Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059765.t1 | XP_013464647.1 | 95.3 | 129 | 6 | 0 | 1 | 129 | 1 | 129 | 3.40E-66 | 260.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059765.t1 | Q9FN32 | 76.7 | 129 | 30 | 0 | 1 | 129 | 1 | 129 | 2.3e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059765.t1 | A0A072VA37 | 95.3 | 129 | 6 | 0 | 1 | 129 | 1 | 129 | 2.5e-66 | 260.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059765 | MS.gene47311 | 0.809506 | 1.83E-50 | -1.69E-46 |
| MS.gene059765 | MS.gene71872 | 0.801905 | 7.22E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059765 | MS.gene06887 | PPI |
| MS.gene059765 | MS.gene057133 | PPI |
| MS.gene059765 | MS.gene057330 | PPI |
| MS.gene013560 | MS.gene059765 | PPI |
| MS.gene059765 | MS.gene06671 | PPI |
| MS.gene059765 | MS.gene06889 | PPI |
| MS.gene059765 | MS.gene69238 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059765.t1 | MTR_2g078670 | 95.349 | 129 | 6 | 0 | 1 | 129 | 1 | 129 | 5.25e-91 | 259 |
| MS.gene059765.t1 | MTR_8g058785 | 71.094 | 128 | 37 | 0 | 1 | 128 | 1 | 128 | 5.22e-63 | 188 |
| MS.gene059765.t1 | MTR_8g061270 | 71.094 | 128 | 37 | 0 | 1 | 128 | 1 | 128 | 5.22e-63 | 188 |
| MS.gene059765.t1 | MTR_4g088505 | 64.844 | 128 | 43 | 1 | 1 | 128 | 1 | 126 | 1.05e-58 | 177 |
| MS.gene059765.t1 | MTR_3g070330 | 57.031 | 128 | 55 | 0 | 1 | 128 | 24 | 151 | 2.11e-50 | 157 |
| MS.gene059765.t1 | MTR_7g068250 | 55.814 | 129 | 48 | 1 | 1 | 129 | 1 | 120 | 1.64e-48 | 151 |
| MS.gene059765.t1 | MTR_3g070330 | 65.686 | 102 | 35 | 0 | 1 | 102 | 24 | 125 | 8.01e-48 | 150 |
| MS.gene059765.t1 | MTR_5g082490 | 55.814 | 129 | 57 | 0 | 1 | 129 | 1 | 129 | 1.92e-46 | 146 |
| MS.gene059765.t1 | MTR_4g088505 | 68.235 | 85 | 27 | 0 | 1 | 85 | 1 | 85 | 2.13e-40 | 131 |
| MS.gene059765.t1 | MTR_3g091840 | 55.789 | 95 | 42 | 0 | 12 | 106 | 8 | 102 | 1.69e-34 | 115 |
| MS.gene059765.t1 | MTR_8g027255 | 48.421 | 95 | 49 | 0 | 12 | 106 | 8 | 102 | 3.34e-28 | 99.8 |
| MS.gene059765.t1 | MTR_1g077750 | 47.619 | 84 | 44 | 0 | 12 | 95 | 8 | 91 | 5.35e-27 | 96.7 |
| MS.gene059765.t1 | MTR_1g077760 | 48.980 | 49 | 25 | 0 | 53 | 101 | 6 | 54 | 3.37e-14 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059765.t1 | AT5G53940 | 76.744 | 129 | 30 | 0 | 1 | 129 | 1 | 129 | 1.28e-73 | 215 |
| MS.gene059765.t1 | AT2G40110 | 55.303 | 132 | 54 | 2 | 1 | 129 | 1 | 130 | 4.06e-50 | 156 |
| MS.gene059765.t1 | AT2G40110 | 64.706 | 102 | 36 | 0 | 1 | 102 | 1 | 102 | 1.04e-47 | 149 |
| MS.gene059765.t1 | AT3G08990 | 50.781 | 128 | 63 | 0 | 1 | 128 | 1 | 128 | 3.34e-47 | 148 |
| MS.gene059765.t1 | AT3G08990 | 50.781 | 128 | 63 | 0 | 1 | 128 | 1 | 128 | 3.34e-47 | 148 |
| MS.gene059765.t1 | AT3G08990 | 50.781 | 128 | 63 | 0 | 1 | 128 | 1 | 128 | 3.34e-47 | 148 |
