Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030587.t1 | RHN43144.1 | 92.6 | 693 | 50 | 1 | 1 | 693 | 1 | 692 | 0.00E+00 | 1096.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030587.t1 | Q8RWD6 | 39.6 | 694 | 263 | 11 | 14 | 691 | 19 | 572 | 6.7e-133 | 476.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030587.t1 | A0A396GUI7 | 92.6 | 693 | 50 | 1 | 1 | 693 | 1 | 692 | 0.0e+00 | 1096.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030587 | MS.gene030591 | PPI |
| MS.gene030587 | MS.gene49697 | PPI |
| MS.gene030587 | MS.gene70191 | PPI |
| MS.gene030587 | MS.gene013291 | PPI |
| MS.gene030587 | MS.gene40916 | PPI |
| MS.gene030587 | MS.gene06374 | PPI |
| MS.gene030587 | MS.gene49700 | PPI |
| MS.gene030587 | MS.gene70188 | PPI |
| MS.gene030587 | MS.gene049252 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030587.t1 | MTR_8g094190 | 78.932 | 693 | 82 | 7 | 1 | 693 | 1 | 629 | 0.0 | 1082 |
| MS.gene030587.t1 | MTR_8g094150 | 72.387 | 641 | 89 | 8 | 60 | 693 | 7 | 566 | 0.0 | 860 |
| MS.gene030587.t1 | MTR_3g096670 | 50.773 | 388 | 140 | 7 | 10 | 358 | 3 | 378 | 1.39e-121 | 376 |
| MS.gene030587.t1 | MTR_3g096670 | 70.130 | 231 | 69 | 0 | 462 | 692 | 370 | 600 | 3.24e-109 | 344 |
| MS.gene030587.t1 | MTR_3g096670 | 50.773 | 388 | 140 | 7 | 10 | 358 | 3 | 378 | 1.92e-121 | 376 |
| MS.gene030587.t1 | MTR_3g096670 | 70.130 | 231 | 69 | 0 | 462 | 692 | 370 | 600 | 3.51e-109 | 344 |
| MS.gene030587.t1 | MTR_0095s0110 | 92.265 | 181 | 14 | 0 | 513 | 693 | 1 | 181 | 1.96e-118 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030587.t1 | AT5G39450 | 44.776 | 335 | 155 | 9 | 14 | 334 | 19 | 337 | 5.17e-84 | 276 |
| MS.gene030587.t1 | AT5G39450 | 53.947 | 228 | 99 | 2 | 467 | 692 | 350 | 573 | 2.04e-75 | 254 |
| MS.gene030587.t1 | AT5G39460 | 45.593 | 329 | 159 | 7 | 14 | 334 | 12 | 328 | 3.81e-78 | 261 |
| MS.gene030587.t1 | AT5G39460 | 48.696 | 230 | 105 | 5 | 467 | 692 | 341 | 561 | 1.46e-61 | 216 |
| MS.gene030587.t1 | AT5G39490 | 50.958 | 261 | 108 | 5 | 14 | 262 | 11 | 263 | 7.66e-75 | 252 |
| MS.gene030587.t1 | AT5G39490 | 45.690 | 232 | 120 | 2 | 464 | 693 | 330 | 557 | 2.23e-62 | 218 |
| MS.gene030587.t1 | AT5G39480 | 50.958 | 261 | 108 | 5 | 14 | 262 | 12 | 264 | 1.73e-74 | 251 |
| MS.gene030587.t1 | AT5G39480 | 49.785 | 233 | 109 | 3 | 464 | 692 | 330 | 558 | 6.49e-67 | 230 |
| MS.gene030587.t1 | AT5G39470 | 37.363 | 91 | 32 | 1 | 14 | 104 | 96 | 161 | 2.20e-13 | 69.3 |
Find 125 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAGGAGGTTGTTTCTTT+AGG | 0.164715 | 4.2:-8694915 | MS.gene030587:CDS |
| TTAAACCATTGCTTGGTATT+TGG | 0.167263 | 4.2:-8695016 | MS.gene030587:CDS |
| ACCAAGTGTATGCTGGTTTA+TGG | 0.195342 | 4.2:-8693720 | MS.gene030587:CDS |
| CTCAGGAGGTTGTTTCTTTA+GGG | 0.209032 | 4.2:-8694914 | MS.gene030587:CDS |
| TTGTATTCAGATTGAAAATA+AGG | 0.221115 | 4.2:-8694484 | MS.gene030587:CDS |
| TAGATTAGAGGTTCCTAATA+TGG | 0.222044 | 4.2:-8694625 | MS.gene030587:CDS |
| TGAAAACTTCTCTGGGAATT+AGG | 0.230889 | 4.2:+8695198 | None:intergenic |
| GGTTTATGGGGCGGTACTTT+TGG | 0.253329 | 4.2:-8693706 | MS.gene030587:CDS |
| TAAACCATTGCTTGGTATTT+GGG | 0.255038 | 4.2:-8695015 | MS.gene030587:CDS |
| TCCCTCTTTGCACTTCAAAA+TGG | 0.270852 | 4.2:-8693382 | MS.gene030587:CDS |
| GCATACACTTGGTCTTCTTT+AGG | 0.294855 | 4.2:+8693730 | None:intergenic |
