Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49697.t1 | RHN43144.1 | 82.2 | 697 | 92 | 5 | 1 | 670 | 1 | 692 | 1.60E-279 | 971.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49697.t1 | Q8RWD6 | 39.5 | 684 | 265 | 13 | 9 | 668 | 14 | 572 | 1.4e-130 | 468.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49697.t1 | A0A396GUI7 | 82.2 | 697 | 92 | 5 | 1 | 670 | 1 | 692 | 1.1e-279 | 971.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49697 | MS.gene40916 | PPI |
| MS.gene49697 | MS.gene06374 | PPI |
| MS.gene030587 | MS.gene49697 | PPI |
| MS.gene030591 | MS.gene49697 | PPI |
| MS.gene049252 | MS.gene49697 | PPI |
| MS.gene49697 | MS.gene70191 | PPI |
| MS.gene06374 | MS.gene49697 | PPI |
| MS.gene40916 | MS.gene49697 | PPI |
| MS.gene49700 | MS.gene49697 | PPI |
| MS.gene013291 | MS.gene49697 | PPI |
| MS.gene70191 | MS.gene49697 | PPI |
| MS.gene49697 | MS.gene013291 | PPI |
| MS.gene70188 | MS.gene49697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49697.t1 | MTR_8g094190 | 77.943 | 671 | 105 | 6 | 1 | 670 | 1 | 629 | 0.0 | 1054 |
| MS.gene49697.t1 | MTR_8g094150 | 79.837 | 615 | 65 | 6 | 60 | 670 | 7 | 566 | 0.0 | 939 |
| MS.gene49697.t1 | MTR_3g096670 | 53.209 | 374 | 121 | 8 | 10 | 343 | 3 | 362 | 1.94e-117 | 364 |
| MS.gene49697.t1 | MTR_3g096670 | 62.105 | 285 | 84 | 4 | 394 | 669 | 331 | 600 | 3.47e-114 | 356 |
| MS.gene49697.t1 | MTR_3g096670 | 53.209 | 374 | 121 | 8 | 10 | 343 | 3 | 362 | 3.80e-117 | 364 |
| MS.gene49697.t1 | MTR_3g096670 | 62.105 | 285 | 84 | 4 | 394 | 669 | 331 | 600 | 4.48e-114 | 356 |
| MS.gene49697.t1 | MTR_0095s0110 | 85.083 | 181 | 27 | 0 | 490 | 670 | 1 | 181 | 2.70e-107 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49697.t1 | AT5G39450 | 42.045 | 352 | 153 | 10 | 9 | 337 | 14 | 337 | 1.02e-77 | 259 |
| MS.gene49697.t1 | AT5G39450 | 53.070 | 228 | 101 | 2 | 444 | 669 | 350 | 573 | 7.32e-77 | 257 |
| MS.gene49697.t1 | AT5G39490 | 45.860 | 314 | 133 | 8 | 9 | 304 | 6 | 300 | 8.51e-75 | 251 |
| MS.gene49697.t1 | AT5G39490 | 46.552 | 232 | 118 | 2 | 441 | 670 | 330 | 557 | 6.97e-65 | 224 |
| MS.gene49697.t1 | AT5G39460 | 43.266 | 349 | 151 | 10 | 9 | 337 | 7 | 328 | 2.17e-73 | 247 |
| MS.gene49697.t1 | AT5G39460 | 50.000 | 230 | 102 | 5 | 444 | 669 | 341 | 561 | 2.46e-65 | 226 |
| MS.gene49697.t1 | AT5G39480 | 49.438 | 267 | 110 | 6 | 9 | 262 | 7 | 261 | 2.88e-73 | 247 |
| MS.gene49697.t1 | AT5G39480 | 47.638 | 254 | 117 | 4 | 428 | 669 | 309 | 558 | 5.36e-68 | 233 |
| MS.gene49697.t1 | AT5G39470 | 37.363 | 91 | 32 | 1 | 14 | 104 | 96 | 161 | 2.17e-13 | 69.3 |
Find 123 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAGGAGGTTGTTTCTTT+AGG | 0.164715 | 4.4:-8132757 | MS.gene49697:CDS |
| TTAAACCATTGCTTGGTATT+TGG | 0.167263 | 4.4:-8132858 | MS.gene49697:CDS |
| CATTTGCATAATTAGGATTT+AGG | 0.187285 | 4.4:+8132452 | None:intergenic |
| ATCAAGTGTATGCTGGTTTA+TGG | 0.206878 | 4.4:-8131631 | MS.gene49697:CDS |
| CTCAGGAGGTTGTTTCTTTA+GGG | 0.209032 | 4.4:-8132756 | MS.gene49697:CDS |
| AATGGTTCATTTGCATAATT+AGG | 0.214034 | 4.4:+8132445 | None:intergenic |
| TGAAAACTTCTCTGGGAATT+AGG | 0.230889 | 4.4:+8133040 | None:intergenic |
| GGTTTATGGGGCGGTACTTT+TGG | 0.253329 | 4.4:-8131617 | MS.gene49697:CDS |
