Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013560.t1 | XP_003602285.1 | 100 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.40E-57 | 231.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013560.t1 | Q9T096 | 82.1 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 5.1e-48 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013560.t1 | G7J7H5 | 100.0 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.7e-57 | 231.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013560 | MS.gene057330 | PPI |
| MS.gene013560 | MS.gene060686 | PPI |
| MS.gene013560 | MS.gene58367 | PPI |
| MS.gene013560 | MS.gene059765 | PPI |
| MS.gene013560 | MS.gene69238 | PPI |
| MS.gene013560 | MS.gene71872 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013560.t1 | MTR_3g091840 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.42e-78 | 225 |
| MS.gene013560.t1 | MTR_8g027255 | 67.619 | 105 | 34 | 0 | 1 | 105 | 1 | 105 | 1.81e-50 | 155 |
| MS.gene013560.t1 | MTR_1g077750 | 67.000 | 100 | 29 | 1 | 1 | 100 | 1 | 96 | 5.63e-46 | 144 |
| MS.gene013560.t1 | MTR_2g078670 | 55.789 | 95 | 42 | 0 | 8 | 102 | 12 | 106 | 7.19e-35 | 116 |
| MS.gene013560.t1 | MTR_3g070330 | 52.174 | 92 | 44 | 0 | 8 | 99 | 35 | 126 | 1.33e-33 | 113 |
| MS.gene013560.t1 | MTR_5g082490 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 2.20e-33 | 112 |
| MS.gene013560.t1 | MTR_3g070330 | 51.064 | 94 | 46 | 0 | 8 | 101 | 35 | 128 | 3.37e-33 | 113 |
| MS.gene013560.t1 | MTR_7g068250 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 1.80e-32 | 110 |
| MS.gene013560.t1 | MTR_8g058785 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 4.85e-31 | 107 |
| MS.gene013560.t1 | MTR_8g061270 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 4.85e-31 | 107 |
| MS.gene013560.t1 | MTR_4g088505 | 46.316 | 95 | 51 | 0 | 8 | 102 | 12 | 106 | 1.44e-27 | 97.8 |
| MS.gene013560.t1 | MTR_1g077760 | 67.857 | 56 | 18 | 0 | 44 | 99 | 1 | 56 | 7.54e-22 | 83.6 |
| MS.gene013560.t1 | MTR_4g088505 | 43.056 | 72 | 41 | 0 | 8 | 79 | 12 | 83 | 1.11e-17 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013560.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene013560.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene013560.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene013560.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene013560.t1 | AT5G53940 | 51.546 | 97 | 47 | 0 | 8 | 104 | 12 | 108 | 4.52e-34 | 114 |
| MS.gene013560.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 4.57e-34 | 114 |
| MS.gene013560.t1 | AT4G27740 | 54.839 | 93 | 42 | 0 | 10 | 102 | 10 | 102 | 5.10e-34 | 113 |
| MS.gene013560.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 45 | 138 | 7.74e-34 | 115 |
