Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58367.t1 | XP_013464647.1 | 96.1 | 129 | 5 | 0 | 1 | 129 | 1 | 129 | 5.30E-67 | 263.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58367.t1 | Q9FN32 | 77.5 | 129 | 29 | 0 | 1 | 129 | 1 | 129 | 3.6e-56 | 218.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58367.t1 | A0A072VA37 | 96.1 | 129 | 5 | 0 | 1 | 129 | 1 | 129 | 3.8e-67 | 263.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06887 | MS.gene58367 | PPI |
| MS.gene013560 | MS.gene58367 | PPI |
| MS.gene58367 | MS.gene06889 | PPI |
| MS.gene69238 | MS.gene58367 | PPI |
| MS.gene06671 | MS.gene58367 | PPI |
| MS.gene58367 | MS.gene057133 | PPI |
| MS.gene057330 | MS.gene58367 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58367.t1 | MTR_2g078670 | 96.124 | 129 | 5 | 0 | 1 | 129 | 1 | 129 | 5.35e-92 | 261 |
| MS.gene58367.t1 | MTR_8g058785 | 71.875 | 128 | 36 | 0 | 1 | 128 | 1 | 128 | 7.09e-64 | 191 |
| MS.gene58367.t1 | MTR_8g061270 | 71.875 | 128 | 36 | 0 | 1 | 128 | 1 | 128 | 7.09e-64 | 191 |
| MS.gene58367.t1 | MTR_4g088505 | 65.116 | 129 | 43 | 1 | 1 | 129 | 1 | 127 | 1.41e-59 | 180 |
| MS.gene58367.t1 | MTR_3g070330 | 57.812 | 128 | 54 | 0 | 1 | 128 | 24 | 151 | 3.52e-51 | 159 |
| MS.gene58367.t1 | MTR_7g068250 | 56.589 | 129 | 47 | 1 | 1 | 129 | 1 | 120 | 2.47e-49 | 154 |
| MS.gene58367.t1 | MTR_3g070330 | 66.667 | 102 | 34 | 0 | 1 | 102 | 24 | 125 | 1.07e-48 | 152 |
| MS.gene58367.t1 | MTR_5g082490 | 56.589 | 129 | 56 | 0 | 1 | 129 | 1 | 129 | 2.56e-47 | 149 |
| MS.gene58367.t1 | MTR_4g088505 | 69.412 | 85 | 26 | 0 | 1 | 85 | 1 | 85 | 1.76e-41 | 134 |
| MS.gene58367.t1 | MTR_3g091840 | 56.842 | 95 | 41 | 0 | 12 | 106 | 8 | 102 | 3.00e-35 | 117 |
| MS.gene58367.t1 | MTR_8g027255 | 49.474 | 95 | 48 | 0 | 12 | 106 | 8 | 102 | 4.69e-29 | 102 |
| MS.gene58367.t1 | MTR_1g077750 | 48.810 | 84 | 43 | 0 | 12 | 95 | 8 | 91 | 8.29e-28 | 99.0 |
| MS.gene58367.t1 | MTR_1g077760 | 46.296 | 54 | 29 | 0 | 48 | 101 | 1 | 54 | 5.76e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58367.t1 | AT5G53940 | 77.519 | 129 | 29 | 0 | 1 | 129 | 1 | 129 | 1.57e-74 | 218 |
| MS.gene58367.t1 | AT2G40110 | 56.061 | 132 | 53 | 2 | 1 | 129 | 1 | 130 | 6.81e-51 | 158 |
| MS.gene58367.t1 | AT2G40110 | 65.686 | 102 | 35 | 0 | 1 | 102 | 1 | 102 | 1.33e-48 | 151 |
| MS.gene58367.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 4.77e-48 | 150 |
| MS.gene58367.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 4.77e-48 | 150 |
| MS.gene58367.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 4.77e-48 | 150 |
| MS.gene58367.t1 | AT3G11230 | 60.952 | 105 | 41 | 0 | 1 | 105 | 1 | 105 | 6.52e-45 | 143 |
| MS.gene58367.t1 | AT3G55890 | 53.488 | 129 | 52 | 1 | 1 | 129 | 1 | 121 | 9.73e-45 | 142 |
| MS.gene58367.t1 | AT3G55890 | 53.488 | 129 | 52 | 1 | 1 | 129 | 1 | 121 | 9.73e-45 | 142 |
| MS.gene58367.t1 | AT3G11230 | 60.952 | 105 | 41 | 0 | 1 | 105 | 34 | 138 | 1.53e-44 | 143 |