| TAAACCATTGCTTGGTATTT+GGG | 0.255038 | 4.4:-8132857 | MS.gene49697:CDS |
| CAGCTATTGTGTTGCGTTGC+TGG | 0.268648 | 4.4:+8131999 | None:intergenic |
| CTAAAACCCAACTTGCTAAA+AGG | 0.268952 | 4.4:+8132532 | None:intergenic |
| GTACTAACCAAGTTAGATTA+AGG | 0.276509 | 4.4:-8132477 | MS.gene49697:CDS |
| CATTTCCTTGGAACACTGAT+AGG | 0.279609 | 4.4:-8131406 | MS.gene49697:CDS |
| TCCCTCTTTGTGTTTCAAAA+TGG | 0.295164 | 4.4:-8131293 | MS.gene49697:CDS |
| GCATACACTTGATCTTCTTT+AGG | 0.298816 | 4.4:+8131641 | None:intergenic |
| TTGCATCTTCTGAGAAAGTT+TGG | 0.305192 | 4.4:-8132984 | MS.gene49697:CDS |
| TTCTCAAAACAAGCCTAAAA+AGG | 0.314794 | 4.4:-8131576 | MS.gene49697:CDS |
| TCCAAGATTGTTCTATCCTT+TGG | 0.318701 | 4.4:-8132732 | MS.gene49697:CDS |
| CTTGCAAGTTAAGTCTTTGC+AGG | 0.324795 | 4.4:+8131228 | None:intergenic |
| ACTAAGATTGAAAACTTCTC+TGG | 0.349744 | 4.4:+8133032 | None:intergenic |
| CGAAGATCTAGTACAATTGA+TGG | 0.375639 | 4.4:-8132040 | MS.gene49697:CDS |
| TAAACAAGATTACCAAGTTC+AGG | 0.378819 | 4.4:+8132823 | None:intergenic |
| TCAAGTGTATGCTGGTTTAT+GGG | 0.380553 | 4.4:-8131630 | MS.gene49697:CDS |
| TGTCAATATTGGTAAGAAAC+GGG | 0.408489 | 4.4:-8131933 | MS.gene49697:CDS |
| AACCATTCTTTCCTAGATCA+AGG | 0.416781 | 4.4:-8132429 | MS.gene49697:CDS |
| GGACTTGAATCAAAAGGATA+AGG | 0.421533 | 4.4:+8133108 | None:intergenic |
| ACCAAAGGATAGAACAATCT+TGG | 0.422539 | 4.4:+8132731 | None:intergenic |
| AAATATCCAGGATCAAAATC+TGG | 0.428229 | 4.4:-8131317 | MS.gene49697:CDS |
| ATAAACATTGGCGAACCATT+AGG | 0.435208 | 4.4:+8131458 | None:intergenic |
| CTATCAGTGTTCCAAGGAAA+TGG | 0.436146 | 4.4:+8131407 | None:intergenic |
| ACATAGTCATCCCTTGATCT+AGG | 0.436786 | 4.4:+8132418 | None:intergenic |
| CGCTACGCCTTGCATCCTAA+TGG | 0.437385 | 4.4:-8131473 | MS.gene49697:CDS |
| CTTACTATTGCTCTCTTACT+CGG | 0.439508 | 4.4:-8131546 | MS.gene49697:CDS |
| ATGTGTTTGCCACAGTTTCA+AGG | 0.439794 | 4.4:-8133065 | MS.gene49697:CDS |
| GATGGCAGTGTTGTCAATAT+TGG | 0.444794 | 4.4:-8131944 | MS.gene49697:CDS |
| ATGGTGTTATTGCCTTTGTT+TGG | 0.445858 | 4.4:-8131274 | MS.gene49697:CDS |
| GAAGGTATTGCAGGTGGCTA+TGG | 0.446172 | 4.4:-8131344 | MS.gene49697:CDS |
| TCTCATTGGAACAAAAGTAT+TGG | 0.449339 | 4.4:-8131504 | MS.gene49697:CDS |
| CTTCATCTGAACCATTTCCT+TGG | 0.454452 | 4.4:-8131418 | MS.gene49697:CDS |
| TTTGTGGGAGAAGGTATTGC+AGG | 0.455387 | 4.4:-8131353 | MS.gene49697:CDS |
| TTGTCAATATTGGTAAGAAA+CGG | 0.455965 | 4.4:-8131934 | MS.gene49697:CDS |
| CAACACAGCCGCTGGAGCAA+GGG | 0.457792 | 4.4:-8132068 | MS.gene49697:CDS |
| GTCCCTAGTTCCTGCGGTTG+TGG | 0.462275 | 4.4:+8131844 | None:intergenic |
| GGGGTAGATTGTGTTTATCA+TGG | 0.463874 | 4.4:-8132637 | MS.gene49697:CDS |
| AATCTTGTTTATGTAATGCC+AGG | 0.464568 | 4.4:-8132811 | MS.gene49697:CDS |
| TGTTGCTTGAGGTTGAATCT+AGG | 0.464870 | 4.4:-8132579 | MS.gene49697:CDS |
| TTAGGAACCTTAATCTAACT+TGG | 0.467552 | 4.4:+8132470 | None:intergenic |
| GCTTGTAAACACATTTAAGT+AGG | 0.471199 | 4.4:+8131136 | None:intergenic |
| CAAGGAAATGGTTCAGATGA+AGG | 0.471399 | 4.4:+8131419 | None:intergenic |
| GTGTGACTATCCTTATTGAT+TGG | 0.471986 | 4.4:+8132202 | None:intergenic |
| ACACCACAACCGCAGGAACT+AGG | 0.477831 | 4.4:-8131847 | MS.gene49697:CDS |
| CAGCAACGCAACACAATAGC+TGG | 0.480588 | 4.4:-8131998 | MS.gene49697:CDS |
