Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060686.t1 | XP_013464647.1 | 96.9 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 2.40E-67 | 264.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060686.t1 | Q9FN32 | 77.5 | 129 | 29 | 0 | 1 | 129 | 1 | 129 | 3.6e-56 | 218.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060686.t1 | A0A072VA37 | 96.9 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 1.7e-67 | 264.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060686 | MS.gene71872 | 0.996255 | 2.98E-225 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060686 | MS.gene057330 | PPI |
| MS.gene013560 | MS.gene060686 | PPI |
| MS.gene060686 | MS.gene057133 | PPI |
| MS.gene060686 | MS.gene06671 | PPI |
| MS.gene060686 | MS.gene06889 | PPI |
| MS.gene060686 | MS.gene69238 | PPI |
| MS.gene060686 | MS.gene06887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060686.t1 | MTR_2g078670 | 96.899 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 1.93e-92 | 263 |
| MS.gene060686.t1 | MTR_8g058785 | 72.656 | 128 | 35 | 0 | 1 | 128 | 1 | 128 | 2.17e-64 | 192 |
| MS.gene060686.t1 | MTR_8g061270 | 72.656 | 128 | 35 | 0 | 1 | 128 | 1 | 128 | 2.17e-64 | 192 |
| MS.gene060686.t1 | MTR_4g088505 | 65.891 | 129 | 42 | 1 | 1 | 129 | 1 | 127 | 4.99e-60 | 181 |
| MS.gene060686.t1 | MTR_3g070330 | 57.812 | 128 | 54 | 0 | 1 | 128 | 24 | 151 | 4.57e-51 | 159 |
| MS.gene060686.t1 | MTR_7g068250 | 56.589 | 129 | 47 | 1 | 1 | 129 | 1 | 120 | 2.85e-49 | 153 |
| MS.gene060686.t1 | MTR_3g070330 | 66.667 | 102 | 34 | 0 | 1 | 102 | 24 | 125 | 1.33e-48 | 152 |
| MS.gene060686.t1 | MTR_5g082490 | 56.589 | 129 | 56 | 0 | 1 | 129 | 1 | 129 | 2.76e-47 | 149 |
| MS.gene060686.t1 | MTR_4g088505 | 70.588 | 85 | 25 | 0 | 1 | 85 | 1 | 85 | 5.76e-42 | 135 |
| MS.gene060686.t1 | MTR_3g091840 | 56.842 | 95 | 41 | 0 | 12 | 106 | 8 | 102 | 3.42e-35 | 117 |
| MS.gene060686.t1 | MTR_8g027255 | 49.474 | 95 | 48 | 0 | 12 | 106 | 8 | 102 | 5.01e-29 | 102 |
| MS.gene060686.t1 | MTR_1g077750 | 50.000 | 84 | 42 | 0 | 12 | 95 | 8 | 91 | 2.79e-28 | 100 |
| MS.gene060686.t1 | MTR_1g077760 | 46.296 | 54 | 29 | 0 | 48 | 101 | 1 | 54 | 7.21e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060686.t1 | AT5G53940 | 77.519 | 129 | 29 | 0 | 1 | 129 | 1 | 129 | 1.90e-74 | 217 |
| MS.gene060686.t1 | AT2G40110 | 56.061 | 132 | 53 | 2 | 1 | 129 | 1 | 130 | 8.86e-51 | 157 |
| MS.gene060686.t1 | AT2G40110 | 65.686 | 102 | 35 | 0 | 1 | 102 | 1 | 102 | 1.54e-48 | 151 |
| MS.gene060686.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 6.13e-48 | 150 |
| MS.gene060686.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 6.13e-48 | 150 |
| MS.gene060686.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 6.13e-48 | 150 |
| MS.gene060686.t1 | AT3G11230 | 60.952 | 105 | 41 | 0 | 1 | 105 | 1 | 105 | 7.76e-45 | 142 |
| MS.gene060686.t1 | AT3G55890 | 53.488 | 129 | 52 | 1 | 1 | 129 | 1 | 121 | 1.09e-44 | 142 |
| MS.gene060686.t1 | AT3G55890 | 53.488 | 129 | 52 | 1 | 1 | 129 | 1 | 121 | 1.09e-44 | 142 |
| MS.gene060686.t1 | AT3G11230 | 60.952 | 105 | 41 | 0 | 1 | 105 | 34 | 138 | 1.58e-44 | 143 |
| MS.gene060686.t1 | AT3G11230 | 62.745 | 102 | 38 | 0 | 1 | 102 | 1 | 102 | 2.12e-44 | 140 |
| MS.gene060686.t1 | AT3G11230 | 62.745 | 102 | 38 | 0 | 1 | 102 | 34 | 135 | 3.71e-44 | 141 |
| MS.gene060686.t1 | AT3G55890 | 60.396 | 101 | 40 | 0 | 1 | 101 | 1 | 101 | 3.69e-43 | 137 |
| MS.gene060686.t1 | AT3G55890 | 60.396 | 101 | 40 | 0 | 1 | 101 | 1 | 101 | 3.69e-43 | 137 |
| MS.gene060686.t1 | AT2G40110 | 61.176 | 85 | 33 | 0 | 1 | 85 | 1 | 85 | 2.34e-36 | 120 |