| MS.gene013560.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 14 | 102 | 1.27e-33 | 112 |
| MS.gene013560.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 47 | 135 | 1.74e-33 | 113 |
| MS.gene013560.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene013560.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene013560.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene013560.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 1.03e-32 | 110 |
| MS.gene013560.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 1.03e-32 | 110 |
| MS.gene013560.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 2.08e-32 | 109 |
| MS.gene013560.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 2.08e-32 | 109 |
| MS.gene013560.t1 | AT2G40110 | 48.936 | 94 | 48 | 0 | 8 | 101 | 12 | 105 | 2.90e-31 | 107 |
| MS.gene013560.t1 | AT2G40110 | 48.352 | 91 | 47 | 0 | 8 | 98 | 12 | 102 | 8.23e-31 | 105 |
| MS.gene013560.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.62e-21 | 81.6 |
| MS.gene013560.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.62e-21 | 81.6 |
Find 23 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGATGCCTGTCTTCTTT+TGG | 0.254022 | 3.4:+84078869 | None:intergenic |
| CGGTGATTGTCGTGAAGTGC+TGG | 0.349966 | 3.4:-84078813 | MS.gene013560:CDS |
| TTGGGTTACCTGAAAAGCCT+TGG | 0.462037 | 3.4:+84080765 | None:intergenic |
| GAAGTACGAAAGAGCGTATG+AGG | 0.502168 | 3.4:-84078786 | MS.gene013560:CDS |
| TCATGATGATATTATTTCCA+AGG | 0.502878 | 3.4:-84080782 | MS.gene013560:CDS |
| GAAGACAGGCATCTCTTGAC+TGG | 0.509264 | 3.4:-84078863 | MS.gene013560:CDS |
| CAGTGACAACATTCATTGCA+TGG | 0.547511 | 3.4:+84078894 | None:intergenic |
| CATGCAATGAATGTTGTCAC+TGG | 0.550116 | 3.4:-84078893 | MS.gene013560:CDS |
| ATTGTCGTGAAGTGCTGGGT+TGG | 0.550480 | 3.4:-84078808 | MS.gene013560:CDS |
| CATTGCATGGGAAAACAGAA+AGG | 0.570564 | 3.4:+84078907 | None:intergenic |
| TCACTGGGCCAAAAGAAGAC+AGG | 0.572382 | 3.4:-84078877 | MS.gene013560:CDS |
| GGTGATTGTCGTGAAGTGCT+GGG | 0.586167 | 3.4:-84078812 | MS.gene013560:CDS |
| CATGGGAAAACAGAAAGGCT+CGG | 0.593139 | 3.4:+84078912 | None:intergenic |
| AGTGACAACATTCATTGCAT+GGG | 0.597466 | 3.4:+84078895 | None:intergenic |
| TGAGGCGTCCCAGAAGTACA+AGG | 0.604854 | 3.4:-84078768 | MS.gene013560:CDS |
| ACAATCACCGCAGTAAACAT+CGG | 0.609550 | 3.4:+84078826 | None:intergenic |
| GCGTCCCAGAAGTACAAGGA+AGG | 0.640509 | 3.4:-84078764 | MS.gene013560:CDS |
| ATGCAATGAATGTTGTCACT+GGG | 0.665460 | 3.4:-84078892 | MS.gene013560:CDS |
| AAACATCGGCAACAGTGTGG+AGG | 0.669170 | 3.4:+84078840 | None:intergenic |
| TATCATCATGAAGTGAAACA+TGG | 0.670134 | 3.4:+84080794 | None:intergenic |
| TTACAGCAGCAGTACAAGCG+AGG | 0.670520 | 3.4:+84080826 | None:intergenic |