| GGCTATGGATTCAAATATCC+AGG | 0.481720 | 4.4:-8131329 | MS.gene49697:CDS |
| ACTGTGGCAAACACATCATC+TGG | 0.489039 | 4.4:+8133072 | None:intergenic |
| GATTTGCATTCTTTATCTCA+TGG | 0.489665 | 4.4:+8131798 | None:intergenic |
| AGGGGAAGAAGTTGGCTCAA+TGG | 0.493139 | 4.4:-8132284 | MS.gene49697:CDS |
| AAGGGACAACAACTTCTCAT+TGG | 0.494162 | 4.4:-8131518 | MS.gene49697:CDS |
| TTGAGTGTTAAACCATTGCT+TGG | 0.500161 | 4.4:-8132865 | MS.gene49697:CDS |
| TCCCTTGATCTAGGAAAGAA+TGG | 0.503136 | 4.4:+8132427 | None:intergenic |
| GCTCTCTTACTCGGAGTCAA+AGG | 0.508292 | 4.4:-8131537 | MS.gene49697:CDS |
| TTGTCAATGGGAGGCAGAGA+AGG | 0.513421 | 4.4:+8131179 | None:intergenic |
| GTGTTCGATATTCATCGATA+AGG | 0.516949 | 4.4:+8131379 | None:intergenic |
| TTGCAATTTATTGTTGCTTG+AGG | 0.520647 | 4.4:-8132590 | MS.gene49697:CDS |
| CTAAGATTGAAAACTTCTCT+GGG | 0.523415 | 4.4:+8133033 | None:intergenic |
| CTCTCTTACTCGGAGTCAAA+GGG | 0.526823 | 4.4:-8131536 | MS.gene49697:CDS |
| GTTCAACAGAATCCTGAACT+TGG | 0.526928 | 4.4:-8132835 | MS.gene49697:CDS |
| GACTTGAATCAAAAGGATAA+GGG | 0.526944 | 4.4:+8133109 | None:intergenic |
| ATTTCCTTGGAACACTGATA+GGG | 0.532867 | 4.4:-8131405 | MS.gene49697:CDS |
| GAAATTGTTTGCGATTTCGA+TGG | 0.532974 | 4.4:-8132697 | MS.gene49697:CDS |
| GAAAATAAAGAAAATTCTCA+AGG | 0.533455 | 4.4:-8132304 | MS.gene49697:CDS |
| ATAAGCGGACTTGAATCAAA+AGG | 0.534650 | 4.4:+8133102 | None:intergenic |
| CTTCATGGAAGGGAAGAAGA+GGG | 0.535516 | 4.4:-8132658 | MS.gene49697:CDS |
| ACAACACAGCCGCTGGAGCA+AGG | 0.536255 | 4.4:-8132069 | MS.gene49697:CDS |
| ATGGCTTGAACTAATCCCTA+TGG | 0.536846 | 4.4:+8131817 | None:intergenic |
| CACTCAAAGACCTTGTTGAG+TGG | 0.537136 | 4.4:-8132930 | MS.gene49697:CDS |
| CATCAACACAACACAGCCGC+TGG | 0.541070 | 4.4:-8132076 | MS.gene49697:CDS |
| AATTCTCAAGGGGAAGAAGT+TGG | 0.541165 | 4.4:-8132292 | MS.gene49697:CDS |
| AACACAGCCGCTGGAGCAAG+GGG | 0.552236 | 4.4:-8132067 | MS.gene49697:CDS |
| TGTTATTGCCTTTGTTTGGA+AGG | 0.552749 | 4.4:-8131270 | MS.gene49697:CDS |
| CACCACAACCGCAGGAACTA+GGG | 0.552998 | 4.4:-8131846 | MS.gene49697:CDS |
| TTGATATTCACTATAAACAT+TGG | 0.553523 | 4.4:+8131446 | None:intergenic |
| GGAACTAGGGACAATGCCAT+AGG | 0.554489 | 4.4:-8131833 | MS.gene49697:CDS |
| AAAGAAGATCAAGTGTATGC+TGG | 0.555008 | 4.4:-8131638 | MS.gene49697:CDS |
| TCTTGATTCCTTCCAAACAA+AGG | 0.557133 | 4.4:+8131262 | None:intergenic |
| AATATTGACAACACTGCCAT+CGG | 0.558425 | 4.4:+8131946 | None:intergenic |
| CACACTCTCTCCACTCAACA+AGG | 0.560982 | 4.4:+8132920 | None:intergenic |
| TGACTATCCTTATTGATTGG+AGG | 0.569707 | 4.4:+8132205 | None:intergenic |
| CAAGTGTATGCTGGTTTATG+GGG | 0.571442 | 4.4:-8131629 | MS.gene49697:CDS |
| ACCATTCTTTCCTAGATCAA+GGG | 0.573435 | 4.4:-8132428 | MS.gene49697:CDS |
| GAATCAAAAGGATAAGGGTA+GGG | 0.578030 | 4.4:+8133114 | None:intergenic |
| AGCGTGTCGAATAATACCTC+AGG | 0.579720 | 4.4:-8132773 | MS.gene49697:CDS |
| AAAATAAAGAAAATTCTCAA+GGG | 0.581227 | 4.4:-8132303 | MS.gene49697:CDS |
| TGAATCAAAAGGATAAGGGT+AGG | 0.584514 | 4.4:+8133113 | None:intergenic |
| TCTTCATGGAAGGGAAGAAG+AGG | 0.584944 | 4.4:-8132659 | MS.gene49697:CDS |
| TTGCAAGTTAAGTCTTTGCA+GGG | 0.588072 | 4.4:+8131229 | None:intergenic |
| GGCATTGTCCCTAGTTCCTG+CGG | 0.588627 | 4.4:+8131838 | None:intergenic |