| MS.gene059765.t1 | AT3G11230 | 60.000 | 105 | 42 | 0 | 1 | 105 | 1 | 105 | 3.55e-44 | 141 |
| MS.gene059765.t1 | AT3G55890 | 52.713 | 129 | 53 | 1 | 1 | 129 | 1 | 121 | 4.22e-44 | 140 |
| MS.gene059765.t1 | AT3G55890 | 52.713 | 129 | 53 | 1 | 1 | 129 | 1 | 121 | 4.22e-44 | 140 |
| MS.gene059765.t1 | AT3G11230 | 60.000 | 105 | 42 | 0 | 1 | 105 | 34 | 138 | 1.05e-43 | 140 |
| MS.gene059765.t1 | AT3G11230 | 61.765 | 102 | 39 | 0 | 1 | 102 | 1 | 102 | 1.25e-43 | 139 |
| MS.gene059765.t1 | AT3G11230 | 61.765 | 102 | 39 | 0 | 1 | 102 | 34 | 135 | 2.23e-43 | 139 |
| MS.gene059765.t1 | AT3G55890 | 59.406 | 101 | 41 | 0 | 1 | 101 | 1 | 101 | 1.62e-42 | 135 |
| MS.gene059765.t1 | AT3G55890 | 59.406 | 101 | 41 | 0 | 1 | 101 | 1 | 101 | 1.62e-42 | 135 |
| MS.gene059765.t1 | AT2G40110 | 60.000 | 85 | 34 | 0 | 1 | 85 | 1 | 85 | 1.50e-35 | 118 |
| MS.gene059765.t1 | AT2G40110 | 60.000 | 85 | 34 | 0 | 1 | 85 | 1 | 85 | 1.50e-35 | 118 |
| MS.gene059765.t1 | AT4G27745 | 54.737 | 95 | 43 | 0 | 12 | 106 | 8 | 102 | 4.53e-33 | 112 |
| MS.gene059765.t1 | AT4G27745 | 54.737 | 95 | 43 | 0 | 12 | 106 | 8 | 102 | 4.53e-33 | 112 |
| MS.gene059765.t1 | AT4G27745 | 54.737 | 95 | 43 | 0 | 12 | 106 | 8 | 102 | 4.53e-33 | 112 |
| MS.gene059765.t1 | AT4G27745 | 54.737 | 95 | 43 | 0 | 12 | 106 | 8 | 102 | 4.53e-33 | 112 |
| MS.gene059765.t1 | AT4G27740 | 39.785 | 93 | 56 | 0 | 13 | 105 | 9 | 101 | 4.10e-22 | 84.3 |
Find 34 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAAAGGATGATGCTTTC+AGG | 0.217955 | 2.4:+19891467 | MS.gene059765:CDS |
| TCTTTCAGGCGTTTCATTGC+CGG | 0.300182 | 2.4:+19890344 | MS.gene059765:intron |
| CAAATTCTGCAGAACTCATT+TGG | 0.346439 | 2.4:+19888744 | MS.gene059765:CDS |
| TCCAGTGTGACCACCACAAC+TGG | 0.378983 | 2.4:+19891437 | MS.gene059765:intron |
| TCTGCAGAATTTGCATCTAT+AGG | 0.389978 | 2.4:-19888734 | None:intergenic |
| GTACTCACGCTTTACTGAAT+AGG | 0.399679 | 2.4:-19890381 | None:intergenic |
| TGTTGCTGTGGTCAAATAGT+TGG | 0.420731 | 2.4:+19891518 | MS.gene059765:CDS |
| TTGTAGATGATCTCATTTCT+CGG | 0.425950 | 2.4:+19888770 | MS.gene059765:CDS |
| AAGAATCTTTGTGGTGGAGC+TGG | 0.437208 | 2.4:+19888702 | MS.gene059765:CDS |
| TTGTGGTGGAGCTGGAGGGC+AGG | 0.462348 | 2.4:+19888710 | MS.gene059765:CDS |
| TTCCATCGGTGTTCCAGTTG+TGG | 0.467942 | 2.4:-19891450 | None:intergenic |
| AAGGGAAGTTTGTTCTTGAA+AGG | 0.474035 | 2.4:+19891825 | MS.gene059765:CDS |
| AGGCGTTTCATTGCCGGAGG+GGG | 0.483191 | 2.4:+19890350 | MS.gene059765:intron |
| TGTAGATGATCTCATTTCTC+GGG | 0.483711 | 2.4:+19888771 | MS.gene059765:CDS |
| GAAAATGGGAAGAATCTTTG+TGG | 0.515998 | 2.4:+19888693 | None:intergenic |
| CATCGGTGTTCCAGTTGTGG+TGG | 0.545002 | 2.4:-19891447 | None:intergenic |