| MS.gene060686.t1 | AT2G40110 | 61.176 | 85 | 33 | 0 | 1 | 85 | 1 | 85 | 2.34e-36 | 120 |
| MS.gene060686.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 8.62e-34 | 114 |
| MS.gene060686.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 8.62e-34 | 114 |
| MS.gene060686.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 8.62e-34 | 114 |
| MS.gene060686.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 8.62e-34 | 114 |
| MS.gene060686.t1 | AT4G27740 | 40.860 | 93 | 55 | 0 | 13 | 105 | 9 | 101 | 3.12e-23 | 87.4 |
Find 34 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAAGGATGATGCTTTC+AGG | 0.218365 | 2.1:+21941691 | MS.gene060686:CDS |
| TCTTTCAGGCGTTTCATTGC+CGG | 0.300182 | 2.1:+21940245 | MS.gene060686:intron |
| CAAATTCTGCAGAACTCATT+TGG | 0.346439 | 2.1:+21938787 | MS.gene060686:CDS |
| TGAGAAGAGTCAGAAGTATA+AGG | 0.380438 | 2.1:+21941880 | MS.gene060686:CDS |
| TCTGCAGAATTTGCATCTAT+AGG | 0.389978 | 2.1:-21938777 | None:intergenic |
| GTACTCACGCTTTACTGAAT+AGG | 0.399679 | 2.1:-21940282 | None:intergenic |
| TCCAGCGTGAACACCACAAC+TGG | 0.413680 | 2.1:+21941661 | MS.gene060686:intron |
| TGTTGCTGTGGTCAAATAGT+TGG | 0.420731 | 2.1:+21941742 | MS.gene060686:CDS |
| TTGTAGATGATCTCATTTCT+CGG | 0.425950 | 2.1:+21938813 | MS.gene060686:CDS |
| AAGAATCTTTGTGGTGGAGC+TGG | 0.437208 | 2.1:+21938745 | MS.gene060686:CDS |
| TTGTGGTGGAGCTGGAGGGC+AGG | 0.462348 | 2.1:+21938753 | MS.gene060686:CDS |
| AAGGGAAGTTTGTTCTTGAA+AGG | 0.474035 | 2.1:+21941903 | MS.gene060686:CDS |
| TTCCACCGGTGTTCCAGTTG+TGG | 0.476609 | 2.1:-21941674 | None:intergenic |
| AGGCGTTTCATTGCCGGAGG+GGG | 0.483191 | 2.1:+21940251 | MS.gene060686:intron |
| TGTAGATGATCTCATTTCTC+GGG | 0.483711 | 2.1:+21938814 | MS.gene060686:CDS |
| AAGAGTCAGAAGTATAAGGA+AGG | 0.484139 | 2.1:+21941884 | MS.gene060686:CDS |
| GAAAATGGGAAGAATCTTTG+TGG | 0.515998 | 2.1:+21938736 | None:intergenic |
| GAACACCACAACTGGAACAC+CGG | 0.528250 | 2.1:+21941669 | MS.gene060686:CDS |
| AATCTTTGTGGTGGAGCTGG+AGG | 0.548296 | 2.1:+21938748 | MS.gene060686:CDS |
| CAACTGGAACACCGGTGGAA+AGG | 0.551344 | 2.1:+21941677 | MS.gene060686:CDS |
| TTCAGGCGTTTCATTGCCGG+AGG | 0.558342 | 2.1:+21940248 | MS.gene060686:intron |
| AGAGTCAGAAGTATAAGGAA+GGG | 0.561728 | 2.1:+21941885 | MS.gene060686:CDS |
| ATCTTTGTGGTGGAGCTGGA+GGG | 0.585005 | 2.1:+21938749 | MS.gene060686:CDS |
| CACCACAACTGGAACACCGG+TGG | 0.593979 | 2.1:+21941672 | MS.gene060686:CDS |
| GAAAGCATCATCCTTTCCAC+CGG | 0.594762 | 2.1:-21941688 | None:intergenic |
| GAGAAATGAGATCATCTACA+AGG | 0.595304 | 2.1:-21938811 | None:intergenic |
| CAGGCGTTTCATTGCCGGAG+GGG | 0.602593 | 2.1:+21940250 | MS.gene060686:intron |
| TGACAATGTTGATTCCTCAA+CGG | 0.605876 | 2.1:+21942056 | MS.gene060686:CDS |
| GCTGTGGTCAAATAGTTGGC+TGG | 0.614432 | 2.1:+21941746 | MS.gene060686:CDS |
| AGTCATGTCAGCATGAGTGA+TGG | 0.619256 | 2.1:+21942093 | MS.gene060686:CDS |
| TCAGGCGTTTCATTGCCGGA+GGG | 0.624574 | 2.1:+21940249 | MS.gene060686:intron |
| AATGGGAAGAATCTTTGTGG+TGG | 0.654666 | 2.1:+21938739 | None:intergenic |
| AGAAATGAGATCATCTACAA+GGG | 0.674311 | 2.1:-21938810 | None:intergenic |
| GCTTTCAGGATTGCATACTG+TGG | 0.726768 | 2.1:+21941705 | MS.gene060686:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAAAAAATTCAATTTTT+AGG | + | chr2.1:21939732-21939751 | MS.gene060686:intron | 10.0% |
| !! | AGTAAATTCTTAATTATCAA+AGG | + | chr2.1:21938988-21939007 | MS.gene060686:intron | 15.0% |
| !! | CAACAAAAAAACAAAAAATA+TGG | - | chr2.1:21939112-21939131 | None:intergenic | 15.0% |
| !! | TACAAAATTGTTTAATTCTT+AGG | + | chr2.1:21940758-21940777 | MS.gene060686:intron | 15.0% |