| MS.gene58367.t1 | AT3G11230 | 62.745 | 102 | 38 | 0 | 1 | 102 | 1 | 102 | 2.05e-44 | 140 |
| MS.gene58367.t1 | AT3G11230 | 62.745 | 102 | 38 | 0 | 1 | 102 | 34 | 135 | 3.59e-44 | 141 |
| MS.gene58367.t1 | AT3G55890 | 60.396 | 101 | 40 | 0 | 1 | 101 | 1 | 101 | 3.46e-43 | 137 |
| MS.gene58367.t1 | AT3G55890 | 60.396 | 101 | 40 | 0 | 1 | 101 | 1 | 101 | 3.46e-43 | 137 |
| MS.gene58367.t1 | AT2G40110 | 61.176 | 85 | 33 | 0 | 1 | 85 | 1 | 85 | 1.80e-36 | 120 |
| MS.gene58367.t1 | AT2G40110 | 61.176 | 85 | 33 | 0 | 1 | 85 | 1 | 85 | 1.80e-36 | 120 |
| MS.gene58367.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 7.00e-34 | 114 |
| MS.gene58367.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 7.00e-34 | 114 |
| MS.gene58367.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 7.00e-34 | 114 |
| MS.gene58367.t1 | AT4G27745 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 7.00e-34 | 114 |
| MS.gene58367.t1 | AT4G27740 | 40.860 | 93 | 55 | 0 | 13 | 105 | 9 | 101 | 5.20e-23 | 86.7 |
Find 33 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAAAGGATGATGCTTTC+AGG | 0.217955 | 2.3:+19216532 | MS.gene58367:CDS |
| TCTTTCAGGCGTTTCATTGC+CGG | 0.300182 | 2.3:+19215408 | MS.gene58367:intron |
| CAAATTCTGCAGAACTCATT+TGG | 0.346439 | 2.3:+19213950 | MS.gene58367:CDS |
| TCTGCAGAATTTGCATCTAT+AGG | 0.389978 | 2.3:-19213940 | None:intergenic |
| TCCAGTGTGAACACCACAAC+TGG | 0.392266 | 2.3:+19216502 | MS.gene58367:intron |
| GTACTCACGCTTTACTGAAT+AGG | 0.399679 | 2.3:-19215445 | None:intergenic |
| TGTTGCTGTGGTCAAATAGT+TGG | 0.420731 | 2.3:+19216583 | MS.gene58367:CDS |
| TTGTAGATGATCTCATTTCT+CGG | 0.425950 | 2.3:+19213976 | MS.gene58367:CDS |
| AAGAATCTTTGTGGTGGAGC+TGG | 0.437208 | 2.3:+19213908 | MS.gene58367:CDS |
| TTGTGGTGGAGCTGGAGGGC+AGG | 0.462348 | 2.3:+19213916 | MS.gene58367:CDS |
| TTCCATCGGTGTTCCAGTTG+TGG | 0.467942 | 2.3:-19216515 | None:intergenic |
| AAGGGAAGTTTGTTCTTGAA+AGG | 0.474035 | 2.3:+19216890 | MS.gene58367:CDS |
| AGGCGTTTCATTGCCGGAGG+GGG | 0.483191 | 2.3:+19215414 | MS.gene58367:intron |
| TGTAGATGATCTCATTTCTC+GGG | 0.483711 | 2.3:+19213977 | MS.gene58367:CDS |
| GAAAATGGGAAGAATCTTTG+TGG | 0.515998 | 2.3:+19213899 | None:intergenic |
| AAGAGTCAGAAATACAAGGA+AGG | 0.546995 | 2.3:+19216871 | MS.gene58367:CDS |
| CACCACAACTGGAACACCGA+TGG | 0.547152 | 2.3:+19216513 | MS.gene58367:CDS |
| AATCTTTGTGGTGGAGCTGG+AGG | 0.548296 | 2.3:+19213911 | MS.gene58367:CDS |
| TTCAGGCGTTTCATTGCCGG+AGG | 0.558342 | 2.3:+19215411 | MS.gene58367:intron |
| CAACTGGAACACCGATGGAA+AGG | 0.571591 | 2.3:+19216518 | MS.gene58367:CDS |
| AGAGTCAGAAATACAAGGAA+GGG | 0.577637 | 2.3:+19216872 | MS.gene58367:CDS |
| ATCTTTGTGGTGGAGCTGGA+GGG | 0.585005 | 2.3:+19213912 | MS.gene58367:CDS |
| GAGAAATGAGATCATCTACA+AGG | 0.595304 | 2.3:-19213974 | None:intergenic |
| CAGGCGTTTCATTGCCGGAG+GGG | 0.602593 | 2.3:+19215413 | MS.gene58367:intron |