| AAGAGTCAGAAATACAAGGA+AGG | 0.546995 | 2.4:+19891806 | MS.gene059765:CDS |
| AATCTTTGTGGTGGAGCTGG+AGG | 0.548296 | 2.4:+19888705 | MS.gene059765:CDS |
| CACCACAACTGGAACACCGA+TGG | 0.553973 | 2.4:+19891448 | MS.gene059765:CDS |
| TTCAGGCGTTTCATTGCCGG+AGG | 0.558342 | 2.4:+19890347 | MS.gene059765:intron |
| CAACTGGAACACCGATGGAA+AGG | 0.571591 | 2.4:+19891453 | MS.gene059765:CDS |
| AGAGTCAGAAATACAAGGAA+GGG | 0.577637 | 2.4:+19891807 | MS.gene059765:CDS |
| ATCTTTGTGGTGGAGCTGGA+GGG | 0.585005 | 2.4:+19888706 | MS.gene059765:CDS |
| GAGAAATGAGATCATCTACA+AGG | 0.595304 | 2.4:-19888768 | None:intergenic |
| CAGGCGTTTCATTGCCGGAG+GGG | 0.602593 | 2.4:+19890349 | MS.gene059765:intron |
| TGACAATGTTGATTCCTCAA+CGG | 0.605876 | 2.4:+19891978 | MS.gene059765:CDS |
| GAAAGCATCATCCTTTCCAT+CGG | 0.609754 | 2.4:-19891464 | None:intergenic |
| TGAGAAGAGTCAGAAATACA+AGG | 0.613729 | 2.4:+19891802 | MS.gene059765:CDS |
| GCTGTGGTCAAATAGTTGGC+TGG | 0.614432 | 2.4:+19891522 | MS.gene059765:CDS |
| AGTCATGTCAGCATGAGTGA+TGG | 0.619256 | 2.4:+19892015 | MS.gene059765:CDS |
| TCAGGCGTTTCATTGCCGGA+GGG | 0.624574 | 2.4:+19890348 | MS.gene059765:intron |
| AATGGGAAGAATCTTTGTGG+TGG | 0.654666 | 2.4:+19888696 | None:intergenic |
| AGAAATGAGATCATCTACAA+GGG | 0.674311 | 2.4:-19888767 | None:intergenic |
| GCTTTCAGGATTGCATACTG+TGG | 0.726768 | 2.4:+19891481 | MS.gene059765:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAAAAATTCAATTTTT+AGG | + | chr2.4:19889832-19889851 | MS.gene059765:intron | 10.0% |
| !! | AGTAAATTCTTAATTATCAA+AGG | + | chr2.4:19888945-19888964 | MS.gene059765:intron | 15.0% |
| !! | ATGAAGTAAAAAGAAAATTA+GGG | + | chr2.4:19891315-19891334 | MS.gene059765:intron | 15.0% |
| !! | CAACAAAAAAACAAAAAATA+TGG | - | chr2.4:19889069-19889088 | None:intergenic | 15.0% |
| !! | TACAAAATTGTTTAATTCTT+AGG | + | chr2.4:19890857-19890876 | MS.gene059765:intron | 15.0% |
| !!! | AATAAAAAAGGTCAATATTT+TGG | - | chr2.4:19891132-19891151 | None:intergenic | 15.0% |
| !!! | GATAACAATTTTAAAACAAA+GGG | - | chr2.4:19890989-19891008 | None:intergenic | 15.0% |
| !!! | GTGAATTTTTTCTTATTATA+AGG | + | chr2.4:19889926-19889945 | MS.gene059765:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+TGG | + | chr2.4:19889534-19889553 | MS.gene059765:intron | 15.0% |
| !!! | TTTTAGTTAATCTTTTTCTT+TGG | + | chr2.4:19891055-19891074 | MS.gene059765:intron | 15.0% |
| !! | AGTGATAGTTTAAAAAGTAA+AGG | - | chr2.4:19888804-19888823 | None:intergenic | 20.0% |
| !! | CATGAAGTAAAAAGAAAATT+AGG | + | chr2.4:19891314-19891333 | MS.gene059765:intron | 20.0% |
| !! | GAAAAAGATTAACTAAAACA+TGG | - | chr2.4:19891053-19891072 | None:intergenic | 20.0% |
| !! | GTGATAGTTTAAAAAGTAAA+GGG | - | chr2.4:19888803-19888822 | None:intergenic | 20.0% |