| !!! | AAATATTGACCTTTTTTATT+TGG | + | chr2.1:21941034-21941053 | MS.gene060686:intron | 15.0% |
| !!! | AATAAAAAAGGTCAATATTT+TGG | - | chr2.1:21941034-21941053 | None:intergenic | 15.0% |
| !!! | GATAACAATTTTAAAACAAA+GGG | - | chr2.1:21940891-21940910 | None:intergenic | 15.0% |
| !!! | GTGAATTTTTTCTTATTATA+AGG | + | chr2.1:21939826-21939845 | MS.gene060686:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+TGG | + | chr2.1:21939432-21939451 | MS.gene060686:intron | 15.0% |
| !!! | TTTTAGTTAATCTTTTTCTT+TGG | + | chr2.1:21940957-21940976 | MS.gene060686:intron | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | + | chr2.1:21941294-21941313 | MS.gene060686:intron | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | - | chr2.1:21941313-21941294 | None:intergenic | 15.0% |
| !! | AAAATAAAAAAATTGACACG+TGG | + | chr2.1:21941181-21941200 | MS.gene060686:intron | 20.0% |
| !! | ACATGAAGTAAAAGAAAATT+AGG | + | chr2.1:21941538-21941557 | MS.gene060686:intron | 20.0% |
| !! | AGTGATAGTTTAAAAAGTAA+AGG | - | chr2.1:21938847-21938866 | None:intergenic | 20.0% |
| !! | CATGAAGTAAAAGAAAATTA+GGG | + | chr2.1:21941539-21941558 | MS.gene060686:intron | 20.0% |
| !! | GAAAAAGATTAACTAAAACA+TGG | - | chr2.1:21940955-21940974 | None:intergenic | 20.0% |
| !! | GTGATAGTTTAAAAAGTAAA+GGG | - | chr2.1:21938846-21938865 | None:intergenic | 20.0% |
| !! | TTGATAGAAGAGAAATAAAA+AGG | - | chr2.1:21941370-21941389 | None:intergenic | 20.0% |
| !!! | ATCAGTATTTTGATCTAATT+GGG | - | chr2.1:21939468-21939487 | None:intergenic | 20.0% |
| !!! | CGATAACAATTTTAAAACAA+AGG | - | chr2.1:21940892-21940911 | None:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | + | chr2.1:21941293-21941312 | MS.gene060686:intron | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | - | chr2.1:21941312-21941293 | None:intergenic | 20.0% |
| !!! | TTCATTTCTTTTCAATACTA+GGG | + | chr2.1:21939070-21939089 | MS.gene060686:intron | 20.0% |
| !!! | TTTATTTTTTTTTGCCTTGA+GGG | - | chr2.1:21941169-21941188 | None:intergenic | 20.0% |
| !!! | TTTCATTTCTTTTCAATACT+AGG | + | chr2.1:21939069-21939088 | MS.gene060686:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | + | chr2.1:21941295-21941314 | MS.gene060686:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | - | chr2.1:21941314-21941295 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTTTTGCCTTG+AGG | - | chr2.1:21941170-21941189 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTATTATAAGGAC+CGG | + | chr2.1:21939831-21939850 | MS.gene060686:intron | 20.0% |
| ! | AAATTTAGATGGAGTGAAAA+AGG | - | chr2.1:21941786-21941805 | None:intergenic | 25.0% |
| ! | AATATGGTGAATATACTAGA+AGG | - | chr2.1:21939096-21939115 | None:intergenic | 25.0% |
| ! | ACAGTTACATGAAATTTAGA+TGG | - | chr2.1:21941797-21941816 | None:intergenic | 25.0% |
| ! | AGCTAAATTATTACTTCCAA+AGG | + | chr2.1:21940116-21940135 | MS.gene060686:intron | 25.0% |
| ! | CAATTAGATCAAAATACTGA+TGG | + | chr2.1:21939467-21939486 | MS.gene060686:intron | 25.0% |
| ! | CATTGAATAACTAGTGTATT+TGG | - | chr2.1:21939796-21939815 | None:intergenic | 25.0% |
| ! | CTAGACTAAAACAAAACAAA+AGG | - | chr2.1:21939540-21939559 | None:intergenic | 25.0% |
| ! | GCAATTAAGCCAAATAAAAA+AGG | - | chr2.1:21941046-21941065 | None:intergenic | 25.0% |
| ! | GTCAATAACATAGAAACATT+AGG | - | chr2.1:21940565-21940584 | None:intergenic | 25.0% |
| ! | GTTATTATTCTATGTGCTTA+AGG | + | chr2.1:21939356-21939375 | MS.gene060686:intron | 25.0% |
| ! | TAGTGAGCAAATAAAGTTAT+TGG | - | chr2.1:21940823-21940842 | None:intergenic | 25.0% |
| ! | TGCAAATAATCCAGAAAATA+TGG | + | chr2.1:21940459-21940478 | MS.gene060686:intron | 25.0% |