| TCTTCTTTAGGAACTTGCAA+AGG | 0.590093 | 4.4:+8131653 | None:intergenic |
| TCGATGGCCCCTTGCTCCAG+CGG | 0.591032 | 4.4:+8132060 | None:intergenic |
| CAGCAACACACCACAACCGC+AGG | 0.591593 | 4.4:-8131854 | MS.gene49697:CDS |
| ATTGGAACAAAAGTATTGGA+AGG | 0.593692 | 4.4:-8131500 | MS.gene49697:CDS |
| TGGCGAACCATTAGGATGCA+AGG | 0.595930 | 4.4:+8131466 | None:intergenic |
| GTGGGAGAAGGTATTGCAGG+TGG | 0.596666 | 4.4:-8131350 | MS.gene49697:CDS |
| CAATTGAACTAGATCTTCCA+AGG | 0.604899 | 4.4:+8132122 | None:intergenic |
| CAATTGTACTAGATCTTCGA+TGG | 0.606447 | 4.4:+8132044 | None:intergenic |
| TCATGGAAGGGAAGAAGAGG+GGG | 0.607393 | 4.4:-8132656 | MS.gene49697:CDS |
| GAACTAGGGACAATGCCATA+GGG | 0.609628 | 4.4:-8131832 | MS.gene49697:CDS |
| GCTACAACAGAAACAAAACC+TGG | 0.618777 | 4.4:+8132793 | None:intergenic |
| TTCATGGAAGGGAAGAAGAG+GGG | 0.619678 | 4.4:-8132657 | MS.gene49697:CDS |
| TGAACCCAAATACCAAGCAA+TGG | 0.622950 | 4.4:+8132853 | None:intergenic |
| CCTAAAGAAACAACCTCCTG+AGG | 0.625560 | 4.4:+8132757 | None:intergenic |
| TTTCAAACACAGGTGACCAA+AGG | 0.627505 | 4.4:+8132716 | None:intergenic |
| GTGTATGCTGGTTTATGGGG+CGG | 0.628467 | 4.4:-8131626 | MS.gene49697:CDS |
| ATCTAGGAAGCAAGATAGTG+AGG | 0.629097 | 4.4:-8132563 | MS.gene49697:CDS |
| CGATTGTACTAGATCTTCGA+TGG | 0.634797 | 4.4:+8131900 | None:intergenic |
| CAAAGATCTAGTACAGCCGA+TGG | 0.640877 | 4.4:-8131962 | MS.gene49697:CDS |
| TCGCAAACAATTTCAAACAC+AGG | 0.643858 | 4.4:+8132706 | None:intergenic |
| GTCAATATTGGTAAGAAACG+GGG | 0.644701 | 4.4:-8131932 | MS.gene49697:CDS |
| GAGTCCCTATCAGTGTTCCA+AGG | 0.646047 | 4.4:+8131401 | None:intergenic |
| TCATCTGGTAGATGAATAAG+CGG | 0.658669 | 4.4:+8133087 | None:intergenic |
| AAATAAAGAAAATTCTCAAG+GGG | 0.659702 | 4.4:-8132302 | MS.gene49697:CDS |
| GTGTCGAATAATACCTCAGG+AGG | 0.669560 | 4.4:-8132770 | MS.gene49697:CDS |
| AATTAGGTACCTTGAAACTG+TGG | 0.670120 | 4.4:+8133056 | None:intergenic |
| AATGGATTTAGAGATAGATG+AGG | 0.691570 | 4.4:-8132266 | MS.gene49697:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAGAAAATTCTCAA+GGG | - | chr4.4:8131953-8131972 | MS.gene49697:CDS | 15.0% |
| !! | AAATATGAAAAATTGTCAAT+GGG | + | chr4.4:8133092-8133111 | None:intergenic | 15.0% |
| !! | AAATAAAGAAAATTCTCAAG+GGG | - | chr4.4:8131954-8131973 | MS.gene49697:CDS | 20.0% |
| !! | CAAATATGAAAAATTGTCAA+TGG | + | chr4.4:8133093-8133112 | None:intergenic | 20.0% |
| !! | GAAAATAAAGAAAATTCTCA+AGG | - | chr4.4:8131952-8131971 | MS.gene49697:CDS | 20.0% |
| !! | TTGATATTCACTATAAACAT+TGG | + | chr4.4:8132813-8132832 | None:intergenic | 20.0% |
| !!! | AACCAATTTTTGTTCATATT+CGG | + | chr4.4:8132567-8132586 | None:intergenic | 20.0% |
| !!! | TCTAATATGTTTTTTCTTCA+TGG | - | chr4.4:8131583-8131602 | MS.gene49697:CDS | 20.0% |
| !!! | TGTTAATTTTCAGAAAGATT+TGG | - | chr4.4:8131858-8131877 | MS.gene49697:CDS | 20.0% |
| ! | AATGGTTCATTTGCATAATT+AGG | + | chr4.4:8131814-8131833 | None:intergenic | 25.0% |
| ! | CATTTGCATAATTAGGATTT+AGG | + | chr4.4:8131807-8131826 | None:intergenic | 25.0% |
| ! | TTGTCAATATTGGTAAGAAA+CGG | - | chr4.4:8132322-8132341 | MS.gene49697:CDS | 25.0% |
| !!! | ATATGTTTTTTCTTCATGGA+AGG | - | chr4.4:8131587-8131606 | MS.gene49697:CDS | 25.0% |
| !!! | TATGTTTTTTCTTCATGGAA+GGG | - | chr4.4:8131588-8131607 | MS.gene49697:CDS | 25.0% |