| !! | TGATAGAAGAGAAATAAAAA+AGG | - | chr2.4:19891144-19891163 | None:intergenic | 20.0% |
| !!! | ATCAGTATTTTGATCTAATT+GGG | - | chr2.4:19889570-19889589 | None:intergenic | 20.0% |
| !!! | CGATAACAATTTTAAAACAA+AGG | - | chr2.4:19890990-19891009 | None:intergenic | 20.0% |
| !!! | TTCATTTCTTTTCAATACTA+GGG | + | chr2.4:19889027-19889046 | MS.gene059765:intron | 20.0% |
| !!! | TTTCATTTCTTTTCAATACT+AGG | + | chr2.4:19889026-19889045 | MS.gene059765:intron | 20.0% |
| !!! | TTTTTTCTTATTATAAGGAC+CGG | + | chr2.4:19889931-19889950 | MS.gene059765:intron | 20.0% |
| ! | AAATTTAGATGGAGTGAAAA+AGG | - | chr2.4:19891562-19891581 | None:intergenic | 25.0% |
| ! | CAATTAGATCAAAATACTGA+TGG | + | chr2.4:19889569-19889588 | MS.gene059765:intron | 25.0% |
| ! | CATTGAATAACTAGTGTATT+TGG | - | chr2.4:19889896-19889915 | None:intergenic | 25.0% |
| ! | CTAGACTAAAACAAAACAAA+AGG | - | chr2.4:19889642-19889661 | None:intergenic | 25.0% |
| ! | GCTAAATTTATTACTTCCAA+AGG | + | chr2.4:19890215-19890234 | MS.gene059765:intron | 25.0% |
| ! | GTCAATAACATAGAAACATT+AGG | - | chr2.4:19890664-19890683 | None:intergenic | 25.0% |
| ! | GTTATTATTCTATGTGCTTA+AGG | + | chr2.4:19889458-19889477 | MS.gene059765:intron | 25.0% |
| ! | TAGTGAGCAAATAAAGTTAT+TGG | - | chr2.4:19890922-19890941 | None:intergenic | 25.0% |
| ! | TCAGTTACATGAAATTTAGA+TGG | - | chr2.4:19891573-19891592 | None:intergenic | 25.0% |
| ! | TGCAAATAATCCAGAAAATA+TGG | + | chr2.4:19890558-19890577 | MS.gene059765:intron | 25.0% |
| ! | TGGCTATCAAAATTCTTAAT+GGG | + | chr2.4:19889675-19889694 | MS.gene059765:intron | 25.0% |
| ! | TTCTTGTAATAGAAACGATA+GGG | - | chr2.4:19889817-19889836 | None:intergenic | 25.0% |
| ! | TTGGCTATCAAAATTCTTAA+TGG | + | chr2.4:19889674-19889693 | MS.gene059765:intron | 25.0% |
| ! | TTTAGTAAATGATGTACCTA+GGG | + | chr2.4:19890888-19890907 | MS.gene059765:intron | 25.0% |
| ! | TTTCTTGTAATAGAAACGAT+AGG | - | chr2.4:19889818-19889837 | None:intergenic | 25.0% |
| !! | GATTGATAATTGTCGTTATT+TGG | + | chr2.4:19891349-19891368 | MS.gene059765:intron | 25.0% |
| !! | TCAATATAAGTGCCTATTTT+TGG | + | chr2.4:19891161-19891180 | MS.gene059765:intron | 25.0% |
| !!! | ACATTCAAGATAGTTTTGTT+TGG | + | chr2.4:19890449-19890468 | MS.gene059765:intron | 25.0% |
| !!! | AGTATTGATTATGTTTCAGT+AGG | + | chr2.4:19889982-19890001 | MS.gene059765:intron | 25.0% |
| !!! | CATCAGTATTTTGATCTAAT+TGG | - | chr2.4:19889571-19889590 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTGGTAACATAAA+AGG | + | chr2.4:19890461-19890480 | MS.gene059765:intron | 25.0% |
| !!! | TCTTACGATTTTAATCTTCA+AGG | + | chr2.4:19891698-19891717 | MS.gene059765:intron | 25.0% |
| !!! | TGTTTTGTTTTAGTCTAGTT+CGG | + | chr2.4:19889644-19889663 | MS.gene059765:intron | 25.0% |
