Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69238.t1 | AFK39854.1 | 100 | 129 | 0 | 0 | 1 | 129 | 1 | 129 | 1.50E-69 | 271.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69238.t1 | P59234 | 75.2 | 129 | 32 | 0 | 1 | 129 | 1 | 129 | 1.7e-53 | 209.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69238.t1 | G7JB73 | 100.0 | 129 | 0 | 0 | 1 | 129 | 24 | 152 | 1.1e-69 | 271.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene69238 | 0.804501 | 2.10E-49 | -1.69E-46 |
| MS.gene055804 | MS.gene69238 | 0.801798 | 7.60E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene69238 | 0.829452 | 5.11E-55 | -1.69E-46 |
| MS.gene058736 | MS.gene69238 | 0.80573 | 1.16E-49 | -1.69E-46 |
| MS.gene058739 | MS.gene69238 | 0.803464 | 3.44E-49 | -1.69E-46 |
| MS.gene059896 | MS.gene69238 | -0.812522 | 4.06E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06671 | MS.gene69238 | PPI |
| MS.gene013560 | MS.gene69238 | PPI |
| MS.gene69238 | MS.gene71872 | PPI |
| MS.gene06887 | MS.gene69238 | PPI |
| MS.gene69238 | MS.gene057133 | PPI |
| MS.gene69238 | MS.gene58367 | PPI |
| MS.gene060686 | MS.gene69238 | PPI |
| MS.gene059765 | MS.gene69238 | PPI |
| MS.gene69238 | MS.gene06889 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69238.t1 | MTR_3g070330 | 100.000 | 129 | 0 | 0 | 1 | 129 | 24 | 152 | 6.83e-95 | 270 |
| MS.gene69238.t1 | MTR_3g070330 | 100.000 | 102 | 0 | 0 | 1 | 102 | 24 | 125 | 1.64e-73 | 215 |
| MS.gene69238.t1 | MTR_5g082490 | 76.562 | 128 | 30 | 0 | 1 | 128 | 1 | 128 | 6.84e-72 | 211 |
| MS.gene69238.t1 | MTR_7g068250 | 73.451 | 113 | 30 | 0 | 1 | 113 | 1 | 113 | 9.07e-60 | 180 |
| MS.gene69238.t1 | MTR_2g078670 | 57.031 | 128 | 55 | 0 | 1 | 128 | 1 | 128 | 8.47e-51 | 157 |
| MS.gene69238.t1 | MTR_8g058785 | 52.344 | 128 | 61 | 0 | 1 | 128 | 1 | 128 | 2.77e-45 | 144 |
| MS.gene69238.t1 | MTR_8g061270 | 52.344 | 128 | 61 | 0 | 1 | 128 | 1 | 128 | 2.77e-45 | 144 |
| MS.gene69238.t1 | MTR_4g088505 | 51.562 | 128 | 60 | 1 | 1 | 128 | 1 | 126 | 7.86e-45 | 142 |
| MS.gene69238.t1 | MTR_8g027255 | 52.128 | 94 | 45 | 0 | 12 | 105 | 8 | 101 | 2.13e-33 | 113 |
| MS.gene69238.t1 | MTR_3g091840 | 51.064 | 94 | 46 | 0 | 12 | 105 | 8 | 101 | 2.71e-33 | 112 |
| MS.gene69238.t1 | MTR_4g088505 | 57.831 | 83 | 35 | 0 | 1 | 83 | 1 | 83 | 7.55e-32 | 109 |
| MS.gene69238.t1 | MTR_1g077750 | 46.067 | 89 | 47 | 1 | 8 | 95 | 3 | 91 | 5.60e-28 | 99.4 |
| MS.gene69238.t1 | MTR_1g077760 | 51.852 | 54 | 26 | 0 | 48 | 101 | 1 | 54 | 4.40e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69238.t1 | AT2G40110 | 80.620 | 129 | 24 | 1 | 1 | 128 | 1 | 129 | 3.98e-77 | 224 |
| MS.gene69238.t1 | AT3G11230 | 69.531 | 128 | 39 | 0 | 1 | 128 | 1 | 128 | 2.04e-64 | 192 |