| AGTAAACATCGGCAACAGTG+TGG | 0.714554 | 3.4:+84078837 | None:intergenic |
| ACTGTTGCCGATGTTTACTG+CGG | 0.731700 | 3.4:-84078833 | MS.gene013560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATGGAAATAAT+TGG | + | chr3.4:84078819-84078838 | None:intergenic | 10.0% |
| !! | AAAAAAAAATGGAAATAATT+GGG | + | chr3.4:84078818-84078837 | None:intergenic | 10.0% |
| !! | GTAATATTATGAAATAAGTT+TGG | + | chr3.4:84079694-84079713 | None:intergenic | 15.0% |
| !!! | ATTACTTTTACTAATAAAAC+AGG | + | chr3.4:84080314-84080333 | None:intergenic | 15.0% |
| !!! | GTAATTTTTAAAATCAAACT+TGG | + | chr3.4:84078941-84078960 | None:intergenic | 15.0% |
| !!! | GTTTGTAAATAGAATTTTTA+AGG | - | chr3.4:84079125-84079144 | MS.gene013560:intron | 15.0% |
| !!! | TTTGTTTCTTAAATAGAAAA+TGG | - | chr3.4:84080396-84080415 | MS.gene013560:intron | 15.0% |
| !! | AACAAAAAAAGAAATGCTAA+AGG | + | chr3.4:84080373-84080392 | None:intergenic | 20.0% |
| !! | ATACTATAGTTTATATAGAG+AGG | + | chr3.4:84080042-84080061 | None:intergenic | 20.0% |
| !! | TACTATAGTTTATATAGAGA+GGG | + | chr3.4:84080041-84080060 | None:intergenic | 20.0% |
| !! | TGAAAAGTCAAAAATTGTTA+TGG | - | chr3.4:84080833-84080852 | MS.gene013560:CDS | 20.0% |
| !! | TTATAAAAGAGGGAAATATT+GGG | - | chr3.4:84080266-84080285 | MS.gene013560:intron | 20.0% |
| !!! | TTTCATTAATTTTGTAACCA+GGG | - | chr3.4:84080618-84080637 | MS.gene013560:intron | 20.0% |
| !!! | TTTTCATTAATTTTGTAACC+AGG | - | chr3.4:84080617-84080636 | MS.gene013560:intron | 20.0% |
| ! | ACAATATCAGTAAATGATCA+AGG | + | chr3.4:84080598-84080617 | None:intergenic | 25.0% |
| ! | AGTGACACAATTAAACATAT+GGG | - | chr3.4:84079399-84079418 | MS.gene013560:intron | 25.0% |
| ! | ATATGAATAGGAGAATCAAA+AGG | - | chr3.4:84079531-84079550 | MS.gene013560:intron | 25.0% |
| ! | ATCATGCATATCTTGTATTT+AGG | - | chr3.4:84079083-84079102 | MS.gene013560:intron | 25.0% |
| ! | ATTAATTTCTCTTGCACTAT+AGG | - | chr3.4:84078914-84078933 | MS.gene013560:CDS | 25.0% |
| ! | CATCAAAAGAAGAATTTAGT+TGG | + | chr3.4:84080521-84080540 | None:intergenic | 25.0% |
| ! | CTCTTTAGTAAATAAAGCAA+TGG | - | chr3.4:84080238-84080257 | MS.gene013560:intron | 25.0% |
| ! | GTTATAAAAGAGGGAAATAT+TGG | - | chr3.4:84080265-84080284 | MS.gene013560:intron | 25.0% |
| ! | TATGAATAGGAGAATCAAAA+GGG | - | chr3.4:84079532-84079551 | MS.gene013560:intron | 25.0% |
| ! | TCATGATGATATTATTTCCA+AGG | - | chr3.4:84078780-84078799 | MS.gene013560:CDS | 25.0% |
| ! | TCATGCATATCTTGTATTTA+GGG | - | chr3.4:84079084-84079103 | MS.gene013560:intron | 25.0% |
| ! | TTATGAACCTAGAAATTGTA+CGG | + | chr3.4:84080346-84080365 | None:intergenic | 25.0% |
| ! | TTCAATTGCAATTTCAAATG+AGG | + | chr3.4:84080139-84080158 | None:intergenic | 25.0% |