| CTAAAACCCAACCTCCTAAA+AGG | 0.296983 | 4.2:+8694687 | None:intergenic |
| TTGCATCTTCTGAGAAAGTT+TGG | 0.305192 | 4.2:-8695142 | MS.gene030587:CDS |
| AATGGCCCAGTTCCCATATT+AGG | 0.312411 | 4.2:+8694612 | None:intergenic |
| GGTGGCTTTAAACATATCTT+TGG | 0.314186 | 4.2:-8694306 | MS.gene030587:CDS |
| GAAGGTATTGCAAGTGGTTA+TGG | 0.318562 | 4.2:-8693433 | MS.gene030587:CDS |
| TCCAAGATTGTTCTATCCTT+TGG | 0.318701 | 4.2:-8694890 | MS.gene030587:CDS |
| TACTAGCCAAGTTAGATTAG+AGG | 0.330399 | 4.2:-8694637 | MS.gene030587:CDS |
| CTAGATCTTCGATGGTTACT+TGG | 0.335719 | 4.2:+8694219 | None:intergenic |
| CTTGCAAGTTAAGTCTTTGC+AGG | 0.339370 | 4.2:+8693317 | None:intergenic |
| CTTCTTCTGATCCGTTTCCT+TGG | 0.339771 | 4.2:-8693507 | MS.gene030587:CDS |
| CCAAGTGTATGCTGGTTTAT+GGG | 0.343323 | 4.2:-8693719 | MS.gene030587:CDS |
| CGTTTCCTTGGGAAACTGAT+AGG | 0.346496 | 4.2:-8693495 | MS.gene030587:CDS |
| ACTAAGATTGAAAACTTCTC+TGG | 0.349744 | 4.2:+8695190 | None:intergenic |
| CACAACACGGCCGCAGGAAC+TGG | 0.352037 | 4.2:-8693937 | MS.gene030587:CDS |
| AGTATGTTCAATGGAATTAG+AGG | 0.363663 | 4.2:-8694442 | MS.gene030587:CDS |
| ACAGAATCATCTCTTGATCT+AGG | 0.368549 | 4.2:+8694585 | None:intergenic |
| TTCTTCTGATCCGTTTCCTT+GGG | 0.370545 | 4.2:-8693506 | MS.gene030587:CDS |
| TAAACAAGATTACCAAGTTC+AGG | 0.378819 | 4.2:+8694981 | None:intergenic |
| AAATATCCAGGAGCAAAATC+TGG | 0.380597 | 4.2:-8693406 | MS.gene030587:CDS |
| ATGGCGATCTTGCCTTTGTT+TGG | 0.382428 | 4.2:-8693363 | MS.gene030587:CDS |
| GAGGTTCCTAATATGGGAAC+TGG | 0.384292 | 4.2:-8694618 | MS.gene030587:CDS |
| CGCTATGCATTGCATCCTAA+TGG | 0.401483 | 4.2:-8693562 | MS.gene030587:CDS |
| AAGAGCATTCCTTGTTCAAA+TGG | 0.407584 | 4.2:-8694526 | MS.gene030587:CDS |
| ATAAACATTGCTGAACCATT+AGG | 0.413798 | 4.2:+8693547 | None:intergenic |
| ACCAAAGGATAGAACAATCT+TGG | 0.422539 | 4.2:+8694889 | None:intergenic |
| CAGCATCACAAAATGATTGC+TGG | 0.437173 | 4.2:-8694021 | MS.gene030587:CDS |
| AGATTAGAGGTTCCTAATAT+GGG | 0.437762 | 4.2:-8694624 | MS.gene030587:CDS |
| TGTTGCTTGAGGTTGAATCT+AGG | 0.437835 | 4.2:-8694737 | MS.gene030587:CDS |
| GGACTTGAATCAAGAGGATA+AGG | 0.438645 | 4.2:+8695266 | None:intergenic |
| ATGTGTTTGCCACAGTTTCA+AGG | 0.439794 | 4.2:-8695223 | MS.gene030587:CDS |
| GCTTTGCATTCTTTATCTCA+TGG | 0.448007 | 4.2:+8693887 | None:intergenic |
| CTGCAACGCAACACGATGGC+AGG | 0.458482 | 4.2:-8694165 | MS.gene030587:CDS |
| GGGGTAGATTGTGTTTATCA+TGG | 0.463874 | 4.2:-8694795 | MS.gene030587:CDS |
| AATCTTGTTTATGTAATGCC+AGG | 0.464568 | 4.2:-8694969 | MS.gene030587:CDS |
| CGATCTTGCCTTTGTTTGGA+AGG | 0.465116 | 4.2:-8693359 | MS.gene030587:CDS |
| CAAAGATCGAGTGCAATTGA+TGG | 0.476070 | 4.2:-8693985 | MS.gene030587:CDS |
| GGTTATGGTTTCAAATATCC+AGG | 0.478786 | 4.2:-8693418 | MS.gene030587:CDS |
| AATGGAATTAGAGGTTGATC+AGG | 0.481928 | 4.2:-8694433 | MS.gene030587:CDS |
| GGCCGAATATGAACAAAAGT+TGG | 0.487071 | 4.2:-8693783 | MS.gene030587:CDS |
| GCTTGTAAACACATTTAAGC+AGG | 0.488155 | 4.2:+8693225 | None:intergenic |
| ACTGTGGCAAACACATCATC+TGG | 0.489039 | 4.2:+8695230 | None:intergenic |
| CCCATAAACCAGCATACACT+TGG | 0.497925 | 4.2:+8693719 | None:intergenic |
| GTGTCACTATCCTTATTGCT+TGG | 0.500008 | 4.2:+8694369 | None:intergenic |
| TTGAGTGTTAAACCATTGCT+TGG | 0.500161 | 4.2:-8695023 | MS.gene030587:CDS |
| AAGGGACAACAACTTCTCAT+TGG | 0.500982 | 4.2:-8693607 | MS.gene030587:CDS |