| MS.gene69238.t1 | AT3G11230 | 69.531 | 128 | 39 | 0 | 1 | 128 | 34 | 161 | 4.41e-64 | 192 |
| MS.gene69238.t1 | AT2G40110 | 83.495 | 103 | 17 | 0 | 1 | 103 | 1 | 103 | 3.58e-63 | 188 |
| MS.gene69238.t1 | AT3G08990 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.53e-60 | 181 |
| MS.gene69238.t1 | AT3G08990 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.53e-60 | 181 |
| MS.gene69238.t1 | AT3G08990 | 64.062 | 128 | 46 | 0 | 1 | 128 | 1 | 128 | 4.53e-60 | 181 |
| MS.gene69238.t1 | AT3G55890 | 66.102 | 118 | 40 | 0 | 1 | 118 | 1 | 118 | 1.44e-56 | 172 |
| MS.gene69238.t1 | AT3G55890 | 66.102 | 118 | 40 | 0 | 1 | 118 | 1 | 118 | 1.44e-56 | 172 |
| MS.gene69238.t1 | AT3G11230 | 73.529 | 102 | 27 | 0 | 1 | 102 | 1 | 102 | 5.12e-53 | 162 |
| MS.gene69238.t1 | AT3G11230 | 73.529 | 102 | 27 | 0 | 1 | 102 | 34 | 135 | 9.71e-53 | 163 |
| MS.gene69238.t1 | AT5G53940 | 57.812 | 128 | 54 | 0 | 1 | 128 | 1 | 128 | 1.87e-51 | 159 |
| MS.gene69238.t1 | AT3G55890 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 3.01e-50 | 155 |
| MS.gene69238.t1 | AT3G55890 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 3.01e-50 | 155 |
| MS.gene69238.t1 | AT2G40110 | 83.133 | 83 | 14 | 0 | 1 | 83 | 1 | 83 | 7.81e-50 | 154 |
| MS.gene69238.t1 | AT2G40110 | 83.133 | 83 | 14 | 0 | 1 | 83 | 1 | 83 | 7.81e-50 | 154 |
| MS.gene69238.t1 | AT4G27745 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 5.81e-34 | 114 |
| MS.gene69238.t1 | AT4G27745 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 5.81e-34 | 114 |
| MS.gene69238.t1 | AT4G27745 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 5.81e-34 | 114 |
| MS.gene69238.t1 | AT4G27745 | 51.020 | 98 | 48 | 0 | 12 | 109 | 8 | 105 | 5.81e-34 | 114 |
| MS.gene69238.t1 | AT4G27740 | 41.935 | 93 | 54 | 0 | 14 | 106 | 10 | 102 | 3.34e-22 | 84.7 |
Find 28 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCCTTCCTTGTACTTT+TGG | 0.231498 | 3.2:+64077038 | None:intergenic |
| GAGATAAGCTTTCCCATGTC+TGG | 0.391588 | 3.2:+64077845 | None:intergenic |
| GAGGAGAGACCGATGATGAC+TGG | 0.424174 | 3.2:-64077226 | MS.gene69238:CDS |
| GTCCTGATGGTAGCAATTAT+CGG | 0.430362 | 3.2:-64076603 | MS.gene69238:CDS |
| GACAGCGTGAATGTTTCTCT+TGG | 0.452417 | 3.2:-64077256 | MS.gene69238:intron |
| TTGTTTGTGATCAATCTAGA+AGG | 0.468502 | 3.2:-64078818 | MS.gene69238:CDS |
| GTGGGTTGTGGATCGATTGT+GGG | 0.474305 | 3.2:-64077175 | MS.gene69238:CDS |
| ATCCGATAATTGCTACCATC+AGG | 0.497420 | 3.2:+64076601 | None:intergenic |
| TTGGGCAGGTACAAGGTATC+AGG | 0.498809 | 3.2:-64076625 | MS.gene69238:intron |
| TGTGGGTTGTGGATCGATTG+TGG | 0.505248 | 3.2:-64077176 | MS.gene69238:CDS |
| TGTGTTATTGGGCAGGTACA+AGG | 0.508400 | 3.2:-64076632 | MS.gene69238:intron |
| TGTCTTCATATAAAGCAAGA+TGG | 0.516171 | 3.2:+64078765 | None:intergenic |