| TGACAATGTTGATTCCTCAA+CGG | 0.605876 | 2.3:+19217043 | MS.gene58367:CDS |
| GAAAGCATCATCCTTTCCAT+CGG | 0.609754 | 2.3:-19216529 | None:intergenic |
| TGAGAAGAGTCAGAAATACA+AGG | 0.613729 | 2.3:+19216867 | MS.gene58367:CDS |
| GCTGTGGTCAAATAGTTGGC+TGG | 0.614432 | 2.3:+19216587 | MS.gene58367:CDS |
| AGTCATGTCAGCATGAGTGA+TGG | 0.619256 | 2.3:+19217080 | MS.gene58367:CDS |
| TCAGGCGTTTCATTGCCGGA+GGG | 0.624574 | 2.3:+19215412 | MS.gene58367:intron |
| AATGGGAAGAATCTTTGTGG+TGG | 0.654666 | 2.3:+19213902 | None:intergenic |
| AGAAATGAGATCATCTACAA+GGG | 0.674311 | 2.3:-19213973 | None:intergenic |
| GCTTTCAGGATTGCATACTG+TGG | 0.726768 | 2.3:+19216546 | MS.gene58367:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAAAACAAAAAATA+TGG | - | chr2.3:19214275-19214294 | None:intergenic | 10.0% |
| !!! | AAGAAAAAAATTCAATTTTT+AGG | + | chr2.3:19214895-19214914 | MS.gene58367:intron | 10.0% |
| !! | AGTAAATTCTTAATTATCAA+AGG | + | chr2.3:19214151-19214170 | MS.gene58367:intron | 15.0% |
| !! | ATGAAGTAAAAAGAAAATTA+GGG | + | chr2.3:19216380-19216399 | MS.gene58367:intron | 15.0% |
| !! | TACAAAATTGTTTAATTCTT+AGG | + | chr2.3:19215921-19215940 | MS.gene58367:intron | 15.0% |
| !!! | AATAAAAAAGGTCAATATTT+TGG | - | chr2.3:19216197-19216216 | None:intergenic | 15.0% |
| !!! | GATAACAATTTTAAAACAAA+GGG | - | chr2.3:19216054-19216073 | None:intergenic | 15.0% |
| !!! | GTGAATTTTTTCTTATTATA+AGG | + | chr2.3:19214989-19215008 | MS.gene58367:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+TGG | + | chr2.3:19214596-19214615 | MS.gene58367:intron | 15.0% |
| !!! | TTTTAGTTAATCTTTTTCTT+TGG | + | chr2.3:19216120-19216139 | MS.gene58367:intron | 15.0% |
| !! | AGTGATAGTTTAAAAAGTAA+AGG | - | chr2.3:19214010-19214029 | None:intergenic | 20.0% |
| !! | CATGAAGTAAAAAGAAAATT+AGG | + | chr2.3:19216379-19216398 | MS.gene58367:intron | 20.0% |
| !! | GAAAAAGATTAACTAAAACA+TGG | - | chr2.3:19216118-19216137 | None:intergenic | 20.0% |
| !! | GTGATAGTTTAAAAAGTAAA+GGG | - | chr2.3:19214009-19214028 | None:intergenic | 20.0% |
| !! | TGATAGAAGAGAAATAAAAA+AGG | - | chr2.3:19216209-19216228 | None:intergenic | 20.0% |
| !!! | ATCAGTATTTTGATCTAATT+GGG | - | chr2.3:19214632-19214651 | None:intergenic | 20.0% |
| !!! | CGATAACAATTTTAAAACAA+AGG | - | chr2.3:19216055-19216074 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTATTATAAGGAC+CGG | + | chr2.3:19214994-19215013 | MS.gene58367:intron | 20.0% |
| ! | AAATTTAGATGGAGTGAAAA+AGG | - | chr2.3:19216627-19216646 | None:intergenic | 25.0% |
| ! | AATATGGTGAATATACTAGA+AGG | - | chr2.3:19214259-19214278 | None:intergenic | 25.0% |
| ! | CAATTAGATCAAAATACTGA+TGG | + | chr2.3:19214631-19214650 | MS.gene58367:intron | 25.0% |
| ! | CATTGAATAACTAGTGTATT+TGG | - | chr2.3:19214959-19214978 | None:intergenic | 25.0% |
| ! | CTAGACTAAAACAAAACAAA+AGG | - | chr2.3:19214704-19214723 | None:intergenic | 25.0% |
| ! | GCTAAATTTATTACTTCCAA+AGG | + | chr2.3:19215279-19215298 | MS.gene58367:intron | 25.0% |