| ! | TGGCTATCAAAATTCTTAAT+GGG | + | chr2.1:21939573-21939592 | MS.gene060686:intron | 25.0% |
| ! | TTCTTGTAATAGAAACGATA+GGG | - | chr2.1:21939716-21939735 | None:intergenic | 25.0% |
| ! | TTGGCTATCAAAATTCTTAA+TGG | + | chr2.1:21939572-21939591 | MS.gene060686:intron | 25.0% |
| ! | TTTAGTAAATGATGTACCTA+GGG | + | chr2.1:21940789-21940808 | MS.gene060686:intron | 25.0% |
| ! | TTTCTTGTAATAGAAACGAT+AGG | - | chr2.1:21939717-21939736 | None:intergenic | 25.0% |
| !! | TCAATATAAGTGCCTATTTT+TGG | + | chr2.1:21941386-21941405 | MS.gene060686:intron | 25.0% |
| !!! | ACATTCAAGATAGTTTTGTT+TGG | + | chr2.1:21940350-21940369 | MS.gene060686:intron | 25.0% |
| !!! | AGTATTGATTATGTTTCAGT+AGG | + | chr2.1:21939882-21939901 | MS.gene060686:intron | 25.0% |
| !!! | CATCAGTATTTTGATCTAAT+TGG | - | chr2.1:21939469-21939488 | None:intergenic | 25.0% |
| !!! | GTCTGTTTGTTTTTTTTTGT+CGG | + | chr2.1:21940079-21940098 | MS.gene060686:intron | 25.0% |
| !!! | GTTTTGTTTGGTAACATAAA+AGG | + | chr2.1:21940362-21940381 | MS.gene060686:intron | 25.0% |
| !!! | TCTGTTTGTTTTTTTTTGTC+GGG | + | chr2.1:21940080-21940099 | MS.gene060686:intron | 25.0% |
| !!! | TGTTTTGTTTTAGTCTAGTT+CGG | + | chr2.1:21939542-21939561 | MS.gene060686:intron | 25.0% |
| !!! | TTATTTTTTTTTGCCTTGAG+GGG | - | chr2.1:21941168-21941187 | None:intergenic | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | + | chr2.1:21941296-21941315 | MS.gene060686:intron | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | - | chr2.1:21941315-21941296 | None:intergenic | 25.0% |
| AAACCAAGAAAAATCAAGAC+TGG | - | chr2.1:21940147-21940166 | None:intergenic | 30.0% | |
| AACCAAGAAAAATCAAGACT+GGG | - | chr2.1:21940146-21940165 | None:intergenic | 30.0% | |
| AAGGGTGATCAAAGATTATA+AGG | - | chr2.1:21940226-21940245 | None:intergenic | 30.0% | |
| AATCTTCTCATGATAGGTTT+AGG | + | chr2.1:21939679-21939698 | MS.gene060686:intron | 30.0% | |
| AATGTAAAAGGGAATGCTTA+TGG | - | chr2.1:21939153-21939172 | None:intergenic | 30.0% | |
| AATTCTTCACTACTTTCTTG+CGG | + | chr2.1:21939946-21939965 | MS.gene060686:intron | 30.0% | |
| AGAAATGAGATCATCTACAA+GGG | - | chr2.1:21938813-21938832 | None:intergenic | 30.0% | |
| ATAATTTACTATTCCCTCTC+AGG | + | chr2.1:21941847-21941866 | MS.gene060686:intron | 30.0% | |
| ATATGCAAGATATGCACAAT+AGG | - | chr2.1:21942007-21942026 | None:intergenic | 30.0% | |
| ATATTATGTAGTCGCTATCT+TGG | + | chr2.1:21941941-21941960 | MS.gene060686:intron | 30.0% | |
| ATCGATAAAAAATTCCGTTG+AGG | - | chr2.1:21942073-21942092 | None:intergenic | 30.0% | |
| ATGTAAAAGGGAATGCTTAT+GGG | - | chr2.1:21939152-21939171 | None:intergenic | 30.0% | |
| ATTTGCTCACTATTCAAAAC+AGG | + | chr2.1:21940831-21940850 | MS.gene060686:intron | 30.0% | |
| CATGCGAAAATTCCAAAAAT+AGG | - | chr2.1:21941401-21941420 | None:intergenic | 30.0% | |
| CTTTAGTAAATGATGTACCT+AGG | + | chr2.1:21940788-21940807 | MS.gene060686:intron | 30.0% | |
| GAATGTAACCACATATTGTT+GGG | - | chr2.1:21939399-21939418 | None:intergenic | 30.0% | |
| GAGTACATTTCAGTTCTTAT+TGG | + | chr2.1:21940299-21940318 | MS.gene060686:intron | 30.0% | |
| GTGAACAAGATATGTTACAT+AGG | - | chr2.1:21941520-21941539 | None:intergenic | 30.0% | |
| TAGATCAAAATACTGATGGT+TGG | + | chr2.1:21939471-21939490 | MS.gene060686:intron | 30.0% | |
| TATGGGAAGACAATAACTAA+AGG | - | chr2.1:21939135-21939154 | None:intergenic | 30.0% | |
| TATGTTGATACATACAACAG+AGG | + | chr2.1:21942024-21942043 | MS.gene060686:intron | 30.0% | |
| TATGTTGTATAGCACTCTAA+GGG | + | chr2.1:21939650-21939669 | MS.gene060686:intron | 30.0% | |
| TGAATATTCTATACTCTCTC+TGG | + | chr2.1:21941614-21941633 | MS.gene060686:intron | 30.0% | |
