAACTTCTCTGGGAATT+AGG | 0.230889 | 4.1:+8050558 | None:intergenic |
| TAAACCATTGCTTGGTATTT+GGG | 0.255038 | 4.1:-8050375 | MS.gene70188:CDS |
| TCCCTCTTTGTACTTCAAAA+TGG | 0.282347 | 4.1:-8048742 | MS.gene70188:CDS |
| GCATACACTTGGTCTTCTTT+AGG | 0.294855 | 4.1:+8049090 | None:intergenic |
| CTAAAACCCAACCTCCTAAA+AGG | 0.296983 | 4.1:+8050047 | None:intergenic |
| TTGCATCTTCTGAGAAAGTT+TGG | 0.305192 | 4.1:-8050502 | MS.gene70188:CDS |
| AATGGCCCAGTTCCCATATT+AGG | 0.312411 | 4.1:+8049972 | None:intergenic |
| GGTGGCTTTAAACATATCTT+TGG | 0.314186 | 4.1:-8049666 | MS.gene70188:CDS |
| GAAGGTATTGCAAGTGGTTA+TGG | 0.318562 | 4.1:-8048793 | MS.gene70188:CDS |
| TCCAAGATTGTTCTATCCTT+TGG | 0.318701 | 4.1:-8050250 | MS.gene70188:CDS |
| TACTAGCCAAGTTAGATTAG+AGG | 0.330399 | 4.1:-8049997 | MS.gene70188:CDS |
| CTAGATCTTCGATGGTTACT+TGG | 0.335719 | 4.1:+8049579 | None:intergenic |
| CTTGCAAGTTAAGTCTTTGC+AGG | 0.339370 | 4.1:+8048677 | None:intergenic |
| CTTCTTCTGATCCGTTTCCT+TGG | 0.339771 | 4.1:-8048867 | MS.gene70188:CDS |
| CCAAGTGTATGCTGGTTTAT+GGG | 0.343323 | 4.1:-8049079 | MS.gene70188:CDS |
| CGTTTCCTTGGGAAACTGAT+AGG | 0.346496 | 4.1:-8048855 | MS.gene70188:CDS |
| ACTAAGATTGAAAACTTCTC+TGG | 0.349744 | 4.1:+8050550 | None:intergenic |
| CACAACACGGCCGCAGGAAC+TGG | 0.352037 | 4.1:-8049297 | MS.gene70188:CDS |
| AGTATGTTCAATGGAATTAG+AGG | 0.363663 | 4.1:-8049802 | MS.gene70188:CDS |
| ACAGAATCATCTCTTGATCT+AGG | 0.368549 | 4.1:+8049945 | None:intergenic |
| TTCTTCTGATCCGTTTCCTT+GGG | 0.370545 | 4.1:-8048866 | MS.gene70188:CDS |
| TAAACAAGATTACCAAGTTC+AGG | 0.378819 | 4.1:+8050341 | None:intergenic |
| AAATATCCAGGAGCAAAATC+TGG | 0.380597 | 4.1:-8048766 | MS.gene70188:CDS |
| ATGGCGATCTTGCCTTTGTT+TGG | 0.382428 | 4.1:-8048723 | MS.gene70188:CDS |
| GAGGTTCCTAATATGGGAAC+TGG | 0.384292 | 4.1:-8049978 | MS.gene70188:CDS |
| CGCTATGCATTGCATCCTAA+TGG | 0.401483 | 4.1:-8048922 | MS.gene70188:CDS |
| AAGAGCATTCCTTGTTCAAA+TGG | 0.407584 | 4.1:-8049886 | MS.gene70188:CDS |
| ATAAACATTGCTGAACCATT+AGG | 0.413798 | 4.1:+8048907 | None:intergenic |
| ACCAAAGGATAGAACAATCT+TGG | 0.422539 | 4.1:+8050249 | None:intergenic |
| CAGCATCACAAAATGATTGC+TGG | 0.437173 | 4.1:-8049381 | MS.gene70188:CDS |
| AGATTAGAGGTTCCTAATAT+GGG | 0.437762 | 4.1:-8049984 | MS.gene70188:CDS |
| TGTTGCTTGAGGTTGAATCT+AGG | 0.437835 | 4.1:-8050097 | MS.gene70188:CDS |
| GGACTTGAATCAAGAGGATA+AGG | 0.438645 | 4.1:+8050626 | None:intergenic |
| ATGTGTTTGCCACAGTTTCA+AGG | 0.439794 | 4.1:-8050583 | MS.gene70188:CDS |
| GCTTTGCATTCTTTATCTCA+TGG | 0.448007 | 4.1:+8049247 | None:intergenic |
| CTGCAACGCAACACGATGGC+AGG | 0.458482 | 4.1:-8049525 | MS.gene70188:CDS |
| GGGGTAGATTGTGTTTATCA+TGG | 0.463874 | 4.1:-8050155 | MS.gene70188:CDS |
| AATCTTGTTTATGTAATGCC+AGG | 0.464568 | 4.1:-8050329 | MS.gene70188:CDS |
| CGATCTTGCCTTTGTTTGGA+AGG | 0.465116 | 4.1:-8048719 | MS.gene70188:CDS |
| CAAAGATCGAGTGCAATTGA+TGG | 0.476070 | 4.1:-8049345 | MS.gene70188:CDS |
