Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71872.t1 | XP_013464647.1 | 96.9 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 2.40E-67 | 264.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71872.t1 | Q9FN32 | 77.5 | 129 | 29 | 0 | 1 | 129 | 1 | 129 | 3.6e-56 | 218.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71872.t1 | A0A072VA37 | 96.9 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 1.7e-67 | 264.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059765 | MS.gene71872 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene060686 | MS.gene71872 | 0.996255 | 2.98E-225 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06887 | MS.gene71872 | PPI |
| MS.gene71872 | MS.gene057133 | PPI |
| MS.gene69238 | MS.gene71872 | PPI |
| MS.gene06671 | MS.gene71872 | PPI |
| MS.gene71872 | MS.gene06889 | PPI |
| MS.gene057330 | MS.gene71872 | PPI |
| MS.gene013560 | MS.gene71872 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71872.t1 | MTR_2g078670 | 96.899 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 1.93e-92 | 263 |
| MS.gene71872.t1 | MTR_8g058785 | 72.656 | 128 | 35 | 0 | 1 | 128 | 1 | 128 | 2.17e-64 | 192 |
| MS.gene71872.t1 | MTR_8g061270 | 72.656 | 128 | 35 | 0 | 1 | 128 | 1 | 128 | 2.17e-64 | 192 |
| MS.gene71872.t1 | MTR_4g088505 | 65.891 | 129 | 42 | 1 | 1 | 129 | 1 | 127 | 4.99e-60 | 181 |
| MS.gene71872.t1 | MTR_3g070330 | 57.812 | 128 | 54 | 0 | 1 | 128 | 24 | 151 | 4.57e-51 | 159 |
| MS.gene71872.t1 | MTR_7g068250 | 56.589 | 129 | 47 | 1 | 1 | 129 | 1 | 120 | 2.85e-49 | 153 |
| MS.gene71872.t1 | MTR_3g070330 | 66.667 | 102 | 34 | 0 | 1 | 102 | 24 | 125 | 1.33e-48 | 152 |
| MS.gene71872.t1 | MTR_5g082490 | 56.589 | 129 | 56 | 0 | 1 | 129 | 1 | 129 | 2.76e-47 | 149 |
| MS.gene71872.t1 | MTR_4g088505 | 70.588 | 85 | 25 | 0 | 1 | 85 | 1 | 85 | 5.76e-42 | 135 |
| MS.gene71872.t1 | MTR_3g091840 | 56.842 | 95 | 41 | 0 | 12 | 106 | 8 | 102 | 3.42e-35 | 117 |
| MS.gene71872.t1 | MTR_8g027255 | 49.474 | 95 | 48 | 0 | 12 | 106 | 8 | 102 | 5.01e-29 | 102 |
| MS.gene71872.t1 | MTR_1g077750 | 50.000 | 84 | 42 | 0 | 12 | 95 | 8 | 91 | 2.79e-28 | 100 |
| MS.gene71872.t1 | MTR_1g077760 | 46.296 | 54 | 29 | 0 | 48 | 101 | 1 | 54 | 7.21e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71872.t1 | AT5G53940 | 77.519 | 129 | 29 | 0 | 1 | 129 | 1 | 129 | 1.90e-74 | 217 |
| MS.gene71872.t1 | AT2G40110 | 56.061 | 132 | 53 | 2 | 1 | 129 | 1 | 130 | 8.86e-51 | 157 |
| MS.gene71872.t1 | AT2G40110 | 65.686 | 102 | 35 | 0 | 1 | 102 | 1 | 102 | 1.54e-48 | 151 |
| MS.gene71872.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 6.13e-48 | 150 |
| MS.gene71872.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 6.13e-48 | 150 |
| MS.gene71872.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 6.13e-48 | 150 |
| MS.gene71872.t1 | AT3G11230 | 60.952 | 105 | 41 | 0 | 1 | 105 | 1 | 105 | 7.76e-45 | 142 |
| MS.gene71872.t1 | AT3G55890 | 53.488 | 129 | 52 | 1 | 1 | 129 | 1 | 121 | 1.09e-44 | 142 |
| MS.gene71872.t1 | AT3G55890 | 53.488 | 129 | 52 | 1 | 1 | 129 | 1 | 121 | 1.09e-44 | 142 |
| MS.gene71872.t1 | AT3G11230 | 60.952 | 105 | 41 | 0 | 1 | 105 | 34 | 138 | 1.58e-44 | 143 |
| MS.gene71872.t1 | AT3G11230 | 62.745 | 102 | 38 | 0 | 1 | 102 | 1 | 102 | 2.12e-44 | 140 |
| MS.gene71872.t1 | AT3G11230 | 62.745 | 102 | 38 | 0 | 1 | 102 | 34 | 135 | 3.71e-44 | 141 |
| MS.gene71872.t1 | AT3G55890 | 60.396 | 101 | 40 | 0 | 1 | 101 | 1 | 101 | 3.69e-43 | 137 |
| MS.gene71872.t1 | AT3G55890 | 60.396 | 101 | 40 | 0 | 1 | 101 | 1 | 101 | 3.69e-43 | 137 |
