Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013379.t1 | XP_003602495.1 | 98.6 | 661 | 9 | 0 | 1 | 661 | 1 | 661 | 0.00E+00 | 1266.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013379.t1 | Q9LV93 | 77.9 | 661 | 126 | 4 | 1 | 655 | 1 | 647 | 8.2e-288 | 990.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013379.t1 | G7JAB4 | 98.6 | 661 | 9 | 0 | 1 | 661 | 1 | 661 | 0.0e+00 | 1266.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013379 | MS.gene030781 | PPI |
| MS.gene013379 | MS.gene31234 | PPI |
| MS.gene013379 | MS.gene050086 | PPI |
| MS.gene013379 | MS.gene028666 | PPI |
| MS.gene013379 | MS.gene57427 | PPI |
| MS.gene013379 | MS.gene28100 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013379.t1 | MTR_3g095010 | 98.714 | 700 | 9 | 0 | 1 | 700 | 1 | 700 | 0.0 | 1424 |
| MS.gene013379.t1 | MTR_2g095440 | 30.726 | 537 | 350 | 7 | 99 | 632 | 57 | 574 | 9.72e-77 | 258 |
| MS.gene013379.t1 | MTR_2g095440 | 26.316 | 247 | 149 | 4 | 433 | 650 | 64 | 306 | 3.19e-19 | 92.4 |
| MS.gene013379.t1 | MTR_2g095440 | 30.943 | 530 | 344 | 7 | 106 | 632 | 4 | 514 | 1.39e-76 | 255 |
| MS.gene013379.t1 | MTR_2g095440 | 26.316 | 247 | 149 | 4 | 433 | 650 | 4 | 246 | 5.14e-19 | 91.7 |
| MS.gene013379.t1 | MTR_2g095440 | 31.002 | 529 | 343 | 7 | 107 | 632 | 11 | 520 | 1.90e-76 | 255 |
| MS.gene013379.t1 | MTR_2g095440 | 26.531 | 245 | 147 | 4 | 435 | 650 | 12 | 252 | 5.08e-19 | 91.7 |
| MS.gene013379.t1 | MTR_4g057795 | 30.540 | 537 | 351 | 7 | 99 | 632 | 57 | 574 | 6.88e-76 | 255 |
| MS.gene013379.t1 | MTR_4g057795 | 26.316 | 247 | 149 | 4 | 433 | 650 | 64 | 306 | 2.48e-19 | 92.8 |
| MS.gene013379.t1 | MTR_8g075040 | 28.922 | 612 | 368 | 14 | 83 | 656 | 184 | 766 | 9.85e-68 | 237 |
| MS.gene013379.t1 | MTR_4g057795 | 31.410 | 468 | 306 | 6 | 168 | 632 | 9 | 464 | 1.26e-67 | 230 |
| MS.gene013379.t1 | MTR_4g057795 | 27.586 | 145 | 102 | 1 | 506 | 650 | 55 | 196 | 6.15e-14 | 75.1 |
| MS.gene013379.t1 | MTR_7g018380 | 28.502 | 614 | 370 | 14 | 83 | 656 | 131 | 715 | 5.69e-67 | 234 |
| MS.gene013379.t1 | MTR_3g080970 | 29.189 | 555 | 364 | 10 | 97 | 636 | 166 | 706 | 1.36e-66 | 233 |
| MS.gene013379.t1 | MTR_1g066620 | 29.701 | 569 | 355 | 12 | 116 | 656 | 10 | 561 | 4.13e-65 | 226 |
| MS.gene013379.t1 | MTR_3g096300 | 31.383 | 188 | 87 | 6 | 422 | 583 | 21 | 192 | 6.01e-16 | 79.0 |
| MS.gene013379.t1 | MTR_8g442660 | 31.383 | 188 | 87 | 6 | 422 | 583 | 21 | 192 | 6.01e-16 | 79.0 |
| MS.gene013379.t1 | MTR_4g081190 | 28.063 | 253 | 147 | 9 | 405 | 634 | 971 | 1211 | 6.61e-15 | 79.3 |
| MS.gene013379.t1 | MTR_1g063170 | 27.236 | 246 | 152 | 8 | 430 | 650 | 1052 | 1295 | 1.52e-14 | 78.2 |
| MS.gene013379.t1 | MTR_8g022270 | 26.383 | 235 | 149 | 7 | 427 | 639 | 592 | 824 | 4.04e-14 | 77.0 |
| MS.gene013379.t1 | MTR_7g102070 | 26.016 | 246 | 155 | 8 | 430 | 650 | 1078 | 1321 | 5.62e-14 | 76.3 |
| MS.gene013379.t1 | MTR_1567s0010 | 29.353 | 201 | 123 | 6 | 448 | 630 | 241 | 440 | 8.67e-14 | 74.7 |
| MS.gene013379.t1 | MTR_3g093430 | 27.477 | 222 | 128 | 9 | 411 | 606 | 345 | 559 | 2.74e-12 | 70.9 |
| MS.gene013379.t1 | MTR_1g059830 | 29.231 | 195 | 111 | 7 | 437 | 606 | 384 | 576 | 3.67e-12 | 70.1 |
| MS.gene013379.t1 | MTR_1g025560 | 29.592 | 196 | 116 | 6 | 433 | 606 | 994 | 1189 | 1.35e-11 | 68.6 |
| MS.gene013379.t1 | MTR_5g029750 | 30.811 | 185 | 103 | 7 | 444 | 606 | 370 | 551 | 1.40e-11 | 68.6 |
| MS.gene013379.t1 | MTR_3g437870 | 25.094 | 267 | 169 | 8 | 452 | 688 | 642 | 907 | 3.00e-11 | 67.4 |
| MS.gene013379.t1 | MTR_7g079540 | 27.826 | 230 | 128 | 6 | 432 | 624 | 85 | 313 | 3.92e-11 | 65.5 |
| MS.gene013379.t1 | MTR_1g114170 | 30.178 | 169 | 103 | 5 | 461 | 619 | 377 | 540 | 8.62e-11 | 65.5 |
| MS.gene013379.t1 | MTR_3g086430 | 28.079 | 203 | 124 | 6 | 444 | 626 | 1015 | 1215 | 9.09e-11 | 65.9 |
| MS.gene013379.t1 | MTR_7g079540 | 28.251 | 223 | 122 | 6 | 432 | 617 | 85 | 306 | 9.31e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013379.t1 | AT5G64840 | 79.096 | 708 | 124 | 6 | 1 | 700 | 1 | 692 | 0.0 | 1085 |
| MS.gene013379.t1 | AT5G09930 | 74.290 | 704 | 151 | 5 | 1 | 700 | 1 | 678 | 0.0 | 997 |
| MS.gene013379.t1 | AT5G60790 | 29.644 | 533 | 353 | 6 | 103 | 632 | 66 | 579 | 1.09e-72 | 247 |
| MS.gene013379.t1 | AT5G60790 | 26.016 | 246 | 151 | 4 | 433 | 650 | 69 | 311 | 6.32e-18 | 88.6 |
| MS.gene013379.t1 | AT1G64550 | 29.242 | 554 | 368 | 10 | 96 | 636 | 165 | 707 | 1.30e-69 | 241 |
| MS.gene013379.t1 | AT3G54540 | 28.242 | 563 | 360 | 12 | 106 | 638 | 163 | 711 | 1.21e-63 | 225 |
| MS.gene013379.t1 | AT3G54540 | 26.421 | 299 | 180 | 5 | 433 | 692 | 163 | 460 | 6.02e-24 | 107 |
| MS.gene013379.t1 | AT3G54540 | 28.242 | 563 | 360 | 12 | 106 | 638 | 163 | 711 | 1.21e-63 | 225 |
| MS.gene013379.t1 | AT3G54540 | 26.421 | 299 | 180 | 5 | 433 | 692 | 163 | 460 | 6.02e-24 | 107 |
| MS.gene013379.t1 | AT1G27940 | 25.778 | 225 | 137 | 8 | 428 | 628 | 155 | 373 | 6.55e-13 | 72.8 |
| MS.gene013379.t1 | AT1G27940 | 26.904 | 197 | 120 | 6 | 433 | 606 | 790 | 985 | 1.45e-12 | 71.6 |
| MS.gene013379.t1 | AT1G28010 | 26.961 | 204 | 123 | 6 | 447 | 628 | 389 | 588 | 6.88e-13 | 72.8 |
| MS.gene013379.t1 | AT1G28010 | 26.396 | 197 | 121 | 6 | 433 | 606 | 1006 | 1201 | 2.74e-11 | 67.8 |
| MS.gene013379.t1 | AT4G33460 | 31.500 | 200 | 98 | 9 | 433 | 606 | 40 | 226 | 8.45e-13 | 69.7 |
| MS.gene013379.t1 | AT1G27940 | 25.778 | 225 | 137 | 8 | 428 | 628 | 369 | 587 | 1.35e-12 | 72.0 |
| MS.gene013379.t1 | AT1G27940 | 26.904 | 197 | 120 | 6 | 433 | 606 | 1004 | 1199 | 2.80e-12 | 70.9 |
| MS.gene013379.t1 | AT4G25960 | 27.391 | 230 | 143 | 7 | 444 | 653 | 415 | 640 | 3.31e-12 | 70.9 |
| MS.gene013379.t1 | AT5G52860 | 25.547 | 274 | 177 | 6 | 452 | 699 | 49 | 321 | 5.88e-12 | 69.3 |
| MS.gene013379.t1 | AT3G28390 | 25.974 | 231 | 147 | 9 | 447 | 657 | 364 | 590 | 1.32e-11 | 68.9 |
| MS.gene013379.t1 | AT1G65410 | 30.374 | 214 | 111 | 9 | 106 | 310 | 85 | 269 | 1.69e-11 | 66.6 |
| MS.gene013379.t1 | AT3G28345 | 23.132 | 281 | 188 | 10 | 430 | 686 | 356 | 632 | 2.15e-11 | 68.2 |
| MS.gene013379.t1 | AT3G28415 | 27.556 | 225 | 137 | 9 | 447 | 650 | 355 | 574 | 4.07e-11 | 67.0 |
| MS.gene013379.t1 | AT1G10680 | 27.322 | 183 | 112 | 5 | 444 | 606 | 375 | 556 | 4.14e-11 | 67.0 |
| MS.gene013379.t1 | AT3G28415 | 27.556 | 225 | 137 | 9 | 447 | 650 | 363 | 582 | 4.44e-11 | 67.0 |
| MS.gene013379.t1 | AT1G10680 | 27.322 | 183 | 112 | 5 | 444 | 606 | 375 | 556 | 5.03e-11 | 67.0 |
| MS.gene013379.t1 | AT5G46540 | 23.140 | 242 | 146 | 6 | 408 | 628 | 1000 | 1222 | 5.33e-11 | 66.6 |
Find 160 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATTTGCAGTATTATT+TGG | 0.118260 | 3.4:+86413314 | MS.gene013379:intron |
| TTGGATTTGGCTTTCAATTT+AGG | 0.142201 | 3.4:-86413399 | None:intergenic |
| TACTTTACTAAAATTGATTA+TGG | 0.188943 | 3.4:+86410594 | MS.gene013379:CDS |
| ACCATCAACTCTACTTGTTT+TGG | 0.234739 | 3.4:+86411819 | MS.gene013379:CDS |
| ACGAGCTCAGGCTGTGAATT+TGG | 0.235081 | 3.4:+86408936 | MS.gene013379:CDS |
| AATGGAGGTTGCGGGGAAAT+TGG | 0.247694 | 3.4:+86408828 | MS.gene013379:CDS |