| TCACTATCCTTATTGCTTGG+AGG | 0.505487 | 4.2:+8694372 | None:intergenic |
| CTATCAGTTTCCCAAGGAAA+CGG | 0.510000 | 4.2:+8693496 | None:intergenic |
| TTGTAATTTATTGTTGCTTG+AGG | 0.510010 | 4.2:-8694748 | MS.gene030587:CDS |
| CTAAGATTGAAAACTTCTCT+GGG | 0.523415 | 4.2:+8695191 | None:intergenic |
| AGGGGAAGAAGTATGTTCAA+TGG | 0.525453 | 4.2:-8694451 | MS.gene030587:CDS |
| GTTCAACAGAATCCTGAACT+TGG | 0.526928 | 4.2:-8694993 | MS.gene030587:CDS |
| GAAAATAAGGAAAATTCTCA+AGG | 0.528849 | 4.2:-8694471 | MS.gene030587:CDS |
| TAGGAACCTCTAATCTAACT+TGG | 0.531329 | 4.2:+8694631 | None:intergenic |
| GGAACTGGAGAGAATGACAT+AGG | 0.532645 | 4.2:-8693922 | MS.gene030587:CDS |
| GAAATTGTTTGCGATTTCGA+TGG | 0.532974 | 4.2:-8694855 | MS.gene030587:CDS |
| CTTCATGGAAGGGAAGAAGA+GGG | 0.535516 | 4.2:-8694816 | MS.gene030587:CDS |
| CACTCAAAGACCTTGTTGAG+TGG | 0.537136 | 4.2:-8695088 | MS.gene030587:CDS |
| AAAGAAGACCAAGTGTATGC+TGG | 0.538643 | 4.2:-8693727 | MS.gene030587:CDS |
| ATGGCTCAAATGTATAAGCT+TGG | 0.541711 | 4.2:-8694507 | MS.gene030587:CDS |
| CAAGGAAACGGATCAGAAGA+AGG | 0.543211 | 4.2:+8693508 | None:intergenic |
| GCTCTCGTATTGGGAGTCGA+AGG | 0.543524 | 4.2:-8693626 | MS.gene030587:CDS |
| ATCAAGAGAAAGAGTCTTGG+TGG | 0.546154 | 4.2:-8694339 | MS.gene030587:CDS |
| ACAAGAGACGATCAAAGATC+TGG | 0.547199 | 4.2:-8694141 | MS.gene030587:CDS |
| CACACTCTCTCCACTCAACA+AGG | 0.560982 | 4.2:+8695078 | None:intergenic |
| CAAGTGTATGCTGGTTTATG+GGG | 0.561849 | 4.2:-8693718 | MS.gene030587:CDS |
| CAGCAACACAACACGGCCGC+AGG | 0.567323 | 4.2:-8693943 | MS.gene030587:CDS |
| TGAATCAAGAGGATAAGGGT+AGG | 0.569984 | 4.2:+8695271 | None:intergenic |
| CTCTCGTATTGGGAGTCGAA+GGG | 0.570981 | 4.2:-8693625 | MS.gene030587:CDS |
| CATCAATACATCACAACCGC+AGG | 0.571677 | 4.2:-8694243 | MS.gene030587:CDS |
| TTGCAAGTTAAGTCTTTGCA+GGG | 0.574271 | 4.2:+8693318 | None:intergenic |
| AAAGATCGAGTGCAATTGAT+GGG | 0.578510 | 4.2:-8693984 | MS.gene030587:CDS |
| AGCGTGTCGAATAATACCTC+AGG | 0.579720 | 4.2:-8694931 | MS.gene030587:CDS |
| TGCATCAAGAGAAAGAGTCT+TGG | 0.581200 | 4.2:-8694342 | MS.gene030587:CDS |
| AATATTGACAACACTGCCAT+CGG | 0.582834 | 4.2:+8694113 | None:intergenic |
| TCTTCATGGAAGGGAAGAAG+AGG | 0.584944 | 4.2:-8694817 | MS.gene030587:CDS |
| AAAATAAGGAAAATTCTCAA+GGG | 0.585290 | 4.2:-8694470 | MS.gene030587:CDS |
| TTGTCAATAGGAGGCAGAGA+AGG | 0.586071 | 4.2:+8693268 | None:intergenic |
| ACATTTGAGCCATTTGAACA+AGG | 0.588906 | 4.2:+8694517 | None:intergenic |
| GAATCAAGAGGATAAGGGTA+GGG | 0.590042 | 4.2:+8695272 | None:intergenic |
| CGAAGATCTAGTACAATCGA+TGG | 0.590437 | 4.2:-8694063 | MS.gene030587:CDS |
| CGGTCGAACTAGATCTTCGA+TGG | 0.597888 | 4.2:+8694211 | None:intergenic |
| GAACTGGAGAGAATGACATA+GGG | 0.599521 | 4.2:-8693921 | MS.gene030587:CDS |
| GTCATTCTCTCCAGTTCCTG+CGG | 0.600499 | 4.2:+8693927 | None:intergenic |
| GCGGGAGAAGGTATTGCAAG+TGG | 0.601335 | 4.2:-8693439 | MS.gene030587:CDS |
| TCTAGATTCCTTCCAAACAA+AGG | 0.601462 | 4.2:+8693351 | None:intergenic |
| CGATTGTACTAGATCTTCGA+TGG | 0.602215 | 4.2:+8694067 | None:intergenic |
| TCTTCTTTAGGAACTTGCAA+AGG | 0.603983 | 4.2:+8693742 | None:intergenic |
| TCATGGAAGGGAAGAAGAGG+GGG | 0.607393 | 4.2:-8694814 | MS.gene030587:CDS |
| TCTCTTGATCTAGGAAACAA+TGG | 0.607460 | 4.2:+8694594 | None:intergenic |
| GACTTGAATCAAGAGGATAA+GGG | 0.608865 | 4.2:+8695267 | None:intergenic |