| MS.gene71872.t1 | AT2G40110 | 61.176 | 85 | 33 | 0 | 1 | 85 | 1 | 85 | 2.34e-36 | 120 |
| MS.gene71872.t1 | AT2G40110 | 61.176 | 85 | 33 | 0 | 1 | 85 | 1 | 85 | 2.34e-36 | 120 |
| MS.gene71872.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 8.62e-34 | 114 |
| MS.gene71872.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 8.62e-34 | 114 |
| MS.gene71872.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 8.62e-34 | 114 |
| MS.gene71872.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 8.62e-34 | 114 |
| MS.gene71872.t1 | AT4G27740 | 40.860 | 93 | 55 | 0 | 13 | 105 | 9 | 101 | 3.12e-23 | 87.4 |
Find 34 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAAGGATGATGCTTTC+AGG | 0.218365 | 2.2:+16008645 | MS.gene71872:CDS |
| TCTTTCAGGCGTTTCATTGC+CGG | 0.300182 | 2.2:+16007199 | MS.gene71872:intron |
| CAAATTCTGCAGAACTCATT+TGG | 0.346439 | 2.2:+16005741 | MS.gene71872:CDS |
| TGAGAAGAGTCAGAAGTATA+AGG | 0.380438 | 2.2:+16008834 | MS.gene71872:CDS |
| TCTGCAGAATTTGCATCTAT+AGG | 0.389978 | 2.2:-16005731 | None:intergenic |
| GTACTCACGCTTTACTGAAT+AGG | 0.399679 | 2.2:-16007236 | None:intergenic |
| TCCAGCGTGAACACCACAAC+TGG | 0.413680 | 2.2:+16008615 | MS.gene71872:intron |
| TGTTGCTGTGGTCAAATAGT+TGG | 0.420731 | 2.2:+16008696 | MS.gene71872:CDS |
| TTGTAGATGATCTCATTTCT+CGG | 0.425950 | 2.2:+16005767 | MS.gene71872:CDS |
| AAGAATCTTTGTGGTGGAGC+TGG | 0.437208 | 2.2:+16005699 | MS.gene71872:CDS |
| TTGTGGTGGAGCTGGAGGGC+AGG | 0.462348 | 2.2:+16005707 | MS.gene71872:CDS |
| AAGGGAAGTTTGTTCTTGAA+AGG | 0.474035 | 2.2:+16008857 | MS.gene71872:CDS |
| TTCCACCGGTGTTCCAGTTG+TGG | 0.476609 | 2.2:-16008628 | None:intergenic |
| AGGCGTTTCATTGCCGGAGG+GGG | 0.483191 | 2.2:+16007205 | MS.gene71872:intron |
| TGTAGATGATCTCATTTCTC+GGG | 0.483711 | 2.2:+16005768 | MS.gene71872:CDS |
| AAGAGTCAGAAGTATAAGGA+AGG | 0.484139 | 2.2:+16008838 | MS.gene71872:CDS |
| GAAAATGGGAAGAATCTTTG+TGG | 0.515998 | 2.2:+16005690 | None:intergenic |
| GAACACCACAACTGGAACAC+CGG | 0.528250 | 2.2:+16008623 | MS.gene71872:CDS |
| AATCTTTGTGGTGGAGCTGG+AGG | 0.548296 | 2.2:+16005702 | MS.gene71872:CDS |
| CAACTGGAACACCGGTGGAA+AGG | 0.551344 | 2.2:+16008631 | MS.gene71872:CDS |
| TTCAGGCGTTTCATTGCCGG+AGG | 0.558342 | 2.2:+16007202 | MS.gene71872:intron |
| AGAGTCAGAAGTATAAGGAA+GGG | 0.561728 | 2.2:+16008839 | MS.gene71872:CDS |
| ATCTTTGTGGTGGAGCTGGA+GGG | 0.585005 | 2.2:+16005703 | MS.gene71872:CDS |
| CACCACAACTGGAACACCGG+TGG | 0.593979 | 2.2:+16008626 | MS.gene71872:CDS |
| GAAAGCATCATCCTTTCCAC+CGG | 0.594762 | 2.2:-16008642 | None:intergenic |
| GAGAAATGAGATCATCTACA+AGG | 0.595304 | 2.2:-16005765 | None:intergenic |
| CAGGCGTTTCATTGCCGGAG+GGG | 0.602593 | 2.2:+16007204 | MS.gene71872:intron |
| TGACAATGTTGATTCCTCAA+CGG | 0.605876 | 2.2:+16009010 | MS.gene71872:CDS |
| GCTGTGGTCAAATAGTTGGC+TGG | 0.614432 | 2.2:+16008700 | MS.gene71872:CDS |
| AGTCATGTCAGCATGAGTGA+TGG | 0.619256 | 2.2:+16009047 | MS.gene71872:CDS |
| TCAGGCGTTTCATTGCCGGA+GGG | 0.624574 | 2.2:+16007203 | MS.gene71872:intron |
| AATGGGAAGAATCTTTGTGG+TGG | 0.654666 | 2.2:+16005693 | None:intergenic |
| AGAAATGAGATCATCTACAA+GGG | 0.674311 | 2.2:-16005764 | None:intergenic |
| GCTTTCAGGATTGCATACTG+TGG | 0.726768 | 2.2:+16008659 | MS.gene71872:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAAAAAATTCAATTTTT+AGG | + | chr2.2:16006686-16006705 | MS.gene71872:intron | 10.0% |
| !! | AGTAAATTCTTAATTATCAA+AGG | + | chr2.2:16005942-16005961 | MS.gene71872:intron | 15.0% |
| !! | CAACAAAAAAACAAAAAATA+TGG | - | chr2.2:16006066-16006085 | None:intergenic | 15.0% |
| !! | TACAAAATTGTTTAATTCTT+AGG | + | chr2.2:16007712-16007731 | MS.gene71872:intron | 15.0% |