| GGGGTTAGTGTTAGTGTTAA+AGG | 0.261654 | 3.4:-86408350 | None:intergenic |
| GGAGTTGATGGGGAGGCTTT+TGG | 0.263336 | 3.4:+86408891 | MS.gene013379:CDS |
| GGTTAATTGGGAAGTGAAAA+AGG | 0.267296 | 3.4:+86408606 | MS.gene013379:CDS |
| CAGAAATTGGAAAGACTTCT+TGG | 0.282365 | 3.4:+86410290 | MS.gene013379:intron |
| GACGATATTAAAGGACTTCT+TGG | 0.283294 | 3.4:+86410864 | MS.gene013379:CDS |
| GGGTTTGGAGGAACCGGATT+CGG | 0.286299 | 3.4:+86408693 | MS.gene013379:CDS |
| TACCTTTGACATCTTGGATT+TGG | 0.289284 | 3.4:-86413412 | None:intergenic |
| GAAGTTTACCTTTGACATCT+TGG | 0.293270 | 3.4:-86413418 | None:intergenic |
| GTGGGTTTAGTTGGTGTAAA+TGG | 0.300569 | 3.4:+86408637 | MS.gene013379:CDS |
| GGTTTGGAGGAACCGGATTC+GGG | 0.305619 | 3.4:+86408694 | MS.gene013379:CDS |
| TCCAAAACAAGTAGAGTTGA+TGG | 0.315178 | 3.4:-86411820 | None:intergenic |
| ACAGTTAGGAACTTGGATTT+TGG | 0.319199 | 3.4:+86410398 | MS.gene013379:CDS |
| TGAGGGCTCTGTTAATGATT+TGG | 0.320174 | 3.4:+86408870 | MS.gene013379:CDS |
| ACCTCAAGCATTTCTTTAGA+AGG | 0.324032 | 3.4:-86411868 | None:intergenic |
| GATGAGGATTATTGCGGGTT+TGG | 0.324808 | 3.4:+86408678 | MS.gene013379:CDS |
| AGTGTTAGTGTTAAAGGTGT+TGG | 0.329787 | 3.4:-86408344 | None:intergenic |
| TTAGGTGCCGGAGCAAGTTC+TGG | 0.354938 | 3.4:+86409906 | MS.gene013379:CDS |
| AACGGAAACAAATGAAAATC+AGG | 0.359605 | 3.4:+86410339 | MS.gene013379:CDS |
| TTAATGCCTGAGCTTGGTTT+TGG | 0.368496 | 3.4:+86408985 | MS.gene013379:CDS |
| TGTTAATGATTTGGAGTTGA+TGG | 0.369896 | 3.4:+86408879 | MS.gene013379:CDS |
| ACTTTACTAAAATTGATTAT+GGG | 0.374049 | 3.4:+86410595 | MS.gene013379:CDS |
| ACAGGCTGAGGCACTTGATC+TGG | 0.376554 | 3.4:+86410791 | MS.gene013379:intron |
| TAACTATTTCGAGCAGAATC+AGG | 0.381747 | 3.4:+86410672 | MS.gene013379:CDS |
| TTCATTTGTTTCCGTTCAAA+TGG | 0.384165 | 3.4:-86410332 | None:intergenic |
| GTGTTAGTGTTAAAGGTGTT+GGG | 0.385971 | 3.4:-86408343 | None:intergenic |
| TTAATCACATTCCCCGAATC+CGG | 0.391790 | 3.4:-86408706 | None:intergenic |
| AAAGAGGAAATGGAGGTTGC+GGG | 0.392645 | 3.4:+86408820 | MS.gene013379:CDS |
| ATTGCCATTCTTGGTCCAAA+TGG | 0.399808 | 3.4:+86410559 | MS.gene013379:CDS |
| GTACTCTTGCCACATCCATT+TGG | 0.408591 | 3.4:-86410574 | None:intergenic |
| TGGAGGAGTGACGATATTAA+AGG | 0.411374 | 3.4:+86410855 | MS.gene013379:CDS |
| GGTGAGAAAGTGGGTTTAGT+TGG | 0.417873 | 3.4:+86408628 | MS.gene013379:CDS |
| TCATCTAACAACAACAAATC+TGG | 0.426653 | 3.4:-86409612 | None:intergenic |
| CTCCGGTGAGGTCGAGGTGG+TGG | 0.428069 | 3.4:-86408258 | None:intergenic |
| GGCAAATCTTACAATTGAAA+GGG | 0.431561 | 3.4:+86410528 | MS.gene013379:CDS |
| TGATTCTGCTCGAAATAGTT+AGG | 0.432066 | 3.4:-86410670 | None:intergenic |
| TGGCGGATAAACGTGAAGTA+TGG | 0.432387 | 3.4:-86408402 | None:intergenic |
| TAGAGGAAGCTGCAGAGGAC+TGG | 0.433639 | 3.4:+86410835 | MS.gene013379:CDS |
| TTTGAGGTGAAGAATCGATT+GGG | 0.438346 | 3.4:-86408370 | None:intergenic |
| GGCGCTTCAAGCGTTTCATC+TGG | 0.439525 | 3.4:+86408529 | MS.gene013379:CDS |
| TGTAGAGGATTCTGATAGGT+TGG | 0.440022 | 3.4:+86409008 | MS.gene013379:CDS |
| AGTGTTAAAGGTGTTGGGTT+TGG | 0.440467 | 3.4:-86408338 | None:intergenic |
| AGGATAACTTCACCGCTGAT+TGG | 0.444666 | 3.4:-86410628 | None:intergenic |
| TTAGTTGGTGTAAATGGTGC+GGG | 0.446261 | 3.4:+86408643 | MS.gene013379:CDS |
| AGAGAGTTGATAAGCAGGTT+AGG | 0.447090 | 3.4:+86409888 | MS.gene013379:CDS |
| CGATGAGATGAGTGTGGGAT+AGG | 0.448984 | 3.4:-86408315 | None:intergenic |
| TATTGCGGGTTTGGAGGAAC+CGG | 0.451248 | 3.4:+86408687 | MS.gene013379:CDS |
| TCAAGATCAAGGTGATTTGT+AGG | 0.461063 | 3.4:-86409636 | None:intergenic |
| TCAGCGGTGAAGTTATCCTT+GGG | 0.465273 | 3.4:+86410632 | MS.gene013379:CDS |
| TGGAGAAGAATCTTGATGCC+AGG | 0.465875 | 3.4:+86413334 | MS.gene013379:CDS |
| TGTTGTAACAGTTAGGAACT+TGG | 0.467480 | 3.4:+86410391 | MS.gene013379:CDS |
| TTGGTGTAGAGGATTCTGAT+AGG | 0.471996 | 3.4:+86409004 | MS.gene013379:CDS |
| GAGGATTATTGCGGGTTTGG+AGG | 0.476967 | 3.4:+86408681 | MS.gene013379:CDS |
| ATCAGCGGTGAAGTTATCCT+TGG | 0.477715 | 3.4:+86410631 | MS.gene013379:CDS |
| CTTTGTCGTCAAGCTCAGCC+TGG | 0.480481 | 3.4:-86413374 | None:intergenic |
| AGTTTCATCCACGGCGGCGA+TGG | 0.482363 | 3.4:-86408422 | None:intergenic |
| ACATCCATTTGGACCAAGAA+TGG | 0.482881 | 3.4:-86410563 | None:intergenic |
| GTTAATGATTTGGAGTTGAT+GGG | 0.485283 | 3.4:+86408880 | MS.gene013379:CDS |
| TTTGCTTCAGAGACGAGCTC+AGG | 0.488113 | 3.4:+86408924 | MS.gene013379:CDS |
| ACGATATTAAAGGACTTCTT+GGG | 0.489351 | 3.4:+86410865 | MS.gene013379:CDS |
| AGTTAAAGATGGCACTGTGC+AGG | 0.495959 | 3.4:+86412114 | MS.gene013379:CDS |
| AGGCAAATCTTACAATTGAA+AGG | 0.498825 | 3.4:+86410527 | MS.gene013379:CDS |
| GAAGATCTGTTGTAACAGTT+AGG | 0.500389 | 3.4:+86410384 | MS.gene013379:CDS |
| GGGTGTATCCAGGACATTTG+AGG | 0.501010 | 3.4:+86409773 | MS.gene013379:CDS |
| ATATTCTTTCAAAGGCGACT+TGG | 0.503007 | 3.4:+86409811 | MS.gene013379:CDS |
| TTCTCAGTATATTCTTTCAA+AGG | 0.503936 | 3.4:+86409803 | MS.gene013379:CDS |
| ACACAGATGAGGATTATTGC+GGG | 0.504248 | 3.4:+86408673 | MS.gene013379:CDS |
| ATAATTTCCCTCAAATGTCC+TGG | 0.507523 | 3.4:-86409781 | None:intergenic |
| GGATGAACCAACGAATCACT+TGG | 0.511588 | 3.4:+86411840 | MS.gene013379:CDS |
| GGTATATCCAAGTGATTCGT+TGG | 0.512337 | 3.4:-86411847 | None:intergenic |
| CTTCCACTGCTTCCACGCAC+AGG | 0.512959 | 3.4:-86410365 | None:intergenic |
| CCGTGCTTCAACTGCTGAGA+AGG | 0.517152 | 3.4:+86409929 | MS.gene013379:CDS |
| TGAAGATTATCTTAACAAGC+AGG | 0.517743 | 3.4:+86409674 | MS.gene013379:CDS |
| ACTCAATTGTGTCAAGATCA+AGG | 0.517929 | 3.4:-86409647 | None:intergenic |
| GTGCAAAGAATTCAAAGAGA+TGG | 0.519064 | 3.4:+86413596 | MS.gene013379:CDS |
| GGCACTGTGCAGGATTATGC+TGG | 0.519823 | 3.4:+86412124 | MS.gene013379:CDS |
| AGATGAAACGCTTGAAGCGC+CGG | 0.520147 | 3.4:-86408527 | None:intergenic |
| TAAAGAGGAAATGGAGGTTG+CGG | 0.520716 | 3.4:+86408819 | MS.gene013379:CDS |
| AGTAAGTTAATGCCTGAGCT+TGG | 0.521776 | 3.4:+86408979 | MS.gene013379:CDS |
| TGAATGCTCCGGTGAGGTCG+AGG | 0.525529 | 3.4:-86408264 | None:intergenic |
| AGCACGGCCAGAACTTGCTC+CGG | 0.526254 | 3.4:-86409913 | None:intergenic |
| AAAGTGCAGAAGGCGCTTGA+GGG | 0.528862 | 3.4:+86408853 | MS.gene013379:CDS |
| GGTGTATCCAGGACATTTGA+GGG | 0.529834 | 3.4:+86409774 | MS.gene013379:CDS |
| CAAGCAAAACAGAAGTCTAA+AGG | 0.530649 | 3.4:+86413574 | MS.gene013379:CDS |
| TTCCCTGTGCGTGGAAGCAG+TGG | 0.531912 | 3.4:+86410362 | MS.gene013379:CDS |
| TTCAACTGAAGTTTCATCCA+CGG | 0.536805 | 3.4:-86408431 | None:intergenic |
| GACAGTAGAGGAAGCTGCAG+AGG | 0.537160 | 3.4:+86410830 | MS.gene013379:CDS |
| TCGTTCATCGACTGAAGTAT+CGG | 0.540248 | 3.4:-86408479 | None:intergenic |
| GAAAGTGCAGAAGGCGCTTG+AGG | 0.547913 | 3.4:+86408852 | MS.gene013379:CDS |
| AAACTGACATGGGTGTATCC+AGG | 0.548307 | 3.4:+86409763 | MS.gene013379:CDS |
| ATCATGAGATACGGTGATAA+CGG | 0.548364 | 3.4:-86412053 | None:intergenic |
| CTCCACCACCTCGACCTCAC+CGG | 0.548859 | 3.4:+86408256 | MS.gene013379:CDS |
| TCTATTGAGTGGTGGTGAGA+AGG | 0.550123 | 3.4:+86410929 | MS.gene013379:CDS |
| TGTGGGATAGGGTGCGTGGA+AGG | 0.551650 | 3.4:-86408303 | None:intergenic |