| ! | GTCAATAACATAGAAACATT+AGG | - | chr2.3:19215728-19215747 | None:intergenic | 25.0% |
| ! | GTTATTATTCTATGTGCTTA+AGG | + | chr2.3:19214520-19214539 | MS.gene58367:intron | 25.0% |
| ! | TAGTGAGCAAATAAAGTTAT+TGG | - | chr2.3:19215986-19216005 | None:intergenic | 25.0% |
| ! | TCAGTTACATGAAATTTAGA+TGG | - | chr2.3:19216638-19216657 | None:intergenic | 25.0% |
| ! | TGCAAATAATCCAGAAAATA+TGG | + | chr2.3:19215622-19215641 | MS.gene58367:intron | 25.0% |
| ! | TGGCTATCAAAATTCTTAAT+GGG | + | chr2.3:19214737-19214756 | MS.gene58367:intron | 25.0% |
| ! | TTCTTGTAATAGAAACGATA+GGG | - | chr2.3:19214880-19214899 | None:intergenic | 25.0% |
| ! | TTGGCTATCAAAATTCTTAA+TGG | + | chr2.3:19214736-19214755 | MS.gene58367:intron | 25.0% |
| ! | TTTAGTAAATGATGTACCTA+GGG | + | chr2.3:19215952-19215971 | MS.gene58367:intron | 25.0% |
| ! | TTTCTTGTAATAGAAACGAT+AGG | - | chr2.3:19214881-19214900 | None:intergenic | 25.0% |
| !! | GATTGATAATTGTCGTTATT+TGG | + | chr2.3:19216414-19216433 | MS.gene58367:intron | 25.0% |
| !! | TCAATATAAGTGCCTATTTT+TGG | + | chr2.3:19216226-19216245 | MS.gene58367:intron | 25.0% |
| !!! | ACATTCAAGATAGTTTTGTT+TGG | + | chr2.3:19215513-19215532 | MS.gene58367:intron | 25.0% |
| !!! | AGTATTGATTATGTTTCAGT+AGG | + | chr2.3:19215045-19215064 | MS.gene58367:intron | 25.0% |
| !!! | CATCAGTATTTTGATCTAAT+TGG | - | chr2.3:19214633-19214652 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTGGTAACATAAA+AGG | + | chr2.3:19215525-19215544 | MS.gene58367:intron | 25.0% |
| !!! | TCTTACGATTTTAATCTTCA+AGG | + | chr2.3:19216763-19216782 | MS.gene58367:intron | 25.0% |
| !!! | TGTCTGTTTGTTTTTTTTGT+CGG | + | chr2.3:19215241-19215260 | MS.gene58367:intron | 25.0% |
| !!! | TGTTTTGTTTTAGTCTAGTT+CGG | + | chr2.3:19214706-19214725 | MS.gene58367:intron | 25.0% |
| AAGGGTGATCAAAGATTATA+AGG | - | chr2.3:19215389-19215408 | None:intergenic | 30.0% | |
| AATCTTCTCATGATAGGTTT+AGG | + | chr2.3:19214843-19214862 | MS.gene58367:intron | 30.0% | |
| AATGTAAAAGGGAATGCTTA+TGG | - | chr2.3:19214317-19214336 | None:intergenic | 30.0% | |
| AATTCTTCACTACTTTCTTG+CGG | + | chr2.3:19215109-19215128 | MS.gene58367:intron | 30.0% | |
| ACAATTTACTATTCCTTCTC+AGG | + | chr2.3:19216834-19216853 | MS.gene58367:intron | 30.0% | |
| ACGACAATTATCAATCATTG+TGG | - | chr2.3:19216410-19216429 | None:intergenic | 30.0% | |
| AGAAAAAGATGGATACAACA+GGG | - | chr2.3:19215141-19215160 | None:intergenic | 30.0% | |
| AGAAATGAGATCATCTACAA+GGG | - | chr2.3:19213976-19213995 | None:intergenic | 30.0% | |
| ATATGCAAGATATGCACAAT+AGG | - | chr2.3:19216994-19217013 | None:intergenic | 30.0% | |
| ATATTATGTAGTCGCTATCT+TGG | + | chr2.3:19216928-19216947 | MS.gene58367:intron | 30.0% | |
| ATCGATAAAAAATTCCGTTG+AGG | - | chr2.3:19217060-19217079 | None:intergenic | 30.0% | |
| ATGTAAAAGGGAATGCTTAT+GGG | - | chr2.3:19214316-19214335 | None:intergenic | 30.0% | |