| !!! | AAATATTGACCTTTTTTATT+TGG | + | chr2.2:16007988-16008007 | MS.gene71872:intron | 15.0% |
| !!! | AATAAAAAAGGTCAATATTT+TGG | - | chr2.2:16007988-16008007 | None:intergenic | 15.0% |
| !!! | GATAACAATTTTAAAACAAA+GGG | - | chr2.2:16007845-16007864 | None:intergenic | 15.0% |
| !!! | GTGAATTTTTTCTTATTATA+AGG | + | chr2.2:16006780-16006799 | MS.gene71872:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+TGG | + | chr2.2:16006386-16006405 | MS.gene71872:intron | 15.0% |
| !!! | TTTTAGTTAATCTTTTTCTT+TGG | + | chr2.2:16007911-16007930 | MS.gene71872:intron | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | + | chr2.2:16008248-16008267 | MS.gene71872:intron | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | - | chr2.2:16008267-16008248 | None:intergenic | 15.0% |
| !! | AAAATAAAAAAATTGACACG+TGG | + | chr2.2:16008135-16008154 | MS.gene71872:intron | 20.0% |
| !! | ACATGAAGTAAAAGAAAATT+AGG | + | chr2.2:16008492-16008511 | MS.gene71872:intron | 20.0% |
| !! | AGTGATAGTTTAAAAAGTAA+AGG | - | chr2.2:16005801-16005820 | None:intergenic | 20.0% |
| !! | CATGAAGTAAAAGAAAATTA+GGG | + | chr2.2:16008493-16008512 | MS.gene71872:intron | 20.0% |
| !! | GAAAAAGATTAACTAAAACA+TGG | - | chr2.2:16007909-16007928 | None:intergenic | 20.0% |
| !! | GTGATAGTTTAAAAAGTAAA+GGG | - | chr2.2:16005800-16005819 | None:intergenic | 20.0% |
| !! | TTGATAGAAGAGAAATAAAA+AGG | - | chr2.2:16008324-16008343 | None:intergenic | 20.0% |
| !!! | ATCAGTATTTTGATCTAATT+GGG | - | chr2.2:16006422-16006441 | None:intergenic | 20.0% |
| !!! | CGATAACAATTTTAAAACAA+AGG | - | chr2.2:16007846-16007865 | None:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | + | chr2.2:16008247-16008266 | MS.gene71872:intron | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | - | chr2.2:16008266-16008247 | None:intergenic | 20.0% |
| !!! | TTCATTTCTTTTCAATACTA+GGG | + | chr2.2:16006024-16006043 | MS.gene71872:intron | 20.0% |
| !!! | TTTATTTTTTTTTGCCTTGA+GGG | - | chr2.2:16008123-16008142 | None:intergenic | 20.0% |
| !!! | TTTCATTTCTTTTCAATACT+AGG | + | chr2.2:16006023-16006042 | MS.gene71872:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | + | chr2.2:16008249-16008268 | MS.gene71872:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | - | chr2.2:16008268-16008249 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTTTTGCCTTG+AGG | - | chr2.2:16008124-16008143 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTATTATAAGGAC+CGG | + | chr2.2:16006785-16006804 | MS.gene71872:intron | 20.0% |
| ! | AAATTTAGATGGAGTGAAAA+AGG | - | chr2.2:16008740-16008759 | None:intergenic | 25.0% |
| ! | AATATGGTGAATATACTAGA+AGG | - | chr2.2:16006050-16006069 | None:intergenic | 25.0% |
| ! | ACAGTTACATGAAATTTAGA+TGG | - | chr2.2:16008751-16008770 | None:intergenic | 25.0% |
| ! | AGCTAAATTATTACTTCCAA+AGG | + | chr2.2:16007070-16007089 | MS.gene71872:intron | 25.0% |
| ! | CAATTAGATCAAAATACTGA+TGG | + | chr2.2:16006421-16006440 | MS.gene71872:intron | 25.0% |
| ! | CATTGAATAACTAGTGTATT+TGG | - | chr2.2:16006750-16006769 | None:intergenic | 25.0% |
| ! | CTAGACTAAAACAAAACAAA+AGG | - | chr2.2:16006494-16006513 | None:intergenic | 25.0% |
| ! | GCAATTAAGCCAAATAAAAA+AGG | - | chr2.2:16008000-16008019 | None:intergenic | 25.0% |
| ! | GTCAATAACATAGAAACATT+AGG | - | chr2.2:16007519-16007538 | None:intergenic | 25.0% |
| ! | GTTATTATTCTATGTGCTTA+AGG | + | chr2.2:16006310-16006329 | MS.gene71872:intron | 25.0% |
| ! | TAGTGAGCAAATAAAGTTAT+TGG | - | chr2.2:16007777-16007796 | None:intergenic | 25.0% |