| TTGATAAGCAGGTTAGGTGC+CGG | 0.551653 | 3.4:+86409894 | MS.gene013379:CDS |
| AAGGAAGAAGCAAAAGATGC+AGG | 0.553204 | 3.4:+86413543 | MS.gene013379:CDS |
| AGAGTGATTGAAGTTAAAGA+TGG | 0.555267 | 3.4:+86412103 | MS.gene013379:CDS |
| TTGAGGTGAAGAATCGATTG+GGG | 0.556566 | 3.4:-86408369 | None:intergenic |
| TGAAACACAGTATGCTGCAT+GGG | 0.558064 | 3.4:+86409836 | MS.gene013379:CDS |
| GGAGAAGAATCTTGATGCCA+GGG | 0.558623 | 3.4:+86413335 | MS.gene013379:CDS |
| AAACAAGAGAGTTGATAAGC+AGG | 0.561228 | 3.4:+86409883 | MS.gene013379:CDS |
| GTTTGGCGATGAGATGAGTG+TGG | 0.563673 | 3.4:-86408321 | None:intergenic |
| AATTTGAGGTTTCGCAGAGT+AGG | 0.564026 | 3.4:+86408767 | MS.gene013379:CDS |
| TTCATCCACGGCGGCGATGG+CGG | 0.566025 | 3.4:-86408419 | None:intergenic |
| TTTAGTTGGTGTAAATGGTG+CGG | 0.576828 | 3.4:+86408642 | MS.gene013379:CDS |
| AAAATCAGGTTCCCTGTGCG+TGG | 0.579340 | 3.4:+86410353 | MS.gene013379:CDS |
| AGGAAGCTGCAGAGGACTGG+AGG | 0.580227 | 3.4:+86410838 | MS.gene013379:CDS |
| TCTACACCAAAACCAAGCTC+AGG | 0.581292 | 3.4:-86408991 | None:intergenic |
| TTCGCAGAGTAGGACGGTGA+GGG | 0.588910 | 3.4:+86408777 | MS.gene013379:CDS |
| TTCCACTGCTTCCACGCACA+GGG | 0.589830 | 3.4:-86410364 | None:intergenic |
| CGTAAAGTTTCTCTATTGAG+TGG | 0.590268 | 3.4:+86410918 | MS.gene013379:CDS |
| TTGATCTTGACACAATTGAG+TGG | 0.591241 | 3.4:+86409649 | MS.gene013379:CDS |
| ATGATTTGGAGTTGATGGGG+AGG | 0.592271 | 3.4:+86408884 | MS.gene013379:CDS |
| GGCACTTGATCTGGAAAAGA+CGG | 0.593050 | 3.4:+86410800 | MS.gene013379:CDS |
| AGAATCGAGAATGAATGCTC+CGG | 0.594116 | 3.4:-86408275 | None:intergenic |
| TTAATGATTTGGAGTTGATG+GGG | 0.598503 | 3.4:+86408881 | MS.gene013379:CDS |
| GAAATTGGAGAAAGTGCAGA+AGG | 0.599509 | 3.4:+86408843 | MS.gene013379:CDS |
| GATGAGATGAGTGTGGGATA+GGG | 0.605531 | 3.4:-86408314 | None:intergenic |
| AAAGTACCGATCATGAGATA+CGG | 0.606013 | 3.4:-86412062 | None:intergenic |
| GACACAGATGAGGATTATTG+CGG | 0.609481 | 3.4:+86408672 | MS.gene013379:CDS |
| AACAATAAACAATCTAACAC+CGG | 0.610875 | 3.4:+86408508 | MS.gene013379:CDS |
| AAGAGGAAATGGAGGTTGCG+GGG | 0.614608 | 3.4:+86408821 | MS.gene013379:CDS |
| TGAGGTTTCGCAGAGTAGGA+CGG | 0.614833 | 3.4:+86408771 | MS.gene013379:CDS |
| AGCCAAATCCAAGATGTCAA+AGG | 0.614850 | 3.4:+86413410 | MS.gene013379:CDS |
| CCTTCTCAGCAGTTGAAGCA+CGG | 0.617528 | 3.4:-86409929 | None:intergenic |
| GCAAATCTTACAATTGAAAG+GGG | 0.619588 | 3.4:+86410529 | MS.gene013379:CDS |
| TCGTGAGAAATGATAACCAT+CGG | 0.626896 | 3.4:-86409702 | None:intergenic |
| GTTTGGAGGAACCGGATTCG+GGG | 0.627351 | 3.4:+86408695 | MS.gene013379:CDS |
| AAAGTTTCTCTATTGAGTGG+TGG | 0.627890 | 3.4:+86410921 | MS.gene013379:CDS |
| ATCAGGCTGAGAAAGAAGCA+AGG | 0.628611 | 3.4:+86413524 | MS.gene013379:intron |
| TTTATCCGCCATCGCCGCCG+TGG | 0.629787 | 3.4:+86408414 | MS.gene013379:CDS |
| ATTCTTGGTCCAAATGGATG+TGG | 0.633025 | 3.4:+86410565 | MS.gene013379:CDS |
| TGAGTGTGGGATAGGGTGCG+TGG | 0.633289 | 3.4:-86408307 | None:intergenic |
| TAACAAGCAGGATGTGCCGA+TGG | 0.633293 | 3.4:+86409686 | MS.gene013379:CDS |
| CGGGGAAGACGACACAGATG+AGG | 0.633929 | 3.4:+86408662 | MS.gene013379:CDS |
| ATTGGAAAGACTTCTTGGAG+AGG | 0.634177 | 3.4:+86410295 | MS.gene013379:CDS |
| TGGCAGATGAGGATGTGTCT+TGG | 0.636187 | 3.4:+86409051 | MS.gene013379:CDS |
| TAGTAGAAAAGCCATTTGAA+CGG | 0.638546 | 3.4:+86410321 | MS.gene013379:CDS |
| GACGGTGCTTGAGACAGTAG+AGG | 0.647160 | 3.4:+86410818 | MS.gene013379:CDS |
| TTAGTGGTGGATGGCAGATG+AGG | 0.647334 | 3.4:+86409040 | MS.gene013379:CDS |
| TAGTTGGTGTAAATGGTGCG+GGG | 0.649027 | 3.4:+86408644 | MS.gene013379:CDS |
| TTTCGCAGAGTAGGACGGTG+AGG | 0.649818 | 3.4:+86408776 | MS.gene013379:CDS |
| TTTGGCGATGAGATGAGTGT+GGG | 0.650568 | 3.4:-86408320 | None:intergenic |
| GTAATACATTATGCTCCCCA+AGG | 0.655544 | 3.4:-86410648 | None:intergenic |
| TTATCACCGTATCTCATGAT+CGG | 0.661904 | 3.4:+86412056 | MS.gene013379:CDS |
| ACCTTCTAAAGAAATGCTTG+AGG | 0.662881 | 3.4:+86411867 | MS.gene013379:CDS |
| TTGAAACACAGTATGCTGCA+TGG | 0.664460 | 3.4:+86409835 | MS.gene013379:CDS |
| GGAGGCAATAAACGAGTACG+AGG | 0.681962 | 3.4:+86412027 | MS.gene013379:intron |
| CGAGAATGAATGCTCCGGTG+AGG | 0.684460 | 3.4:-86408270 | None:intergenic |
| CAGCGGTGAAGTTATCCTTG+GGG | 0.685607 | 3.4:+86410633 | MS.gene013379:CDS |
| GGTTTAGAGAAGCCAATCAG+CGG | 0.693977 | 3.4:+86410616 | MS.gene013379:CDS |
| ATGCTCCGGTGAGGTCGAGG+TGG | 0.714725 | 3.4:-86408261 | None:intergenic |
| AACTGAAGTTTCATCCACGG+CGG | 0.723455 | 3.4:-86408428 | None:intergenic |
| AAAATTGTGGAAACTGACAT+GGG | 0.723967 | 3.4:+86409753 | MS.gene013379:CDS |
| GAGGCAATAAACGAGTACGA+GGG | 0.765833 | 3.4:+86412028 | MS.gene013379:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCATTATATACAAAAA+TGG | - | chr3.4:86413228-86413247 | None:intergenic | 10.0% |
| !! | GATTTATCATTTAAAAATAA+CGG | - | chr3.4:86409423-86409442 | None:intergenic | 10.0% |
| !! | TTAAATGATAAATCAATAAA+GGG | + | chr3.4:86409429-86409448 | MS.gene013379:intron | 10.0% |
| !! | TTTAAATGATAAATCAATAA+AGG | + | chr3.4:86409428-86409447 | MS.gene013379:intron | 10.0% |
| !!! | AAACATTAATTTTTACAATA+CGG | - | chr3.4:86410213-86410232 | None:intergenic | 10.0% |
| !!! | TTTTTTTTACTAAAATTAAG+GGG | + | chr3.4:86412926-86412945 | MS.gene013379:intron | 10.0% |
| !! | AAAAAGAATACAAATGATTA+TGG | + | chr3.4:86409367-86409386 | MS.gene013379:intron | 15.0% |
| !! | AAGTATATTTAAACAATCTA+TGG | - | chr3.4:86412207-86412226 | None:intergenic | 15.0% |
| !! | AATATTAGAAAAACTTACAA+AGG | + | chr3.4:86408565-86408584 | MS.gene013379:CDS | 15.0% |
| !! | ACTTTACTAAAATTGATTAT+GGG | + | chr3.4:86410595-86410614 | MS.gene013379:CDS | 15.0% |
| !! | AGTATATTTAAACAATCTAT+GGG | - | chr3.4:86412206-86412225 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAGAAAACATT+AGG | - | chr3.4:86411951-86411970 | None:intergenic | 15.0% |
| !! | TACTTTACTAAAATTGATTA+TGG | + | chr3.4:86410594-86410613 | MS.gene013379:CDS | 15.0% |
| !! | TATTTAAGTGACTAATATTA+AGG | - | chr3.4:86410130-86410149 | None:intergenic | 15.0% |
| !! | TTTAAAGAAATTTAAGAAAC+AGG | + | chr3.4:86411240-86411259 | MS.gene013379:intron | 15.0% |
| !!! | ATTGATTTATTTGAAAAATC+AGG | + | chr3.4:86413507-86413526 | MS.gene013379:intron | 15.0% |
| !!! | TAAATGTATTTGACAATTTT+GGG | + | chr3.4:86411346-86411365 | MS.gene013379:intron | 15.0% |
| !!! | TTCTTAAATTTCTTTAAAGA+CGG | - | chr3.4:86411238-86411257 | None:intergenic | 15.0% |
| !!! | TTCTTTTAAGTAAATAACAT+AGG | - | chr3.4:86410248-86410267 | None:intergenic | 15.0% |
| !! | AAATTAAAACAGAATACATC+AGG | - | chr3.4:86412571-86412590 | None:intergenic | 20.0% |
| !! | AATGATTATGGTTAGTAATT+AGG | + | chr3.4:86409379-86409398 | MS.gene013379:intron | 20.0% |
| !! | ATGATTTATTCCTGATAAAA+AGG | + | chr3.4:86411459-86411478 | MS.gene013379:intron | 20.0% |
| !! | CATGTTTGTTTATTGTTATA+GGG | + | chr3.4:86413271-86413290 | MS.gene013379:intron | 20.0% |
| !! | TAAATTATACCCTCAAAATT+AGG | - | chr3.4:86413109-86413128 | None:intergenic | 20.0% |
| !! | TGAAAATTTGCAGTATTATT+TGG | + | chr3.4:86413314-86413333 | MS.gene013379:intron | 20.0% |
| !! | TGAACATTAAATACAGATAA+AGG | - | chr3.4:86411914-86411933 | None:intergenic | 20.0% |