| GGTTATGGTTTCAAATATCC+AGG | 0.478786 | 4.1:-8048778 | MS.gene70188:CDS |
| AATGGAATTAGAGGTTGATC+AGG | 0.481928 | 4.1:-8049793 | MS.gene70188:CDS |
| GGCCGAATATGAACAAAAGT+TGG | 0.487071 | 4.1:-8049143 | MS.gene70188:CDS |
| GCTTGTAAACACATTTAAGC+AGG | 0.488155 | 4.1:+8048585 | None:intergenic |
| ACTGTGGCAAACACATCATC+TGG | 0.489039 | 4.1:+8050590 | None:intergenic |
| CCCATAAACCAGCATACACT+TGG | 0.497925 | 4.1:+8049079 | None:intergenic |
| GTGTCACTATCCTTATTGCT+TGG | 0.500008 | 4.1:+8049729 | None:intergenic |
| TTGAGTGTTAAACCATTGCT+TGG | 0.500161 | 4.1:-8050383 | MS.gene70188:CDS |
| AAGGGACAACAACTTCTCAT+TGG | 0.500982 | 4.1:-8048967 | MS.gene70188:CDS |
| TCACTATCCTTATTGCTTGG+AGG | 0.505487 | 4.1:+8049732 | None:intergenic |
| CTATCAGTTTCCCAAGGAAA+CGG | 0.510000 | 4.1:+8048856 | None:intergenic |
| TTGTAATTTATTGTTGCTTG+AGG | 0.510010 | 4.1:-8050108 | MS.gene70188:CDS |
| CTAAGATTGAAAACTTCTCT+GGG | 0.523415 | 4.1:+8050551 | None:intergenic |
| AGGGGAAGAAGTATGTTCAA+TGG | 0.525453 | 4.1:-8049811 | MS.gene70188:CDS |
| GTTCAACAGAATCCTGAACT+TGG | 0.526928 | 4.1:-8050353 | MS.gene70188:CDS |
| GAAAATAAGGAAAATTCTCA+AGG | 0.528849 | 4.1:-8049831 | MS.gene70188:CDS |
| TAGGAACCTCTAATCTAACT+TGG | 0.531329 | 4.1:+8049991 | None:intergenic |
| GGAACTGGAGAGAATGACAT+AGG | 0.532645 | 4.1:-8049282 | MS.gene70188:CDS |
| GAAATTGTTTGCGATTTCGA+TGG | 0.532974 | 4.1:-8050215 | MS.gene70188:CDS |
| CACTCAAAGACCTTGTTGAG+TGG | 0.537136 | 4.1:-8050448 | MS.gene70188:CDS |
| AAAGAAGACCAAGTGTATGC+TGG | 0.538643 | 4.1:-8049087 | MS.gene70188:CDS |
| ATGGCTCAAATGTATAAGCT+TGG | 0.541711 | 4.1:-8049867 | MS.gene70188:CDS |
| CAAGGAAACGGATCAGAAGA+AGG | 0.543211 | 4.1:+8048868 | None:intergenic |
| GCTCTCGTATTGGGAGTCGA+AGG | 0.543524 | 4.1:-8048986 | MS.gene70188:CDS |
| ATCAAGAGAAAGAGTCTTGG+TGG | 0.546154 | 4.1:-8049699 | MS.gene70188:CDS |
| ACAAGAGACGATCAAAGATC+TGG | 0.547199 | 4.1:-8049501 | MS.gene70188:CDS |
| TCTTCATGGTAGGGAAGAAG+AGG | 0.559499 | 4.1:-8050177 | MS.gene70188:CDS |
| CACACTCTCTCCACTCAACA+AGG | 0.560982 | 4.1:+8050438 | None:intergenic |
| CAAGTGTATGCTGGTTTATG+GGG | 0.561849 | 4.1:-8049078 | MS.gene70188:CDS |
| CAGCAACACAACACGGCCGC+AGG | 0.567323 | 4.1:-8049303 | MS.gene70188:CDS |
| TGAATCAAGAGGATAAGGGT+AGG | 0.569984 | 4.1:+8050631 | None:intergenic |
| CTCTCGTATTGGGAGTCGAA+GGG | 0.570981 | 4.1:-8048985 | MS.gene70188:CDS |
| CATCAATACATCACAACCGC+AGG | 0.571677 | 4.1:-8049603 | MS.gene70188:CDS |
| TTGCAAGTTAAGTCTTTGCA+GGG | 0.574271 | 4.1:+8048678 | None:intergenic |
| AAAGATCGAGTGCAATTGAT+GGG | 0.578510 | 4.1:-8049344 | MS.gene70188:CDS |
| AGCGTGTCGAATAATACCTC+AGG | 0.579720 | 4.1:-8050291 | MS.gene70188:CDS |
| TGCATCAAGAGAAAGAGTCT+TGG | 0.581200 | 4.1:-8049702 | MS.gene70188:CDS |
| AATATTGACAACACTGCCAT+CGG | 0.582834 | 4.1:+8049473 | None:intergenic |
| AAAATAAGGAAAATTCTCAA+GGG | 0.585290 | 4.1:-8049830 | MS.gene70188:CDS |
| TTGTCAATAGGAGGCAGAGA+AGG | 0.586071 | 4.1:+8048628 | None:intergenic |