| AAGGGTGATCAAAGATTATA+AGG | - | chr2.4:19890325-19890344 | None:intergenic | 30.0% | |
| AATATGGTGAAGATACTAGA+AGG | - | chr2.4:19889053-19889072 | None:intergenic | 30.0% | |
| AATCTTCTCATGATAGGTTT+AGG | + | chr2.4:19889780-19889799 | MS.gene059765:intron | 30.0% | |
| AATGTAAAAGGGAATGCTTA+TGG | - | chr2.4:19889110-19889129 | None:intergenic | 30.0% | |
| AATTCTTCACTACTTTCTTG+CGG | + | chr2.4:19890046-19890065 | MS.gene059765:intron | 30.0% | |
| ACAATTTACTATTCCTTCTC+AGG | + | chr2.4:19891769-19891788 | MS.gene059765:intron | 30.0% | |
| ACGACAATTATCAATCATTG+TGG | - | chr2.4:19891345-19891364 | None:intergenic | 30.0% | |
| AGAAAAAGATGGATACAACA+GGG | - | chr2.4:19890078-19890097 | None:intergenic | 30.0% | |
| AGAAATGAGATCATCTACAA+GGG | - | chr2.4:19888770-19888789 | None:intergenic | 30.0% | |
| ATATGCAAGATATGCACAAT+AGG | - | chr2.4:19891929-19891948 | None:intergenic | 30.0% | |
| ATATTATGTAGTCGCTATCT+TGG | + | chr2.4:19891863-19891882 | MS.gene059765:intron | 30.0% | |
| ATCGATAAAAAATTCCGTTG+AGG | - | chr2.4:19891995-19892014 | None:intergenic | 30.0% | |
| ATGTAAAAGGGAATGCTTAT+GGG | - | chr2.4:19889109-19889128 | None:intergenic | 30.0% | |
| CATGCGAAAATTCCAAAAAT+AGG | - | chr2.4:19891176-19891195 | None:intergenic | 30.0% | |
| CTTTAGTAAATGATGTACCT+AGG | + | chr2.4:19890887-19890906 | MS.gene059765:intron | 30.0% | |
| GAGTACATTTCAGTTCTTAT+TGG | + | chr2.4:19890398-19890417 | MS.gene059765:intron | 30.0% | |
| GTGAACAAGATATGTTACAT+AGG | - | chr2.4:19891295-19891314 | None:intergenic | 30.0% | |
| TAGATCAAAATACTGATGGT+TGG | + | chr2.4:19889573-19889592 | MS.gene059765:intron | 30.0% | |
| TATGGGAAGACAATAACTAA+AGG | - | chr2.4:19889092-19889111 | None:intergenic | 30.0% | |
| TATGTTGATACATACAACAG+AGG | + | chr2.4:19891946-19891965 | MS.gene059765:intron | 30.0% | |
| TATGTTGTATAGCACTCTAA+GGG | + | chr2.4:19889751-19889770 | MS.gene059765:intron | 30.0% | |
| TATTTGCTCACTATTCAAAC+AGG | + | chr2.4:19890929-19890948 | MS.gene059765:intron | 30.0% | |
| TGAATATTCTATACTCTCTC+TGG | + | chr2.4:19891390-19891409 | MS.gene059765:intron | 30.0% | |
| TGTTGGACAATTTATAAGTG+AGG | + | chr2.4:19889213-19889232 | MS.gene059765:intron | 30.0% | |
| TTATGTTGTATAGCACTCTA+AGG | + | chr2.4:19889750-19889769 | MS.gene059765:intron | 30.0% | |
| TTGTAGATGATCTCATTTCT+CGG | + | chr2.4:19888770-19888789 | MS.gene059765:CDS | 30.0% | |
| ! | AACATGACTACCATATTTTC+TGG | - | chr2.4:19890571-19890590 | None:intergenic | 30.0% |
| ! | AGAGAGAGTATAGAATATTC+AGG | - | chr2.4:19891391-19891410 | None:intergenic | 30.0% |
| ! | AGTCTAGTTCGGATATAAAT+TGG | + | chr2.4:19889655-19889674 | MS.gene059765:intron | 30.0% |
| ! | ATTTTGTGTGAAACCCATTT+GGG | + | chr2.4:19889260-19889279 | MS.gene059765:intron | 30.0% |