| ! | TGCAAATAATCCAGAAAATA+TGG | + | chr2.2:16007413-16007432 | MS.gene71872:intron | 25.0% |
| ! | TGGCTATCAAAATTCTTAAT+GGG | + | chr2.2:16006527-16006546 | MS.gene71872:intron | 25.0% |
| ! | TTCTTGTAATAGAAACGATA+GGG | - | chr2.2:16006670-16006689 | None:intergenic | 25.0% |
| ! | TTGGCTATCAAAATTCTTAA+TGG | + | chr2.2:16006526-16006545 | MS.gene71872:intron | 25.0% |
| ! | TTTAGTAAATGATGTACCTA+GGG | + | chr2.2:16007743-16007762 | MS.gene71872:intron | 25.0% |
| ! | TTTCTTGTAATAGAAACGAT+AGG | - | chr2.2:16006671-16006690 | None:intergenic | 25.0% |
| !! | TCAATATAAGTGCCTATTTT+TGG | + | chr2.2:16008340-16008359 | MS.gene71872:intron | 25.0% |
| !!! | ACATTCAAGATAGTTTTGTT+TGG | + | chr2.2:16007304-16007323 | MS.gene71872:intron | 25.0% |
| !!! | AGTATTGATTATGTTTCAGT+AGG | + | chr2.2:16006836-16006855 | MS.gene71872:intron | 25.0% |
| !!! | CATCAGTATTTTGATCTAAT+TGG | - | chr2.2:16006423-16006442 | None:intergenic | 25.0% |
| !!! | GTCTGTTTGTTTTTTTTTGT+CGG | + | chr2.2:16007033-16007052 | MS.gene71872:intron | 25.0% |
| !!! | GTTTTGTTTGGTAACATAAA+AGG | + | chr2.2:16007316-16007335 | MS.gene71872:intron | 25.0% |
| !!! | TCTGTTTGTTTTTTTTTGTC+GGG | + | chr2.2:16007034-16007053 | MS.gene71872:intron | 25.0% |
| !!! | TGTTTTGTTTTAGTCTAGTT+CGG | + | chr2.2:16006496-16006515 | MS.gene71872:intron | 25.0% |
| !!! | TTATTTTTTTTTGCCTTGAG+GGG | - | chr2.2:16008122-16008141 | None:intergenic | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | + | chr2.2:16008250-16008269 | MS.gene71872:intron | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | - | chr2.2:16008269-16008250 | None:intergenic | 25.0% |
| AAACCAAGAAAAATCAAGAC+TGG | - | chr2.2:16007101-16007120 | None:intergenic | 30.0% | |
| AACCAAGAAAAATCAAGACT+GGG | - | chr2.2:16007100-16007119 | None:intergenic | 30.0% | |
| AAGGGTGATCAAAGATTATA+AGG | - | chr2.2:16007180-16007199 | None:intergenic | 30.0% | |
| AATCTTCTCATGATAGGTTT+AGG | + | chr2.2:16006633-16006652 | MS.gene71872:intron | 30.0% | |
| AATGTAAAAGGGAATGCTTA+TGG | - | chr2.2:16006107-16006126 | None:intergenic | 30.0% | |
| AATTCTTCACTACTTTCTTG+CGG | + | chr2.2:16006900-16006919 | MS.gene71872:intron | 30.0% | |
| AGAAATGAGATCATCTACAA+GGG | - | chr2.2:16005767-16005786 | None:intergenic | 30.0% | |
| ATAATTTACTATTCCCTCTC+AGG | + | chr2.2:16008801-16008820 | MS.gene71872:intron | 30.0% | |
| ATATGCAAGATATGCACAAT+AGG | - | chr2.2:16008961-16008980 | None:intergenic | 30.0% | |
| ATATTATGTAGTCGCTATCT+TGG | + | chr2.2:16008895-16008914 | MS.gene71872:intron | 30.0% | |
| ATCGATAAAAAATTCCGTTG+AGG | - | chr2.2:16009027-16009046 | None:intergenic | 30.0% | |
| ATGTAAAAGGGAATGCTTAT+GGG | - | chr2.2:16006106-16006125 | None:intergenic | 30.0% | |
| ATTTGCTCACTATTCAAAAC+AGG | + | chr2.2:16007785-16007804 | MS.gene71872:intron | 30.0% | |
| CATGCGAAAATTCCAAAAAT+AGG | - | chr2.2:16008355-16008374 | None:intergenic | 30.0% | |
| CTTTAGTAAATGATGTACCT+AGG | + | chr2.2:16007742-16007761 | MS.gene71872:intron | 30.0% | |
| GAATGTAACCACATATTGTT+GGG | - | chr2.2:16006353-16006372 | None:intergenic | 30.0% | |
| GAGTACATTTCAGTTCTTAT+TGG | + | chr2.2:16007253-16007272 | MS.gene71872:intron | 30.0% | |
| GTGAACAAGATATGTTACAT+AGG | - | chr2.2:16008474-16008493 | None:intergenic | 30.0% | |
| TAGATCAAAATACTGATGGT+TGG | + | chr2.2:16006425-16006444 | MS.gene71872:intron | 30.0% | |
| TATGGGAAGACAATAACTAA+AGG | - | chr2.2:16006089-16006108 | None:intergenic | 30.0% | |
| TATGTTGATACATACAACAG+AGG | + | chr2.2:16008978-16008997 | MS.gene71872:intron | 30.0% | |
| TATGTTGTATAGCACTCTAA+GGG | + | chr2.2:16006604-16006623 | MS.gene71872:intron | 30.0% | |