| GTTGTGGATCGATTGTGGGT+TGG | 0.527280 | 3.2:-64077171 | MS.gene69238:CDS |
| TAGACTTTCCACTCCAGACA+TGG | 0.535000 | 3.2:-64077858 | MS.gene69238:CDS |
| ATATGAAGACATCGTTTCCA+AGG | 0.539876 | 3.2:-64078753 | MS.gene69238:intron |
| GTCTTCATATAAAGCAAGAT+GGG | 0.551967 | 3.2:+64078766 | None:intergenic |
| AACAATGGAGCACATGTTGG+CGG | 0.552605 | 3.2:-64076577 | MS.gene69238:CDS |
| AAGGAAAGTCTGTGCTTGAA+AGG | 0.559471 | 3.2:-64077024 | MS.gene69238:intron |
| ATCAACAATGGAGCACATGT+TGG | 0.564033 | 3.2:-64076580 | MS.gene69238:CDS |
| AGCAATTATCGGATCAACAA+TGG | 0.565705 | 3.2:-64076592 | MS.gene69238:CDS |
| AAAGACCAAAAGTACAAGGA+AGG | 0.567472 | 3.2:-64077043 | MS.gene69238:CDS |
| AGGAGAGACCGATGATGACT+GGG | 0.570959 | 3.2:-64077225 | MS.gene69238:CDS |
| ATGGGTGCGACAGTATCTGC+AGG | 0.576144 | 3.2:+64078784 | None:intergenic |
| AGACTTTCCACTCCAGACAT+GGG | 0.598992 | 3.2:-64077857 | MS.gene69238:CDS |
| AAGCTTTCCCATGTCTGGAG+TGG | 0.608663 | 3.2:+64077850 | None:intergenic |
| TACAAGGTATCAGGTCCTGA+TGG | 0.616196 | 3.2:-64076616 | MS.gene69238:CDS |
| GTATGCAACCCAGTCATCAT+CGG | 0.616477 | 3.2:+64077217 | None:intergenic |
| TGTTTCTCTTGGCGAAACAG+AGG | 0.620615 | 3.2:-64077245 | MS.gene69238:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATGGTAATTTTATAAT+TGG | - | chr3.2:64077427-64077446 | MS.gene69238:intron | 10.0% |
| !!! | TTTATGGTAATTTTATAATT+GGG | - | chr3.2:64077428-64077447 | MS.gene69238:intron | 10.0% |
| !!! | AGATTAAAAACTAACATTTT+CGG | + | chr3.2:64078028-64078047 | None:intergenic | 15.0% |
| !!! | ATAAGATGTTTTAATAAACA+TGG | + | chr3.2:64078574-64078593 | None:intergenic | 15.0% |
| !!! | ATGTTTTATTTCAATTTCTT+AGG | + | chr3.2:64077606-64077625 | None:intergenic | 15.0% |
| !!! | TAAGATGTTTTAATAAACAT+GGG | + | chr3.2:64078573-64078592 | None:intergenic | 15.0% |
| !!! | TTATGGTAATTTTATAATTG+GGG | - | chr3.2:64077429-64077448 | MS.gene69238:intron | 15.0% |
| !!! | TTTTAAATTAGAGTTACTTA+TGG | - | chr3.2:64077948-64077967 | MS.gene69238:intron | 15.0% |
| !! | AAAAACTCAATTAAGAATTC+GGG | + | chr3.2:64077455-64077474 | None:intergenic | 20.0% |
| !! | AATATGAAATCATATCATTG+CGG | - | chr3.2:64077974-64077993 | MS.gene69238:intron | 20.0% |
| !! | AATCTAAACCATTACATAAT+TGG | + | chr3.2:64078722-64078741 | None:intergenic | 20.0% |
| !! | ATGTGAACTTATATAATATG+TGG | + | chr3.2:64077082-64077101 | None:intergenic | 20.0% |
| !! | CAAAAATATATTGTAACAAG+AGG | + | chr3.2:64078055-64078074 | None:intergenic | 20.0% |
| !! | GAAAAACTCAATTAAGAATT+CGG | + | chr3.2:64077456-64077475 | None:intergenic | 20.0% |
| !! | TCAATTATATCCTTAAAAAG+AGG | + | chr3.2:64078084-64078103 | None:intergenic | 20.0% |
| !! | TTATATAATATGTGGCAAAA+AGG | + | chr3.2:64077074-64077093 | None:intergenic | 20.0% |