| AAATATCCAGGATCAAAATC+TGG | - | chr4.4:8132939-8132958 | MS.gene49697:CDS | 30.0% | |
| ACTAAGATTGAAAACTTCTC+TGG | + | chr4.4:8131227-8131246 | None:intergenic | 30.0% | |
| CTAAGATTGAAAACTTCTCT+GGG | + | chr4.4:8131226-8131245 | None:intergenic | 30.0% | |
| GACTTGAATCAAAAGGATAA+GGG | + | chr4.4:8131150-8131169 | None:intergenic | 30.0% | |
| GATTTGCATTCTTTATCTCA+TGG | + | chr4.4:8132461-8132480 | None:intergenic | 30.0% | |
| GCTTGTAAACACATTTAAGT+AGG | + | chr4.4:8133123-8133142 | None:intergenic | 30.0% | |
| GGGATAGAAAAAAATTGCTT+CGG | - | chr4.4:8131746-8131765 | MS.gene49697:CDS | 30.0% | |
| GTACTAACCAAGTTAGATTA+AGG | - | chr4.4:8131779-8131798 | MS.gene49697:CDS | 30.0% | |
| TAAACAAGATTACCAAGTTC+AGG | + | chr4.4:8131436-8131455 | None:intergenic | 30.0% | |
| TAAACCATTGCTTGGTATTT+GGG | - | chr4.4:8131399-8131418 | MS.gene49697:CDS | 30.0% | |
| TATGAAAAATTGTCAATGGG+AGG | + | chr4.4:8133089-8133108 | None:intergenic | 30.0% | |
| TGTCAATATTGGTAAGAAAC+GGG | - | chr4.4:8132323-8132342 | MS.gene49697:CDS | 30.0% | |
| TTAAACCATTGCTTGGTATT+TGG | - | chr4.4:8131398-8131417 | MS.gene49697:CDS | 30.0% | |
| TTAGGAACCTTAATCTAACT+TGG | + | chr4.4:8131789-8131808 | None:intergenic | 30.0% | |
| TTCTCAAAACAAGCCTAAAA+AGG | - | chr4.4:8132680-8132699 | MS.gene49697:CDS | 30.0% | |
| ! | AATAGTTCCTTTTAGCAAGT+TGG | - | chr4.4:8131717-8131736 | MS.gene49697:CDS | 30.0% |
| ! | AATCTTGTTTATGTAATGCC+AGG | - | chr4.4:8131445-8131464 | MS.gene49697:CDS | 30.0% |
| ! | AATGGATTTAGAGATAGATG+AGG | - | chr4.4:8131990-8132009 | MS.gene49697:CDS | 30.0% |
| ! | AGTAAGAATAGAGCCTTTTT+AGG | + | chr4.4:8132696-8132715 | None:intergenic | 30.0% |
| ! | ATAGTTCCTTTTAGCAAGTT+GGG | - | chr4.4:8131718-8131737 | MS.gene49697:CDS | 30.0% |
| ! | GCAAATTTATCATCTTTTCG+AGG | - | chr4.4:8132537-8132556 | MS.gene49697:CDS | 30.0% |
| ! | TCTCATTGGAACAAAAGTAT+TGG | - | chr4.4:8132752-8132771 | MS.gene49697:CDS | 30.0% |
| ! | TTGCAATTTATTGTTGCTTG+AGG | - | chr4.4:8131666-8131685 | MS.gene49697:CDS | 30.0% |
| !! | AAAGTCTAGGTGGTTATTTT+TGG | - | chr4.4:8132094-8132113 | MS.gene49697:CDS | 30.0% |
| !! | ATTGGAACAAAAGTATTGGA+AGG | - | chr4.4:8132756-8132775 | MS.gene49697:CDS | 30.0% |
| !! | ATTTATCATCTTTTCGAGGT+TGG | - | chr4.4:8132541-8132560 | MS.gene49697:CDS | 30.0% |
| !! | TTTTAGCAAGTTGGGTTTTA+GGG | - | chr4.4:8131726-8131745 | MS.gene49697:CDS | 30.0% |
| !! | TTTTGAGAAGGTTTTTCATG+AGG | + | chr4.4:8132669-8132688 | None:intergenic | 30.0% |
| !!! | AAGTCTAGGTGGTTATTTTT+GGG | - | chr4.4:8132095-8132114 | MS.gene49697:CDS | 30.0% |
| !!! | ACCATTTTGAAACACAAAGA+GGG | + | chr4.4:8132967-8132986 | None:intergenic | 30.0% |
| !!! | GGTAGTTTTAAACATATCCT+TGG | - | chr4.4:8132117-8132136 | MS.gene49697:CDS | 30.0% |
| !!! | TTGCAAGAAGTTTTGAAGAA+AGG | - | chr4.4:8133044-8133063 | MS.gene49697:CDS | 30.0% |
| !!! | TTTTTAGGCTTGTTTTGAGA+AGG | + | chr4.4:8132681-8132700 | None:intergenic | 30.0% |
| AAAGAAGATCAAGTGTATGC+TGG | - | chr4.4:8132618-8132637 | MS.gene49697:CDS | 35.0% | |
| AACCATTCTTTCCTAGATCA+AGG | - | chr4.4:8131827-8131846 | MS.gene49697:CDS | 35.0% | |
| AATATTGACAACACTGCCAT+CGG | + | chr4.4:8132235-8132254 | None:intergenic | 35.0% | |