| TGAATATTCTATACTCTCTC+TGG | + | chr2.2:16008568-16008587 | MS.gene71872:intron | 30.0% | |
| TGAATGTAACCACATATTGT+TGG | - | chr2.2:16006354-16006373 | None:intergenic | 30.0% | |
| TGCTACATTTGCAAAACTTA+GGG | - | chr2.2:16008092-16008111 | None:intergenic | 30.0% | |
| TGTTGGACAATTTATAAGTG+AGG | + | chr2.2:16006208-16006227 | MS.gene71872:intron | 30.0% | |
| TTATGTTGTATAGCACTCTA+AGG | + | chr2.2:16006603-16006622 | MS.gene71872:intron | 30.0% | |
| TTGTAGATGATCTCATTTCT+CGG | + | chr2.2:16005767-16005786 | MS.gene71872:CDS | 30.0% | |
| ! | AACATGACTACCATATTTTC+TGG | - | chr2.2:16007426-16007445 | None:intergenic | 30.0% |
| ! | AGAGAGAGTATAGAATATTC+AGG | - | chr2.2:16008569-16008588 | None:intergenic | 30.0% |
| ! | AGTCTAGTTCGGATATAAAT+TGG | + | chr2.2:16006507-16006526 | MS.gene71872:intron | 30.0% |
| ! | GTAACATAAAAGGCTTTTTG+TGG | + | chr2.2:16007326-16007345 | MS.gene71872:intron | 30.0% |
| ! | TTTTGCAAATGTAGCAGTTT+TGG | + | chr2.2:16008096-16008115 | MS.gene71872:intron | 30.0% |
| !!! | TTGTTTTTTTTTGTCGGGAT+GGG | + | chr2.2:16007039-16007058 | MS.gene71872:intron | 30.0% |
| !!! | TTTGTTTTTTTTTGTCGGGA+TGG | + | chr2.2:16007038-16007057 | MS.gene71872:intron | 30.0% |
| !!! | TTTTTGGAATTTTCGCATGA+TGG | + | chr2.2:16008356-16008375 | MS.gene71872:intron | 30.0% |
| AGAAAAAGATGGATACACCA+GGG | - | chr2.2:16006932-16006951 | None:intergenic | 35.0% | |
| ATGATGGTAAAAACCTTTGG+AGG | + | chr2.2:16008372-16008391 | MS.gene71872:intron | 35.0% | |
| ATGTTGTATAGCACTCTAAG+GGG | + | chr2.2:16006605-16006624 | MS.gene71872:intron | 35.0% | |
| CAAATTCTGCAGAACTCATT+TGG | + | chr2.2:16005741-16005760 | MS.gene71872:CDS | 35.0% | |
| CAGCTCGTATGTTATTATTC+GGG | - | chr2.2:16007575-16007594 | None:intergenic | 35.0% | |
| CCAAATATACCAGTTACTCA+AGG | - | chr2.2:16006714-16006733 | None:intergenic | 35.0% | |
| CCAGCTCGTATGTTATTATT+CGG | - | chr2.2:16007576-16007595 | None:intergenic | 35.0% | |
| CCTTGAGTAACTGGTATATT+TGG | + | chr2.2:16006711-16006730 | MS.gene71872:intron | 35.0% | |
| CTACATTTGCAAAACTTAGG+GGG | - | chr2.2:16008090-16008109 | None:intergenic | 35.0% | |
| CTGCTACATTTGCAAAACTT+AGG | - | chr2.2:16008093-16008112 | None:intergenic | 35.0% | |
| GAGAAATGAGATCATCTACA+AGG | - | chr2.2:16005768-16005787 | None:intergenic | 35.0% | |
| GCTACATTTGCAAAACTTAG+GGG | - | chr2.2:16008091-16008110 | None:intergenic | 35.0% | |
| GGCATTAATCTTCTCATGAT+AGG | + | chr2.2:16006627-16006646 | MS.gene71872:intron | 35.0% | |
| GTCTAGAAGGAAAATAAAGC+TGG | + | chr2.2:16008404-16008423 | MS.gene71872:intron | 35.0% | |
| TAGATGCAATGCAACATTTG+AGG | - | chr2.2:16007680-16007699 | None:intergenic | 35.0% | |
| TCTGCAGAATTTGCATCTAT+AGG | - | chr2.2:16005734-16005753 | None:intergenic | 35.0% | |
| TGTAGATGATCTCATTTCTC+GGG | + | chr2.2:16005768-16005787 | MS.gene71872:CDS | 35.0% | |
| TGTCAAAACAATACTTCCTC+CGG | - | chr2.2:16006807-16006826 | None:intergenic | 35.0% | |
| TTGATACATACAACAGAGGA+AGG | + | chr2.2:16008982-16009001 | MS.gene71872:intron | 35.0% | |
| TTTCTTATTATAAGGACCGG+AGG | + | chr2.2:16006788-16006807 | MS.gene71872:intron | 35.0% | |
| TTTGGCGATCATATAATAGC+TGG | - | chr2.2:16007970-16007989 | None:intergenic | 35.0% | |
| ! | AAGAGTCAGAAGTATAAGGA+AGG | + | chr2.2:16008838-16008857 | MS.gene71872:CDS | 35.0% |
| ! | AAGGGAAGTTTGTTCTTGAA+AGG | + | chr2.2:16008857-16008876 | MS.gene71872:CDS | 35.0% |
| ! | ACACCTTTTGGCAATGTAAA+AGG | - | chr2.2:16006119-16006138 | None:intergenic | 35.0% |
| ! | AGAGTCAGAAGTATAAGGAA+GGG | + | chr2.2:16008839-16008858 | MS.gene71872:CDS | 35.0% |
| ! | CACCTTTTGGCAATGTAAAA+GGG | - | chr2.2:16006118-16006137 | None:intergenic | 35.0% |