| !! | TGATTTATTCCTGATAAAAA+GGG | + | chr3.4:86411460-86411479 | MS.gene013379:intron | 20.0% |
| !! | TTGAATCATTCAATGAAAAA+TGG | - | chr3.4:86413168-86413187 | None:intergenic | 20.0% |
| !!! | AAAAACGCAATTTTCATATT+TGG | - | chr3.4:86408739-86408758 | None:intergenic | 20.0% |
| !!! | AAAGATTTTCAAAATGTCTA+AGG | - | chr3.4:86411160-86411179 | None:intergenic | 20.0% |
| !!! | AAAGTTTTGAAATGAAGAAT+TGG | - | chr3.4:86410741-86410760 | None:intergenic | 20.0% |
| !!! | ATTAATTTTTACAATACGGA+AGG | - | chr3.4:86410209-86410228 | None:intergenic | 20.0% |
| !!! | ATTGCAATTTACAACTATTT+TGG | - | chr3.4:86410182-86410201 | None:intergenic | 20.0% |
| !!! | CCATATTTTACTTTTTGAAA+GGG | - | chr3.4:86412683-86412702 | None:intergenic | 20.0% |
| !!! | GTAAATGTATTTGACAATTT+TGG | + | chr3.4:86411345-86411364 | MS.gene013379:intron | 20.0% |
| !!! | TCCATATTTTACTTTTTGAA+AGG | - | chr3.4:86412684-86412703 | None:intergenic | 20.0% |
| !!! | TGATGTATTCTGTTTTAATT+TGG | + | chr3.4:86412570-86412589 | MS.gene013379:intron | 20.0% |
| ! | AAATAAAGTGAAGAATCTGA+GGG | - | chr3.4:86412525-86412544 | None:intergenic | 25.0% |
| ! | AAATAACTTAGACGATCAAA+CGG | + | chr3.4:86412845-86412864 | MS.gene013379:intron | 25.0% |
| ! | AAATCTAGTTGTTGTCTAAA+AGG | - | chr3.4:86409336-86409355 | None:intergenic | 25.0% |
| ! | AACAATAAACAAACATGCAT+TGG | - | chr3.4:86413268-86413287 | None:intergenic | 25.0% |
| ! | AACAATAAACAATCTAACAC+CGG | + | chr3.4:86408508-86408527 | MS.gene013379:CDS | 25.0% |
| ! | AATCTAGTTGTTGTCTAAAA+GGG | - | chr3.4:86409335-86409354 | None:intergenic | 25.0% |
| ! | ACTTAAATAACCCAAAAATG+CGG | + | chr3.4:86410141-86410160 | MS.gene013379:intron | 25.0% |
| ! | AGGTAAGAAAAAAAATGAGA+CGG | - | chr3.4:86411894-86411913 | None:intergenic | 25.0% |
| ! | AGTATATTGTGTATGTGTAT+AGG | + | chr3.4:86409117-86409136 | MS.gene013379:intron | 25.0% |
| ! | ATAATAAGATGTGAGAAATG+AGG | - | chr3.4:86412470-86412489 | None:intergenic | 25.0% |
| ! | ATATAATGCAACACTATTAG+GGG | + | chr3.4:86411739-86411758 | MS.gene013379:intron | 25.0% |
| ! | ATGTAAAATTCCTATCACAA+AGG | - | chr3.4:86412598-86412617 | None:intergenic | 25.0% |
| ! | CATATAATGCAACACTATTA+GGG | + | chr3.4:86411738-86411757 | MS.gene013379:intron | 25.0% |
| ! | CATGTAATACTAATGATCAA+TGG | - | chr3.4:86412302-86412321 | None:intergenic | 25.0% |
| ! | CCCTTTCAAAAAGTAAAATA+TGG | + | chr3.4:86412680-86412699 | MS.gene013379:intron | 25.0% |
| ! | CTTAAACTTTGTTAGACATA+TGG | - | chr3.4:86410104-86410123 | None:intergenic | 25.0% |
| ! | GCATGTTTGTTTATTGTTAT+AGG | + | chr3.4:86413270-86413289 | MS.gene013379:intron | 25.0% |
| ! | TATATGCATTTAGTGAGAAA+GGG | - | chr3.4:86411724-86411743 | None:intergenic | 25.0% |
| ! | TCAACTATGTACAAAAATTG+TGG | + | chr3.4:86409740-86409759 | MS.gene013379:CDS | 25.0% |
| ! | TGAATGATTCAATAGACATA+TGG | + | chr3.4:86413176-86413195 | MS.gene013379:intron | 25.0% |
| ! | TGATTTATAATTCTTCTACC+AGG | + | chr3.4:86412006-86412025 | MS.gene013379:intron | 25.0% |
| ! | TTAAGAAAATTGAGGAATGA+GGG | - | chr3.4:86412404-86412423 | None:intergenic | 25.0% |
| ! | TTAAGAAACAGGAACTAAAA+TGG | + | chr3.4:86411251-86411270 | MS.gene013379:intron | 25.0% |
| ! | TTATATATCTAGTGCTATGA+TGG | + | chr3.4:86410078-86410097 | MS.gene013379:intron | 25.0% |
| ! | TTATATGCATTTAGTGAGAA+AGG | - | chr3.4:86411725-86411744 | None:intergenic | 25.0% |
| ! | TTCTCAGTATATTCTTTCAA+AGG | + | chr3.4:86409803-86409822 | MS.gene013379:CDS | 25.0% |
| !! | AATCTCAATCCTTATGATTT+TGG | - | chr3.4:86410051-86410070 | None:intergenic | 25.0% |
| !! | ATATTGTTCCATGTTTTACT+AGG | + | chr3.4:86411765-86411784 | MS.gene013379:intron | 25.0% |
| !! | ATCTCAATCCTTATGATTTT+GGG | - | chr3.4:86410050-86410069 | None:intergenic | 25.0% |
| !! | TCAGATTCTTCACTTTATTT+GGG | + | chr3.4:86412525-86412544 | MS.gene013379:intron | 25.0% |
| !!! | AAAAACTTACAAAGGTGTTA+CGG | + | chr3.4:86408573-86408592 | MS.gene013379:CDS | 25.0% |
| !!! | AGCTTATTTCTATGATTGAA+TGG | + | chr3.4:86411036-86411055 | MS.gene013379:intron | 25.0% |
| !!! | AGTCAAAAGTACTCATTAAA+TGG | + | chr3.4:86410008-86410027 | MS.gene013379:intron | 25.0% |
| !!! | ATCATTTAAAAATAACGGAC+TGG | - | chr3.4:86409418-86409437 | None:intergenic | 25.0% |
| !!! | ATTTATGAGTGCTTTTAAAG+AGG | + | chr3.4:86408804-86408823 | MS.gene013379:CDS | 25.0% |
| !!! | CAATTTTCTAAAATCAGTGT+CGG | - | chr3.4:86409192-86409211 | None:intergenic | 25.0% |
| !!! | GATTCTTTTTCAACTTGTTT+TGG | + | chr3.4:86411323-86411342 | MS.gene013379:intron | 25.0% |
| !!! | GTATTACATGTGTTTTTAGT+TGG | + | chr3.4:86412312-86412331 | MS.gene013379:intron | 25.0% |
| !!! | GTCAAAAGTACTCATTAAAT+GGG | + | chr3.4:86410009-86410028 | MS.gene013379:intron | 25.0% |
| !!! | TTTTTTTTCAACAGCATATC+TGG | + | chr3.4:86412633-86412652 | MS.gene013379:intron | 25.0% |
| AAAAATTGTGGAAACTGACA+TGG | + | chr3.4:86409752-86409771 | MS.gene013379:CDS | 30.0% | |
| AAAACAGAATACATCAGGTA+GGG | - | chr3.4:86412566-86412585 | None:intergenic | 30.0% | |
| AAAAGAAAACATTAGGCTGA+TGG | - | chr3.4:86411944-86411963 | None:intergenic | 30.0% | |
| AAAATTGTGGAAACTGACAT+GGG | + | chr3.4:86409753-86409772 | MS.gene013379:CDS | 30.0% | |
| AAACTATTTACATGCTTCCA+TGG | + | chr3.4:86411649-86411668 | MS.gene013379:intron | 30.0% | |
| AAAGAAAACATTAGGCTGAT+GGG | - | chr3.4:86411943-86411962 | None:intergenic | 30.0% | |
| AACAAACAACCACATTTCAA+AGG | - | chr3.4:86411191-86411210 | None:intergenic | 30.0% | |
| AACGGAAACAAATGAAAATC+AGG | + | chr3.4:86410339-86410358 | MS.gene013379:CDS | 30.0% | |
| AATCATCATTTGCATCTAGA+TGG | - | chr3.4:86412366-86412385 | None:intergenic | 30.0% | |
| ACGATATTAAAGGACTTCTT+GGG | + | chr3.4:86410865-86410884 | MS.gene013379:CDS | 30.0% | |
| AGAGTGATTGAAGTTAAAGA+TGG | + | chr3.4:86412103-86412122 | MS.gene013379:CDS | 30.0% | |
| AGGCAAATCTTACAATTGAA+AGG | + | chr3.4:86410527-86410546 | MS.gene013379:CDS | 30.0% | |
| CAAATAAAGTGAAGAATCTG+AGG | - | chr3.4:86412526-86412545 | None:intergenic | 30.0% | |
| CAGCAATATCATCTAATTTG+CGG | - | chr3.4:86411130-86411149 | None:intergenic | 30.0% | |
| CATTCAATGAAAAATGGCTT+CGG | - | chr3.4:86413162-86413181 | None:intergenic | 30.0% | |
| CTCAGATTCTTCACTTTATT+TGG | + | chr3.4:86412524-86412543 | MS.gene013379:intron | 30.0% | |
| GCAAATCTTACAATTGAAAG+GGG | + | chr3.4:86410529-86410548 | MS.gene013379:CDS | 30.0% | |
| GCATATAATGCAACACTATT+AGG | + | chr3.4:86411737-86411756 | MS.gene013379:intron | 30.0% | |
| GGCAAATCTTACAATTGAAA+GGG | + | chr3.4:86410528-86410547 | MS.gene013379:CDS | 30.0% | |
| GTATATGTGACAACAGAAAT+TGG | + | chr3.4:86410277-86410296 | MS.gene013379:intron | 30.0% | |
| GTTAAGAAAATTGAGGAATG+AGG | - | chr3.4:86412405-86412424 | None:intergenic | 30.0% | |
| GTTAATTGGGAAGTGAAAAA+GGG | + | chr3.4:86408607-86408626 | MS.gene013379:CDS | 30.0% | |
| TAAAACAGAATACATCAGGT+AGG | - | chr3.4:86412567-86412586 | None:intergenic | 30.0% | |
| TAGTAGAAAAGCCATTTGAA+CGG | + | chr3.4:86410321-86410340 | MS.gene013379:CDS | 30.0% | |
| TCAGTCTTTCATTTCATAAG+TGG | + | chr3.4:86412749-86412768 | MS.gene013379:intron | 30.0% | |