| ACATTTGAGCCATTTGAACA+AGG | 0.588906 | 4.1:+8049877 | None:intergenic |
| GAATCAAGAGGATAAGGGTA+GGG | 0.590042 | 4.1:+8050632 | None:intergenic |
| CGAAGATCTAGTACAATCGA+TGG | 0.590437 | 4.1:-8049423 | MS.gene70188:CDS |
| CGGTCGAACTAGATCTTCGA+TGG | 0.597888 | 4.1:+8049571 | None:intergenic |
| GAACTGGAGAGAATGACATA+GGG | 0.599521 | 4.1:-8049281 | MS.gene70188:CDS |
| GTCATTCTCTCCAGTTCCTG+CGG | 0.600499 | 4.1:+8049287 | None:intergenic |
| GCGGGAGAAGGTATTGCAAG+TGG | 0.601335 | 4.1:-8048799 | MS.gene70188:CDS |
| TCTAGATTCCTTCCAAACAA+AGG | 0.601462 | 4.1:+8048711 | None:intergenic |
| CGATTGTACTAGATCTTCGA+TGG | 0.602215 | 4.1:+8049427 | None:intergenic |
| TCTTCTTTAGGAACTTGCAA+AGG | 0.603983 | 4.1:+8049102 | None:intergenic |
| CTTCATGGTAGGGAAGAAGA+GGG | 0.605927 | 4.1:-8050176 | MS.gene70188:CDS |
| TCATGGTAGGGAAGAAGAGG+GGG | 0.607393 | 4.1:-8050174 | MS.gene70188:CDS |
| TCTCTTGATCTAGGAAACAA+TGG | 0.607460 | 4.1:+8049954 | None:intergenic |
| GACTTGAATCAAGAGGATAA+GGG | 0.608865 | 4.1:+8050627 | None:intergenic |
| TAGGAAACAAGATAATAATG+AGG | 0.608877 | 4.1:-8050078 | MS.gene70188:CDS |
| TTCATGGTAGGGAAGAAGAG+GGG | 0.613552 | 4.1:-8050175 | MS.gene70188:CDS |
| AATATTGACAGCACTGCCAT+CGG | 0.613779 | 4.1:+8049551 | None:intergenic |
| GCTACAACAGAAACAAAACC+TGG | 0.618777 | 4.1:+8050311 | None:intergenic |
| TGAACCCAAATACCAAGCAA+TGG | 0.622950 | 4.1:+8050371 | None:intergenic |
| CCTAAAGAAACAACCTCCTG+AGG | 0.625560 | 4.1:+8050275 | None:intergenic |
| TTTCAAACACAGGTGACCAA+AGG | 0.627505 | 4.1:+8050234 | None:intergenic |
| CGAAGATCTAGTTCGACCGA+TGG | 0.627815 | 4.1:-8049567 | MS.gene70188:CDS |
| GTGTATGCTGGTTTATGGGG+CGG | 0.628467 | 4.1:-8049075 | MS.gene70188:CDS |
| TGCAACGCAACACGATGGCA+GGG | 0.630900 | 4.1:-8049524 | MS.gene70188:CDS |
| CAAAGATCTGGTACAACCGA+TGG | 0.633916 | 4.1:-8049489 | MS.gene70188:CDS |
| AGGTTCCTAATATGGGAACT+GGG | 0.633956 | 4.1:-8049977 | MS.gene70188:CDS |
| TCGCAAACAATTTCAAACAC+AGG | 0.643858 | 4.1:+8050224 | None:intergenic |
| GAGTTCCTATCAGTTTCCCA+AGG | 0.655964 | 4.1:+8048850 | None:intergenic |
| TATTGATCAGCAACACAACA+CGG | 0.656491 | 4.1:-8049310 | MS.gene70188:CDS |
| TCATCTGGTAGATGAATAAG+CGG | 0.658669 | 4.1:+8050605 | None:intergenic |
| AAATAAGGAAAATTCTCAAG+GGG | 0.659702 | 4.1:-8049829 | MS.gene70188:CDS |
| TCGATGGTTACTTGGCCCTG+CGG | 0.661597 | 4.1:+8049587 | None:intergenic |
| ATAAGCGGACTTGAATCAAG+AGG | 0.663015 | 4.1:+8050620 | None:intergenic |
| ATCAATACATCACAACCGCA+GGG | 0.666747 | 4.1:-8049602 | MS.gene70188:CDS |
| GTGTCGAATAATACCTCAGG+AGG | 0.669560 | 4.1:-8050288 | MS.gene70188:CDS |
| AATTAGGTACCTTGAAACTG+TGG | 0.670120 | 4.1:+8050574 | None:intergenic |
| AGATCTAGTACAATCGATGG+AGG | 0.682974 | 4.1:-8049420 | MS.gene70188:CDS |
| TGATCTGCAACGCAACACGA+TGG | 0.698856 | 4.1:-8049529 | MS.gene70188:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGAAAAATTGTCAAT+AGG | + | chr4.1:8050610-8050629 | None:intergenic | 15.0% |