| ! | CTCTGGTATGCTTATGTTTT+GGG | + | chr2.2:16008585-16008604 | MS.gene71872:intron | 35.0% |
| ! | TCATGCTGAATGCATGTTTT+AGG | - | chr2.2:16007382-16007401 | None:intergenic | 35.0% |
| ! | TCTCTGGTATGCTTATGTTT+TGG | + | chr2.2:16008584-16008603 | MS.gene71872:intron | 35.0% |
| ! | TGAGAAGAGTCAGAAGTATA+AGG | + | chr2.2:16008834-16008853 | MS.gene71872:CDS | 35.0% |
| ! | TTCCCTTTTACATTGCCAAA+AGG | + | chr2.2:16006113-16006132 | MS.gene71872:intron | 35.0% |
| !! | CAGTCAATTTTAGTCACTGA+TGG | - | chr2.2:16007284-16007303 | None:intergenic | 35.0% |
| !! | CATTAGGCTAGTTTGTATTG+TGG | - | chr2.2:16007503-16007522 | None:intergenic | 35.0% |
| !! | TGACAATGTTGATTCCTCAA+CGG | + | chr2.2:16009010-16009029 | MS.gene71872:CDS | 35.0% |
| !!! | TTTTAGGTTCCTTGAGTAAC+TGG | + | chr2.2:16006702-16006721 | MS.gene71872:intron | 35.0% |
| AAACCACTACTACAGATCAC+AGG | - | chr2.2:16006006-16006025 | None:intergenic | 40.0% | |
| AACCACTACTACAGATCACA+GGG | - | chr2.2:16006005-16006024 | None:intergenic | 40.0% | |
| ACCGAGTCAAAATTGGCATT+GGG | + | chr2.2:16008188-16008207 | MS.gene71872:intron | 40.0% | |
| AGTAGACAGTGGTTATGCAT+AGG | + | chr2.2:16006556-16006575 | MS.gene71872:intron | 40.0% | |
| ATTGGATGTGATGTGAGTGT+TGG | + | chr2.2:16006191-16006210 | MS.gene71872:intron | 40.0% | |
| CAATAATCCAGCAGAGAAGT+TGG | - | chr2.2:16007151-16007170 | None:intergenic | 40.0% | |
| CAATGAAACGCCTGAAAGAA+GGG | - | chr2.2:16007198-16007217 | None:intergenic | 40.0% | |
| CAGAAAAAGATGGATACACC+AGG | - | chr2.2:16006933-16006952 | None:intergenic | 40.0% | |
| CCGAATAATAACATACGAGC+TGG | + | chr2.2:16007573-16007592 | MS.gene71872:intron | 40.0% | |
| CGCATGATGGTAAAAACCTT+TGG | + | chr2.2:16008369-16008388 | MS.gene71872:intron | 40.0% | |
| GAAAAAGATGGATACACCAG+GGG | - | chr2.2:16006931-16006950 | None:intergenic | 40.0% | |
| GTACTCACGCTTTACTGAAT+AGG | - | chr2.2:16007239-16007258 | None:intergenic | 40.0% | |
| TCTTTGATCACCCTTCTTTC+AGG | + | chr2.2:16007185-16007204 | MS.gene71872:intron | 40.0% | |
| TGATGTGACCCAACAATATG+TGG | + | chr2.2:16006342-16006361 | MS.gene71872:intron | 40.0% | |
| TGCCACAGTTGCAAAACATA+GGG | + | chr2.2:16008220-16008239 | MS.gene71872:intron | 40.0% | |
| TGTTGCTGTGGTCAAATAGT+TGG | + | chr2.2:16008696-16008715 | MS.gene71872:CDS | 40.0% | |
| ! | ATCGCAACTTTGGGAAAGTT+AGG | + | chr2.2:16008278-16008297 | MS.gene71872:intron | 40.0% |
| ! | ATCGCAACTTTGGGAAAGTT+AGG | - | chr2.2:16008297-16008278 | None:intergenic | 40.0% |
| ! | CAAAATACTGATGGTTGGCT+TGG | + | chr2.2:16006430-16006449 | MS.gene71872:intron | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | + | chr2.2:16008036-16008055 | MS.gene71872:intron | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | - | chr2.2:16008055-16008036 | None:intergenic | 40.0% |
| ! | GGTGTATCCATCTTTTTCTG+TGG | + | chr2.2:16006933-16006952 | MS.gene71872:intron | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+GGG | + | chr2.2:16008279-16008298 | MS.gene71872:intron | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+GGG | - | chr2.2:16008298-16008279 | None:intergenic | 40.0% |
| ! | TGCCCAGTCTTGATTTTTCT+TGG | + | chr2.2:16007095-16007114 | MS.gene71872:intron | 40.0% |
| ! | TGGTAAAAACCTTTGGAGGA+AGG | + | chr2.2:16008376-16008395 | MS.gene71872:intron | 40.0% |
| ! | TGTTGTATAGCACTCTAAGG+GGG | + | chr2.2:16006606-16006625 | MS.gene71872:intron | 40.0% |
| ! | TTTTGCAACTGTGGCAGTTT+TGG | - | chr2.2:16008216-16008235 | None:intergenic | 40.0% |
| !!! | GATATCTTTTGCTGTTGCTG+TGG | + | chr2.2:16008684-16008703 | MS.gene71872:CDS | 40.0% |