| TGAATGTAACCACATATTGT+TGG | - | chr2.1:21939400-21939419 | None:intergenic | 30.0% | |
| TGCTACATTTGCAAAACTTA+GGG | - | chr2.1:21941138-21941157 | None:intergenic | 30.0% | |
| TGTTGGACAATTTATAAGTG+AGG | + | chr2.1:21939254-21939273 | MS.gene060686:intron | 30.0% | |
| TTATGTTGTATAGCACTCTA+AGG | + | chr2.1:21939649-21939668 | MS.gene060686:intron | 30.0% | |
| TTGTAGATGATCTCATTTCT+CGG | + | chr2.1:21938813-21938832 | MS.gene060686:CDS | 30.0% | |
| ! | AACATGACTACCATATTTTC+TGG | - | chr2.1:21940472-21940491 | None:intergenic | 30.0% |
| ! | AGAGAGAGTATAGAATATTC+AGG | - | chr2.1:21941615-21941634 | None:intergenic | 30.0% |
| ! | AGTCTAGTTCGGATATAAAT+TGG | + | chr2.1:21939553-21939572 | MS.gene060686:intron | 30.0% |
| ! | GTAACATAAAAGGCTTTTTG+TGG | + | chr2.1:21940372-21940391 | MS.gene060686:intron | 30.0% |
| ! | TTTTGCAAATGTAGCAGTTT+TGG | + | chr2.1:21941142-21941161 | MS.gene060686:intron | 30.0% |
| !!! | TTGTTTTTTTTTGTCGGGAT+GGG | + | chr2.1:21940085-21940104 | MS.gene060686:intron | 30.0% |
| !!! | TTTGTTTTTTTTTGTCGGGA+TGG | + | chr2.1:21940084-21940103 | MS.gene060686:intron | 30.0% |
| !!! | TTTTTGGAATTTTCGCATGA+TGG | + | chr2.1:21941402-21941421 | MS.gene060686:intron | 30.0% |
| AGAAAAAGATGGATACACCA+GGG | - | chr2.1:21939978-21939997 | None:intergenic | 35.0% | |
| ATGATGGTAAAAACCTTTGG+AGG | + | chr2.1:21941418-21941437 | MS.gene060686:intron | 35.0% | |
| ATGTTGTATAGCACTCTAAG+GGG | + | chr2.1:21939651-21939670 | MS.gene060686:intron | 35.0% | |
| CAAATTCTGCAGAACTCATT+TGG | + | chr2.1:21938787-21938806 | MS.gene060686:CDS | 35.0% | |
| CAGCTCGTATGTTATTATTC+GGG | - | chr2.1:21940621-21940640 | None:intergenic | 35.0% | |
| CCAAATATACCAGTTACTCA+AGG | - | chr2.1:21939760-21939779 | None:intergenic | 35.0% | |
| CCAGCTCGTATGTTATTATT+CGG | - | chr2.1:21940622-21940641 | None:intergenic | 35.0% | |
| CCTTGAGTAACTGGTATATT+TGG | + | chr2.1:21939757-21939776 | MS.gene060686:intron | 35.0% | |
| CTACATTTGCAAAACTTAGG+GGG | - | chr2.1:21941136-21941155 | None:intergenic | 35.0% | |
| CTGCTACATTTGCAAAACTT+AGG | - | chr2.1:21941139-21941158 | None:intergenic | 35.0% | |
| GAGAAATGAGATCATCTACA+AGG | - | chr2.1:21938814-21938833 | None:intergenic | 35.0% | |
| GCTACATTTGCAAAACTTAG+GGG | - | chr2.1:21941137-21941156 | None:intergenic | 35.0% | |
| GGCATTAATCTTCTCATGAT+AGG | + | chr2.1:21939673-21939692 | MS.gene060686:intron | 35.0% | |
| GTCTAGAAGGAAAATAAAGC+TGG | + | chr2.1:21941450-21941469 | MS.gene060686:intron | 35.0% | |
| TAGATGCAATGCAACATTTG+AGG | - | chr2.1:21940726-21940745 | None:intergenic | 35.0% | |
| TCTGCAGAATTTGCATCTAT+AGG | - | chr2.1:21938780-21938799 | None:intergenic | 35.0% | |
| TGTAGATGATCTCATTTCTC+GGG | + | chr2.1:21938814-21938833 | MS.gene060686:CDS | 35.0% | |
| TGTCAAAACAATACTTCCTC+CGG | - | chr2.1:21939853-21939872 | None:intergenic | 35.0% | |
| TTGATACATACAACAGAGGA+AGG | + | chr2.1:21942028-21942047 | MS.gene060686:intron | 35.0% | |
| TTTCTTATTATAAGGACCGG+AGG | + | chr2.1:21939834-21939853 | MS.gene060686:intron | 35.0% | |
| TTTGGCGATCATATAATAGC+TGG | - | chr2.1:21941016-21941035 | None:intergenic | 35.0% | |
| ! | AAGAGTCAGAAGTATAAGGA+AGG | + | chr2.1:21941884-21941903 | MS.gene060686:CDS | 35.0% |
| ! | AAGGGAAGTTTGTTCTTGAA+AGG | + | chr2.1:21941903-21941922 | MS.gene060686:CDS | 35.0% |
| ! | ACACCTTTTGGCAATGTAAA+AGG | - | chr2.1:21939165-21939184 | None:intergenic | 35.0% |
| ! | AGAGTCAGAAGTATAAGGAA+GGG | + | chr2.1:21941885-21941904 | MS.gene060686:CDS | 35.0% |
| ! | CACCTTTTGGCAATGTAAAA+GGG | - | chr2.1:21939164-21939183 | None:intergenic | 35.0% |