| !! | AAAATAAGGAAAATTCTCAA+GGG | - | chr4.1:8049393-8049412 | MS.gene70188:CDS | 20.0% |
| !! | TTGTATTCAGATTGAAAATA+AGG | - | chr4.1:8049379-8049398 | MS.gene70188:CDS | 20.0% |
| !!! | TCTAATATGTTTTTTCTTCA+TGG | - | chr4.1:8049032-8049051 | MS.gene70188:CDS | 20.0% |
| !!! | TGTAAATTTTCAGAAAGATT+TGG | - | chr4.1:8049298-8049317 | MS.gene70188:CDS | 20.0% |
| ! | AAATAAGGAAAATTCTCAAG+GGG | - | chr4.1:8049394-8049413 | MS.gene70188:CDS | 25.0% |
| ! | ATTGGAACAAAAATATTGGA+AGG | - | chr4.1:8050274-8050293 | MS.gene70188:CDS | 25.0% |
| ! | GAAAATAAGGAAAATTCTCA+AGG | - | chr4.1:8049392-8049411 | MS.gene70188:CDS | 25.0% |
| ! | TAGGAAACAAGATAATAATG+AGG | - | chr4.1:8049145-8049164 | MS.gene70188:CDS | 25.0% |
| ! | TATGAAAAATTGTCAATAGG+AGG | + | chr4.1:8050607-8050626 | None:intergenic | 25.0% |
| ! | TCTCATTGGAACAAAAATAT+TGG | - | chr4.1:8050270-8050289 | MS.gene70188:CDS | 25.0% |
| !! | AACCAACTTTTGTTCATATT+CGG | + | chr4.1:8050085-8050104 | None:intergenic | 25.0% |
| !! | TTGTAATTTATTGTTGCTTG+AGG | - | chr4.1:8049115-8049134 | MS.gene70188:CDS | 25.0% |
| !!! | AGAAAGAATAAAGCCTTTTT+TGG | + | chr4.1:8050214-8050233 | None:intergenic | 25.0% |
| !!! | ATATGTTTTTTCTTCATGGT+AGG | - | chr4.1:8049036-8049055 | MS.gene70188:CDS | 25.0% |
| !!! | TATGTTTTTTCTTCATGGTA+GGG | - | chr4.1:8049037-8049056 | MS.gene70188:CDS | 25.0% |
| ACTAAGATTGAAAACTTCTC+TGG | + | chr4.1:8048676-8048695 | None:intergenic | 30.0% | |
| AGATTAGAGGTTCCTAATAT+GGG | - | chr4.1:8049239-8049258 | MS.gene70188:CDS | 30.0% | |
| AGTATGTTCAATGGAATTAG+AGG | - | chr4.1:8049421-8049440 | MS.gene70188:CDS | 30.0% | |
| ATAAACATTGCTGAACCATT+AGG | + | chr4.1:8050319-8050338 | None:intergenic | 30.0% | |
| CTAAGATTGAAAACTTCTCT+GGG | + | chr4.1:8048675-8048694 | None:intergenic | 30.0% | |
| TAAACAAGATTACCAAGTTC+AGG | + | chr4.1:8048885-8048904 | None:intergenic | 30.0% | |
| TAAACCATTGCTTGGTATTT+GGG | - | chr4.1:8048848-8048867 | MS.gene70188:CDS | 30.0% | |
| TAGATTAGAGGTTCCTAATA+TGG | - | chr4.1:8049238-8049257 | MS.gene70188:CDS | 30.0% | |
| TTAAACCATTGCTTGGTATT+TGG | - | chr4.1:8048847-8048866 | MS.gene70188:CDS | 30.0% | |
| TTCTCAAAACAAGCCAAAAA+AGG | - | chr4.1:8050198-8050217 | MS.gene70188:CDS | 30.0% | |
| ! | AATATTGAACATGCTTTTGC+GGG | - | chr4.1:8050406-8050425 | MS.gene70188:CDS | 30.0% |
| ! | AATCTTGTTTATGTAATGCC+AGG | - | chr4.1:8048894-8048913 | MS.gene70188:CDS | 30.0% |
| ! | ATGAGGTAATGATTCCTTTT+AGG | - | chr4.1:8049162-8049181 | MS.gene70188:CDS | 30.0% |
| ! | GAATATTGAACATGCTTTTG+CGG | - | chr4.1:8050405-8050424 | MS.gene70188:CDS | 30.0% |
| ! | GCAAAATTATCATCTTTTCG+AGG | - | chr4.1:8050055-8050074 | MS.gene70188:CDS | 30.0% |
| !! | AACTTTTGAAGAAAGGAAGA+AGG | - | chr4.1:8050569-8050588 | MS.gene70188:CDS | 30.0% |
| !! | AATTATCATCTTTTCGAGGT+TGG | - | chr4.1:8050059-8050078 | MS.gene70188:CDS | 30.0% |
| !! | TTGCAAGAACTTTTGAAGAA+AGG | - | chr4.1:8050562-8050581 | MS.gene70188:CDS | 30.0% |