| TCATCTAACAACAACAAATC+TGG | - | chr3.4:86409615-86409634 | None:intergenic | 30.0% | |
| TCTGTTGTCACATATACATA+AGG | - | chr3.4:86410274-86410293 | None:intergenic | 30.0% | |
| TCTTTCATTTCATAAGTGGA+AGG | + | chr3.4:86412753-86412772 | MS.gene013379:intron | 30.0% | |
| TGAAGATTATCTTAACAAGC+AGG | + | chr3.4:86409674-86409693 | MS.gene013379:CDS | 30.0% | |
| TTCATTTGTTTCCGTTCAAA+TGG | - | chr3.4:86410335-86410354 | None:intergenic | 30.0% | |
| TTGACTGAGAAAATGCTATT+TGG | + | chr3.4:86410704-86410723 | MS.gene013379:intron | 30.0% | |
| TTTATAATTCTTCTACCAGG+AGG | + | chr3.4:86412009-86412028 | MS.gene013379:intron | 30.0% | |
| TTTCATAAGTGGAAGGATAT+AGG | + | chr3.4:86412760-86412779 | MS.gene013379:intron | 30.0% | |
| ! | AATCAATATTAGTCTGTCCT+TGG | - | chr3.4:86411991-86412010 | None:intergenic | 30.0% |
| ! | AGCAATATCATCTAATTTGC+GGG | - | chr3.4:86411129-86411148 | None:intergenic | 30.0% |
| ! | CTAGATGCAAATGATGATTT+TGG | + | chr3.4:86412367-86412386 | MS.gene013379:intron | 30.0% |
| ! | GTTAATGATTTGGAGTTGAT+GGG | + | chr3.4:86408880-86408899 | MS.gene013379:CDS | 30.0% |
| ! | TAATTTGGTTCCTTTGTGAT+AGG | + | chr3.4:86412585-86412604 | MS.gene013379:intron | 30.0% |
| ! | TGTTAATGATTTGGAGTTGA+TGG | + | chr3.4:86408879-86408898 | MS.gene013379:CDS | 30.0% |
| !! | ATAACCAATGTTACTTTGCA+AGG | + | chr3.4:86409499-86409518 | MS.gene013379:intron | 30.0% |
| !! | GACACTTAGTTTTCAATTTC+AGG | + | chr3.4:86409587-86409606 | MS.gene013379:intron | 30.0% |
| !! | TTAATGATTTGGAGTTGATG+GGG | + | chr3.4:86408881-86408900 | MS.gene013379:CDS | 30.0% |
| !! | TTGGATTTGGCTTTCAATTT+AGG | - | chr3.4:86413402-86413421 | None:intergenic | 30.0% |
| !!! | AGTATGGTTGAGTTTTTTTG+AGG | - | chr3.4:86408389-86408408 | None:intergenic | 30.0% |
| !!! | GGTTTTGAAAGAGGTTAATT+GGG | + | chr3.4:86408594-86408613 | MS.gene013379:CDS | 30.0% |
| !!! | TGTGTTTTTAGTTGGATTCT+TGG | + | chr3.4:86412320-86412339 | MS.gene013379:intron | 30.0% |
| AAAACTCTGTATCCAATCCA+AGG | + | chr3.4:86411971-86411990 | MS.gene013379:intron | 35.0% | |
| AAACTTCTGTGAAACTCGTA+TGG | + | chr3.4:86413434-86413453 | MS.gene013379:intron | 35.0% | |
| AAAGTTTCTCTATTGAGTGG+TGG | + | chr3.4:86410921-86410940 | MS.gene013379:CDS | 35.0% | |
| AAATGAAGAATTGGAACCGA+TGG | - | chr3.4:86410732-86410751 | None:intergenic | 35.0% | |
| ACCTCAAGCATTTCTTTAGA+AGG | - | chr3.4:86411871-86411890 | None:intergenic | 35.0% | |
| ACTCAATTGTGTCAAGATCA+AGG | - | chr3.4:86409650-86409669 | None:intergenic | 35.0% | |
| ACTTAGATTTGACACTTGAG+AGG | + | chr3.4:86412876-86412895 | MS.gene013379:intron | 35.0% | |
| AGATTGGACATGTCTTCAAT+TGG | + | chr3.4:86409264-86409283 | MS.gene013379:intron | 35.0% | |
| ATAATTTCCCTCAAATGTCC+TGG | - | chr3.4:86409784-86409803 | None:intergenic | 35.0% | |
| ATATTCTTTCAAAGGCGACT+TGG | + | chr3.4:86409811-86409830 | MS.gene013379:CDS | 35.0% | |
| ATCATGAGATACGGTGATAA+CGG | - | chr3.4:86412056-86412075 | None:intergenic | 35.0% | |
| ATGGGACACAAAAAAGCTAA+TGG | - | chr3.4:86412188-86412207 | None:intergenic | 35.0% | |
| CAAGCAAAACAGAAGTCTAA+AGG | + | chr3.4:86413574-86413593 | MS.gene013379:CDS | 35.0% | |
| CAGAAATTGGAAAGACTTCT+TGG | + | chr3.4:86410290-86410309 | MS.gene013379:intron | 35.0% | |
| CCAATTCTCCCAAAATCATA+AGG | + | chr3.4:86410039-86410058 | MS.gene013379:intron | 35.0% | |
| CGTAAAGTTTCTCTATTGAG+TGG | + | chr3.4:86410918-86410937 | MS.gene013379:CDS | 35.0% | |
| CTTAGATTTGACACTTGAGA+GGG | + | chr3.4:86412877-86412896 | MS.gene013379:intron | 35.0% | |
| GAAGATCTGTTGTAACAGTT+AGG | + | chr3.4:86410384-86410403 | MS.gene013379:CDS | 35.0% | |
| GAAGTTTACCTTTGACATCT+TGG | - | chr3.4:86413421-86413440 | None:intergenic | 35.0% | |
| GACGATATTAAAGGACTTCT+TGG | + | chr3.4:86410864-86410883 | MS.gene013379:CDS | 35.0% | |
| GCGGATAGTTAAGAAAATTG+AGG | - | chr3.4:86412412-86412431 | None:intergenic | 35.0% | |
| GGAGAAAAAATTGCCATTCT+TGG | + | chr3.4:86410550-86410569 | MS.gene013379:CDS | 35.0% | |
| GGTTAATTGGGAAGTGAAAA+AGG | + | chr3.4:86408606-86408625 | MS.gene013379:CDS | 35.0% | |
| GTGCAAAGAATTCAAAGAGA+TGG | + | chr3.4:86413596-86413615 | MS.gene013379:CDS | 35.0% | |
| TAACTATTTCGAGCAGAATC+AGG | + | chr3.4:86410672-86410691 | MS.gene013379:CDS | 35.0% | |
| TAATGAAGTGAACAGTCTTG+TGG | + | chr3.4:86412708-86412727 | MS.gene013379:intron | 35.0% | |
| TACACCTTGCAAAGTAACAT+TGG | - | chr3.4:86409506-86409525 | None:intergenic | 35.0% | |
| TACCTTTGACATCTTGGATT+TGG | - | chr3.4:86413415-86413434 | None:intergenic | 35.0% | |
| TATATCAGCATTACAGCCTA+TGG | - | chr3.4:86409482-86409501 | None:intergenic | 35.0% | |
| TCACGAAGTTACTATCAACA+TGG | - | chr3.4:86413132-86413151 | None:intergenic | 35.0% | |
| TCAGGTAGGGACTAATAATT+TGG | - | chr3.4:86412553-86412572 | None:intergenic | 35.0% | |
| TCCAAAACAAGTAGAGTTGA+TGG | - | chr3.4:86411823-86411842 | None:intergenic | 35.0% | |
| TCCTGATAAAAAGGGAAATG+TGG | + | chr3.4:86411468-86411487 | MS.gene013379:intron | 35.0% | |
| TCGTGAGAAATGATAACCAT+CGG | - | chr3.4:86409705-86409724 | None:intergenic | 35.0% | |
| TGATTCTGCTCGAAATAGTT+AGG | - | chr3.4:86410673-86410692 | None:intergenic | 35.0% | |
| TGTTGTAACAGTTAGGAACT+TGG | + | chr3.4:86410391-86410410 | MS.gene013379:CDS | 35.0% | |
| TTATCACCGTATCTCATGAT+CGG | + | chr3.4:86412056-86412075 | MS.gene013379:CDS | 35.0% | |
| TTCAACTGAAGTTTCATCCA+CGG | - | chr3.4:86408434-86408453 | None:intergenic | 35.0% | |
| TTGATCTTGACACAATTGAG+TGG | + | chr3.4:86409649-86409668 | MS.gene013379:CDS | 35.0% | |
| ! | AACACTACTACCGCATTTTT+GGG | - | chr3.4:86410154-86410173 | None:intergenic | 35.0% |
| ! | ACAGTTAGGAACTTGGATTT+TGG | + | chr3.4:86410398-86410417 | MS.gene013379:CDS | 35.0% |
| ! | ACCACATTTCCCTTTTTATC+AGG | - | chr3.4:86411472-86411491 | None:intergenic | 35.0% |
| ! | ACCATCAACTCTACTTGTTT+TGG | + | chr3.4:86411819-86411838 | MS.gene013379:CDS | 35.0% |
| ! | ACCTTCTAAAGAAATGCTTG+AGG | + | chr3.4:86411867-86411886 | MS.gene013379:CDS | 35.0% |
| ! | AGTGTTAGTGTTAAAGGTGT+TGG | - | chr3.4:86408347-86408366 | None:intergenic | 35.0% |
| ! | ATATTAGTCTGTCCTTGGAT+TGG | - | chr3.4:86411986-86412005 | None:intergenic | 35.0% |
| ! | ATGCGGTTACCTAATTTTGA+GGG | + | chr3.4:86413097-86413116 | MS.gene013379:intron | 35.0% |
| ! | ATGGCTATGATGATGTTAAG+AGG | + | chr3.4:86411270-86411289 | MS.gene013379:intron | 35.0% |
| ! | GAGTTTGAATGTGAAAGTGT+TGG | + | chr3.4:86409554-86409573 | MS.gene013379:intron | 35.0% |
| ! | TATGCGGTTACCTAATTTTG+AGG | + | chr3.4:86413096-86413115 | MS.gene013379:intron | 35.0% |
| ! | TCAAGATCAAGGTGATTTGT+AGG | - | chr3.4:86409639-86409658 | None:intergenic | 35.0% |
| ! | TCTTGGCAAGATTTTACTTC+AGG | + | chr3.4:86409068-86409087 | MS.gene013379:CDS | 35.0% |
| ! | TTGCCTTGTTGAAAAGTTTC+TGG | - | chr3.4:86410513-86410532 | None:intergenic | 35.0% |
| ! | TTGCTATTAAGCTCTCTTAG+TGG | + | chr3.4:86412956-86412975 | MS.gene013379:intron | 35.0% |
| ! | TTTAGTTGGTGTAAATGGTG+CGG | + | chr3.4:86408642-86408661 | MS.gene013379:CDS | 35.0% |
| ! | TTTGAGGTGAAGAATCGATT+GGG | - | chr3.4:86408373-86408392 | None:intergenic | 35.0% |