| ! | CTCTGGTATGCTTATGTTTT+GGG | + | chr2.1:21941631-21941650 | MS.gene060686:intron | 35.0% |
| ! | TCATGCTGAATGCATGTTTT+AGG | - | chr2.1:21940428-21940447 | None:intergenic | 35.0% |
| ! | TCTCTGGTATGCTTATGTTT+TGG | + | chr2.1:21941630-21941649 | MS.gene060686:intron | 35.0% |
| ! | TGAGAAGAGTCAGAAGTATA+AGG | + | chr2.1:21941880-21941899 | MS.gene060686:CDS | 35.0% |
| ! | TTCCCTTTTACATTGCCAAA+AGG | + | chr2.1:21939159-21939178 | MS.gene060686:intron | 35.0% |
| !! | CAGTCAATTTTAGTCACTGA+TGG | - | chr2.1:21940330-21940349 | None:intergenic | 35.0% |
| !! | CATTAGGCTAGTTTGTATTG+TGG | - | chr2.1:21940549-21940568 | None:intergenic | 35.0% |
| !! | TGACAATGTTGATTCCTCAA+CGG | + | chr2.1:21942056-21942075 | MS.gene060686:CDS | 35.0% |
| !!! | TTTTAGGTTCCTTGAGTAAC+TGG | + | chr2.1:21939748-21939767 | MS.gene060686:intron | 35.0% |
| AAACCACTACTACAGATCAC+AGG | - | chr2.1:21939052-21939071 | None:intergenic | 40.0% | |
| AACCACTACTACAGATCACA+GGG | - | chr2.1:21939051-21939070 | None:intergenic | 40.0% | |
| ACCGAGTCAAAATTGGCATT+GGG | + | chr2.1:21941234-21941253 | MS.gene060686:intron | 40.0% | |
| AGTAGACAGTGGTTATGCAT+AGG | + | chr2.1:21939602-21939621 | MS.gene060686:intron | 40.0% | |
| ATTGGATGTGATGTGAGTGT+TGG | + | chr2.1:21939237-21939256 | MS.gene060686:intron | 40.0% | |
| CAATAATCCAGCAGAGAAGT+TGG | - | chr2.1:21940197-21940216 | None:intergenic | 40.0% | |
| CAATGAAACGCCTGAAAGAA+GGG | - | chr2.1:21940244-21940263 | None:intergenic | 40.0% | |
| CAGAAAAAGATGGATACACC+AGG | - | chr2.1:21939979-21939998 | None:intergenic | 40.0% | |
| CCGAATAATAACATACGAGC+TGG | + | chr2.1:21940619-21940638 | MS.gene060686:intron | 40.0% | |
| CGCATGATGGTAAAAACCTT+TGG | + | chr2.1:21941415-21941434 | MS.gene060686:intron | 40.0% | |
| GAAAAAGATGGATACACCAG+GGG | - | chr2.1:21939977-21939996 | None:intergenic | 40.0% | |
| GTACTCACGCTTTACTGAAT+AGG | - | chr2.1:21940285-21940304 | None:intergenic | 40.0% | |
| TCTTTGATCACCCTTCTTTC+AGG | + | chr2.1:21940231-21940250 | MS.gene060686:intron | 40.0% | |
| TGATGTGACCCAACAATATG+TGG | + | chr2.1:21939388-21939407 | MS.gene060686:intron | 40.0% | |
| TGCCACAGTTGCAAAACATA+GGG | + | chr2.1:21941266-21941285 | MS.gene060686:intron | 40.0% | |
| TGTTGCTGTGGTCAAATAGT+TGG | + | chr2.1:21941742-21941761 | MS.gene060686:CDS | 40.0% | |
| ! | ATCGCAACTTTGGGAAAGTT+AGG | + | chr2.1:21941324-21941343 | MS.gene060686:intron | 40.0% |
| ! | ATCGCAACTTTGGGAAAGTT+AGG | - | chr2.1:21941343-21941324 | None:intergenic | 40.0% |
| ! | CAAAATACTGATGGTTGGCT+TGG | + | chr2.1:21939476-21939495 | MS.gene060686:intron | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | + | chr2.1:21941082-21941101 | MS.gene060686:intron | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | - | chr2.1:21941101-21941082 | None:intergenic | 40.0% |
| ! | GGTGTATCCATCTTTTTCTG+TGG | + | chr2.1:21939979-21939998 | MS.gene060686:intron | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+GGG | + | chr2.1:21941325-21941344 | MS.gene060686:intron | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+GGG | - | chr2.1:21941344-21941325 | None:intergenic | 40.0% |
| ! | TGCCCAGTCTTGATTTTTCT+TGG | + | chr2.1:21940141-21940160 | MS.gene060686:intron | 40.0% |
| ! | TGGTAAAAACCTTTGGAGGA+AGG | + | chr2.1:21941422-21941441 | MS.gene060686:intron | 40.0% |
| ! | TGTTGTATAGCACTCTAAGG+GGG | + | chr2.1:21939652-21939671 | MS.gene060686:intron | 40.0% |
| ! | TTTTGCAACTGTGGCAGTTT+TGG | - | chr2.1:21941262-21941281 | None:intergenic | 40.0% |
| !!! | GATATCTTTTGCTGTTGCTG+TGG | + | chr2.1:21941730-21941749 | MS.gene060686:CDS | 40.0% |