| TAGGAAACAAGATAATAATG+AGG | 0.608877 | 4.2:-8694718 | MS.gene030587:CDS |
| AATATTGACAGCACTGCCAT+CGG | 0.613779 | 4.2:+8694191 | None:intergenic |
| GCTACAACAGAAACAAAACC+TGG | 0.618777 | 4.2:+8694951 | None:intergenic |
| TTCATGGAAGGGAAGAAGAG+GGG | 0.619678 | 4.2:-8694815 | MS.gene030587:CDS |
| TGAACCCAAATACCAAGCAA+TGG | 0.622950 | 4.2:+8695011 | None:intergenic |
| CCTAAAGAAACAACCTCCTG+AGG | 0.625560 | 4.2:+8694915 | None:intergenic |
| TTTCAAACACAGGTGACCAA+AGG | 0.627505 | 4.2:+8694874 | None:intergenic |
| CGAAGATCTAGTTCGACCGA+TGG | 0.627815 | 4.2:-8694207 | MS.gene030587:CDS |
| GTGTATGCTGGTTTATGGGG+CGG | 0.628467 | 4.2:-8693715 | MS.gene030587:CDS |
| TGCAACGCAACACGATGGCA+GGG | 0.630900 | 4.2:-8694164 | MS.gene030587:CDS |
| CAAAGATCTGGTACAACCGA+TGG | 0.633916 | 4.2:-8694129 | MS.gene030587:CDS |
| AGGTTCCTAATATGGGAACT+GGG | 0.633956 | 4.2:-8694617 | MS.gene030587:CDS |
| TCGCAAACAATTTCAAACAC+AGG | 0.643858 | 4.2:+8694864 | None:intergenic |
| GAGTTCCTATCAGTTTCCCA+AGG | 0.655964 | 4.2:+8693490 | None:intergenic |
| TATTGATCAGCAACACAACA+CGG | 0.656491 | 4.2:-8693950 | MS.gene030587:CDS |
| TCATCTGGTAGATGAATAAG+CGG | 0.658669 | 4.2:+8695245 | None:intergenic |
| AAATAAGGAAAATTCTCAAG+GGG | 0.659702 | 4.2:-8694469 | MS.gene030587:CDS |
| TCGATGGTTACTTGGCCCTG+CGG | 0.661597 | 4.2:+8694227 | None:intergenic |
| ATAAGCGGACTTGAATCAAG+AGG | 0.663015 | 4.2:+8695260 | None:intergenic |
| ATCAATACATCACAACCGCA+GGG | 0.666747 | 4.2:-8694242 | MS.gene030587:CDS |
| GTGTCGAATAATACCTCAGG+AGG | 0.669560 | 4.2:-8694928 | MS.gene030587:CDS |
| AATTAGGTACCTTGAAACTG+TGG | 0.670120 | 4.2:+8695214 | None:intergenic |
| AGATCTAGTACAATCGATGG+AGG | 0.682974 | 4.2:-8694060 | MS.gene030587:CDS |
| TGATCTGCAACGCAACACGA+TGG | 0.698856 | 4.2:-8694169 | MS.gene030587:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGAAAAATTGTCAAT+AGG | + | chr4.2:8695250-8695269 | None:intergenic | 15.0% |
| !! | AAAATAAGGAAAATTCTCAA+GGG | - | chr4.2:8694033-8694052 | MS.gene030587:CDS | 20.0% |
| !! | TTGTATTCAGATTGAAAATA+AGG | - | chr4.2:8694019-8694038 | MS.gene030587:CDS | 20.0% |
| !!! | TCTAATATGTTTTTTCTTCA+TGG | - | chr4.2:8693672-8693691 | MS.gene030587:CDS | 20.0% |
| !!! | TGTAAATTTTCAGAAAGATT+TGG | - | chr4.2:8693938-8693957 | MS.gene030587:CDS | 20.0% |
| ! | AAATAAGGAAAATTCTCAAG+GGG | - | chr4.2:8694034-8694053 | MS.gene030587:CDS | 25.0% |
| ! | ATTGGAACAAAAATATTGGA+AGG | - | chr4.2:8694914-8694933 | MS.gene030587:CDS | 25.0% |
| ! | GAAAATAAGGAAAATTCTCA+AGG | - | chr4.2:8694032-8694051 | MS.gene030587:CDS | 25.0% |
| ! | TAGGAAACAAGATAATAATG+AGG | - | chr4.2:8693785-8693804 | MS.gene030587:CDS | 25.0% |
| ! | TATGAAAAATTGTCAATAGG+AGG | + | chr4.2:8695247-8695266 | None:intergenic | 25.0% |
| ! | TCTCATTGGAACAAAAATAT+TGG | - | chr4.2:8694910-8694929 | MS.gene030587:CDS | 25.0% |
| !! | AACCAACTTTTGTTCATATT+CGG | + | chr4.2:8694725-8694744 | None:intergenic | 25.0% |
| !! | TTGTAATTTATTGTTGCTTG+AGG | - | chr4.2:8693755-8693774 | MS.gene030587:CDS | 25.0% |
| !!! | AGAAAGAATAAAGCCTTTTT+TGG | + | chr4.2:8694854-8694873 | None:intergenic | 25.0% |
| !!! | ATATGTTTTTTCTTCATGGA+AGG | - | chr4.2:8693676-8693695 | MS.gene030587:CDS | 25.0% |
| !!! | TATGTTTTTTCTTCATGGAA+GGG | - | chr4.2:8693677-8693696 | MS.gene030587:CDS | 25.0% |
| ACTAAGATTGAAAACTTCTC+TGG | + | chr4.2:8693316-8693335 | None:intergenic | 30.0% | |