| !! | TTTTGAGAAGGTTTTTCATG+AGG | + | chr4.1:8050187-8050206 | None:intergenic | 30.0% |
| !!! | TTTTTTGGCTTGTTTTGAGA+AGG | + | chr4.1:8050199-8050218 | None:intergenic | 30.0% |
| AAAGATCGAGTGCAATTGAT+GGG | - | chr4.1:8049879-8049898 | MS.gene70188:CDS | 35.0% | |
| AAATATCCAGGAGCAAAATC+TGG | - | chr4.1:8050457-8050476 | MS.gene70188:CDS | 35.0% | |
| AATATTGACAACACTGCCAT+CGG | + | chr4.1:8049753-8049772 | None:intergenic | 35.0% | |
| AATTAGGTACCTTGAAACTG+TGG | + | chr4.1:8048652-8048671 | None:intergenic | 35.0% | |
| ACAGAATCATCTCTTGATCT+AGG | + | chr4.1:8049281-8049300 | None:intergenic | 35.0% | |
| ACATTTGAGCCATTTGAACA+AGG | + | chr4.1:8049349-8049368 | None:intergenic | 35.0% | |
| ACCAAAGGATAGAACAATCT+TGG | + | chr4.1:8048977-8048996 | None:intergenic | 35.0% | |
| ATGGCTCAAATGTATAAGCT+TGG | - | chr4.1:8049356-8049375 | MS.gene70188:CDS | 35.0% | |
| GAAATTGTTTGCGATTTCGA+TGG | - | chr4.1:8049008-8049027 | MS.gene70188:CDS | 35.0% | |
| GACTTGAATCAAGAGGATAA+GGG | + | chr4.1:8048599-8048618 | None:intergenic | 35.0% | |
| GCTTGTAAACACATTTAAGC+AGG | + | chr4.1:8050641-8050660 | None:intergenic | 35.0% | |
| GCTTTGCATTCTTTATCTCA+TGG | + | chr4.1:8049979-8049998 | None:intergenic | 35.0% | |
| GGTTATGGTTTCAAATATCC+AGG | - | chr4.1:8050445-8050464 | MS.gene70188:CDS | 35.0% | |
| TACTAGCCAAGTTAGATTAG+AGG | - | chr4.1:8049226-8049245 | MS.gene70188:CDS | 35.0% | |
| TAGGAACCTCTAATCTAACT+TGG | + | chr4.1:8049235-8049254 | None:intergenic | 35.0% | |
| TATTGATCAGCAACACAACA+CGG | - | chr4.1:8049913-8049932 | MS.gene70188:CDS | 35.0% | |
| TCATCTGGTAGATGAATAAG+CGG | + | chr4.1:8048621-8048640 | None:intergenic | 35.0% | |
| TCCAAGATTGTTCTATCCTT+TGG | - | chr4.1:8048973-8048992 | MS.gene70188:CDS | 35.0% | |
| TCCCTCTTTGTACTTCAAAA+TGG | - | chr4.1:8050481-8050500 | MS.gene70188:CDS | 35.0% | |
| TCGCAAACAATTTCAAACAC+AGG | + | chr4.1:8049002-8049021 | None:intergenic | 35.0% | |
| TCTAGATTCCTTCCAAACAA+AGG | + | chr4.1:8050515-8050534 | None:intergenic | 35.0% | |
| TCTCTTGATCTAGGAAACAA+TGG | + | chr4.1:8049272-8049291 | None:intergenic | 35.0% | |
| TTGAGTGTTAAACCATTGCT+TGG | - | chr4.1:8048840-8048859 | MS.gene70188:CDS | 35.0% | |
| TTGCAAGTTAAGTCTTTGCA+GGG | + | chr4.1:8050548-8050567 | None:intergenic | 35.0% | |
| ! | AATGGAATTAGAGGTTGATC+AGG | - | chr4.1:8049430-8049449 | MS.gene70188:CDS | 35.0% |
| ! | AGGTAATGATTCCTTTTAGG+AGG | - | chr4.1:8049165-8049184 | MS.gene70188:CDS | 35.0% |
| ! | CTTTCTTTTGCTCTCGTATT+GGG | - | chr4.1:8050228-8050247 | MS.gene70188:CDS | 35.0% |
| ! | TCTTCTTTAGGAACTTGCAA+AGG | + | chr4.1:8050124-8050143 | None:intergenic | 35.0% |
| ! | TCTTTCTTTTGCTCTCGTAT+TGG | - | chr4.1:8050227-8050246 | MS.gene70188:CDS | 35.0% |
| ! | TGAAAACTTCTCTGGGAATT+AGG | + | chr4.1:8048668-8048687 | None:intergenic | 35.0% |
| ! | TTGCATCTTCTGAGAAAGTT+TGG | - | chr4.1:8048721-8048740 | MS.gene70188:CDS | 35.0% |
| !! | AAGAGCATTCCTTGTTCAAA+TGG | - | chr4.1:8049337-8049356 | MS.gene70188:CDS | 35.0% |