| !! | CTATATTTAGAATGAATGCA+CGG | - | chr3.4:84079151-84079170 | MS.gene013560:intron | 25.0% |
| !! | GGTACTTTGTTTAATTACAA+TGG | + | chr3.4:84079766-84079785 | None:intergenic | 25.0% |
| !! | TCATTTGAAATTGCAATTGA+AGG | - | chr3.4:84080138-84080157 | MS.gene013560:intron | 25.0% |
| !!! | AGAGTTAATTTGTTAGGATA+TGG | - | chr3.4:84079466-84079485 | MS.gene013560:intron | 25.0% |
| !!! | GAGTTAATTTGTTAGGATAT+GGG | - | chr3.4:84079467-84079486 | MS.gene013560:intron | 25.0% |
| AACAGACTGCATATTCAATT+AGG | + | chr3.4:84080102-84080121 | None:intergenic | 30.0% | |
| AATCAGCAATGACATACAAT+AGG | + | chr3.4:84078897-84078916 | None:intergenic | 30.0% | |
| ACAGACTGCATATTCAATTA+GGG | + | chr3.4:84080101-84080120 | None:intergenic | 30.0% | |
| AGTTATCACAGTAGCAATTT+AGG | - | chr3.4:84079203-84079222 | MS.gene013560:intron | 30.0% | |
| ATAGGCATAAACATTCCAAA+TGG | - | chr3.4:84080482-84080501 | MS.gene013560:intron | 30.0% | |
| ATCGATACTGAATGTTTGAT+AGG | - | chr3.4:84080464-84080483 | MS.gene013560:intron | 30.0% | |
| ATGAATAGGAGAATCAAAAG+GGG | - | chr3.4:84079533-84079552 | MS.gene013560:intron | 30.0% | |
| ATTAACTCTACATCCTAACA+AGG | + | chr3.4:84079455-84079474 | None:intergenic | 30.0% | |
| CAAAAATTGTTATGGAGAAC+TGG | - | chr3.4:84080841-84080860 | MS.gene013560:CDS | 30.0% | |
| CAGTGACACAATTAAACATA+TGG | - | chr3.4:84079398-84079417 | MS.gene013560:intron | 30.0% | |
| CATATCTTGTATTTAGGGAT+TGG | - | chr3.4:84079089-84079108 | MS.gene013560:intron | 30.0% | |
| CCAGATTATCATATATCAGA+TGG | - | chr3.4:84079017-84079036 | MS.gene013560:intron | 30.0% | |
| CCATCTGATATATGATAATC+TGG | + | chr3.4:84079020-84079039 | None:intergenic | 30.0% | |
| TACAACAAGTTTCACATACA+CGG | + | chr3.4:84079787-84079806 | None:intergenic | 30.0% | |
| TATCATCATGAAGTGAAACA+TGG | + | chr3.4:84078771-84078790 | None:intergenic | 30.0% | |
| TGGATAAAATGGCAATTTGA+AGG | + | chr3.4:84079666-84079685 | None:intergenic | 30.0% | |
| TGTGAGTATCTCATATGAAT+AGG | - | chr3.4:84079519-84079538 | MS.gene013560:intron | 30.0% | |
| TTGTATTCCGTACAATTTCT+AGG | - | chr3.4:84080336-84080355 | MS.gene013560:intron | 30.0% | |
| ! | AATGGCTCTGTTATAAAAGA+GGG | - | chr3.4:84080256-84080275 | MS.gene013560:intron | 30.0% |
| ! | AGAATCTGAATTTGACTTCT+GGG | - | chr3.4:84079886-84079905 | MS.gene013560:intron | 30.0% |
| ! | ATGAAATAAGTTTGGCGTTT+TGG | + | chr3.4:84079686-84079705 | None:intergenic | 30.0% |
| ! | TATTATTTCCAAGGCTTTTC+AGG | - | chr3.4:84078789-84078808 | MS.gene013560:CDS | 30.0% |
| ! | TTAAGATTTTCGACCTTGTT+AGG | - | chr3.4:84079439-84079458 | MS.gene013560:intron | 30.0% |
| !! | AAACTTGTTGTAGCAACAAA+AGG | - | chr3.4:84079795-84079814 | MS.gene013560:intron | 30.0% |