| ! | GTAACATAAAAGGCTTTTTG+TGG | + | chr2.4:19890471-19890490 | MS.gene059765:intron | 30.0% |
| !!! | GTGTCTGTTTGTTTTTTTGT+CGG | + | chr2.4:19890177-19890196 | MS.gene059765:intron | 30.0% |
| !!! | TGTCTGTTTGTTTTTTTGTC+GGG | + | chr2.4:19890178-19890197 | MS.gene059765:intron | 30.0% |
| !!! | TTTTTGGAATTTTCGCATGA+TGG | + | chr2.4:19891177-19891196 | MS.gene059765:intron | 30.0% |
| !!! | TTTTTTGAAGAAGCCAAATC+TGG | - | chr2.4:19889373-19889392 | None:intergenic | 30.0% |
| AAGAGTCAGAAATACAAGGA+AGG | + | chr2.4:19891806-19891825 | MS.gene059765:CDS | 35.0% | |
| AGAGTCAGAAATACAAGGAA+GGG | + | chr2.4:19891807-19891826 | MS.gene059765:CDS | 35.0% | |
| ATGATGGTAAAAACCTTTGG+AGG | + | chr2.4:19891193-19891212 | MS.gene059765:intron | 35.0% | |
| ATGTTGTATAGCACTCTAAG+GGG | + | chr2.4:19889752-19889771 | MS.gene059765:intron | 35.0% | |
| CAAATTCTGCAGAACTCATT+TGG | + | chr2.4:19888744-19888763 | MS.gene059765:CDS | 35.0% | |
| CAGAAAAAGATGGATACAAC+AGG | - | chr2.4:19890079-19890098 | None:intergenic | 35.0% | |
| CAGCTCGTATGTTATTATTC+GGG | - | chr2.4:19890720-19890739 | None:intergenic | 35.0% | |
| CCAAATATACCAGTTACTCA+AGG | - | chr2.4:19889860-19889879 | None:intergenic | 35.0% | |
| CCAGCTCGTATGTTATTATT+CGG | - | chr2.4:19890721-19890740 | None:intergenic | 35.0% | |
| CCTTGAGTAACTGGTATATT+TGG | + | chr2.4:19889857-19889876 | MS.gene059765:intron | 35.0% | |
| GAAAAAGATGGATACAACAG+GGG | - | chr2.4:19890077-19890096 | None:intergenic | 35.0% | |
| GAATGTAACCGCATATTGTT+GGG | - | chr2.4:19889501-19889520 | None:intergenic | 35.0% | |
| GAGAAATGAGATCATCTACA+AGG | - | chr2.4:19888771-19888790 | None:intergenic | 35.0% | |
| GGCATTAATCTTCTCATGAT+AGG | + | chr2.4:19889774-19889793 | MS.gene059765:intron | 35.0% | |
| GTCTAGAAGGAAAATAAAGC+TGG | + | chr2.4:19891225-19891244 | MS.gene059765:intron | 35.0% | |
| TAGATGCAATGCAACATTTG+AGG | - | chr2.4:19890825-19890844 | None:intergenic | 35.0% | |
| TCTGCAGAATTTGCATCTAT+AGG | - | chr2.4:19888737-19888756 | None:intergenic | 35.0% | |
| TGAATGTAACCGCATATTGT+TGG | - | chr2.4:19889502-19889521 | None:intergenic | 35.0% | |
| TGAGAAGAGTCAGAAATACA+AGG | + | chr2.4:19891802-19891821 | MS.gene059765:CDS | 35.0% | |
| TGTAGATGATCTCATTTCTC+GGG | + | chr2.4:19888771-19888790 | MS.gene059765:CDS | 35.0% | |
| TGTCAAAACAATACTTCCTC+CGG | - | chr2.4:19889953-19889972 | None:intergenic | 35.0% | |
| TTGATACATACAACAGAGGA+AGG | + | chr2.4:19891950-19891969 | MS.gene059765:intron | 35.0% | |
| TTTCTTATTATAAGGACCGG+AGG | + | chr2.4:19889934-19889953 | MS.gene059765:intron | 35.0% | |
| TTTGGCGATCATATAATAGC+TGG | - | chr2.4:19891114-19891133 | None:intergenic | 35.0% | |
| ! | AAGGGAAGTTTGTTCTTGAA+AGG | + | chr2.4:19891825-19891844 | MS.gene059765:CDS | 35.0% |