| !!! | AAAGTCTAAAATAATCACAT+GGG | + | chr3.2:64077512-64077531 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATAAATTTTAG+CGG | + | chr3.2:64077916-64077935 | None:intergenic | 20.0% |
| !!! | ATTAGATGAATTGTGTTATT+GGG | - | chr3.2:64078739-64078758 | MS.gene69238:intron | 20.0% |
| !!! | TGTTTTCTTTTGGAAATTTA+TGG | - | chr3.2:64077412-64077431 | MS.gene69238:intron | 20.0% |
| !!! | TTAGTCTTTTTGTTTTCTTT+TGG | - | chr3.2:64077402-64077421 | MS.gene69238:intron | 20.0% |
| !!! | TTTTTCGCTATTATTTTTCT+GGG | - | chr3.2:64076680-64076699 | MS.gene69238:intron | 20.0% |
| !!! | TTTTTTCGCTATTATTTTTC+TGG | - | chr3.2:64076679-64076698 | MS.gene69238:intron | 20.0% |
| ! | ACATTGAGTAGTAGTATTAT+AGG | - | chr3.2:64076938-64076957 | MS.gene69238:intron | 25.0% |
| ! | ACTGTATTTATTATCTTGGT+TGG | - | chr3.2:64076903-64076922 | MS.gene69238:intron | 25.0% |
| ! | AGTAGTATTATAGGCTAAAT+TGG | - | chr3.2:64076947-64076966 | MS.gene69238:intron | 25.0% |
| ! | ATATTTACAAAGTTTCAAGC+TGG | - | chr3.2:64077015-64077034 | MS.gene69238:intron | 25.0% |
| ! | GACATCACTTTGATTATATT+AGG | + | chr3.2:64078411-64078430 | None:intergenic | 25.0% |
| ! | GATTAGATGAATTGTGTTAT+TGG | - | chr3.2:64078738-64078757 | MS.gene69238:intron | 25.0% |
| ! | GTAACTCTAATTTAAAAGCT+TGG | + | chr3.2:64077945-64077964 | None:intergenic | 25.0% |
| ! | TGGAAATATGTAAGATTATG+AGG | - | chr3.2:64078231-64078250 | MS.gene69238:intron | 25.0% |
| ! | TTAGTAACGTTACAATAAGT+TGG | - | chr3.2:64077047-64077066 | MS.gene69238:CDS | 25.0% |
| ! | TTGCACTGTATTTATTATCT+TGG | - | chr3.2:64076899-64076918 | MS.gene69238:intron | 25.0% |
| !! | AAGTCTAAAATAATCACATG+GGG | + | chr3.2:64077511-64077530 | None:intergenic | 25.0% |
| !! | ATATCATTCACTAGTATTGA+GGG | + | chr3.2:64077328-64077347 | None:intergenic | 25.0% |
| !! | GAAAGTCTAAAATAATCACA+TGG | + | chr3.2:64077513-64077532 | None:intergenic | 25.0% |
| !!! | ATTTTAGCGGTTAACTTTTT+AGG | + | chr3.2:64077903-64077922 | None:intergenic | 25.0% |
| !!! | GATTATTTTAGACTTCAAGT+TGG | - | chr3.2:64076986-64077005 | MS.gene69238:intron | 25.0% |
| AACAGAGTCCAATTATGTAA+TGG | - | chr3.2:64078711-64078730 | MS.gene69238:intron | 30.0% | |
| AACCATGAACACAAATGAAT+TGG | + | chr3.2:64076778-64076797 | None:intergenic | 30.0% | |
| AAGACTATTGAGAGAACTTA+TGG | - | chr3.2:64078497-64078516 | MS.gene69238:intron | 30.0% | |
| AATACTAGTGAATGATATGG+AGG | - | chr3.2:64077330-64077349 | MS.gene69238:intron | 30.0% | |
| ACATTAGACATACATCATTG+TGG | + | chr3.2:64077172-64077191 | None:intergenic | 30.0% | |
| ACTAAAAGCTACATGAAAGA+AGG | + | chr3.2:64078282-64078301 | None:intergenic | 30.0% | |
| AGAGAAAAAGGTGATGAAAA+AGG | + | chr3.2:64076657-64076676 | None:intergenic | 30.0% | |
| AGCGAAAAAAAGAGAGAAAA+AGG | + | chr3.2:64076669-64076688 | None:intergenic | 30.0% | |