| AATTAGGTACCTTGAAACTG+TGG | + | chr4.4:8131203-8131222 | None:intergenic | 35.0% | |
| ACCAAAGGATAGAACAATCT+TGG | + | chr4.4:8131528-8131547 | None:intergenic | 35.0% | |
| ACCATTCTTTCCTAGATCAA+GGG | - | chr4.4:8131828-8131847 | MS.gene49697:CDS | 35.0% | |
| ATAAACATTGGCGAACCATT+AGG | + | chr4.4:8132801-8132820 | None:intergenic | 35.0% | |
| ATCAAGAGAAAAAGTCTAGG+TGG | - | chr4.4:8132084-8132103 | MS.gene49697:CDS | 35.0% | |
| ATTTCCTTGGAACACTGATA+GGG | - | chr4.4:8132851-8132870 | MS.gene49697:CDS | 35.0% | |
| CAATTGAACTAGATCTTCCA+AGG | + | chr4.4:8132137-8132156 | None:intergenic | 35.0% | |
| CAATTGTACTAGATCTTCGA+TGG | + | chr4.4:8132215-8132234 | None:intergenic | 35.0% | |
| CGAAGATCTAGTACAATTGA+TGG | - | chr4.4:8132216-8132235 | MS.gene49697:CDS | 35.0% | |
| CTTACTATTGCTCTCTTACT+CGG | - | chr4.4:8132710-8132729 | MS.gene49697:CDS | 35.0% | |
| GAAATTGTTTGCGATTTCGA+TGG | - | chr4.4:8131559-8131578 | MS.gene49697:CDS | 35.0% | |
| GAATCAAAAGGATAAGGGTA+GGG | + | chr4.4:8131145-8131164 | None:intergenic | 35.0% | |
| GCATACACTTGATCTTCTTT+AGG | + | chr4.4:8132618-8132637 | None:intergenic | 35.0% | |
| GGACTTGAATCAAAAGGATA+AGG | + | chr4.4:8131151-8131170 | None:intergenic | 35.0% | |
| GGCCGAATATGAACAAAAAT+TGG | - | chr4.4:8132562-8132581 | MS.gene49697:CDS | 35.0% | |
| GTCAATATTGGTAAGAAACG+GGG | - | chr4.4:8132324-8132343 | MS.gene49697:CDS | 35.0% | |
| GTGTGACTATCCTTATTGAT+TGG | + | chr4.4:8132057-8132076 | None:intergenic | 35.0% | |
| GTGTTCGATATTCATCGATA+AGG | + | chr4.4:8132880-8132899 | None:intergenic | 35.0% | |
| TCATCTGGTAGATGAATAAG+CGG | + | chr4.4:8131172-8131191 | None:intergenic | 35.0% | |
| TCCAAGATTGTTCTATCCTT+TGG | - | chr4.4:8131524-8131543 | MS.gene49697:CDS | 35.0% | |
| TCCCTCTTTGTGTTTCAAAA+TGG | - | chr4.4:8132963-8132982 | MS.gene49697:CDS | 35.0% | |
| TCGCAAACAATTTCAAACAC+AGG | + | chr4.4:8131553-8131572 | None:intergenic | 35.0% | |
| TCTTGATTCCTTCCAAACAA+AGG | + | chr4.4:8132997-8133016 | None:intergenic | 35.0% | |
| TGAATCAAAAGGATAAGGGT+AGG | + | chr4.4:8131146-8131165 | None:intergenic | 35.0% | |
| TGCATCAAGAGAAAAAGTCT+AGG | - | chr4.4:8132081-8132100 | MS.gene49697:CDS | 35.0% | |
| TTGAGTGTTAAACCATTGCT+TGG | - | chr4.4:8131391-8131410 | MS.gene49697:CDS | 35.0% | |
| TTGCAAGTTAAGTCTTTGCA+GGG | + | chr4.4:8133030-8133049 | None:intergenic | 35.0% | |
| ! | AATATCGAACACGCTTTTGT+GGG | - | chr4.4:8132888-8132907 | MS.gene49697:CDS | 35.0% |
| ! | ATAAGCGGACTTGAATCAAA+AGG | + | chr4.4:8131157-8131176 | None:intergenic | 35.0% |
| ! | TCTTCTTTAGGAACTTGCAA+AGG | + | chr4.4:8132606-8132625 | None:intergenic | 35.0% |
| ! | TGAAAACTTCTCTGGGAATT+AGG | + | chr4.4:8131219-8131238 | None:intergenic | 35.0% |
| ! | TGACTATCCTTATTGATTGG+AGG | + | chr4.4:8132054-8132073 | None:intergenic | 35.0% |
| ! | TGTTATTGCCTTTGTTTGGA+AGG | - | chr4.4:8132986-8133005 | MS.gene49697:CDS | 35.0% |
| ! | TTGCATCTTCTGAGAAAGTT+TGG | - | chr4.4:8131272-8131291 | MS.gene49697:CDS | 35.0% |
| !! | ATCAAGTGTATGCTGGTTTA+TGG | - | chr4.4:8132625-8132644 | MS.gene49697:CDS | 35.0% |
| !! | ATGGTGTTATTGCCTTTGTT+TGG | - | chr4.4:8132982-8133001 | MS.gene49697:CDS | 35.0% |
| !! | CTAAAACCCAACTTGCTAAA+AGG | + | chr4.4:8131727-8131746 | None:intergenic | 35.0% |
| !! | CTTTTAGCAAGTTGGGTTTT+AGG | - | chr4.4:8131725-8131744 | MS.gene49697:CDS | 35.0% |