| AGATTAGAGGTTCCTAATAT+GGG | - | chr4.2:8693879-8693898 | MS.gene030587:CDS | 30.0% | |
| AGTATGTTCAATGGAATTAG+AGG | - | chr4.2:8694061-8694080 | MS.gene030587:CDS | 30.0% | |
| ATAAACATTGCTGAACCATT+AGG | + | chr4.2:8694959-8694978 | None:intergenic | 30.0% | |
| CTAAGATTGAAAACTTCTCT+GGG | + | chr4.2:8693315-8693334 | None:intergenic | 30.0% | |
| TAAACAAGATTACCAAGTTC+AGG | + | chr4.2:8693525-8693544 | None:intergenic | 30.0% | |
| TAAACCATTGCTTGGTATTT+GGG | - | chr4.2:8693488-8693507 | MS.gene030587:CDS | 30.0% | |
| TAGATTAGAGGTTCCTAATA+TGG | - | chr4.2:8693878-8693897 | MS.gene030587:CDS | 30.0% | |
| TTAAACCATTGCTTGGTATT+TGG | - | chr4.2:8693487-8693506 | MS.gene030587:CDS | 30.0% | |
| TTCTCAAAACAAGCCAAAAA+AGG | - | chr4.2:8694838-8694857 | MS.gene030587:CDS | 30.0% | |
| ! | AATATTGAACATGCTTTTGC+GGG | - | chr4.2:8695046-8695065 | MS.gene030587:CDS | 30.0% |
| ! | AATCTTGTTTATGTAATGCC+AGG | - | chr4.2:8693534-8693553 | MS.gene030587:CDS | 30.0% |
| ! | ATGAGGTAATGATTCCTTTT+AGG | - | chr4.2:8693802-8693821 | MS.gene030587:CDS | 30.0% |
| ! | GAATATTGAACATGCTTTTG+CGG | - | chr4.2:8695045-8695064 | MS.gene030587:CDS | 30.0% |
| ! | GCAAAATTATCATCTTTTCG+AGG | - | chr4.2:8694695-8694714 | MS.gene030587:CDS | 30.0% |
| !! | AACTTTTGAAGAAAGGAAGA+AGG | - | chr4.2:8695209-8695228 | MS.gene030587:CDS | 30.0% |
| !! | AATTATCATCTTTTCGAGGT+TGG | - | chr4.2:8694699-8694718 | MS.gene030587:CDS | 30.0% |
| !! | TTGCAAGAACTTTTGAAGAA+AGG | - | chr4.2:8695202-8695221 | MS.gene030587:CDS | 30.0% |
| !! | TTTTGAGAAGGTTTTTCATG+AGG | + | chr4.2:8694827-8694846 | None:intergenic | 30.0% |
| !!! | TTTTTTGGCTTGTTTTGAGA+AGG | + | chr4.2:8694839-8694858 | None:intergenic | 30.0% |
| AAAGATCGAGTGCAATTGAT+GGG | - | chr4.2:8694519-8694538 | MS.gene030587:CDS | 35.0% | |
| AAATATCCAGGAGCAAAATC+TGG | - | chr4.2:8695097-8695116 | MS.gene030587:CDS | 35.0% | |
| AATATTGACAACACTGCCAT+CGG | + | chr4.2:8694393-8694412 | None:intergenic | 35.0% | |
| AATTAGGTACCTTGAAACTG+TGG | + | chr4.2:8693292-8693311 | None:intergenic | 35.0% | |
| ACAGAATCATCTCTTGATCT+AGG | + | chr4.2:8693921-8693940 | None:intergenic | 35.0% | |
| ACATTTGAGCCATTTGAACA+AGG | + | chr4.2:8693989-8694008 | None:intergenic | 35.0% | |
| ACCAAAGGATAGAACAATCT+TGG | + | chr4.2:8693617-8693636 | None:intergenic | 35.0% | |
| ATGGCTCAAATGTATAAGCT+TGG | - | chr4.2:8693996-8694015 | MS.gene030587:CDS | 35.0% | |
| GAAATTGTTTGCGATTTCGA+TGG | - | chr4.2:8693648-8693667 | MS.gene030587:CDS | 35.0% | |
| GACTTGAATCAAGAGGATAA+GGG | + | chr4.2:8693239-8693258 | None:intergenic | 35.0% | |
| GCTTGTAAACACATTTAAGC+AGG | + | chr4.2:8695281-8695300 | None:intergenic | 35.0% | |
| GCTTTGCATTCTTTATCTCA+TGG | + | chr4.2:8694619-8694638 | None:intergenic | 35.0% | |
| GGTTATGGTTTCAAATATCC+AGG | - | chr4.2:8695085-8695104 | MS.gene030587:CDS | 35.0% | |
| TACTAGCCAAGTTAGATTAG+AGG | - | chr4.2:8693866-8693885 | MS.gene030587:CDS | 35.0% | |
| TAGGAACCTCTAATCTAACT+TGG | + | chr4.2:8693875-8693894 | None:intergenic | 35.0% | |
| TATTGATCAGCAACACAACA+CGG | - | chr4.2:8694553-8694572 | MS.gene030587:CDS | 35.0% | |
| TCATCTGGTAGATGAATAAG+CGG | + | chr4.2:8693261-8693280 | None:intergenic | 35.0% | |
| TCCAAGATTGTTCTATCCTT+TGG | - | chr4.2:8693613-8693632 | MS.gene030587:CDS | 35.0% | |
| TCGCAAACAATTTCAAACAC+AGG | + | chr4.2:8693642-8693661 | None:intergenic | 35.0% | |