| CAACTTGGTATATTTCAACT+TGG | + | chr3.2:64077241-64077260 | None:intergenic | 30.0% | |
| CAATTAGACATATCTCAACT+TGG | + | chr3.2:64077256-64077275 | None:intergenic | 30.0% | |
| CATAAAGAGTCTCTTTAGAT+TGG | - | chr3.2:64078439-64078458 | MS.gene69238:intron | 30.0% | |
| CATATCATTCACTAGTATTG+AGG | + | chr3.2:64077329-64077348 | None:intergenic | 30.0% | |
| CTCAATACTAGTGAATGATA+TGG | - | chr3.2:64077327-64077346 | MS.gene69238:intron | 30.0% | |
| GTCTTCATATAAAGCAAGAT+GGG | + | chr3.2:64076619-64076638 | None:intergenic | 30.0% | |
| TACATAATTGGACTCTGTTT+GGG | + | chr3.2:64078710-64078729 | None:intergenic | 30.0% | |
| TACCAATTCATTTGTGTTCA+TGG | - | chr3.2:64076773-64076792 | MS.gene69238:intron | 30.0% | |
| TGCAAAGACATTACCATTAT+TGG | + | chr3.2:64077653-64077672 | None:intergenic | 30.0% | |
| TGTCTTCATATAAAGCAAGA+TGG | + | chr3.2:64076620-64076639 | None:intergenic | 30.0% | |
| TTACATAATTGGACTCTGTT+TGG | + | chr3.2:64078711-64078730 | None:intergenic | 30.0% | |
| TTGTTTGTGATCAATCTAGA+AGG | - | chr3.2:64076564-64076583 | MS.gene69238:CDS | 30.0% | |
| ! | ACACTAGCATTATTTTCCTT+TGG | + | chr3.2:64077366-64077385 | None:intergenic | 30.0% |
| ! | GTTTATTTGAGATTATCCAC+TGG | - | chr3.2:64078461-64078480 | MS.gene69238:intron | 30.0% |
| !! | AATTTGTTGAGAATCTATGC+TGG | + | chr3.2:64077303-64077322 | None:intergenic | 30.0% |
| !! | ACACTAAAGGAGTATTAAGA+AGG | - | chr3.2:64077835-64077854 | MS.gene69238:CDS | 30.0% |
| !! | GTAGCTTTTAGTTACAGAAA+TGG | - | chr3.2:64078290-64078309 | MS.gene69238:intron | 30.0% |
| AGCAATTATCGGATCAACAA+TGG | - | chr3.2:64078790-64078809 | MS.gene69238:CDS | 35.0% | |
| AGTATTAAGAAGGAGGTTCA+GGG | - | chr3.2:64077845-64077864 | MS.gene69238:CDS | 35.0% | |
| ATAATAAGATGATGCACAGG+CGG | + | chr3.2:64077757-64077776 | None:intergenic | 35.0% | |
| ATATGAAGACATCGTTTCCA+AGG | - | chr3.2:64076629-64076648 | MS.gene69238:intron | 35.0% | |
| GCAATAATAAGATGATGCAC+AGG | + | chr3.2:64077760-64077779 | None:intergenic | 35.0% | |
| TCTATCTAACCGATGAGAAA+AGG | + | chr3.2:64076742-64076761 | None:intergenic | 35.0% | |
| TGGAGGATATTATCTTCCAA+AGG | - | chr3.2:64077347-64077366 | MS.gene69238:intron | 35.0% | |
| ! | AAAGACCAAAAGTACAAGGA+AGG | - | chr3.2:64078339-64078358 | MS.gene69238:intron | 35.0% |
| ! | AACATTTTCGGTCAACACTT+TGG | + | chr3.2:64078016-64078035 | None:intergenic | 35.0% |
| ! | AATGGTAATGTCTTTGCATG+TGG | - | chr3.2:64077655-64077674 | MS.gene69238:intron | 35.0% |
| ! | ACTTTCCTTCCTTGTACTTT+TGG | + | chr3.2:64078347-64078366 | None:intergenic | 35.0% |
| ! | CGAAAAAGACCAAAAGTACA+AGG | - | chr3.2:64078335-64078354 | MS.gene69238:intron | 35.0% |
| ! | TCCATTCATCCTTTTCTCAT+CGG | - | chr3.2:64076730-64076749 | MS.gene69238:intron | 35.0% |
| ! | TTTGCAGTTGCCTCTTTTTA+AGG | - | chr3.2:64078071-64078090 | MS.gene69238:intron | 35.0% |