| !! | TCAAGTGTATGCTGGTTTAT+GGG | - | chr4.4:8132626-8132645 | MS.gene49697:CDS | 35.0% |
| !!! | AGTCTAGGTGGTTATTTTTG+GGG | - | chr4.4:8132096-8132115 | MS.gene49697:CDS | 35.0% |
| !!! | CACCATTTTGAAACACAAAG+AGG | + | chr4.4:8132968-8132987 | None:intergenic | 35.0% |
| AAGGGACAACAACTTCTCAT+TGG | - | chr4.4:8132738-8132757 | MS.gene49697:CDS | 40.0% | |
| AATTCTCAAGGGGAAGAAGT+TGG | - | chr4.4:8131964-8131983 | MS.gene49697:CDS | 40.0% | |
| ACATAGTCATCCCTTGATCT+AGG | + | chr4.4:8131841-8131860 | None:intergenic | 40.0% | |
| ATCTAGGAAGCAAGATAGTG+AGG | - | chr4.4:8131693-8131712 | MS.gene49697:CDS | 40.0% | |
| ATGGCTTGAACTAATCCCTA+TGG | + | chr4.4:8132442-8132461 | None:intergenic | 40.0% | |
| ATGTGTTTGCCACAGTTTCA+AGG | - | chr4.4:8131191-8131210 | MS.gene49697:CDS | 40.0% | |
| CAAGGAAATGGTTCAGATGA+AGG | + | chr4.4:8132840-8132859 | None:intergenic | 40.0% | |
| CATTTCCTTGGAACACTGAT+AGG | - | chr4.4:8132850-8132869 | MS.gene49697:CDS | 40.0% | |
| CGATTGTACTAGATCTTCGA+TGG | + | chr4.4:8132359-8132378 | None:intergenic | 40.0% | |
| CTATCAGTGTTCCAAGGAAA+TGG | + | chr4.4:8132852-8132871 | None:intergenic | 40.0% | |
| CTTCATCTGAACCATTTCCT+TGG | - | chr4.4:8132838-8132857 | MS.gene49697:CDS | 40.0% | |
| CTTGCAAGTTAAGTCTTTGC+AGG | + | chr4.4:8133031-8133050 | None:intergenic | 40.0% | |
| GATGGCAGTGTTGTCAATAT+TGG | - | chr4.4:8132234-8132253 | MS.gene49697:CDS | 40.0% | |
| GCTACAACAGAAACAAAACC+TGG | + | chr4.4:8131466-8131485 | None:intergenic | 40.0% | |
| GGCTATGGATTCAAATATCC+AGG | - | chr4.4:8132927-8132946 | MS.gene49697:CDS | 40.0% | |
| GGGGTAGATTGTGTTTATCA+TGG | - | chr4.4:8131619-8131638 | MS.gene49697:CDS | 40.0% | |
| GTTCAACAGAATCCTGAACT+TGG | - | chr4.4:8131421-8131440 | MS.gene49697:CDS | 40.0% | |
| TCCCTTGATCTAGGAAAGAA+TGG | + | chr4.4:8131832-8131851 | None:intergenic | 40.0% | |
| TGAACCCAAATACCAAGCAA+TGG | + | chr4.4:8131406-8131425 | None:intergenic | 40.0% | |
| TTTCAAACACAGGTGACCAA+AGG | + | chr4.4:8131543-8131562 | None:intergenic | 40.0% | |
| ! | CGCTTTTCCTCCAATCAATA+AGG | - | chr4.4:8132044-8132063 | MS.gene49697:CDS | 40.0% |
| ! | GAATATCGAACACGCTTTTG+TGG | - | chr4.4:8132887-8132906 | MS.gene49697:CDS | 40.0% |
| ! | TGTTGCTTGAGGTTGAATCT+AGG | - | chr4.4:8131677-8131696 | MS.gene49697:CDS | 40.0% |
| !! | CAAGTGTATGCTGGTTTATG+GGG | - | chr4.4:8132627-8132646 | MS.gene49697:CDS | 40.0% |
| !! | CTCAGGAGGTTGTTTCTTTA+GGG | - | chr4.4:8131500-8131519 | MS.gene49697:CDS | 40.0% |
| ACTGTGGCAAACACATCATC+TGG | + | chr4.4:8131187-8131206 | None:intergenic | 45.0% | |
| AGCGTGTCGAATAATACCTC+AGG | - | chr4.4:8131483-8131502 | MS.gene49697:CDS | 45.0% | |
| CAAAGATCTAGTACAGCCGA+TGG | - | chr4.4:8132294-8132313 | MS.gene49697:CDS | 45.0% | |
| CACTCAAAGACCTTGTTGAG+TGG | - | chr4.4:8131326-8131345 | MS.gene49697:CDS | 45.0% | |
| CCTAAAGAAACAACCTCCTG+AGG | + | chr4.4:8131502-8131521 | None:intergenic | 45.0% | |
| CTCTCTTACTCGGAGTCAAA+GGG | - | chr4.4:8132720-8132739 | MS.gene49697:CDS | 45.0% | |
| CTTCATGGAAGGGAAGAAGA+GGG | - | chr4.4:8131598-8131617 | MS.gene49697:CDS | 45.0% | |
| GAACTAGGGACAATGCCATA+GGG | - | chr4.4:8132424-8132443 | MS.gene49697:CDS | 45.0% | |
| GTGTCGAATAATACCTCAGG+AGG | - | chr4.4:8131486-8131505 | MS.gene49697:CDS | 45.0% | |