| TCTAGATTCCTTCCAAACAA+AGG | + | chr4.2:8695155-8695174 | None:intergenic | 35.0% | |
| TCTCTTGATCTAGGAAACAA+TGG | + | chr4.2:8693912-8693931 | None:intergenic | 35.0% | |
| TTGAGTGTTAAACCATTGCT+TGG | - | chr4.2:8693480-8693499 | MS.gene030587:CDS | 35.0% | |
| TTGCAAGTTAAGTCTTTGCA+GGG | + | chr4.2:8695188-8695207 | None:intergenic | 35.0% | |
| ! | AATGGAATTAGAGGTTGATC+AGG | - | chr4.2:8694070-8694089 | MS.gene030587:CDS | 35.0% |
| ! | AGGTAATGATTCCTTTTAGG+AGG | - | chr4.2:8693805-8693824 | MS.gene030587:CDS | 35.0% |
| ! | CTTTCTTTTGCTCTCGTATT+GGG | - | chr4.2:8694868-8694887 | MS.gene030587:CDS | 35.0% |
| ! | TCTTCTTTAGGAACTTGCAA+AGG | + | chr4.2:8694764-8694783 | None:intergenic | 35.0% |
| ! | TCTTTCTTTTGCTCTCGTAT+TGG | - | chr4.2:8694867-8694886 | MS.gene030587:CDS | 35.0% |
| ! | TGAAAACTTCTCTGGGAATT+AGG | + | chr4.2:8693308-8693327 | None:intergenic | 35.0% |
| ! | TTGCATCTTCTGAGAAAGTT+TGG | - | chr4.2:8693361-8693380 | MS.gene030587:CDS | 35.0% |
| !! | AAGAGCATTCCTTGTTCAAA+TGG | - | chr4.2:8693977-8693996 | MS.gene030587:CDS | 35.0% |
| !! | AATGATTCCTTTTAGGAGGT+TGG | - | chr4.2:8693809-8693828 | MS.gene030587:CDS | 35.0% |
| !! | AGAGTCTTGGTGGTTATTTT+TGG | - | chr4.2:8694174-8694193 | MS.gene030587:CDS | 35.0% |
| !! | ATGATTCCTTTTAGGAGGTT+GGG | - | chr4.2:8693810-8693829 | MS.gene030587:CDS | 35.0% |
| !! | GGTGGCTTTAAACATATCTT+TGG | - | chr4.2:8694197-8694216 | MS.gene030587:CDS | 35.0% |
| !! | TTTTAGGAGGTTGGGTTTTA+GGG | - | chr4.2:8693818-8693837 | MS.gene030587:CDS | 35.0% |
| !!! | AGTCTTGGTGGTTATTTTTG+GGG | - | chr4.2:8694176-8694195 | MS.gene030587:CDS | 35.0% |
| !!! | GAAAGATTTGGTGCTTTTGA+AGG | - | chr4.2:8693950-8693969 | MS.gene030587:CDS | 35.0% |
| !!! | GAGTCTTGGTGGTTATTTTT+GGG | - | chr4.2:8694175-8694194 | MS.gene030587:CDS | 35.0% |
| AAAGAAGACCAAGTGTATGC+TGG | - | chr4.2:8694776-8694795 | MS.gene030587:CDS | 40.0% | |
| AAGGGACAACAACTTCTCAT+TGG | - | chr4.2:8694896-8694915 | MS.gene030587:CDS | 40.0% | |
| AATATTGACAGCACTGCCAT+CGG | + | chr4.2:8694315-8694334 | None:intergenic | 40.0% | |
| ACAAGAGACGATCAAAGATC+TGG | - | chr4.2:8694362-8694381 | MS.gene030587:CDS | 40.0% | |
| AGATCTAGTACAATCGATGG+AGG | - | chr4.2:8694443-8694462 | MS.gene030587:CDS | 40.0% | |
| AGGTTCCTAATATGGGAACT+GGG | - | chr4.2:8693886-8693905 | MS.gene030587:CDS | 40.0% | |
| ATCAAGAGAAAGAGTCTTGG+TGG | - | chr4.2:8694164-8694183 | MS.gene030587:CDS | 40.0% | |
| ATCAATACATCACAACCGCA+GGG | - | chr4.2:8694261-8694280 | MS.gene030587:CDS | 40.0% | |
| ATGTGTTTGCCACAGTTTCA+AGG | - | chr4.2:8693280-8693299 | MS.gene030587:CDS | 40.0% | |
| CAAAGATCGAGTGCAATTGA+TGG | - | chr4.2:8694518-8694537 | MS.gene030587:CDS | 40.0% | |
| CAGCATCACAAAATGATTGC+TGG | - | chr4.2:8694482-8694501 | MS.gene030587:CDS | 40.0% | |
| CGAAGATCTAGTACAATCGA+TGG | - | chr4.2:8694440-8694459 | MS.gene030587:CDS | 40.0% | |
| CGATTGTACTAGATCTTCGA+TGG | + | chr4.2:8694439-8694458 | None:intergenic | 40.0% | |
| CTAAAACCCAACCTCCTAAA+AGG | + | chr4.2:8693819-8693838 | None:intergenic | 40.0% | |
| CTAGATCTTCGATGGTTACT+TGG | + | chr4.2:8694287-8694306 | None:intergenic | 40.0% | |
| CTATCAGTTTCCCAAGGAAA+CGG | + | chr4.2:8695010-8695029 | None:intergenic | 40.0% | |
| CTTGCAAGTTAAGTCTTTGC+AGG | + | chr4.2:8695189-8695208 | None:intergenic | 40.0% | |