| ! | ACACCTTTTGGCAATGTAAA+AGG | - | chr2.4:19889122-19889141 | None:intergenic | 35.0% |
| ! | CACCTTTTGGCAATGTAAAA+GGG | - | chr2.4:19889121-19889140 | None:intergenic | 35.0% |
| ! | GATTTTGTGTGAAACCCATT+TGG | + | chr2.4:19889259-19889278 | MS.gene059765:intron | 35.0% |
| ! | GTTGTATCCATCTTTTTCTG+TGG | + | chr2.4:19890079-19890098 | MS.gene059765:intron | 35.0% |
| ! | TCATGCTGAATGCAAGTTTT+AGG | - | chr2.4:19890527-19890546 | None:intergenic | 35.0% |
| ! | TGCACAGTCTTGATTTTTCT+TGG | + | chr2.4:19890240-19890259 | MS.gene059765:intron | 35.0% |
| ! | TTCCCTTTTACATTGCCAAA+AGG | + | chr2.4:19889116-19889135 | MS.gene059765:intron | 35.0% |
| !! | CAGTCAATTTTAGTCACTGA+TGG | - | chr2.4:19890429-19890448 | None:intergenic | 35.0% |
| !! | CATTAGGCTAGTTTGTATTG+TGG | - | chr2.4:19890648-19890667 | None:intergenic | 35.0% |
| !! | TGACAATGTTGATTCCTCAA+CGG | + | chr2.4:19891978-19891997 | MS.gene059765:CDS | 35.0% |
| !!! | GTTTGTTTTTTTGTCGGGAT+GGG | + | chr2.4:19890183-19890202 | MS.gene059765:intron | 35.0% |
| !!! | TGTTTGTTTTTTTGTCGGGA+TGG | + | chr2.4:19890182-19890201 | MS.gene059765:intron | 35.0% |
| !!! | TTTTAGGTTCCTTGAGTAAC+TGG | + | chr2.4:19889848-19889867 | MS.gene059765:intron | 35.0% |
| AAACCACTACTACAGATCAC+AGG | - | chr2.4:19889009-19889028 | None:intergenic | 40.0% | |
| AACCACTACTACAGATCACA+GGG | - | chr2.4:19889008-19889027 | None:intergenic | 40.0% | |
| AAGTAGACAGTGGTTATGCT+AGG | + | chr2.4:19889703-19889722 | MS.gene059765:intron | 40.0% | |
| AGTCCTATATTTAGCGACAG+AGG | - | chr2.4:19891611-19891630 | None:intergenic | 40.0% | |
| ATGGAAAGGATGATGCTTTC+AGG | + | chr2.4:19891467-19891486 | MS.gene059765:CDS | 40.0% | |
| CAATAATCCAGCAGAGAAGT+TGG | - | chr2.4:19890296-19890315 | None:intergenic | 40.0% | |
| CAATGAAACGCCTGAAAGAA+GGG | - | chr2.4:19890343-19890362 | None:intergenic | 40.0% | |
| CCAAATCTGGCCAACTAAAT+TGG | - | chr2.4:19889360-19889379 | None:intergenic | 40.0% | |
| CCAATTTAGTTGGCCAGATT+TGG | + | chr2.4:19889357-19889376 | MS.gene059765:intron | 40.0% | |
| CCGAATAATAACATACGAGC+TGG | + | chr2.4:19890718-19890737 | MS.gene059765:intron | 40.0% | |
| CGCATGATGGTAAAAACCTT+TGG | + | chr2.4:19891190-19891209 | MS.gene059765:intron | 40.0% | |
| GTACTCACGCTTTACTGAAT+AGG | - | chr2.4:19890384-19890403 | None:intergenic | 40.0% | |
| TCTTTGATCACCCTTCTTTC+AGG | + | chr2.4:19890330-19890349 | MS.gene059765:intron | 40.0% | |
| TGATGTGACCCAACAATATG+CGG | + | chr2.4:19889490-19889509 | MS.gene059765:intron | 40.0% | |
| TGTTGCTGTGGTCAAATAGT+TGG | + | chr2.4:19891518-19891537 | MS.gene059765:CDS | 40.0% | |
| ! | CAAAATACTGATGGTTGGCT+TGG | + | chr2.4:19889578-19889597 | MS.gene059765:intron | 40.0% |
| ! | CTCTGGTGTGCTTATGTTTT+GGG | + | chr2.4:19891407-19891426 | MS.gene059765:intron | 40.0% |