| !! | GGATGTAGAGTTAATTTGTT+AGG | - | chr3.4:84079460-84079479 | MS.gene013560:intron | 30.0% |
| !! | TGTATCTGTAAAGTTGCTTT+TGG | - | chr3.4:84079342-84079361 | MS.gene013560:intron | 30.0% |
| !!! | AGTTGCTTTTGGTTGAAAAA+CGG | - | chr3.4:84079353-84079372 | MS.gene013560:intron | 30.0% |
| AACAAATGACCGAGCTTAAT+TGG | - | chr3.4:84079830-84079849 | MS.gene013560:intron | 35.0% | |
| AACTGACATGTGTACTTGTA+CGG | + | chr3.4:84079187-84079206 | None:intergenic | 35.0% | |
| AATGGCATGAGTTAATACGA+GGG | + | chr3.4:84079748-84079767 | None:intergenic | 35.0% | |
| ACATATGGGATATGTTGAGA+AGG | - | chr3.4:84079413-84079432 | MS.gene013560:intron | 35.0% | |
| AGTGACAACATTCATTGCAT+GGG | + | chr3.4:84080670-84080689 | None:intergenic | 35.0% | |
| ATGCAATGAATGTTGTCACT+GGG | - | chr3.4:84080670-84080689 | MS.gene013560:intron | 35.0% | |
| CAATTAGGGGTTAAACATGA+GGG | + | chr3.4:84080087-84080106 | None:intergenic | 35.0% | |
| CAGACTGCATATTCAATTAG+GGG | + | chr3.4:84080100-84080119 | None:intergenic | 35.0% | |
| CAGCCAAATATCACAAAGAT+TGG | - | chr3.4:84080431-84080450 | MS.gene013560:intron | 35.0% | |
| CATCGTCTACAATGAATTTC+AGG | - | chr3.4:84078853-84078872 | MS.gene013560:CDS | 35.0% | |
| CTCGCAATTGATTAGAAGTT+AGG | + | chr3.4:84078993-84079012 | None:intergenic | 35.0% | |
| CTGCCAATCTTTGTGATATT+TGG | + | chr3.4:84080437-84080456 | None:intergenic | 35.0% | |
| GACAGGTTTACAATAGTAGT+TGG | + | chr3.4:84080019-84080038 | None:intergenic | 35.0% | |
| GCAATTTGAAGGAAATCTGA+CGG | + | chr3.4:84079655-84079674 | None:intergenic | 35.0% | |
| GCTCATTAACCAATTAAGCT+CGG | + | chr3.4:84079842-84079861 | None:intergenic | 35.0% | |
| GGAGAAAACAACTATCCATT+TGG | + | chr3.4:84080500-84080519 | None:intergenic | 35.0% | |
| TAGTTTATATAGAGAGGGAC+AGG | + | chr3.4:84080036-84080055 | None:intergenic | 35.0% | |
| TATCAGATGGTTTCTGTTTG+TGG | - | chr3.4:84079030-84079049 | MS.gene013560:intron | 35.0% | |
| TCAATTAGGGGTTAAACATG+AGG | + | chr3.4:84080088-84080107 | None:intergenic | 35.0% | |
| TGTTAACCCTTCAGTTCTTA+GGG | + | chr3.4:84079978-84079997 | None:intergenic | 35.0% | |
| ! | AAACGGCATTTTAAATGTGC+TGG | - | chr3.4:84079370-84079389 | MS.gene013560:intron | 35.0% |
| ! | AACGGCATTTTAAATGTGCT+GGG | - | chr3.4:84079371-84079390 | MS.gene013560:intron | 35.0% |
| ! | ATTTTCCTTCCTTGTACTTC+TGG | + | chr3.4:84080806-84080825 | None:intergenic | 35.0% |
| ! | CAATGGCTCTGTTATAAAAG+AGG | - | chr3.4:84080255-84080274 | MS.gene013560:intron | 35.0% |
| ! | GAGAATCTGAATTTGACTTC+TGG | - | chr3.4:84079885-84079904 | MS.gene013560:intron | 35.0% |
| ! | TGTTAGGATATGGGTTATGA+AGG | - | chr3.4:84079476-84079495 | MS.gene013560:intron | 35.0% |
| ! | TTTTCCTTCCTTGTACTTCT+GGG | + | chr3.4:84080805-84080824 | None:intergenic | 35.0% |