| !! | AATGATTCCTTTTAGGAGGT+TGG | - | chr4.1:8049169-8049188 | MS.gene70188:CDS | 35.0% |
| !! | AGAGTCTTGGTGGTTATTTT+TGG | - | chr4.1:8049534-8049553 | MS.gene70188:CDS | 35.0% |
| !! | ATGATTCCTTTTAGGAGGTT+GGG | - | chr4.1:8049170-8049189 | MS.gene70188:CDS | 35.0% |
| !! | GGTGGCTTTAAACATATCTT+TGG | - | chr4.1:8049557-8049576 | MS.gene70188:CDS | 35.0% |
| !! | TTTTAGGAGGTTGGGTTTTA+GGG | - | chr4.1:8049178-8049197 | MS.gene70188:CDS | 35.0% |
| !!! | AGTCTTGGTGGTTATTTTTG+GGG | - | chr4.1:8049536-8049555 | MS.gene70188:CDS | 35.0% |
| !!! | GAAAGATTTGGTGCTTTTGA+AGG | - | chr4.1:8049310-8049329 | MS.gene70188:CDS | 35.0% |
| !!! | GAGTCTTGGTGGTTATTTTT+GGG | - | chr4.1:8049535-8049554 | MS.gene70188:CDS | 35.0% |
| !!! | GCCATTTTGAAGTACAAAGA+GGG | + | chr4.1:8050485-8050504 | None:intergenic | 35.0% |
| AAAGAAGACCAAGTGTATGC+TGG | - | chr4.1:8050136-8050155 | MS.gene70188:CDS | 40.0% | |
| AAGGGACAACAACTTCTCAT+TGG | - | chr4.1:8050256-8050275 | MS.gene70188:CDS | 40.0% | |
| AATATTGACAGCACTGCCAT+CGG | + | chr4.1:8049675-8049694 | None:intergenic | 40.0% | |
| ACAAGAGACGATCAAAGATC+TGG | - | chr4.1:8049722-8049741 | MS.gene70188:CDS | 40.0% | |
| AGATCTAGTACAATCGATGG+AGG | - | chr4.1:8049803-8049822 | MS.gene70188:CDS | 40.0% | |
| AGGTTCCTAATATGGGAACT+GGG | - | chr4.1:8049246-8049265 | MS.gene70188:CDS | 40.0% | |
| ATCAAGAGAAAGAGTCTTGG+TGG | - | chr4.1:8049524-8049543 | MS.gene70188:CDS | 40.0% | |
| ATCAATACATCACAACCGCA+GGG | - | chr4.1:8049621-8049640 | MS.gene70188:CDS | 40.0% | |
| ATGTGTTTGCCACAGTTTCA+AGG | - | chr4.1:8048640-8048659 | MS.gene70188:CDS | 40.0% | |
| CAAAGATCGAGTGCAATTGA+TGG | - | chr4.1:8049878-8049897 | MS.gene70188:CDS | 40.0% | |
| CAGCATCACAAAATGATTGC+TGG | - | chr4.1:8049842-8049861 | MS.gene70188:CDS | 40.0% | |
| CGAAGATCTAGTACAATCGA+TGG | - | chr4.1:8049800-8049819 | MS.gene70188:CDS | 40.0% | |
| CGATTGTACTAGATCTTCGA+TGG | + | chr4.1:8049799-8049818 | None:intergenic | 40.0% | |
| CTAAAACCCAACCTCCTAAA+AGG | + | chr4.1:8049179-8049198 | None:intergenic | 40.0% | |
| CTAGATCTTCGATGGTTACT+TGG | + | chr4.1:8049647-8049666 | None:intergenic | 40.0% | |
| CTATCAGTTTCCCAAGGAAA+CGG | + | chr4.1:8050370-8050389 | None:intergenic | 40.0% | |
| CTTGCAAGTTAAGTCTTTGC+AGG | + | chr4.1:8050549-8050568 | None:intergenic | 40.0% | |
| GAACTGGAGAGAATGACATA+GGG | - | chr4.1:8049942-8049961 | MS.gene70188:CDS | 40.0% | |
| GAATCAAGAGGATAAGGGTA+GGG | + | chr4.1:8048594-8048613 | None:intergenic | 40.0% | |
| GCTACAACAGAAACAAAACC+TGG | + | chr4.1:8048915-8048934 | None:intergenic | 40.0% | |
| GGACTTGAATCAAGAGGATA+AGG | + | chr4.1:8048600-8048619 | None:intergenic | 40.0% | |
| GGCCGAATATGAACAAAAGT+TGG | - | chr4.1:8050080-8050099 | MS.gene70188:CDS | 40.0% | |
| GGGGTAGATTGTGTTTATCA+TGG | - | chr4.1:8049068-8049087 | MS.gene70188:CDS | 40.0% | |
| GTTCAACAGAATCCTGAACT+TGG | - | chr4.1:8048870-8048889 | MS.gene70188:CDS | 40.0% | |
| TCACTATCCTTATTGCTTGG+AGG | + | chr4.1:8049494-8049513 | None:intergenic | 40.0% | |