| ATTTGCTCACTATTCAAAAC+AGG | + | chr2.3:19215994-19216013 | MS.gene58367:intron | 30.0% | |
| CATGCGAAAATTCCAAAAAT+AGG | - | chr2.3:19216241-19216260 | None:intergenic | 30.0% | |
| CTTTAGTAAATGATGTACCT+AGG | + | chr2.3:19215951-19215970 | MS.gene58367:intron | 30.0% | |
| GAATGTAACCACATATTGTT+GGG | - | chr2.3:19214563-19214582 | None:intergenic | 30.0% | |
| GAGTACATTTCAGTTCTTAT+TGG | + | chr2.3:19215462-19215481 | MS.gene58367:intron | 30.0% | |
| GTGAACAAGATATGTTACAT+AGG | - | chr2.3:19216360-19216379 | None:intergenic | 30.0% | |
| TAGATCAAAATACTGATGGT+TGG | + | chr2.3:19214635-19214654 | MS.gene58367:intron | 30.0% | |
| TATGGGAAGACAATAACTAA+AGG | - | chr2.3:19214299-19214318 | None:intergenic | 30.0% | |
| TATGTTGATACATACAACAG+AGG | + | chr2.3:19217011-19217030 | MS.gene58367:intron | 30.0% | |
| TATGTTGTATAGCACTCTAA+GGG | + | chr2.3:19214814-19214833 | MS.gene58367:intron | 30.0% | |
| TGAATATTCTATACTCTCTC+TGG | + | chr2.3:19216455-19216474 | MS.gene58367:intron | 30.0% | |
| TGAATGTAACCACATATTGT+TGG | - | chr2.3:19214564-19214583 | None:intergenic | 30.0% | |
| TGTCAAAACAATAATTCCTC+CGG | - | chr2.3:19215016-19215035 | None:intergenic | 30.0% | |
| TGTTGGACAATTTATAAGTG+AGG | + | chr2.3:19214418-19214437 | MS.gene58367:intron | 30.0% | |
| TTATGTTGTATAGCACTCTA+AGG | + | chr2.3:19214813-19214832 | MS.gene58367:intron | 30.0% | |
| TTGTAGATGATCTCATTTCT+CGG | + | chr2.3:19213976-19213995 | MS.gene58367:CDS | 30.0% | |
| ! | AACATGACTACCATATTTTC+TGG | - | chr2.3:19215635-19215654 | None:intergenic | 30.0% |
| ! | AGAGAGAGTATAGAATATTC+AGG | - | chr2.3:19216456-19216475 | None:intergenic | 30.0% |
| ! | AGTCTAGTTCGGATATAAAT+TGG | + | chr2.3:19214717-19214736 | MS.gene58367:intron | 30.0% |
| ! | ATAAGCATTCCCTTTTACAT+TGG | + | chr2.3:19214316-19214335 | MS.gene58367:intron | 30.0% |
| ! | GTAACATAAAAGGCTTTTTG+TGG | + | chr2.3:19215535-19215554 | MS.gene58367:intron | 30.0% |
| !!! | GTCTGTTTGTTTTTTTTGTC+GGG | + | chr2.3:19215242-19215261 | MS.gene58367:intron | 30.0% |
| !!! | TTTGTTTTTTTTGTCGGGAT+GGG | + | chr2.3:19215247-19215266 | MS.gene58367:intron | 30.0% |
| !!! | TTTTTGGAATTTTCGCATGA+TGG | + | chr2.3:19216242-19216261 | MS.gene58367:intron | 30.0% |
| AAGAGTCAGAAATACAAGGA+AGG | + | chr2.3:19216871-19216890 | MS.gene58367:CDS | 35.0% | |
| AGAGTCAGAAATACAAGGAA+GGG | + | chr2.3:19216872-19216891 | MS.gene58367:CDS | 35.0% | |
| ATGATGGTAAATACCTTTGG+AGG | + | chr2.3:19216258-19216277 | MS.gene58367:intron | 35.0% | |
| ATGTTGTATAGCACTCTAAG+GGG | + | chr2.3:19214815-19214834 | MS.gene58367:intron | 35.0% | |
| CAAATTCTGCAGAACTCATT+TGG | + | chr2.3:19213950-19213969 | MS.gene58367:CDS | 35.0% | |
| CAGAAAAAGATGGATACAAC+AGG | - | chr2.3:19215142-19215161 | None:intergenic | 35.0% | |
| CAGCTCGTATGTTATTATTC+GGG | - | chr2.3:19215784-19215803 | None:intergenic | 35.0% | |
| CCAAATATACCAGTTACTCA+AGG | - | chr2.3:19214923-19214942 | None:intergenic | 35.0% | |