| AGACATGTTCCTTCCTCCAA+AGG | - | chr2.2:16008388-16008407 | None:intergenic | 45.0% | |
| AGCGTAGACCGAGTCAAAAT+TGG | + | chr2.2:16008181-16008200 | MS.gene71872:intron | 45.0% | |
| AGTCATGTCAGCATGAGTGA+TGG | + | chr2.2:16009047-16009066 | MS.gene71872:CDS | 45.0% | |
| ATGGGACACTAAGTAGACAG+TGG | + | chr2.2:16006545-16006564 | MS.gene71872:intron | 45.0% | |
| CAAGTTTCCAACTTCTCTGC+TGG | + | chr2.2:16007141-16007160 | MS.gene71872:intron | 45.0% | |
| CATAGTGCAGTGTTACACTG+TGG | + | chr2.2:16007633-16007652 | MS.gene71872:intron | 45.0% | |
| CATTTGCAAAACTTAGGGGG+CGG | - | chr2.2:16008087-16008106 | None:intergenic | 45.0% | |
| CCACAGTTGCAAAACATAGG+GGG | + | chr2.2:16008222-16008241 | MS.gene71872:intron | 45.0% | |
| CCGAGTCAAAATTGGCATTG+GGG | + | chr2.2:16008189-16008208 | MS.gene71872:intron | 45.0% | |
| CGAGTAAAGGAGTCTCACAT+TGG | + | chr2.2:16006173-16006192 | MS.gene71872:intron | 45.0% | |
| CTGCCACAGTTGCAAAACAT+AGG | + | chr2.2:16008219-16008238 | MS.gene71872:intron | 45.0% | |
| GACACTGCCACAGAAAAAGA+TGG | - | chr2.2:16006943-16006962 | None:intergenic | 45.0% | |
| GACCGAGTCAAAATTGGCAT+TGG | + | chr2.2:16008187-16008206 | MS.gene71872:intron | 45.0% | |
| GAGGAAGGAACATGTCTAGA+AGG | + | chr2.2:16008391-16008410 | MS.gene71872:intron | 45.0% | |
| GCAATGAAACGCCTGAAAGA+AGG | - | chr2.2:16007199-16007218 | None:intergenic | 45.0% | |
| GCCACAGTTGCAAAACATAG+GGG | + | chr2.2:16008221-16008240 | MS.gene71872:intron | 45.0% | |
| GCTGCAAGAGTCATTGACAA+TGG | + | chr2.2:16006452-16006471 | MS.gene71872:intron | 45.0% | |
| GCTTTCAGGATTGCATACTG+TGG | + | chr2.2:16008659-16008678 | MS.gene71872:CDS | 45.0% | |
| GGTTGTGCTACATCTAGTCA+TGG | + | chr2.2:16007654-16007673 | MS.gene71872:intron | 45.0% | |
| GTGGAAAGGATGATGCTTTC+AGG | + | chr2.2:16008645-16008664 | MS.gene71872:CDS | 45.0% | |
| GTTCGATGTCTGACATGTGT+TGG | + | chr2.2:16006139-16006158 | MS.gene71872:intron | 45.0% | |
| TCATGTGCAGATTCCTGAGA+GGG | - | chr2.2:16008817-16008836 | None:intergenic | 45.0% | |
| TCTTTCAGGCGTTTCATTGC+CGG | + | chr2.2:16007199-16007218 | MS.gene71872:intron | 45.0% | |
| ! | AAGAATCTTTGTGGTGGAGC+TGG | + | chr2.2:16005699-16005718 | MS.gene71872:CDS | 45.0% |
| ! | CAGACATCGAACACACCTTT+TGG | - | chr2.2:16006131-16006150 | None:intergenic | 45.0% |
| ! | CGAGTCAAAATTGGCATTGG+GGG | + | chr2.2:16008190-16008209 | MS.gene71872:intron | 45.0% |
| ! | CGCAACTTTGGGAAAGTTAG+GGG | + | chr2.2:16008280-16008299 | MS.gene71872:intron | 45.0% |
| ! | CGCAACTTTGGGAAAGTTAG+GGG | - | chr2.2:16008299-16008280 | None:intergenic | 45.0% |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | + | chr2.2:16008281-16008300 | MS.gene71872:intron | 45.0% |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | - | chr2.2:16008300-16008281 | None:intergenic | 45.0% |
| !! | GAAAGCATCATCCTTTCCAC+CGG | - | chr2.2:16008645-16008664 | None:intergenic | 45.0% |
| !! | GTTATTGGCTTCACTTCCCT+AGG | - | chr2.2:16007762-16007781 | None:intergenic | 45.0% |
| !!! | CCCCAATGCCAATTTTGACT+CGG | - | chr2.2:16008192-16008211 | None:intergenic | 45.0% |
| ATCAAGACTGGGCATGCCTT+TGG | - | chr2.2:16007089-16007108 | None:intergenic | 50.0% | |
| CACCCTGTGATCTGTAGTAG+TGG | + | chr2.2:16006000-16006019 | MS.gene71872:intron | 50.0% | |
| CACTACTACAGATCACAGGG+TGG | - | chr2.2:16006002-16006021 | None:intergenic | 50.0% | |
| CAGTTGCAAAACATAGGGGG+CGG | + | chr2.2:16008225-16008244 | MS.gene71872:intron | 50.0% | |
| CTCATGTGCAGATTCCTGAG+AGG | - | chr2.2:16008818-16008837 | None:intergenic | 50.0% | |
| CTGATGTGGAACCCTAAGTG+AGG | - | chr2.2:16008163-16008182 | None:intergenic | 50.0% | |