| GAACTGGAGAGAATGACATA+GGG | - | chr4.2:8694582-8694601 | MS.gene030587:CDS | 40.0% | |
| GAATCAAGAGGATAAGGGTA+GGG | + | chr4.2:8693234-8693253 | None:intergenic | 40.0% | |
| GCTACAACAGAAACAAAACC+TGG | + | chr4.2:8693555-8693574 | None:intergenic | 40.0% | |
| GGACTTGAATCAAGAGGATA+AGG | + | chr4.2:8693240-8693259 | None:intergenic | 40.0% | |
| GGCCGAATATGAACAAAAGT+TGG | - | chr4.2:8694720-8694739 | MS.gene030587:CDS | 40.0% | |
| GGGGTAGATTGTGTTTATCA+TGG | - | chr4.2:8693708-8693727 | MS.gene030587:CDS | 40.0% | |
| GTTCAACAGAATCCTGAACT+TGG | - | chr4.2:8693510-8693529 | MS.gene030587:CDS | 40.0% | |
| TCACTATCCTTATTGCTTGG+AGG | + | chr4.2:8694134-8694153 | None:intergenic | 40.0% | |
| TCCCTCTTTGCACTTCAAAA+TGG | - | chr4.2:8695121-8695140 | MS.gene030587:CDS | 40.0% | |
| TGAACCCAAATACCAAGCAA+TGG | + | chr4.2:8693495-8693514 | None:intergenic | 40.0% | |
| TGAATCAAGAGGATAAGGGT+AGG | + | chr4.2:8693235-8693254 | None:intergenic | 40.0% | |
| TGCATCAAGAGAAAGAGTCT+TGG | - | chr4.2:8694161-8694180 | MS.gene030587:CDS | 40.0% | |
| TTCTTCTGATCCGTTTCCTT+GGG | - | chr4.2:8694997-8695016 | MS.gene030587:CDS | 40.0% | |
| TTTCAAACACAGGTGACCAA+AGG | + | chr4.2:8693632-8693651 | None:intergenic | 40.0% | |
| ! | AGGGGAAGAAGTATGTTCAA+TGG | - | chr4.2:8694052-8694071 | MS.gene030587:CDS | 40.0% |
| ! | ATAAGCGGACTTGAATCAAG+AGG | + | chr4.2:8693246-8693265 | None:intergenic | 40.0% |
| ! | CTCTTTTCCTCCAAGCAATA+AGG | - | chr4.2:8694124-8694143 | MS.gene030587:CDS | 40.0% |
| ! | GCATACACTTGGTCTTCTTT+AGG | + | chr4.2:8694776-8694795 | None:intergenic | 40.0% |
| ! | GTGTCACTATCCTTATTGCT+TGG | + | chr4.2:8694137-8694156 | None:intergenic | 40.0% |
| ! | TGTTGCTTGAGGTTGAATCT+AGG | - | chr4.2:8693766-8693785 | MS.gene030587:CDS | 40.0% |
| !! | ACCAAGTGTATGCTGGTTTA+TGG | - | chr4.2:8694783-8694802 | MS.gene030587:CDS | 40.0% |
| !! | CAAGTGTATGCTGGTTTATG+GGG | - | chr4.2:8694785-8694804 | MS.gene030587:CDS | 40.0% |
| !! | CCAAGTGTATGCTGGTTTAT+GGG | - | chr4.2:8694784-8694803 | MS.gene030587:CDS | 40.0% |
| !! | CTCAGGAGGTTGTTTCTTTA+GGG | - | chr4.2:8693589-8693608 | MS.gene030587:CDS | 40.0% |
| !! | CTTTTAGGAGGTTGGGTTTT+AGG | - | chr4.2:8693817-8693836 | MS.gene030587:CDS | 40.0% |
| !! | GAAGGTATTGCAAGTGGTTA+TGG | - | chr4.2:8695070-8695089 | MS.gene030587:CDS | 40.0% |
| !!! | GCCATTTTGAAGTGCAAAGA+GGG | + | chr4.2:8695125-8695144 | None:intergenic | 40.0% |
| AATGGCCCAGTTCCCATATT+AGG | + | chr4.2:8693894-8693913 | None:intergenic | 45.0% | |
| ACTGTGGCAAACACATCATC+TGG | + | chr4.2:8693276-8693295 | None:intergenic | 45.0% | |
| AGCGTGTCGAATAATACCTC+AGG | - | chr4.2:8693572-8693591 | MS.gene030587:CDS | 45.0% | |
| ATGGCGATCTTGCCTTTGTT+TGG | - | chr4.2:8695140-8695159 | MS.gene030587:CDS | 45.0% | |
| CAAAGATCTGGTACAACCGA+TGG | - | chr4.2:8694374-8694393 | MS.gene030587:CDS | 45.0% | |
| CAAGGAAACGGATCAGAAGA+AGG | + | chr4.2:8694998-8695017 | None:intergenic | 45.0% | |
| CACTCAAAGACCTTGTTGAG+TGG | - | chr4.2:8693415-8693434 | MS.gene030587:CDS | 45.0% | |
| CATCAATACATCACAACCGC+AGG | - | chr4.2:8694260-8694279 | MS.gene030587:CDS | 45.0% | |
| CCCATAAACCAGCATACACT+TGG | + | chr4.2:8694787-8694806 | None:intergenic | 45.0% | |
| CCTAAAGAAACAACCTCCTG+AGG | + | chr4.2:8693591-8693610 | None:intergenic | 45.0% | |
| CGCTATGCATTGCATCCTAA+TGG | - | chr4.2:8694941-8694960 | MS.gene030587:CDS | 45.0% | |