| ! | TTTTGTAACCAGGGAAGAAA+TGG | - | chr3.4:84080627-84080646 | MS.gene013560:intron | 35.0% |
| !! | GTTTGGCGTTTTGGATAAAA+TGG | + | chr3.4:84079677-84079696 | None:intergenic | 35.0% |
| ACAATCACCGCAGTAAACAT+CGG | + | chr3.4:84080739-84080758 | None:intergenic | 40.0% | |
| AGGGATGAGTTACAACACAA+GGG | + | chr3.4:84079729-84079748 | None:intergenic | 40.0% | |
| CAATGGCATGAGTTAATACG+AGG | + | chr3.4:84079749-84079768 | None:intergenic | 40.0% | |
| CAGTGACAACATTCATTGCA+TGG | + | chr3.4:84080671-84080690 | None:intergenic | 40.0% | |
| CATGCAATGAATGTTGTCAC+TGG | - | chr3.4:84080669-84080688 | MS.gene013560:intron | 40.0% | |
| CATTGCATGGGAAAACAGAA+AGG | + | chr3.4:84080658-84080677 | None:intergenic | 40.0% | |
| GCAAGTTATAACTCATTCGC+AGG | + | chr3.4:84079628-84079647 | None:intergenic | 40.0% | |
| GGTTTCTGTTTGTGGTACTA+GGG | - | chr3.4:84079038-84079057 | MS.gene013560:intron | 40.0% | |
| GTGTTAACCCTTCAGTTCTT+AGG | + | chr3.4:84079979-84079998 | None:intergenic | 40.0% | |
| GTTAACCCTTCAGTTCTTAG+GGG | + | chr3.4:84079977-84079996 | None:intergenic | 40.0% | |
| GTTGCGAGCTAAATAAAGTC+TGG | + | chr3.4:84079927-84079946 | None:intergenic | 40.0% | |
| TAAGCTCGGTCATTTGTTTG+CGG | + | chr3.4:84079828-84079847 | None:intergenic | 40.0% | |
| TCTCGCGAAAGATTCATCAT+TGG | + | chr3.4:84079869-84079888 | None:intergenic | 40.0% | |
| TGGTTTCTGTTTGTGGTACT+AGG | - | chr3.4:84079037-84079056 | MS.gene013560:intron | 40.0% | |
| TTTGTCTGCAGAGAAAGTGA+CGG | - | chr3.4:84079260-84079279 | MS.gene013560:intron | 40.0% | |
| ! | AAGAGATGCCTGTCTTCTTT+TGG | + | chr3.4:84080696-84080715 | None:intergenic | 40.0% |
| ! | AATGAATGCACGGATTGTAC+AGG | - | chr3.4:84079161-84079180 | MS.gene013560:intron | 40.0% |
| ! | ATCTGAATTTGACTTCTGGG+TGG | - | chr3.4:84079889-84079908 | MS.gene013560:intron | 40.0% |
| !! | TGCCTCTAAAATCACAGTGA+CGG | + | chr3.4:84079311-84079330 | None:intergenic | 40.0% |
| ACTGTTGCCGATGTTTACTG+CGG | - | chr3.4:84080729-84080748 | MS.gene013560:intron | 45.0% | |
| AGTAAACATCGGCAACAGTG+TGG | + | chr3.4:84080728-84080747 | None:intergenic | 45.0% | |
| ATGAGGGATGCACTACAGAT+TGG | + | chr3.4:84080071-84080090 | None:intergenic | 45.0% | |
| CATGGGAAAACAGAAAGGCT+CGG | + | chr3.4:84080653-84080672 | None:intergenic | 45.0% | |
| CGCGAAAGATTCATCATTGG+TGG | + | chr3.4:84079866-84079885 | None:intergenic | 45.0% | |
| GAGGGATGAGTTACAACACA+AGG | + | chr3.4:84079730-84079749 | None:intergenic | 45.0% | |
| TGAGTTACAACACAAGGGAG+AGG | + | chr3.4:84079724-84079743 | None:intergenic | 45.0% | |
| TTGGGTTACCTGAAAAGCCT+TGG | + | chr3.4:84078800-84078819 | None:intergenic | 45.0% | |
| ! | GAAGTACGAAAGAGCGTATG+AGG | - | chr3.4:84080776-84080795 | MS.gene013560:CDS | 45.0% |