| TGAACCCAAATACCAAGCAA+TGG | + | chr4.1:8048855-8048874 | None:intergenic | 40.0% | |
| TGAATCAAGAGGATAAGGGT+AGG | + | chr4.1:8048595-8048614 | None:intergenic | 40.0% | |
| TGCATCAAGAGAAAGAGTCT+TGG | - | chr4.1:8049521-8049540 | MS.gene70188:CDS | 40.0% | |
| TTCTTCTGATCCGTTTCCTT+GGG | - | chr4.1:8050357-8050376 | MS.gene70188:CDS | 40.0% | |
| TTTCAAACACAGGTGACCAA+AGG | + | chr4.1:8048992-8049011 | None:intergenic | 40.0% | |
| ! | AGGGGAAGAAGTATGTTCAA+TGG | - | chr4.1:8049412-8049431 | MS.gene70188:CDS | 40.0% |
| ! | ATAAGCGGACTTGAATCAAG+AGG | + | chr4.1:8048606-8048625 | None:intergenic | 40.0% |
| ! | CTCTTTTCCTCCAAGCAATA+AGG | - | chr4.1:8049484-8049503 | MS.gene70188:CDS | 40.0% |
| ! | GCATACACTTGGTCTTCTTT+AGG | + | chr4.1:8050136-8050155 | None:intergenic | 40.0% |
| ! | GTGTCACTATCCTTATTGCT+TGG | + | chr4.1:8049497-8049516 | None:intergenic | 40.0% |
| ! | TGTTGCTTGAGGTTGAATCT+AGG | - | chr4.1:8049126-8049145 | MS.gene70188:CDS | 40.0% |
| !! | ACCAAGTGTATGCTGGTTTA+TGG | - | chr4.1:8050143-8050162 | MS.gene70188:CDS | 40.0% |
| !! | CAAGTGTATGCTGGTTTATG+GGG | - | chr4.1:8050145-8050164 | MS.gene70188:CDS | 40.0% |
| !! | CCAAGTGTATGCTGGTTTAT+GGG | - | chr4.1:8050144-8050163 | MS.gene70188:CDS | 40.0% |
| !! | CTCAGGAGGTTGTTTCTTTA+GGG | - | chr4.1:8048949-8048968 | MS.gene70188:CDS | 40.0% |
| !! | CTTTTAGGAGGTTGGGTTTT+AGG | - | chr4.1:8049177-8049196 | MS.gene70188:CDS | 40.0% |
| !! | GAAGGTATTGCAAGTGGTTA+TGG | - | chr4.1:8050430-8050449 | MS.gene70188:CDS | 40.0% |
| !!! | CGCCATTTTGAAGTACAAAG+AGG | + | chr4.1:8050486-8050505 | None:intergenic | 40.0% |
| AATGGCCCAGTTCCCATATT+AGG | + | chr4.1:8049254-8049273 | None:intergenic | 45.0% | |
| ACTGTGGCAAACACATCATC+TGG | + | chr4.1:8048636-8048655 | None:intergenic | 45.0% | |
| AGCGTGTCGAATAATACCTC+AGG | - | chr4.1:8048932-8048951 | MS.gene70188:CDS | 45.0% | |
| ATGGCGATCTTGCCTTTGTT+TGG | - | chr4.1:8050500-8050519 | MS.gene70188:CDS | 45.0% | |
| CAAAGATCTGGTACAACCGA+TGG | - | chr4.1:8049734-8049753 | MS.gene70188:CDS | 45.0% | |
| CAAGGAAACGGATCAGAAGA+AGG | + | chr4.1:8050358-8050377 | None:intergenic | 45.0% | |
| CACTCAAAGACCTTGTTGAG+TGG | - | chr4.1:8048775-8048794 | MS.gene70188:CDS | 45.0% | |
| CATCAATACATCACAACCGC+AGG | - | chr4.1:8049620-8049639 | MS.gene70188:CDS | 45.0% | |
| CCCATAAACCAGCATACACT+TGG | + | chr4.1:8050147-8050166 | None:intergenic | 45.0% | |
| CCTAAAGAAACAACCTCCTG+AGG | + | chr4.1:8048951-8048970 | None:intergenic | 45.0% | |
| CGCTATGCATTGCATCCTAA+TGG | - | chr4.1:8050301-8050320 | MS.gene70188:CDS | 45.0% | |
| CGTTTCCTTGGGAAACTGAT+AGG | - | chr4.1:8050368-8050387 | MS.gene70188:CDS | 45.0% | |
| CTTCATGGTAGGGAAGAAGA+GGG | - | chr4.1:8049047-8049066 | MS.gene70188:CDS | 45.0% | |
| CTTCTTCTGATCCGTTTCCT+TGG | - | chr4.1:8050356-8050375 | MS.gene70188:CDS | 45.0% | |
| GAGGTTCCTAATATGGGAAC+TGG | - | chr4.1:8049245-8049264 | MS.gene70188:CDS | 45.0% | |