| CGTTTCCTTGGGAAACTGAT+AGG | - | chr4.2:8695008-8695027 | MS.gene030587:CDS | 45.0% | |
| CTTCATGGAAGGGAAGAAGA+GGG | - | chr4.2:8693687-8693706 | MS.gene030587:CDS | 45.0% | |
| CTTCTTCTGATCCGTTTCCT+TGG | - | chr4.2:8694996-8695015 | MS.gene030587:CDS | 45.0% | |
| GAGGTTCCTAATATGGGAAC+TGG | - | chr4.2:8693885-8693904 | MS.gene030587:CDS | 45.0% | |
| GAGTTCCTATCAGTTTCCCA+AGG | + | chr4.2:8695016-8695035 | None:intergenic | 45.0% | |
| GGAACTGGAGAGAATGACAT+AGG | - | chr4.2:8694581-8694600 | MS.gene030587:CDS | 45.0% | |
| GTGTCGAATAATACCTCAGG+AGG | - | chr4.2:8693575-8693594 | MS.gene030587:CDS | 45.0% | |
| TCTTCATGGAAGGGAAGAAG+AGG | - | chr4.2:8693686-8693705 | MS.gene030587:CDS | 45.0% | |
| TTCATGGAAGGGAAGAAGAG+GGG | - | chr4.2:8693688-8693707 | MS.gene030587:CDS | 45.0% | |
| TTGTCAATAGGAGGCAGAGA+AGG | + | chr4.2:8695238-8695257 | None:intergenic | 45.0% | |
| ! | CGATCTTGCCTTTGTTTGGA+AGG | - | chr4.2:8695144-8695163 | MS.gene030587:CDS | 45.0% |
| !! | CCTCAGGAGGTTGTTTCTTT+AGG | - | chr4.2:8693588-8693607 | MS.gene030587:CDS | 45.0% |
| !!! | CGCCATTTTGAAGTGCAAAG+AGG | + | chr4.2:8695126-8695145 | None:intergenic | 45.0% |
| !!! | CTTGGTGGTTATTTTTGGGG+TGG | - | chr4.2:8694179-8694198 | MS.gene030587:CDS | 45.0% |
| CACACTCTCTCCACTCAACA+AGG | + | chr4.2:8693428-8693447 | None:intergenic | 50.0% | |
| CGGTCGAACTAGATCTTCGA+TGG | + | chr4.2:8694295-8694314 | None:intergenic | 50.0% | |
| CTCTCGTATTGGGAGTCGAA+GGG | - | chr4.2:8694878-8694897 | MS.gene030587:CDS | 50.0% | |
| GTCATTCTCTCCAGTTCCTG+CGG | + | chr4.2:8694579-8694598 | None:intergenic | 50.0% | |
| TCATGGAAGGGAAGAAGAGG+GGG | - | chr4.2:8693689-8693708 | MS.gene030587:CDS | 50.0% | |
| TGATCTGCAACGCAACACGA+TGG | - | chr4.2:8694334-8694353 | MS.gene030587:CDS | 50.0% | |
| ! | AGGGAACCAGATTTTGCTCC+TGG | + | chr4.2:8695106-8695125 | None:intergenic | 50.0% |
| ! | CGAAGATCTAGTTCGACCGA+TGG | - | chr4.2:8694296-8694315 | MS.gene030587:CDS | 50.0% |
| ! | GAACATGCTTTTGCGGGAGA+AGG | - | chr4.2:8695052-8695071 | MS.gene030587:CDS | 50.0% |
| ! | GGTTTATGGGGCGGTACTTT+TGG | - | chr4.2:8694797-8694816 | MS.gene030587:CDS | 50.0% |
| ! | TATGGGGCGGTACTTTTGGA+TGG | - | chr4.2:8694801-8694820 | MS.gene030587:CDS | 50.0% |
| !! | GTGTATGCTGGTTTATGGGG+CGG | - | chr4.2:8694788-8694807 | MS.gene030587:CDS | 50.0% |
| GCTCTCGTATTGGGAGTCGA+AGG | - | chr4.2:8694877-8694896 | MS.gene030587:CDS | 55.0% | |
| TCGATGGTTACTTGGCCCTG+CGG | + | chr4.2:8694279-8694298 | None:intergenic | 55.0% | |
| TGCAACGCAACACGATGGCA+GGG | - | chr4.2:8694339-8694358 | MS.gene030587:CDS | 55.0% | |
| !! | GCGGGAGAAGGTATTGCAAG+TGG | - | chr4.2:8695064-8695083 | MS.gene030587:CDS | 55.0% |
| CTGCAACGCAACACGATGGC+AGG | - | chr4.2:8694338-8694357 | MS.gene030587:CDS | 60.0% | |
| CACAACACGGCCGCAGGAAC+TGG | - | chr4.2:8694566-8694585 | MS.gene030587:CDS | 65.0% | |
| CAGCAACACAACACGGCCGC+AGG | - | chr4.2:8694560-8694579 | MS.gene030587:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 8693222 | 8695303 | 8693222 | ID=MS.gene030587 |
| chr4.2 | mRNA | 8693222 | 8695303 | 8693222 | ID=MS.gene030587.t1;Parent=MS.gene030587 |
| chr4.2 | exon | 8693222 | 8695303 | 8693222 | ID=MS.gene030587.t1.exon1;Parent=MS.gene030587.t1 |
| chr4.2 | CDS | 8693222 | 8695303 | 8693222 | ID=cds.MS.gene030587.t1;Parent=MS.gene030587.t1 |
| Gene Sequence |
| Protein sequence |