| ! | GACCGTCACTGTGATTTTAG+AGG | - | chr3.4:84079306-84079325 | MS.gene013560:intron | 45.0% |
| ! | TTTAGCTCGCAACCAAACTC+CGG | - | chr3.4:84079934-84079953 | MS.gene013560:intron | 45.0% |
| !! | TTAACAAAAAAAAAAAAAAA+TGG | + | chr3.4:84078829-84078848 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTTGTTA+AGG | - | chr3.4:84078828-84078847 | MS.gene013560:CDS | 5.0% |
| AAACATCGGCAACAGTGTGG+AGG | + | chr3.4:84080725-84080744 | None:intergenic | 50.0% | |
| CCTCTCCCCTAAGAACTGAA+GGG | - | chr3.4:84079969-84079988 | MS.gene013560:intron | 50.0% | |
| CCTTCAGTTCTTAGGGGAGA+GGG | + | chr3.4:84079971-84079990 | None:intergenic | 50.0% | |
| CTTCAGTTCTTAGGGGAGAG+GGG | + | chr3.4:84079970-84079989 | None:intergenic | 50.0% | |
| GAAGACAGGCATCTCTTGAC+TGG | - | chr3.4:84080699-84080718 | MS.gene013560:intron | 50.0% | |
| TCACTGGGCCAAAAGAAGAC+AGG | - | chr3.4:84080685-84080704 | MS.gene013560:intron | 50.0% | |
| TTACAGCAGCAGTACAAGCG+AGG | + | chr3.4:84078739-84078758 | None:intergenic | 50.0% | |
| ! | GGTGATTGTCGTGAAGTGCT+GGG | - | chr3.4:84080750-84080769 | MS.gene013560:intron | 50.0% |
| !! | ATTGTCGTGAAGTGCTGGGT+TGG | - | chr3.4:84080754-84080773 | MS.gene013560:intron | 50.0% |
| CAATCCACGCGCAACTCTTG+CGG | - | chr3.4:84080202-84080221 | MS.gene013560:intron | 55.0% | |
| CCCTCTCCCCTAAGAACTGA+AGG | - | chr3.4:84079968-84079987 | MS.gene013560:intron | 55.0% | |
| CCCTTCAGTTCTTAGGGGAG+AGG | + | chr3.4:84079972-84079991 | None:intergenic | 55.0% | |
| CGGTGATTGTCGTGAAGTGC+TGG | - | chr3.4:84080749-84080768 | MS.gene013560:intron | 55.0% | |
| GGCGCTAGTATTCCGGAGTT+TGG | + | chr3.4:84079949-84079968 | None:intergenic | 55.0% | |
| ! | GCGTCCCAGAAGTACAAGGA+AGG | - | chr3.4:84080798-84080817 | MS.gene013560:CDS | 55.0% |
| ! | TGAGGCGTCCCAGAAGTACA+AGG | - | chr3.4:84080794-84080813 | MS.gene013560:CDS | 55.0% |
| AGGCTCGGCCATTTCTTCCC+TGG | + | chr3.4:84080638-84080657 | None:intergenic | 60.0% | |
| ATGACCGCAAGAGTTGCGCG+TGG | + | chr3.4:84080209-84080228 | None:intergenic | 60.0% | |
| !! | GGAGAGGGGCGCTAGTATTC+CGG | + | chr3.4:84079956-84079975 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84078718 | 84080866 | 84078718 | ID=MS.gene013560 |
| chr3.4 | mRNA | 84078718 | 84080866 | 84078718 | ID=MS.gene013560.t1;Parent=MS.gene013560 |
| chr3.4 | exon | 84080774 | 84080866 | 84080774 | ID=MS.gene013560.t1.exon1;Parent=MS.gene013560.t1 |
| chr3.4 | CDS | 84080774 | 84080866 | 84080774 | ID=cds.MS.gene013560.t1;Parent=MS.gene013560.t1 |
| chr3.4 | exon | 84078718 | 84078945 | 84078718 | ID=MS.gene013560.t1.exon2;Parent=MS.gene013560.t1 |
| chr3.4 | CDS | 84078718 | 84078945 | 84078718 | ID=cds.MS.gene013560.t1;Parent=MS.gene013560.t1 |
| Gene Sequence |
| Protein sequence |