| CCAGCTCGTATGTTATTATT+CGG | - | chr2.3:19215785-19215804 | None:intergenic | 35.0% | |
| CCTTGAGTAACTGGTATATT+TGG | + | chr2.3:19214920-19214939 | MS.gene58367:intron | 35.0% | |
| GAAAAAGATGGATACAACAG+GGG | - | chr2.3:19215140-19215159 | None:intergenic | 35.0% | |
| GAGAAATGAGATCATCTACA+AGG | - | chr2.3:19213977-19213996 | None:intergenic | 35.0% | |
| GGCATTAATCTTCTCATGAT+AGG | + | chr2.3:19214837-19214856 | MS.gene58367:intron | 35.0% | |
| GTCTAGAAGGAAAATAAAGC+TGG | + | chr2.3:19216290-19216309 | MS.gene58367:intron | 35.0% | |
| TAGATGCAATGCAACATTTG+AGG | - | chr2.3:19215889-19215908 | None:intergenic | 35.0% | |
| TCTGCAGAATTTGCATCTAT+AGG | - | chr2.3:19213943-19213962 | None:intergenic | 35.0% | |
| TGAGAAGAGTCAGAAATACA+AGG | + | chr2.3:19216867-19216886 | MS.gene58367:CDS | 35.0% | |
| TGTAGATGATCTCATTTCTC+GGG | + | chr2.3:19213977-19213996 | MS.gene58367:CDS | 35.0% | |
| TTGATACATACAACAGAGGA+AGG | + | chr2.3:19217015-19217034 | MS.gene58367:intron | 35.0% | |
| TTTCTTATTATAAGGACCGG+AGG | + | chr2.3:19214997-19215016 | MS.gene58367:intron | 35.0% | |
| TTTGGCGATCATATAATAGC+TGG | - | chr2.3:19216179-19216198 | None:intergenic | 35.0% | |
| ! | AAGGGAAGTTTGTTCTTGAA+AGG | + | chr2.3:19216890-19216909 | MS.gene58367:CDS | 35.0% |
| ! | ACACCTTTTGCCAATGTAAA+AGG | - | chr2.3:19214329-19214348 | None:intergenic | 35.0% |
| ! | CACCTTTTGCCAATGTAAAA+GGG | - | chr2.3:19214328-19214347 | None:intergenic | 35.0% |
| ! | GTTGTATCCATCTTTTTCTG+TGG | + | chr2.3:19215142-19215161 | MS.gene58367:intron | 35.0% |
| ! | TCATGCTGAATGCAAGTTTT+AGG | - | chr2.3:19215591-19215610 | None:intergenic | 35.0% |
| ! | TGCACAGTCTTGATTTTTCT+TGG | + | chr2.3:19215304-19215323 | MS.gene58367:intron | 35.0% |
| ! | TTCCCTTTTACATTGGCAAA+AGG | + | chr2.3:19214323-19214342 | MS.gene58367:intron | 35.0% |
| !! | CAGTCAATTTTAGTCACTGA+TGG | - | chr2.3:19215493-19215512 | None:intergenic | 35.0% |
| !! | CATTAGGCTAGTTTGTATTG+TGG | - | chr2.3:19215712-19215731 | None:intergenic | 35.0% |
| !! | TGACAATGTTGATTCCTCAA+CGG | + | chr2.3:19217043-19217062 | MS.gene58367:CDS | 35.0% |
| !!! | GTTTGTTTTTTTTGTCGGGA+TGG | + | chr2.3:19215246-19215265 | MS.gene58367:intron | 35.0% |
| !!! | TTTTAGGTTCCTTGAGTAAC+TGG | + | chr2.3:19214911-19214930 | MS.gene58367:intron | 35.0% |
| AAACCACTACTACAGATCAC+AGG | - | chr2.3:19214215-19214234 | None:intergenic | 40.0% | |
| AACCACTACTACAGATCACA+GGG | - | chr2.3:19214214-19214233 | None:intergenic | 40.0% | |
| AGTAGACAGTGGTTATGCAT+AGG | + | chr2.3:19214766-19214785 | MS.gene58367:intron | 40.0% | |
| AGTCCTATATTTAGCGACAG+AGG | - | chr2.3:19216676-19216695 | None:intergenic | 40.0% | |
| ATGGAAAGGATGATGCTTTC+AGG | + | chr2.3:19216532-19216551 | MS.gene58367:CDS | 40.0% | |
| ATTGGATGTGATGTGAGTGT+TGG | + | chr2.3:19214401-19214420 | MS.gene58367:intron | 40.0% | |
| CAATAATCCAGCAGAGAAGT+TGG | - | chr2.3:19215360-19215379 | None:intergenic | 40.0% | |