| !! | CTAAAGGAGTATTAAGAAGG+AGG | - | chr3.2:64077838-64077857 | MS.gene69238:CDS | 35.0% |
| !! | GTACTTTTGGTCTTTTTCGT+GGG | + | chr3.2:64078334-64078353 | None:intergenic | 35.0% |
| !! | GTTAACTTTTTAGGAGGAGA+GGG | + | chr3.2:64077894-64077913 | None:intergenic | 35.0% |
| !! | TGTACTTTTGGTCTTTTTCG+TGG | + | chr3.2:64078335-64078354 | None:intergenic | 35.0% |
| !! | TTAGCGGTTAACTTTTTAGG+AGG | + | chr3.2:64077900-64077919 | None:intergenic | 35.0% |
| AAGGAAAGTCTGTGCTTGAA+AGG | - | chr3.2:64078358-64078377 | MS.gene69238:intron | 40.0% | |
| ACCGATGAGAAAAGGATGAA+TGG | + | chr3.2:64076734-64076753 | None:intergenic | 40.0% | |
| AGGTGATGAAAAAGGAACCT+TGG | + | chr3.2:64076649-64076668 | None:intergenic | 40.0% | |
| ATCAACAATGGAGCACATGT+TGG | - | chr3.2:64078802-64078821 | MS.gene69238:CDS | 40.0% | |
| ATCCGATAATTGCTACCATC+AGG | + | chr3.2:64078784-64078803 | None:intergenic | 40.0% | |
| GACATTACCATTATTGGCGA+CGG | + | chr3.2:64077647-64077666 | None:intergenic | 40.0% | |
| GAGTATTAAGAAGGAGGTTC+AGG | - | chr3.2:64077844-64077863 | MS.gene69238:CDS | 40.0% | |
| GCTGGTTACGATTTACAACT+TGG | + | chr3.2:64077285-64077304 | None:intergenic | 40.0% | |
| GGTATGAGTTTGGACACTAA+AGG | - | chr3.2:64077822-64077841 | MS.gene69238:intron | 40.0% | |
| GTCCTGATGGTAGCAATTAT+CGG | - | chr3.2:64078779-64078798 | MS.gene69238:CDS | 40.0% | |
| TAATAAGATGATGCACAGGC+GGG | + | chr3.2:64077756-64077775 | None:intergenic | 40.0% | |
| ! | GATGAATTGTGTTATTGGGC+AGG | - | chr3.2:64078743-64078762 | MS.gene69238:intron | 40.0% |
| ! | GTAGCTGACATTTTCTGTGT+GGG | - | chr3.2:64078189-64078208 | MS.gene69238:intron | 40.0% |
| ! | GTATCGTACTGGTATGAGTT+TGG | - | chr3.2:64077812-64077831 | MS.gene69238:intron | 40.0% |
| ! | TGTAGCTGACATTTTCTGTG+TGG | - | chr3.2:64078188-64078207 | MS.gene69238:intron | 40.0% |
| !! | GGTTAACTTTTTAGGAGGAG+AGG | + | chr3.2:64077895-64077914 | None:intergenic | 40.0% |
| !! | TACAGAAATGGTGCTGTTTC+AGG | - | chr3.2:64078302-64078321 | MS.gene69238:intron | 40.0% |
| AACAATGGAGCACATGTTGG+CGG | - | chr3.2:64078805-64078824 | MS.gene69238:CDS | 45.0% | |
| ACCAGTACGATACACCTTCA+GGG | + | chr3.2:64077805-64077824 | None:intergenic | 45.0% | |
| AGACTTTCCACTCCAGACAT+GGG | - | chr3.2:64077525-64077544 | MS.gene69238:intron | 45.0% | |
| ATTGAGACCGTCGCCAATAA+TGG | - | chr3.2:64077637-64077656 | MS.gene69238:intron | 45.0% | |
| CTTACAAGTGCTTATGCCAG+TGG | + | chr3.2:64078480-64078499 | None:intergenic | 45.0% | |
| GACAGCGTGAATGTTTCTCT+TGG | - | chr3.2:64078126-64078145 | MS.gene69238:intron | 45.0% | |
| GAGATAAGCTTTCCCATGTC+TGG | + | chr3.2:64077540-64077559 | None:intergenic | 45.0% | |
| GTATGCAACCCAGTCATCAT+CGG | + | chr3.2:64078168-64078187 | None:intergenic | 45.0% | |