| !! | AAAATGCTATTTGGTGCCAT+CGG | + | chr3.4:86410713-86410732 | MS.gene013379:intron | 35.0% |
| !! | AAACAAGAGAGTTGATAAGC+AGG | + | chr3.4:86409883-86409902 | MS.gene013379:CDS | 35.0% |
| !! | AAAGTACCGATCATGAGATA+CGG | - | chr3.4:86412065-86412084 | None:intergenic | 35.0% |
| !! | ATGTGTTCCATTTTTCGTCA+AGG | + | chr3.4:86413070-86413089 | MS.gene013379:intron | 35.0% |
| !! | CCTTATGATTTTGGGAGAAT+TGG | - | chr3.4:86410042-86410061 | None:intergenic | 35.0% |
| !! | GAGTGCTTTTAAAGAGGAAA+TGG | + | chr3.4:86408810-86408829 | MS.gene013379:CDS | 35.0% |
| !! | GTGTTAGTGTTAAAGGTGTT+GGG | - | chr3.4:86408346-86408365 | None:intergenic | 35.0% |
| !! | TGCTTTTAAAGAGGAAATGG+AGG | + | chr3.4:86408813-86408832 | MS.gene013379:CDS | 35.0% |
| !!! | CGGTTTTGAAAGAGGTTAAT+TGG | + | chr3.4:86408593-86408612 | MS.gene013379:CDS | 35.0% |
| !!! | GAAAATTGCGTTTTTGAGTC+AGG | + | chr3.4:86408744-86408763 | MS.gene013379:CDS | 35.0% |
| !!! | GTTTTTGAGTCAGGAATTTG+AGG | + | chr3.4:86408753-86408772 | MS.gene013379:CDS | 35.0% |
| !!! | TTTTGAGGTGAAGAATCGAT+TGG | - | chr3.4:86408374-86408393 | None:intergenic | 35.0% |
| !!! | TTTTGCTCTCCTTTGAAATG+TGG | + | chr3.4:86411179-86411198 | MS.gene013379:intron | 35.0% |
| AAGGAAGAAGCAAAAGATGC+AGG | + | chr3.4:86413543-86413562 | MS.gene013379:CDS | 40.0% | |
| ACACAAAAAAGCTAATGGCG+GGG | - | chr3.4:86412183-86412202 | None:intergenic | 40.0% | |
| ACACAGATGAGGATTATTGC+GGG | + | chr3.4:86408673-86408692 | MS.gene013379:CDS | 40.0% | |
| ACATCCATTTGGACCAAGAA+TGG | - | chr3.4:86410566-86410585 | None:intergenic | 40.0% | |
| AGAATCGAGAATGAATGCTC+CGG | - | chr3.4:86408278-86408297 | None:intergenic | 40.0% | |
| AGAGATGAGAGGTAAAACAG+AGG | - | chr3.4:86411557-86411576 | None:intergenic | 40.0% | |
| AGCCAAATCCAAGATGTCAA+AGG | + | chr3.4:86413410-86413429 | MS.gene013379:CDS | 40.0% | |
| AGTAAGTTAATGCCTGAGCT+TGG | + | chr3.4:86408979-86408998 | MS.gene013379:CDS | 40.0% | |
| AGTGAAAAAGGGTGAGAAAG+TGG | + | chr3.4:86408618-86408637 | MS.gene013379:CDS | 40.0% | |
| ATCAACCATCTCAATGTTCG+AGG | - | chr3.4:86411306-86411325 | None:intergenic | 40.0% | |
| ATCCATACACCTGCATTCTT+TGG | + | chr3.4:86411373-86411392 | MS.gene013379:intron | 40.0% | |
| ATGAAATGCCCAAAGAATGC+AGG | - | chr3.4:86411385-86411404 | None:intergenic | 40.0% | |
| ATGAACAAGATCGCCAAGAA+GGG | - | chr3.4:86412441-86412460 | None:intergenic | 40.0% | |
| ATTCTTGGTCCAAATGGATG+TGG | + | chr3.4:86410565-86410584 | MS.gene013379:CDS | 40.0% | |
| ATTGCCATTCTTGGTCCAAA+TGG | + | chr3.4:86410559-86410578 | MS.gene013379:CDS | 40.0% | |
| ATTGGAAAGACTTCTTGGAG+AGG | + | chr3.4:86410295-86410314 | MS.gene013379:CDS | 40.0% | |
| CATACAGCCTTGACGAAAAA+TGG | - | chr3.4:86413080-86413099 | None:intergenic | 40.0% | |
| CTGCATCTATGCTTAACCAT+AGG | + | chr3.4:86409463-86409482 | MS.gene013379:intron | 40.0% | |
| GACACAAAAAAGCTAATGGC+GGG | - | chr3.4:86412184-86412203 | None:intergenic | 40.0% | |
| GACACAGATGAGGATTATTG+CGG | + | chr3.4:86408672-86408691 | MS.gene013379:CDS | 40.0% | |
| GAGAGCTTAATAGCAACAGT+TGG | - | chr3.4:86412952-86412971 | None:intergenic | 40.0% | |
| GATAGTTGAAGCAGGTTAAC+TGG | + | chr3.4:86412244-86412263 | MS.gene013379:intron | 40.0% | |
| GGACACAAAAAAGCTAATGG+CGG | - | chr3.4:86412185-86412204 | None:intergenic | 40.0% | |
| GGTATATCCAAGTGATTCGT+TGG | - | chr3.4:86411850-86411869 | None:intergenic | 40.0% | |
| GTAATACATTATGCTCCCCA+AGG | - | chr3.4:86410651-86410670 | None:intergenic | 40.0% | |
| GTGAAAAAGGGTGAGAAAGT+GGG | + | chr3.4:86408619-86408638 | MS.gene013379:CDS | 40.0% | |
| GTTCATAATCTAAGTTGCGC+TGG | + | chr3.4:86413045-86413064 | MS.gene013379:intron | 40.0% | |
| TAAAGAGGAAATGGAGGTTG+CGG | + | chr3.4:86408819-86408838 | MS.gene013379:CDS | 40.0% | |
| TATTAAGCTCTCTTAGTGGC+AGG | + | chr3.4:86412960-86412979 | MS.gene013379:intron | 40.0% | |
| TCCATACACCTGCATTCTTT+GGG | + | chr3.4:86411374-86411393 | MS.gene013379:intron | 40.0% | |
| TGAAACACAGTATGCTGCAT+GGG | + | chr3.4:86409836-86409855 | MS.gene013379:CDS | 40.0% | |
| TGAGGGCTCTGTTAATGATT+TGG | + | chr3.4:86408870-86408889 | MS.gene013379:CDS | 40.0% | |
| TGGAGGAGTGACGATATTAA+AGG | + | chr3.4:86410855-86410874 | MS.gene013379:CDS | 40.0% | |
| TGGTGGTATTGCAAATTGCA+TGG | + | chr3.4:86409297-86409316 | MS.gene013379:intron | 40.0% | |
| TGTAGAGGATTCTGATAGGT+TGG | + | chr3.4:86409008-86409027 | MS.gene013379:CDS | 40.0% | |
| TTAAGCATAGATGCAGCCTA+AGG | - | chr3.4:86409459-86409478 | None:intergenic | 40.0% | |
| TTAATCACATTCCCCGAATC+CGG | - | chr3.4:86408709-86408728 | None:intergenic | 40.0% | |
| TTGAAACACAGTATGCTGCA+TGG | + | chr3.4:86409835-86409854 | MS.gene013379:CDS | 40.0% | |
| TTGAGGTGAAGAATCGATTG+GGG | - | chr3.4:86408372-86408391 | None:intergenic | 40.0% | |
| TTGATTTAGTCAACAGGCTG+AGG | + | chr3.4:86410779-86410798 | MS.gene013379:intron | 40.0% | |
| TTGGTGTAGAGGATTCTGAT+AGG | + | chr3.4:86409004-86409023 | MS.gene013379:CDS | 40.0% | |
| ! | AACTGCTGAGAAGGTATATG+TGG | + | chr3.4:86409938-86409957 | MS.gene013379:intron | 40.0% |
| ! | AATTTGAGGTTTCGCAGAGT+AGG | + | chr3.4:86408767-86408786 | MS.gene013379:CDS | 40.0% |
| ! | AGACATATGGTGATGCTGTA+AGG | + | chr3.4:86413189-86413208 | MS.gene013379:intron | 40.0% |
| ! | ATCAATAAAGGGCACACCTT+AGG | + | chr3.4:86409440-86409459 | MS.gene013379:intron | 40.0% |
| ! | CAACACTACTACCGCATTTT+TGG | - | chr3.4:86410155-86410174 | None:intergenic | 40.0% |
| ! | GAAATTGGAGAAAGTGCAGA+AGG | + | chr3.4:86408843-86408862 | MS.gene013379:CDS | 40.0% |
| ! | GACATATGGTGATGCTGTAA+GGG | + | chr3.4:86413190-86413209 | MS.gene013379:intron | 40.0% |
| ! | GGGGTTAGTGTTAGTGTTAA+AGG | - | chr3.4:86408353-86408372 | None:intergenic | 40.0% |
| ! | GTGCCAGAAACTTTTCAACA+AGG | + | chr3.4:86410507-86410526 | MS.gene013379:intron | 40.0% |
| ! | GTGGGTTTAGTTGGTGTAAA+TGG | + | chr3.4:86408637-86408656 | MS.gene013379:CDS | 40.0% |
| ! | GTTCCATGTTTTACTAGGCA+CGG | + | chr3.4:86411770-86411789 | MS.gene013379:intron | 40.0% |
| ! | TAGTCCTTTTGATCCTTCAC+AGG | - | chr3.4:86412826-86412845 | None:intergenic | 40.0% |
| ! | TCGTTCATCGACTGAAGTAT+CGG | - | chr3.4:86408482-86408501 | None:intergenic | 40.0% |
| ! | TTAATGCCTGAGCTTGGTTT+TGG | + | chr3.4:86408985-86409004 | MS.gene013379:CDS | 40.0% |
| ! | TTAGTTGGTGTAAATGGTGC+GGG | + | chr3.4:86408643-86408662 | MS.gene013379:CDS | 40.0% |
| ! | TTGGTTGCTTCTTTTAGTGG+TGG | + | chr3.4:86409027-86409046 | MS.gene013379:CDS | 40.0% |
| ! | TTTTTCGTCAAGGCTGTATG+CGG | + | chr3.4:86413080-86413099 | MS.gene013379:intron | 40.0% |
| !! | AAGGGAAATGTGGTGCTATT+AGG | + | chr3.4:86411478-86411497 | MS.gene013379:intron | 40.0% |
| !! | AGAGAGTTGATAAGCAGGTT+AGG | + | chr3.4:86409888-86409907 | MS.gene013379:CDS | 40.0% |
| !! | AGGTTGGTTGCTTCTTTTAG+TGG | + | chr3.4:86409024-86409043 | MS.gene013379:CDS | 40.0% |
| !! | AGTGTTAAAGGTGTTGGGTT+TGG | - | chr3.4:86408341-86408360 | None:intergenic | 40.0% |
| !! | CTTCAATTGGAAGTGTCTAG+TGG | + | chr3.4:86409277-86409296 | MS.gene013379:intron | 40.0% |
| !! | CTTCTGTTTTGCTTGCTGAA+AGG | - | chr3.4:86413569-86413588 | None:intergenic | 40.0% |