| GAGTTCCTATCAGTTTCCCA+AGG | + | chr4.1:8050376-8050395 | None:intergenic | 45.0% | |
| GGAACTGGAGAGAATGACAT+AGG | - | chr4.1:8049941-8049960 | MS.gene70188:CDS | 45.0% | |
| GTGTCGAATAATACCTCAGG+AGG | - | chr4.1:8048935-8048954 | MS.gene70188:CDS | 45.0% | |
| TCTTCATGGTAGGGAAGAAG+AGG | - | chr4.1:8049046-8049065 | MS.gene70188:CDS | 45.0% | |
| TTCATGGTAGGGAAGAAGAG+GGG | - | chr4.1:8049048-8049067 | MS.gene70188:CDS | 45.0% | |
| TTGTCAATAGGAGGCAGAGA+AGG | + | chr4.1:8050598-8050617 | None:intergenic | 45.0% | |
| ! | CGATCTTGCCTTTGTTTGGA+AGG | - | chr4.1:8050504-8050523 | MS.gene70188:CDS | 45.0% |
| ! | GTTTATGGGGCGGTACTTTT+GGG | - | chr4.1:8050158-8050177 | MS.gene70188:CDS | 45.0% |
| !! | CCTCAGGAGGTTGTTTCTTT+AGG | - | chr4.1:8048948-8048967 | MS.gene70188:CDS | 45.0% |
| !!! | CTTGGTGGTTATTTTTGGGG+TGG | - | chr4.1:8049539-8049558 | MS.gene70188:CDS | 45.0% |
| CACACTCTCTCCACTCAACA+AGG | + | chr4.1:8048788-8048807 | None:intergenic | 50.0% | |
| CGGTCGAACTAGATCTTCGA+TGG | + | chr4.1:8049655-8049674 | None:intergenic | 50.0% | |
| CTCTCGTATTGGGAGTCGAA+GGG | - | chr4.1:8050238-8050257 | MS.gene70188:CDS | 50.0% | |
| GTCATTCTCTCCAGTTCCTG+CGG | + | chr4.1:8049939-8049958 | None:intergenic | 50.0% | |
| TCATGGTAGGGAAGAAGAGG+GGG | - | chr4.1:8049049-8049068 | MS.gene70188:CDS | 50.0% | |
| TGATCTGCAACGCAACACGA+TGG | - | chr4.1:8049694-8049713 | MS.gene70188:CDS | 50.0% | |
| ! | AGGGAACCAGATTTTGCTCC+TGG | + | chr4.1:8050466-8050485 | None:intergenic | 50.0% |
| ! | CGAAGATCTAGTTCGACCGA+TGG | - | chr4.1:8049656-8049675 | MS.gene70188:CDS | 50.0% |
| ! | GAACATGCTTTTGCGGGAGA+AGG | - | chr4.1:8050412-8050431 | MS.gene70188:CDS | 50.0% |
| ! | GGTTTATGGGGCGGTACTTT+TGG | - | chr4.1:8050157-8050176 | MS.gene70188:CDS | 50.0% |
| !! | GTGTATGCTGGTTTATGGGG+CGG | - | chr4.1:8050148-8050167 | MS.gene70188:CDS | 50.0% |
| GCTCTCGTATTGGGAGTCGA+AGG | - | chr4.1:8050237-8050256 | MS.gene70188:CDS | 55.0% | |
| TCGATGGTTACTTGGCCCTG+CGG | + | chr4.1:8049639-8049658 | None:intergenic | 55.0% | |
| TGCAACGCAACACGATGGCA+GGG | - | chr4.1:8049699-8049718 | MS.gene70188:CDS | 55.0% | |
| ! | TATGGGGCGGTACTTTTGGG+TGG | - | chr4.1:8050161-8050180 | MS.gene70188:CDS | 55.0% |
| !! | GCGGGAGAAGGTATTGCAAG+TGG | - | chr4.1:8050424-8050443 | MS.gene70188:CDS | 55.0% |
| CTGCAACGCAACACGATGGC+AGG | - | chr4.1:8049698-8049717 | MS.gene70188:CDS | 60.0% | |
| CACAACACGGCCGCAGGAAC+TGG | - | chr4.1:8049926-8049945 | MS.gene70188:CDS | 65.0% | |
| CAGCAACACAACACGGCCGC+AGG | - | chr4.1:8049920-8049939 | MS.gene70188:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 8048582 | 8050663 | 8048582 | ID=MS.gene70188 |
| chr4.1 | mRNA | 8048582 | 8050663 | 8048582 | ID=MS.gene70188.t1;Parent=MS.gene70188 |
| chr4.1 | exon | 8048582 | 8050663 | 8048582 | ID=MS.gene70188.t1.exon1;Parent=MS.gene70188.t1 |
| chr4.1 | CDS | 8048582 | 8050663 | 8048582 | ID=cds.MS.gene70188.t1;Parent=MS.gene70188.t1 |
| Gene Sequence |
| Protein sequence |