| CAATGAAACGCCTGAAAGAA+GGG | - | chr2.3:19215407-19215426 | None:intergenic | 40.0% | |
| CATAATGCAGTGTTACACTG+TGG | + | chr2.3:19215842-19215861 | MS.gene58367:intron | 40.0% | |
| CCGAATAATAACATACGAGC+TGG | + | chr2.3:19215782-19215801 | MS.gene58367:intron | 40.0% | |
| CGCATGATGGTAAATACCTT+TGG | + | chr2.3:19216255-19216274 | MS.gene58367:intron | 40.0% | |
| GTACTCACGCTTTACTGAAT+AGG | - | chr2.3:19215448-19215467 | None:intergenic | 40.0% | |
| TCTTTGATCACCCTTCTTTC+AGG | + | chr2.3:19215394-19215413 | MS.gene58367:intron | 40.0% | |
| TGATGTGACCCAACAATATG+TGG | + | chr2.3:19214552-19214571 | MS.gene58367:intron | 40.0% | |
| TGTTGCTGTGGTCAAATAGT+TGG | + | chr2.3:19216583-19216602 | MS.gene58367:CDS | 40.0% | |
| ! | CAAAATACTGATGGTTGGCT+TGG | + | chr2.3:19214640-19214659 | MS.gene58367:intron | 40.0% |
| ! | CTCTGGTGTGCTTATGTTTT+GGG | + | chr2.3:19216472-19216491 | MS.gene58367:intron | 40.0% |
| ! | TCTCTGGTGTGCTTATGTTT+TGG | + | chr2.3:19216471-19216490 | MS.gene58367:intron | 40.0% |
| ! | TGGTAAATACCTTTGGAGGA+AGG | + | chr2.3:19216262-19216281 | MS.gene58367:intron | 40.0% |
| ! | TGTTGTATAGCACTCTAAGG+GGG | + | chr2.3:19214816-19214835 | MS.gene58367:intron | 40.0% |
| !! | GAAAGCATCATCCTTTCCAT+CGG | - | chr2.3:19216532-19216551 | None:intergenic | 40.0% |
| !!! | GATATCTTTTGCTGTTGCTG+TGG | + | chr2.3:19216571-19216590 | MS.gene58367:CDS | 40.0% |
| AGACATGTTCCTTCCTCCAA+AGG | - | chr2.3:19216274-19216293 | None:intergenic | 45.0% | |
| AGTCATGTCAGCATGAGTGA+TGG | + | chr2.3:19217080-19217099 | MS.gene58367:CDS | 45.0% | |
| ATCAAGACTGTGCATGCCTT+TGG | - | chr2.3:19215298-19215317 | None:intergenic | 45.0% | |
| ATGGGACACTAAGTAGACAG+TGG | + | chr2.3:19214755-19214774 | MS.gene58367:intron | 45.0% | |
| CAAGTTTCCAACTTCTCTGC+TGG | + | chr2.3:19215350-19215369 | MS.gene58367:intron | 45.0% | |
| CCACCTCTGTCGCTAAATAT+AGG | + | chr2.3:19216670-19216689 | MS.gene58367:intron | 45.0% | |
| CCTATATTTAGCGACAGAGG+TGG | - | chr2.3:19216673-19216692 | None:intergenic | 45.0% | |
| CGAGTAAAGGAGTCTCACAT+TGG | + | chr2.3:19214383-19214402 | MS.gene58367:intron | 45.0% | |
| GACACTGCCACAGAAAAAGA+TGG | - | chr2.3:19215152-19215171 | None:intergenic | 45.0% | |
| GAGGAAGGAACATGTCTAGA+AGG | + | chr2.3:19216277-19216296 | MS.gene58367:intron | 45.0% | |
| GCAATGAAACGCCTGAAAGA+AGG | - | chr2.3:19215408-19215427 | None:intergenic | 45.0% | |
| GCTGCAAGAGTCATTGACAA+TGG | + | chr2.3:19214662-19214681 | MS.gene58367:intron | 45.0% | |
| GCTTTCAGGATTGCATACTG+TGG | + | chr2.3:19216546-19216565 | MS.gene58367:CDS | 45.0% | |
| GGTTGTGCTACATCTAGTCA+TGG | + | chr2.3:19215863-19215882 | MS.gene58367:intron | 45.0% | |
| GTTCGATGTCTGACATGTGT+TGG | + | chr2.3:19214349-19214368 | MS.gene58367:intron | 45.0% | |
| TCATGTGCAGATTCCTGAGA+AGG | - | chr2.3:19216850-19216869 | None:intergenic | 45.0% | |
| TCTTTCAGGCGTTTCATTGC+CGG | + | chr2.3:19215408-19215427 | MS.gene58367:intron | 45.0% | |