| !! | GCTGACTTGATTTAGTCAAC+AGG | + | chr3.4:86410773-86410792 | MS.gene013379:intron | 40.0% |
| !! | TTGCTTCTTTTAGTGGTGGA+TGG | + | chr3.4:86409031-86409050 | MS.gene013379:CDS | 40.0% |
| !!! | AGGTGTTACGGTTTTGAAAG+AGG | + | chr3.4:86408585-86408604 | MS.gene013379:CDS | 40.0% |
| !!! | GAACTTGGATTTTGGCTTTG+AGG | + | chr3.4:86410406-86410425 | MS.gene013379:CDS | 40.0% |
| !!! | GCTGGCTTTTTGCAAATTCA+TGG | + | chr3.4:86411792-86411811 | MS.gene013379:CDS | 40.0% |
| AAACTGACATGGGTGTATCC+AGG | + | chr3.4:86409763-86409782 | MS.gene013379:CDS | 45.0% | |
| AAAGAGGAAATGGAGGTTGC+GGG | + | chr3.4:86408820-86408839 | MS.gene013379:CDS | 45.0% | |
| AACTGAAGTTTCATCCACGG+CGG | - | chr3.4:86408431-86408450 | None:intergenic | 45.0% | |
| ACCATCTCAATGTTCGAGGT+TGG | - | chr3.4:86411302-86411321 | None:intergenic | 45.0% | |
| AGGATAACTTCACCGCTGAT+TGG | - | chr3.4:86410631-86410650 | None:intergenic | 45.0% | |
| AGTTAAAGATGGCACTGTGC+AGG | + | chr3.4:86412114-86412133 | MS.gene013379:CDS | 45.0% | |
| ATCAGCGGTGAAGTTATCCT+TGG | + | chr3.4:86410631-86410650 | MS.gene013379:CDS | 45.0% | |
| ATCAGGCTGAGAAAGAAGCA+AGG | + | chr3.4:86413524-86413543 | MS.gene013379:intron | 45.0% | |
| ATTAGGTTCTCACCATGGCA+GGG | + | chr3.4:86411495-86411514 | MS.gene013379:intron | 45.0% | |
| CAACATGTCAGTGTCGTGAT+CGG | - | chr3.4:86409166-86409185 | None:intergenic | 45.0% | |
| CATGCTTCCATGGTACTCTT+CGG | + | chr3.4:86411659-86411678 | MS.gene013379:intron | 45.0% | |
| CTGTGAAACTCGTATGGATG+AGG | + | chr3.4:86413440-86413459 | MS.gene013379:intron | 45.0% | |
| GAGGCAATAAACGAGTACGA+GGG | + | chr3.4:86412028-86412047 | MS.gene013379:CDS | 45.0% | |
| GATAGCAAATACGCCTGTGA+AGG | + | chr3.4:86412810-86412829 | MS.gene013379:intron | 45.0% | |
| GATGAACAAGATCGCCAAGA+AGG | - | chr3.4:86412442-86412461 | None:intergenic | 45.0% | |
| GATGAGATGAGTGTGGGATA+GGG | - | chr3.4:86408317-86408336 | None:intergenic | 45.0% | |
| GATGAGGATTATTGCGGGTT+TGG | + | chr3.4:86408678-86408697 | MS.gene013379:CDS | 45.0% | |
| GCGGGTAAAGAAGCAATTCT+CGG | - | chr3.4:86411111-86411130 | None:intergenic | 45.0% | |
| GGAGAAGAATCTTGATGCCA+GGG | + | chr3.4:86413335-86413354 | MS.gene013379:CDS | 45.0% | |
| GGATGAACCAACGAATCACT+TGG | + | chr3.4:86411840-86411859 | MS.gene013379:CDS | 45.0% | |
| GGCACTTGATCTGGAAAAGA+CGG | + | chr3.4:86410800-86410819 | MS.gene013379:CDS | 45.0% | |
| GGTGTATCCAGGACATTTGA+GGG | + | chr3.4:86409774-86409793 | MS.gene013379:CDS | 45.0% | |
| GGTTTAGAGAAGCCAATCAG+CGG | + | chr3.4:86410616-86410635 | MS.gene013379:CDS | 45.0% | |
| GTACTCTTGCCACATCCATT+TGG | - | chr3.4:86410577-86410596 | None:intergenic | 45.0% | |
| GTCGAGTCTGTATTGGAGAT+TGG | + | chr3.4:86409248-86409267 | MS.gene013379:intron | 45.0% | |
| TACGCCTGTGAAGGATCAAA+AGG | + | chr3.4:86412819-86412838 | MS.gene013379:intron | 45.0% | |
| TATTAGGTTCTCACCATGGC+AGG | + | chr3.4:86411494-86411513 | MS.gene013379:intron | 45.0% | |
| TCAGCGGTGAAGTTATCCTT+GGG | + | chr3.4:86410632-86410651 | MS.gene013379:CDS | 45.0% | |
| TCCAACCTCGAACATTGAGA+TGG | + | chr3.4:86411298-86411317 | MS.gene013379:intron | 45.0% | |
| TCTACACCAAAACCAAGCTC+AGG | - | chr3.4:86408994-86409013 | None:intergenic | 45.0% | |
| TCTCTTAGTGGCAGGATTCA+GGG | + | chr3.4:86412968-86412987 | MS.gene013379:intron | 45.0% | |
| TGAACAAGATCGCCAAGAAG+GGG | - | chr3.4:86412440-86412459 | None:intergenic | 45.0% | |
| TGGAGAAGAATCTTGATGCC+AGG | + | chr3.4:86413334-86413353 | MS.gene013379:CDS | 45.0% | |
| TTGATAAGCAGGTTAGGTGC+CGG | + | chr3.4:86409894-86409913 | MS.gene013379:CDS | 45.0% | |
| TTTGGCGATGAGATGAGTGT+GGG | - | chr3.4:86408323-86408342 | None:intergenic | 45.0% | |
| ! | AAAAAAGCTAATGGCGGGGA+GGG | - | chr3.4:86412179-86412198 | None:intergenic | 45.0% |
| ! | GGTGAGAAAGTGGGTTTAGT+TGG | + | chr3.4:86408628-86408647 | MS.gene013379:CDS | 45.0% |
| ! | GTGCTATTAGGTTCTCACCA+TGG | + | chr3.4:86411490-86411509 | MS.gene013379:intron | 45.0% |
| ! | TAGTTGGTGTAAATGGTGCG+GGG | + | chr3.4:86408644-86408663 | MS.gene013379:CDS | 45.0% |
| ! | TCTATTGAGTGGTGGTGAGA+AGG | + | chr3.4:86410929-86410948 | MS.gene013379:CDS | 45.0% |
| ! | TGGCGGATAAACGTGAAGTA+TGG | - | chr3.4:86408405-86408424 | None:intergenic | 45.0% |
| ! | TGTCAGTGTCGAGTCTGTAT+TGG | + | chr3.4:86409241-86409260 | MS.gene013379:intron | 45.0% |
| !! | ATGATTTGGAGTTGATGGGG+AGG | + | chr3.4:86408884-86408903 | MS.gene013379:CDS | 45.0% |
| !! | CAATTGGAAGTGTCTAGTGG+TGG | + | chr3.4:86409280-86409299 | MS.gene013379:intron | 45.0% |
| !! | GTTGTATCCGAAGAGTACCA+TGG | - | chr3.4:86411669-86411688 | None:intergenic | 45.0% |
| !!! | TGAGCTTGGTTTTGGTGTAG+AGG | + | chr3.4:86408993-86409012 | MS.gene013379:CDS | 45.0% |
| !!! | TTTTTTTTTACTAAAATTAA+GGG | + | chr3.4:86412925-86412944 | MS.gene013379:intron | 5.0% |
| !!! | TTTTTTTTTTACTAAAATTA+AGG | + | chr3.4:86412924-86412943 | MS.gene013379:intron | 5.0% |
| AAAATCAGGTTCCCTGTGCG+TGG | + | chr3.4:86410353-86410372 | MS.gene013379:CDS | 50.0% | |
| AAGAGGAAATGGAGGTTGCG+GGG | + | chr3.4:86408821-86408840 | MS.gene013379:CDS | 50.0% | |
| AATGGAGGTTGCGGGGAAAT+TGG | + | chr3.4:86408828-86408847 | MS.gene013379:CDS | 50.0% | |
| ACGAGCTCAGGCTGTGAATT+TGG | + | chr3.4:86408936-86408955 | MS.gene013379:CDS | 50.0% | |
| AGATGAAACGCTTGAAGCGC+CGG | - | chr3.4:86408530-86408549 | None:intergenic | 50.0% | |
| CAGCCGTGCCTAGTAAAACA+TGG | - | chr3.4:86411776-86411795 | None:intergenic | 50.0% | |
| CAGCGGTGAAGTTATCCTTG+GGG | + | chr3.4:86410633-86410652 | MS.gene013379:CDS | 50.0% | |
| CCTTCTCAGCAGTTGAAGCA+CGG | - | chr3.4:86409932-86409951 | None:intergenic | 50.0% | |
| CGATGAGATGAGTGTGGGAT+AGG | - | chr3.4:86408318-86408337 | None:intergenic | 50.0% | |
| CGTACTCGTTTATTGCCTCC+TGG | - | chr3.4:86412027-86412046 | None:intergenic | 50.0% | |
| CTCTCTTAGTGGCAGGATTC+AGG | + | chr3.4:86412967-86412986 | MS.gene013379:intron | 50.0% | |
| GAACAAGATCGCCAAGAAGG+GGG | - | chr3.4:86412439-86412458 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGATGAG+AGG | - | chr3.4:86411568-86411587 | None:intergenic | 50.0% | |
| GAGGATTATTGCGGGTTTGG+AGG | + | chr3.4:86408681-86408700 | MS.gene013379:CDS | 50.0% | |
| GCCCAAAGAATGCAGGTGTA+TGG | - | chr3.4:86411378-86411397 | None:intergenic | 50.0% | |
| GGAAAAAGAGCTTGAACGCC+AGG | + | chr3.4:86413356-86413375 | MS.gene013379:CDS | 50.0% | |
| GGAGGCAATAAACGAGTACG+AGG | + | chr3.4:86412027-86412046 | MS.gene013379:intron | 50.0% | |
| GGGTGTATCCAGGACATTTG+AGG | + | chr3.4:86409773-86409792 | MS.gene013379:CDS | 50.0% | |
| GTTTGGCGATGAGATGAGTG+TGG | - | chr3.4:86408324-86408343 | None:intergenic | 50.0% | |
| TAACAAGCAGGATGTGCCGA+TGG | + | chr3.4:86409686-86409705 | MS.gene013379:CDS | 50.0% | |
| TAGTGGCAGGATTCAGGGAA+GGG | + | chr3.4:86412973-86412992 | MS.gene013379:intron | 50.0% | |
| TATTGCGGGTTTGGAGGAAC+CGG | + | chr3.4:86408687-86408706 | MS.gene013379:CDS | 50.0% | |
| TGAGGTTTCGCAGAGTAGGA+CGG | + | chr3.4:86408771-86408790 | MS.gene013379:CDS | 50.0% | |
| TGGCAGATGAGGATGTGTCT+TGG | + | chr3.4:86409051-86409070 | MS.gene013379:CDS | 50.0% | |