| GAACACCACAACTGGAACAC+CGG | + | chr2.2:16008623-16008642 | MS.gene71872:CDS | 50.0% | |
| GCTGTGGTCAAATAGTTGGC+TGG | + | chr2.2:16008700-16008719 | MS.gene71872:CDS | 50.0% | |
| GGGGCCAAAATCGCAACTTT+GGG | + | chr2.2:16008269-16008288 | MS.gene71872:intron | 50.0% | |
| GGGGCCAAAATCGCAACTTT+GGG | - | chr2.2:16008288-16008269 | None:intergenic | 50.0% | |
| GGTTTGTCACGTGCGAGTAA+AGG | + | chr2.2:16006160-16006179 | MS.gene71872:intron | 50.0% | |
| ! | AATCTTTGTGGTGGAGCTGG+AGG | + | chr2.2:16005702-16005721 | MS.gene71872:CDS | 50.0% |
| ! | ATCTTTGTGGTGGAGCTGGA+GGG | + | chr2.2:16005703-16005722 | MS.gene71872:CDS | 50.0% |
| ! | CCCCCTATGTTTTGCAACTG+TGG | - | chr2.2:16008225-16008244 | None:intergenic | 50.0% |
| ATAGGTATGCGTTCCCCCTC+CGG | - | chr2.2:16007221-16007240 | None:intergenic | 55.0% | |
| CAACTGGAACACCGGTGGAA+AGG | + | chr2.2:16008631-16008650 | MS.gene71872:CDS | 55.0% | |
| GACACGTGGCACCTCACTTA+GGG | + | chr2.2:16008149-16008168 | MS.gene71872:intron | 55.0% | |
| GGGGGCCAAAATCGCAACTT+TGG | + | chr2.2:16008268-16008287 | MS.gene71872:intron | 55.0% | |
| GGGGGCCAAAATCGCAACTT+TGG | - | chr2.2:16008287-16008268 | None:intergenic | 55.0% | |
| TCAGGCGTTTCATTGCCGGA+GGG | + | chr2.2:16007203-16007222 | MS.gene71872:intron | 55.0% | |
| TCCAGCGTGAACACCACAAC+TGG | + | chr2.2:16008615-16008634 | MS.gene71872:intron | 55.0% | |
| TCCAGTTGTGGTGTTCACGC+TGG | - | chr2.2:16008619-16008638 | None:intergenic | 55.0% | |
| TGACACGTGGCACCTCACTT+AGG | + | chr2.2:16008148-16008167 | MS.gene71872:intron | 55.0% | |
| TTCAGGCGTTTCATTGCCGG+AGG | + | chr2.2:16007202-16007221 | MS.gene71872:intron | 55.0% | |
| TTCCACCGGTGTTCCAGTTG+TGG | - | chr2.2:16008631-16008650 | None:intergenic | 55.0% | |
| ! | CTTTCTTGCGGTTTTGCCCC+TGG | + | chr2.2:16006912-16006931 | MS.gene71872:intron | 55.0% |
| !! | GTAGCAGTTTTGGCCCCTCA+AGG | + | chr2.2:16008106-16008125 | MS.gene71872:intron | 55.0% |
| !! | TGACTCGGTCTACGCTGATG+TGG | - | chr2.2:16008177-16008196 | None:intergenic | 55.0% |
| AGGCGTTTCATTGCCGGAGG+GGG | + | chr2.2:16007205-16007224 | MS.gene71872:intron | 60.0% | |
| CACCACAACTGGAACACCGG+TGG | + | chr2.2:16008626-16008645 | MS.gene71872:CDS | 60.0% | |
| CAGGCGTTTCATTGCCGGAG+GGG | + | chr2.2:16007204-16007223 | MS.gene71872:intron | 60.0% | |
| ! | TTGTGGTGGAGCTGGAGGGC+AGG | + | chr2.2:16005707-16005726 | MS.gene71872:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 16005694 | 16009082 | 16005694 | ID=MS.gene71872 |
| chr2.2 | mRNA | 16005694 | 16009082 | 16005694 | ID=MS.gene71872.t1;Parent=MS.gene71872 |
| chr2.2 | exon | 16005694 | 16005789 | 16005694 | ID=MS.gene71872.t1.exon1;Parent=MS.gene71872.t1 |
| chr2.2 | CDS | 16005694 | 16005789 | 16005694 | ID=cds.MS.gene71872.t1;Parent=MS.gene71872.t1 |
| chr2.2 | exon | 16007207 | 16007250 | 16007207 | ID=MS.gene71872.t1.exon2;Parent=MS.gene71872.t1 |
| chr2.2 | CDS | 16007207 | 16007250 | 16007207 | ID=cds.MS.gene71872.t1;Parent=MS.gene71872.t1 |
| chr2.2 | exon | 16008620 | 16008728 | 16008620 | ID=MS.gene71872.t1.exon3;Parent=MS.gene71872.t1 |
| chr2.2 | CDS | 16008620 | 16008728 | 16008620 | ID=cds.MS.gene71872.t1;Parent=MS.gene71872.t1 |
| chr2.2 | exon | 16008823 | 16008878 | 16008823 | ID=MS.gene71872.t1.exon4;Parent=MS.gene71872.t1 |
| chr2.2 | CDS | 16008823 | 16008878 | 16008823 | ID=cds.MS.gene71872.t1;Parent=MS.gene71872.t1 |
| chr2.2 | exon | 16008998 | 16009082 | 16008998 | ID=MS.gene71872.t1.exon5;Parent=MS.gene71872.t1 |
| chr2.2 | CDS | 16008998 | 16009082 | 16008998 | ID=cds.MS.gene71872.t1;Parent=MS.gene71872.t1 |
| Gene Sequence |
| Protein sequence |