| ! | AAGAATCTTTGTGGTGGAGC+TGG | + | chr2.3:19213908-19213927 | MS.gene58367:CDS | 45.0% |
| !! | GTTATTGGCTTCACTTCCCT+AGG | - | chr2.3:19215971-19215990 | None:intergenic | 45.0% |
| CAACTGGAACACCGATGGAA+AGG | + | chr2.3:19216518-19216537 | MS.gene58367:CDS | 50.0% | |
| CACCCTGTGATCTGTAGTAG+TGG | + | chr2.3:19214209-19214228 | MS.gene58367:intron | 50.0% | |
| CACTACTACAGATCACAGGG+TGG | - | chr2.3:19214211-19214230 | None:intergenic | 50.0% | |
| GCTGTGGTCAAATAGTTGGC+TGG | + | chr2.3:19216587-19216606 | MS.gene58367:CDS | 50.0% | |
| GGTTTGTCACGTGCGAGTAA+AGG | + | chr2.3:19214370-19214389 | MS.gene58367:intron | 50.0% | |
| TCCAGTGTGAACACCACAAC+TGG | + | chr2.3:19216502-19216521 | MS.gene58367:intron | 50.0% | |
| TCCAGTTGTGGTGTTCACAC+TGG | - | chr2.3:19216506-19216525 | None:intergenic | 50.0% | |
| ! | AATCTTTGTGGTGGAGCTGG+AGG | + | chr2.3:19213911-19213930 | MS.gene58367:CDS | 50.0% |
| ! | ATCTTTGTGGTGGAGCTGGA+GGG | + | chr2.3:19213912-19213931 | MS.gene58367:CDS | 50.0% |
| ! | TTCCATCGGTGTTCCAGTTG+TGG | - | chr2.3:19216518-19216537 | None:intergenic | 50.0% |
| ATAGGTATGCGTTCCCCCTC+CGG | - | chr2.3:19215430-19215449 | None:intergenic | 55.0% | |
| CACCACAACTGGAACACCGA+TGG | + | chr2.3:19216513-19216532 | MS.gene58367:CDS | 55.0% | |
| TCAGGCGTTTCATTGCCGGA+GGG | + | chr2.3:19215412-19215431 | MS.gene58367:intron | 55.0% | |
| TTCAGGCGTTTCATTGCCGG+AGG | + | chr2.3:19215411-19215430 | MS.gene58367:intron | 55.0% | |
| AGGCGTTTCATTGCCGGAGG+GGG | + | chr2.3:19215414-19215433 | MS.gene58367:intron | 60.0% | |
| CAGGCGTTTCATTGCCGGAG+GGG | + | chr2.3:19215413-19215432 | MS.gene58367:intron | 60.0% | |
| ! | TTGTGGTGGAGCTGGAGGGC+AGG | + | chr2.3:19213916-19213935 | MS.gene58367:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 19213903 | 19217115 | 19213903 | ID=MS.gene58367 |
| chr2.3 | mRNA | 19213903 | 19217115 | 19213903 | ID=MS.gene58367.t1;Parent=MS.gene58367 |
| chr2.3 | exon | 19213903 | 19213998 | 19213903 | ID=MS.gene58367.t1.exon1;Parent=MS.gene58367.t1 |
| chr2.3 | CDS | 19213903 | 19213998 | 19213903 | ID=cds.MS.gene58367.t1;Parent=MS.gene58367.t1 |
| chr2.3 | exon | 19215416 | 19215459 | 19215416 | ID=MS.gene58367.t1.exon2;Parent=MS.gene58367.t1 |
| chr2.3 | CDS | 19215416 | 19215459 | 19215416 | ID=cds.MS.gene58367.t1;Parent=MS.gene58367.t1 |
| chr2.3 | exon | 19216507 | 19216615 | 19216507 | ID=MS.gene58367.t1.exon3;Parent=MS.gene58367.t1 |
| chr2.3 | CDS | 19216507 | 19216615 | 19216507 | ID=cds.MS.gene58367.t1;Parent=MS.gene58367.t1 |
| chr2.3 | exon | 19216856 | 19216911 | 19216856 | ID=MS.gene58367.t1.exon4;Parent=MS.gene58367.t1 |
| chr2.3 | CDS | 19216856 | 19216911 | 19216856 | ID=cds.MS.gene58367.t1;Parent=MS.gene58367.t1 |
| chr2.3 | exon | 19217031 | 19217115 | 19217031 | ID=MS.gene58367.t1.exon5;Parent=MS.gene58367.t1 |
| chr2.3 | CDS | 19217031 | 19217115 | 19217031 | ID=cds.MS.gene58367.t1;Parent=MS.gene58367.t1 |
| Gene Sequence |
| Protein sequence |