| TCTTCATGGAAGGGAAGAAG+AGG | - | chr4.4:8131597-8131616 | MS.gene49697:CDS | 45.0% | |
| TTCATGGAAGGGAAGAAGAG+GGG | - | chr4.4:8131599-8131618 | MS.gene49697:CDS | 45.0% | |
| !! | AGGGAACCAGATTTTGATCC+TGG | + | chr4.4:8132948-8132967 | None:intergenic | 45.0% |
| !! | CCTCAGGAGGTTGTTTCTTT+AGG | - | chr4.4:8131499-8131518 | MS.gene49697:CDS | 45.0% |
| !! | TTTGTGGGAGAAGGTATTGC+AGG | - | chr4.4:8132903-8132922 | MS.gene49697:CDS | 45.0% |
| CACACTCTCTCCACTCAACA+AGG | + | chr4.4:8131339-8131358 | None:intergenic | 50.0% | |
| CAGCAACGCAACACAATAGC+TGG | - | chr4.4:8132258-8132277 | MS.gene49697:CDS | 50.0% | |
| CAGCTATTGTGTTGCGTTGC+TGG | + | chr4.4:8132260-8132279 | None:intergenic | 50.0% | |
| GAGTCCCTATCAGTGTTCCA+AGG | + | chr4.4:8132858-8132877 | None:intergenic | 50.0% | |
| GCTCTCTTACTCGGAGTCAA+AGG | - | chr4.4:8132719-8132738 | MS.gene49697:CDS | 50.0% | |
| GGAACTAGGGACAATGCCAT+AGG | - | chr4.4:8132423-8132442 | MS.gene49697:CDS | 50.0% | |
| TCATGGAAGGGAAGAAGAGG+GGG | - | chr4.4:8131600-8131619 | MS.gene49697:CDS | 50.0% | |
| TGGCGAACCATTAGGATGCA+AGG | + | chr4.4:8132793-8132812 | None:intergenic | 50.0% | |
| TTGTCAATGGGAGGCAGAGA+AGG | + | chr4.4:8133080-8133099 | None:intergenic | 50.0% | |
| ! | AGGGGAAGAAGTTGGCTCAA+TGG | - | chr4.4:8131972-8131991 | MS.gene49697:CDS | 50.0% |
| ! | GAACACGCTTTTGTGGGAGA+AGG | - | chr4.4:8132894-8132913 | MS.gene49697:CDS | 50.0% |
| ! | GGTTTATGGGGCGGTACTTT+TGG | - | chr4.4:8132639-8132658 | MS.gene49697:CDS | 50.0% |
| ! | TATGGGGCGGTACTTTTGGA+TGG | - | chr4.4:8132643-8132662 | MS.gene49697:CDS | 50.0% |
| !! | GAAGGTATTGCAGGTGGCTA+TGG | - | chr4.4:8132912-8132931 | MS.gene49697:CDS | 50.0% |
| !! | GTGTATGCTGGTTTATGGGG+CGG | - | chr4.4:8132630-8132649 | MS.gene49697:CDS | 50.0% |
| ACACCACAACCGCAGGAACT+AGG | - | chr4.4:8132409-8132428 | MS.gene49697:CDS | 55.0% | |
| CACCACAACCGCAGGAACTA+GGG | - | chr4.4:8132410-8132429 | MS.gene49697:CDS | 55.0% | |
| CATCAACACAACACAGCCGC+TGG | - | chr4.4:8132180-8132199 | MS.gene49697:CDS | 55.0% | |
| CGCTACGCCTTGCATCCTAA+TGG | - | chr4.4:8132783-8132802 | MS.gene49697:CDS | 55.0% | |
| GGCATTGTCCCTAGTTCCTG+CGG | + | chr4.4:8132421-8132440 | None:intergenic | 55.0% | |
| !! | GTGGGAGAAGGTATTGCAGG+TGG | - | chr4.4:8132906-8132925 | MS.gene49697:CDS | 55.0% |
| AACACAGCCGCTGGAGCAAG+GGG | - | chr4.4:8132189-8132208 | MS.gene49697:CDS | 60.0% | |
| ACAACACAGCCGCTGGAGCA+AGG | - | chr4.4:8132187-8132206 | MS.gene49697:CDS | 60.0% | |
| CAACACAGCCGCTGGAGCAA+GGG | - | chr4.4:8132188-8132207 | MS.gene49697:CDS | 60.0% | |
| CAGCAACACACCACAACCGC+AGG | - | chr4.4:8132402-8132421 | MS.gene49697:CDS | 60.0% | |
| GTCCCTAGTTCCTGCGGTTG+TGG | + | chr4.4:8132415-8132434 | None:intergenic | 60.0% | |
| TCGATGGCCCCTTGCTCCAG+CGG | + | chr4.4:8132199-8132218 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8131133 | 8133145 | 8131133 | ID=MS.gene49697 |
| chr4.4 | mRNA | 8131133 | 8133145 | 8131133 | ID=MS.gene49697.t1;Parent=MS.gene49697 |
| chr4.4 | exon | 8131133 | 8133145 | 8131133 | ID=MS.gene49697.t1.exon1;Parent=MS.gene49697.t1 |
| chr4.4 | CDS | 8131133 | 8133145 | 8131133 | ID=cds.MS.gene49697.t1;Parent=MS.gene49697.t1 |
| Gene Sequence |
| Protein sequence |