| TACCAGTACGATACACCTTC+AGG | + | chr3.2:64077806-64077825 | None:intergenic | 45.0% | |
| TAGACTTTCCACTCCAGACA+TGG | - | chr3.2:64077524-64077543 | MS.gene69238:intron | 45.0% | |
| TATGTCGATCAAGTCCCTGA+AGG | - | chr3.2:64077788-64077807 | MS.gene69238:intron | 45.0% | |
| TGTTTCTCTTGGCGAAACAG+AGG | - | chr3.2:64078137-64078156 | MS.gene69238:intron | 45.0% | |
| ! | TACAAGGTATCAGGTCCTGA+TGG | - | chr3.2:64078766-64078785 | MS.gene69238:CDS | 45.0% |
| ! | TGTGTTATTGGGCAGGTACA+AGG | - | chr3.2:64078750-64078769 | MS.gene69238:intron | 45.0% |
| !! | GACATTTTCTGTGTGGGTTG+TGG | - | chr3.2:64078195-64078214 | MS.gene69238:intron | 45.0% |
| AAGCTTTCCCATGTCTGGAG+TGG | + | chr3.2:64077535-64077554 | None:intergenic | 50.0% | |
| AGGAGAGACCGATGATGACT+GGG | - | chr3.2:64078157-64078176 | MS.gene69238:intron | 50.0% | |
| GTTGTGGATCGATTGTGGGT+TGG | - | chr3.2:64078211-64078230 | MS.gene69238:intron | 50.0% | |
| ! | GTGGGTTGTGGATCGATTGT+GGG | - | chr3.2:64078207-64078226 | MS.gene69238:intron | 50.0% |
| ! | TCCCTGAAGGTGTATCGTAC+TGG | - | chr3.2:64077801-64077820 | MS.gene69238:intron | 50.0% |
| ! | TGTGGGTTGTGGATCGATTG+TGG | - | chr3.2:64078206-64078225 | MS.gene69238:intron | 50.0% |
| ! | TTGGGCAGGTACAAGGTATC+AGG | - | chr3.2:64078757-64078776 | MS.gene69238:CDS | 50.0% |
| ATGGGTGCGACAGTATCTGC+AGG | + | chr3.2:64076601-64076620 | None:intergenic | 55.0% | |
| GAGGAGAGACCGATGATGAC+TGG | - | chr3.2:64078156-64078175 | MS.gene69238:intron | 55.0% | |
| ATGATGCACAGGCGGGCATG+TGG | + | chr3.2:64077749-64077768 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 64076555 | 64078849 | 64076555 | ID=MS.gene69238 |
| chr3.2 | mRNA | 64076555 | 64078849 | 64076555 | ID=MS.gene69238.t1;Parent=MS.gene69238 |
| chr3.2 | exon | 64078754 | 64078849 | 64078754 | ID=MS.gene69238.t1.exon1;Parent=MS.gene69238.t1 |
| chr3.2 | CDS | 64078754 | 64078849 | 64078754 | ID=cds.MS.gene69238.t1;Parent=MS.gene69238.t1 |
| chr3.2 | exon | 64077834 | 64077877 | 64077834 | ID=MS.gene69238.t1.exon2;Parent=MS.gene69238.t1 |
| chr3.2 | CDS | 64077834 | 64077877 | 64077834 | ID=cds.MS.gene69238.t1;Parent=MS.gene69238.t1 |
| chr3.2 | exon | 64077165 | 64077273 | 64077165 | ID=MS.gene69238.t1.exon3;Parent=MS.gene69238.t1 |
| chr3.2 | CDS | 64077165 | 64077273 | 64077165 | ID=cds.MS.gene69238.t1;Parent=MS.gene69238.t1 |
| chr3.2 | exon | 64077025 | 64077080 | 64077025 | ID=MS.gene69238.t1.exon4;Parent=MS.gene69238.t1 |
| chr3.2 | CDS | 64077025 | 64077080 | 64077025 | ID=cds.MS.gene69238.t1;Parent=MS.gene69238.t1 |
| chr3.2 | exon | 64076555 | 64076639 | 64076555 | ID=MS.gene69238.t1.exon5;Parent=MS.gene69238.t1 |
| chr3.2 | CDS | 64076555 | 64076639 | 64076555 | ID=cds.MS.gene69238.t1;Parent=MS.gene69238.t1 |
| Gene Sequence |
| Protein sequence |