| AGACATGTTCCTTCCTCCAA+AGG | - | chr2.1:21941434-21941453 | None:intergenic | 45.0% | |
| AGCGTAGACCGAGTCAAAAT+TGG | + | chr2.1:21941227-21941246 | MS.gene060686:intron | 45.0% | |
| AGTCATGTCAGCATGAGTGA+TGG | + | chr2.1:21942093-21942112 | MS.gene060686:CDS | 45.0% | |
| ATGGGACACTAAGTAGACAG+TGG | + | chr2.1:21939591-21939610 | MS.gene060686:intron | 45.0% | |
| CAAGTTTCCAACTTCTCTGC+TGG | + | chr2.1:21940187-21940206 | MS.gene060686:intron | 45.0% | |
| CATAGTGCAGTGTTACACTG+TGG | + | chr2.1:21940679-21940698 | MS.gene060686:intron | 45.0% | |
| CATTTGCAAAACTTAGGGGG+CGG | - | chr2.1:21941133-21941152 | None:intergenic | 45.0% | |
| CCACAGTTGCAAAACATAGG+GGG | + | chr2.1:21941268-21941287 | MS.gene060686:intron | 45.0% | |
| CCGAGTCAAAATTGGCATTG+GGG | + | chr2.1:21941235-21941254 | MS.gene060686:intron | 45.0% | |
| CGAGTAAAGGAGTCTCACAT+TGG | + | chr2.1:21939219-21939238 | MS.gene060686:intron | 45.0% | |
| CTGCCACAGTTGCAAAACAT+AGG | + | chr2.1:21941265-21941284 | MS.gene060686:intron | 45.0% | |
| GACACTGCCACAGAAAAAGA+TGG | - | chr2.1:21939989-21940008 | None:intergenic | 45.0% | |
| GACCGAGTCAAAATTGGCAT+TGG | + | chr2.1:21941233-21941252 | MS.gene060686:intron | 45.0% | |
| GAGGAAGGAACATGTCTAGA+AGG | + | chr2.1:21941437-21941456 | MS.gene060686:intron | 45.0% | |
| GCAATGAAACGCCTGAAAGA+AGG | - | chr2.1:21940245-21940264 | None:intergenic | 45.0% | |
| GCCACAGTTGCAAAACATAG+GGG | + | chr2.1:21941267-21941286 | MS.gene060686:intron | 45.0% | |
| GCTGCAAGAGTCATTGACAA+TGG | + | chr2.1:21939498-21939517 | MS.gene060686:intron | 45.0% | |
| GCTTTCAGGATTGCATACTG+TGG | + | chr2.1:21941705-21941724 | MS.gene060686:CDS | 45.0% | |
| GGTTGTGCTACATCTAGTCA+TGG | + | chr2.1:21940700-21940719 | MS.gene060686:intron | 45.0% | |
| GTGGAAAGGATGATGCTTTC+AGG | + | chr2.1:21941691-21941710 | MS.gene060686:CDS | 45.0% | |
| GTTCGATGTCTGACATGTGT+TGG | + | chr2.1:21939185-21939204 | MS.gene060686:intron | 45.0% | |
| TCATGTGCAGATTCCTGAGA+GGG | - | chr2.1:21941863-21941882 | None:intergenic | 45.0% | |
| TCTTTCAGGCGTTTCATTGC+CGG | + | chr2.1:21940245-21940264 | MS.gene060686:intron | 45.0% | |
| ! | AAGAATCTTTGTGGTGGAGC+TGG | + | chr2.1:21938745-21938764 | MS.gene060686:CDS | 45.0% |
| ! | CAGACATCGAACACACCTTT+TGG | - | chr2.1:21939177-21939196 | None:intergenic | 45.0% |
| ! | CGAGTCAAAATTGGCATTGG+GGG | + | chr2.1:21941236-21941255 | MS.gene060686:intron | 45.0% |
| ! | CGCAACTTTGGGAAAGTTAG+GGG | + | chr2.1:21941326-21941345 | MS.gene060686:intron | 45.0% |
| ! | CGCAACTTTGGGAAAGTTAG+GGG | - | chr2.1:21941345-21941326 | None:intergenic | 45.0% |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | + | chr2.1:21941327-21941346 | MS.gene060686:intron | 45.0% |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | - | chr2.1:21941346-21941327 | None:intergenic | 45.0% |
| !! | GAAAGCATCATCCTTTCCAC+CGG | - | chr2.1:21941691-21941710 | None:intergenic | 45.0% |
| !! | GTTATTGGCTTCACTTCCCT+AGG | - | chr2.1:21940808-21940827 | None:intergenic | 45.0% |
| !!! | CCCCAATGCCAATTTTGACT+CGG | - | chr2.1:21941238-21941257 | None:intergenic | 45.0% |
| ATCAAGACTGGGCATGCCTT+TGG | - | chr2.1:21940135-21940154 | None:intergenic | 50.0% | |
| CACCCTGTGATCTGTAGTAG+TGG | + | chr2.1:21939046-21939065 | MS.gene060686:intron | 50.0% | |
| CACTACTACAGATCACAGGG+TGG | - | chr2.1:21939048-21939067 | None:intergenic | 50.0% | |
| CAGTTGCAAAACATAGGGGG+CGG | + | chr2.1:21941271-21941290 | MS.gene060686:intron | 50.0% | |
| CTCATGTGCAGATTCCTGAG+AGG | - | chr2.1:21941864-21941883 | None:intergenic | 50.0% | |
| CTGATGTGGAACCCTAAGTG+AGG | - | chr2.1:21941209-21941228 | None:intergenic | 50.0% | |