| TTAGTGGCAGGATTCAGGGA+AGG | + | chr3.4:86412972-86412991 | MS.gene013379:intron | 50.0% | |
| TTCTCACCATGGCAGGGTTT+GGG | + | chr3.4:86411501-86411520 | MS.gene013379:intron | 50.0% | |
| TTTGCTTCAGAGACGAGCTC+AGG | + | chr3.4:86408924-86408943 | MS.gene013379:CDS | 50.0% | |
| ! | AAAAAGCTAATGGCGGGGAG+GGG | - | chr3.4:86412178-86412197 | None:intergenic | 50.0% |
| ! | CAAAAAAGCTAATGGCGGGG+AGG | - | chr3.4:86412180-86412199 | None:intergenic | 50.0% |
| ! | CATGTTTTACTAGGCACGGC+TGG | + | chr3.4:86411774-86411793 | MS.gene013379:intron | 50.0% |
| ! | GCGTTCAAGCTCTTTTTCCC+TGG | - | chr3.4:86413355-86413374 | None:intergenic | 50.0% |
| !! | AAAGTGCAGAAGGCGCTTGA+GGG | + | chr3.4:86408853-86408872 | MS.gene013379:CDS | 50.0% |
| !! | TTAGTGGTGGATGGCAGATG+AGG | + | chr3.4:86409040-86409059 | MS.gene013379:CDS | 50.0% |
| CCGTGCTTCAACTGCTGAGA+AGG | + | chr3.4:86409929-86409948 | MS.gene013379:CDS | 55.0% | |
| CGAGAATGAATGCTCCGGTG+AGG | - | chr3.4:86408273-86408292 | None:intergenic | 55.0% | |
| CTTTGTCGTCAAGCTCAGCC+TGG | - | chr3.4:86413377-86413396 | None:intergenic | 55.0% | |
| GACAGTAGAGGAAGCTGCAG+AGG | + | chr3.4:86410830-86410849 | MS.gene013379:CDS | 55.0% | |
| GACGGTGCTTGAGACAGTAG+AGG | + | chr3.4:86410818-86410837 | MS.gene013379:CDS | 55.0% | |
| GGCACTGTGCAGGATTATGC+TGG | + | chr3.4:86412124-86412143 | MS.gene013379:CDS | 55.0% | |
| GGCGCTTCAAGCGTTTCATC+TGG | + | chr3.4:86408529-86408548 | MS.gene013379:CDS | 55.0% | |
| GGGTTTGGAGGAACCGGATT+CGG | + | chr3.4:86408693-86408712 | MS.gene013379:CDS | 55.0% | |
| GGTTTGGAGGAACCGGATTC+GGG | + | chr3.4:86408694-86408713 | MS.gene013379:CDS | 55.0% | |
| GTTCTCACCATGGCAGGGTT+TGG | + | chr3.4:86411500-86411519 | MS.gene013379:intron | 55.0% | |
| GTTTGGAGGAACCGGATTCG+GGG | + | chr3.4:86408695-86408714 | MS.gene013379:CDS | 55.0% | |
| TAGAGGAAGCTGCAGAGGAC+TGG | + | chr3.4:86410835-86410854 | MS.gene013379:CDS | 55.0% | |
| TATCCGCTTTGCCCCCTTCT+TGG | + | chr3.4:86412425-86412444 | MS.gene013379:intron | 55.0% | |
| TCTCACCATGGCAGGGTTTG+GGG | + | chr3.4:86411502-86411521 | MS.gene013379:intron | 55.0% | |
| TTCCACTGCTTCCACGCACA+GGG | - | chr3.4:86410367-86410386 | None:intergenic | 55.0% | |
| TTCGCAGAGTAGGACGGTGA+GGG | + | chr3.4:86408777-86408796 | MS.gene013379:CDS | 55.0% | |
| TTTCGCAGAGTAGGACGGTG+AGG | + | chr3.4:86408776-86408795 | MS.gene013379:CDS | 55.0% | |
| ! | AAAAGCTAATGGCGGGGAGG+GGG | - | chr3.4:86412177-86412196 | None:intergenic | 55.0% |
| ! | ACAGGCTGAGGCACTTGATC+TGG | + | chr3.4:86410791-86410810 | MS.gene013379:intron | 55.0% |
| !! | GAAAGTGCAGAAGGCGCTTG+AGG | + | chr3.4:86408852-86408871 | MS.gene013379:CDS | 55.0% |
| !! | TTAGGTGCCGGAGCAAGTTC+TGG | + | chr3.4:86409906-86409925 | MS.gene013379:CDS | 55.0% |
| !!! | GGAGTTGATGGGGAGGCTTT+TGG | + | chr3.4:86408891-86408910 | MS.gene013379:CDS | 55.0% |
| ACCATGGCAGGGTTTGGGGA+AGG | + | chr3.4:86411506-86411525 | MS.gene013379:intron | 60.0% | |
| AGGAAGCTGCAGAGGACTGG+AGG | + | chr3.4:86410838-86410857 | MS.gene013379:CDS | 60.0% | |
| AGTTTCATCCACGGCGGCGA+TGG | - | chr3.4:86408425-86408444 | None:intergenic | 60.0% | |
| CCATGGCAGGGTTTGGGGAA+GGG | + | chr3.4:86411507-86411526 | MS.gene013379:intron | 60.0% | |
| CGGGGAAGACGACACAGATG+AGG | + | chr3.4:86408662-86408681 | MS.gene013379:CDS | 60.0% | |
| CTTCCACTGCTTCCACGCAC+AGG | - | chr3.4:86410368-86410387 | None:intergenic | 60.0% | |
| GGCAGGATTCAGGGAAGGGT+GGG | + | chr3.4:86412977-86412996 | MS.gene013379:intron | 60.0% | |
| TCGCCAAGAAGGGGGCAAAG+CGG | - | chr3.4:86412431-86412450 | None:intergenic | 60.0% | |
| TGAATGCTCCGGTGAGGTCG+AGG | - | chr3.4:86408267-86408286 | None:intergenic | 60.0% | |
| TGAGTGTGGGATAGGGTGCG+TGG | - | chr3.4:86408310-86408329 | None:intergenic | 60.0% | |
| TGGCAGGATTCAGGGAAGGG+TGG | + | chr3.4:86412976-86412995 | MS.gene013379:intron | 60.0% | |
| TGTGGGATAGGGTGCGTGGA+AGG | - | chr3.4:86408306-86408325 | None:intergenic | 60.0% | |
| TTCCCTGTGCGTGGAAGCAG+TGG | + | chr3.4:86410362-86410381 | MS.gene013379:CDS | 60.0% | |
| ! | AAAGCTAATGGCGGGGAGGG+GGG | - | chr3.4:86412176-86412195 | None:intergenic | 60.0% |
| ! | AGCACGGCCAGAACTTGCTC+CGG | - | chr3.4:86409916-86409935 | None:intergenic | 60.0% |
| ATGCTCCGGTGAGGTCGAGG+TGG | - | chr3.4:86408264-86408283 | None:intergenic | 65.0% | |
| CCCTTCCCCAAACCCTGCCA+TGG | - | chr3.4:86411510-86411529 | None:intergenic | 65.0% | |
| CTCCACCACCTCGACCTCAC+CGG | + | chr3.4:86408256-86408275 | MS.gene013379:CDS | 65.0% | |
| TTCATCCACGGCGGCGATGG+CGG | - | chr3.4:86408422-86408441 | None:intergenic | 65.0% | |
| TTTATCCGCCATCGCCGCCG+TGG | + | chr3.4:86408414-86408433 | MS.gene013379:CDS | 65.0% | |
| ! | AAGCTAATGGCGGGGAGGGG+GGG | - | chr3.4:86412175-86412194 | None:intergenic | 65.0% |
| CTCCGGTGAGGTCGAGGTGG+TGG | - | chr3.4:86408261-86408280 | None:intergenic | 70.0% | |
| ! | AGCTAATGGCGGGGAGGGGG+GGG | - | chr3.4:86412174-86412193 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 86408238 | 86413624 | 86408238 | ID=MS.gene013379 |
| chr3.4 | mRNA | 86408238 | 86413624 | 86408238 | ID=MS.gene013379.t1;Parent=MS.gene013379 |
| chr3.4 | exon | 86408238 | 86409089 | 86408238 | ID=MS.gene013379.t1.exon1;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86408238 | 86409089 | 86408238 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| chr3.4 | exon | 86409609 | 86409950 | 86409609 | ID=MS.gene013379.t1.exon2;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86409609 | 86409950 | 86409609 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| chr3.4 | exon | 86410293 | 86410433 | 86410293 | ID=MS.gene013379.t1.exon3;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86410293 | 86410433 | 86410293 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| chr3.4 | exon | 86410514 | 86410693 | 86410514 | ID=MS.gene013379.t1.exon4;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86410514 | 86410693 | 86410514 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| chr3.4 | exon | 86410795 | 86410950 | 86410795 | ID=MS.gene013379.t1.exon5;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86410795 | 86410950 | 86410795 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| chr3.4 | exon | 86411787 | 86411888 | 86411787 | ID=MS.gene013379.t1.exon6;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86411787 | 86411888 | 86411787 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| chr3.4 | exon | 86412028 | 86412156 | 86412028 | ID=MS.gene013379.t1.exon7;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86412028 | 86412156 | 86412028 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| chr3.4 | exon | 86413327 | 86413431 | 86413327 | ID=MS.gene013379.t1.exon8;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86413327 | 86413431 | 86413327 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| chr3.4 | exon | 86413529 | 86413624 | 86413529 | ID=MS.gene013379.t1.exon9;Parent=MS.gene013379.t1 |
| chr3.4 | CDS | 86413529 | 86413624 | 86413529 | ID=cds.MS.gene013379.t1;Parent=MS.gene013379.t1 |
| Gene Sequence |
| Protein sequence |