| GAACACCACAACTGGAACAC+CGG | + | chr2.1:21941669-21941688 | MS.gene060686:CDS | 50.0% | |
| GCTGTGGTCAAATAGTTGGC+TGG | + | chr2.1:21941746-21941765 | MS.gene060686:CDS | 50.0% | |
| GGGGCCAAAATCGCAACTTT+GGG | + | chr2.1:21941315-21941334 | MS.gene060686:intron | 50.0% | |
| GGGGCCAAAATCGCAACTTT+GGG | - | chr2.1:21941334-21941315 | None:intergenic | 50.0% | |
| GGTTTGTCACGTGCGAGTAA+AGG | + | chr2.1:21939206-21939225 | MS.gene060686:intron | 50.0% | |
| ! | AATCTTTGTGGTGGAGCTGG+AGG | + | chr2.1:21938748-21938767 | MS.gene060686:CDS | 50.0% |
| ! | ATCTTTGTGGTGGAGCTGGA+GGG | + | chr2.1:21938749-21938768 | MS.gene060686:CDS | 50.0% |
| ! | CCCCCTATGTTTTGCAACTG+TGG | - | chr2.1:21941271-21941290 | None:intergenic | 50.0% |
| ATAGGTATGCGTTCCCCCTC+CGG | - | chr2.1:21940267-21940286 | None:intergenic | 55.0% | |
| CAACTGGAACACCGGTGGAA+AGG | + | chr2.1:21941677-21941696 | MS.gene060686:CDS | 55.0% | |
| GACACGTGGCACCTCACTTA+GGG | + | chr2.1:21941195-21941214 | MS.gene060686:intron | 55.0% | |
| GGGGGCCAAAATCGCAACTT+TGG | + | chr2.1:21941314-21941333 | MS.gene060686:intron | 55.0% | |
| GGGGGCCAAAATCGCAACTT+TGG | - | chr2.1:21941333-21941314 | None:intergenic | 55.0% | |
| TCAGGCGTTTCATTGCCGGA+GGG | + | chr2.1:21940249-21940268 | MS.gene060686:intron | 55.0% | |
| TCCAGCGTGAACACCACAAC+TGG | + | chr2.1:21941661-21941680 | MS.gene060686:intron | 55.0% | |
| TCCAGTTGTGGTGTTCACGC+TGG | - | chr2.1:21941665-21941684 | None:intergenic | 55.0% | |
| TGACACGTGGCACCTCACTT+AGG | + | chr2.1:21941194-21941213 | MS.gene060686:intron | 55.0% | |
| TTCAGGCGTTTCATTGCCGG+AGG | + | chr2.1:21940248-21940267 | MS.gene060686:intron | 55.0% | |
| TTCCACCGGTGTTCCAGTTG+TGG | - | chr2.1:21941677-21941696 | None:intergenic | 55.0% | |
| ! | CTTTCTTGCGGTTTTGCCCC+TGG | + | chr2.1:21939958-21939977 | MS.gene060686:intron | 55.0% |
| !! | GTAGCAGTTTTGGCCCCTCA+AGG | + | chr2.1:21941152-21941171 | MS.gene060686:intron | 55.0% |
| !! | TGACTCGGTCTACGCTGATG+TGG | - | chr2.1:21941223-21941242 | None:intergenic | 55.0% |
| AGGCGTTTCATTGCCGGAGG+GGG | + | chr2.1:21940251-21940270 | MS.gene060686:intron | 60.0% | |
| CACCACAACTGGAACACCGG+TGG | + | chr2.1:21941672-21941691 | MS.gene060686:CDS | 60.0% | |
| CAGGCGTTTCATTGCCGGAG+GGG | + | chr2.1:21940250-21940269 | MS.gene060686:intron | 60.0% | |
| ! | TTGTGGTGGAGCTGGAGGGC+AGG | + | chr2.1:21938753-21938772 | MS.gene060686:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 21938740 | 21942128 | 21938740 | ID=MS.gene060686 |
| chr2.1 | mRNA | 21938740 | 21942128 | 21938740 | ID=MS.gene060686.t1;Parent=MS.gene060686 |
| chr2.1 | exon | 21938740 | 21938835 | 21938740 | ID=MS.gene060686.t1.exon1;Parent=MS.gene060686.t1 |
| chr2.1 | CDS | 21938740 | 21938835 | 21938740 | ID=cds.MS.gene060686.t1;Parent=MS.gene060686.t1 |
| chr2.1 | exon | 21940253 | 21940296 | 21940253 | ID=MS.gene060686.t1.exon2;Parent=MS.gene060686.t1 |
| chr2.1 | CDS | 21940253 | 21940296 | 21940253 | ID=cds.MS.gene060686.t1;Parent=MS.gene060686.t1 |
| chr2.1 | exon | 21941666 | 21941774 | 21941666 | ID=MS.gene060686.t1.exon3;Parent=MS.gene060686.t1 |
| chr2.1 | CDS | 21941666 | 21941774 | 21941666 | ID=cds.MS.gene060686.t1;Parent=MS.gene060686.t1 |
| chr2.1 | exon | 21941869 | 21941924 | 21941869 | ID=MS.gene060686.t1.exon4;Parent=MS.gene060686.t1 |
| chr2.1 | CDS | 21941869 | 21941924 | 21941869 | ID=cds.MS.gene060686.t1;Parent=MS.gene060686.t1 |
| chr2.1 | exon | 21942044 | 21942128 | 21942044 | ID=MS.gene060686.t1.exon5;Parent=MS.gene060686.t1 |
| chr2.1 | CDS | 21942044 | 21942128 | 21942044 | ID=cds.MS.gene060686.t1;Parent=MS.gene060686.t1 |
| Gene Sequence |
| Protein sequence |