| ! | TCTCTGGTGTGCTTATGTTT+TGG | + | chr2.4:19891406-19891425 | MS.gene059765:intron | 40.0% |
| ! | TGGTAAAAACCTTTGGAGGA+AGG | + | chr2.4:19891197-19891216 | MS.gene059765:intron | 40.0% |
| ! | TGTTGTATAGCACTCTAAGG+GGG | + | chr2.4:19889753-19889772 | MS.gene059765:intron | 40.0% |
| !! | GAAAGCATCATCCTTTCCAT+CGG | - | chr2.4:19891467-19891486 | None:intergenic | 40.0% |
| !!! | GATATCTTTTGCTGTTGCTG+TGG | + | chr2.4:19891506-19891525 | MS.gene059765:CDS | 40.0% |
| AGACATGTTCCTTCCTCCAA+AGG | - | chr2.4:19891209-19891228 | None:intergenic | 45.0% | |
| AGTCATGTCAGCATGAGTGA+TGG | + | chr2.4:19892015-19892034 | MS.gene059765:CDS | 45.0% | |
| ATCAAGACTGTGCATGCCTT+TGG | - | chr2.4:19890234-19890253 | None:intergenic | 45.0% | |
| ATGGGACACTAAGTAGACAG+TGG | + | chr2.4:19889693-19889712 | MS.gene059765:intron | 45.0% | |
| CAAGTTTCCAACTTCTCTGC+TGG | + | chr2.4:19890286-19890305 | MS.gene059765:intron | 45.0% | |
| CATAGTGCAGTGTTACACTG+TGG | + | chr2.4:19890778-19890797 | MS.gene059765:intron | 45.0% | |
| CCACCTCTGTCGCTAAATAT+AGG | + | chr2.4:19891605-19891624 | MS.gene059765:intron | 45.0% | |
| CCTATATTTAGCGACAGAGG+TGG | - | chr2.4:19891608-19891627 | None:intergenic | 45.0% | |
| CGAGTAAAGGAGTCTCACAT+TGG | + | chr2.4:19889176-19889195 | MS.gene059765:intron | 45.0% | |
| GAATCGAACTTGAGACCTCA+AGG | - | chr2.4:19889328-19889347 | None:intergenic | 45.0% | |
| GACACTGCCACAGAAAAAGA+TGG | - | chr2.4:19890089-19890108 | None:intergenic | 45.0% | |
| GAGGAAGGAACATGTCTAGA+AGG | + | chr2.4:19891212-19891231 | MS.gene059765:intron | 45.0% | |
| GCAATGAAACGCCTGAAAGA+AGG | - | chr2.4:19890344-19890363 | None:intergenic | 45.0% | |
| GCTGCAAGAGTCATTGACAA+TGG | + | chr2.4:19889600-19889619 | MS.gene059765:intron | 45.0% | |
| GCTTTCAGGATTGCATACTG+TGG | + | chr2.4:19891481-19891500 | MS.gene059765:CDS | 45.0% | |
| GGTTGTGCTACATCTAGTCA+TGG | + | chr2.4:19890799-19890818 | MS.gene059765:intron | 45.0% | |
| GGTTTGTCATGTGCGAGTAA+AGG | + | chr2.4:19889163-19889182 | MS.gene059765:intron | 45.0% | |
| GTCTCAAGTTCGATTCTCTC+TGG | + | chr2.4:19889332-19889351 | MS.gene059765:intron | 45.0% | |
| GTTCGATGTCTGACATGTGT+TGG | + | chr2.4:19889142-19889161 | MS.gene059765:intron | 45.0% | |
| TCATGTGCAGATTCCTGAGA+AGG | - | chr2.4:19891785-19891804 | None:intergenic | 45.0% | |
| TCTTTCAGGCGTTTCATTGC+CGG | + | chr2.4:19890344-19890363 | MS.gene059765:intron | 45.0% | |
| TGTGTGAAACCCATTTGGGT+TGG | + | chr2.4:19889264-19889283 | MS.gene059765:intron | 45.0% | |
| ! | AAGAATCTTTGTGGTGGAGC+TGG | + | chr2.4:19888702-19888721 | MS.gene059765:CDS | 45.0% |
| ! | CAGACATCGAACACACCTTT+TGG | - | chr2.4:19889134-19889153 | None:intergenic | 45.0% |
| ! | CTCTCTGGTGCCAATTTAGT+TGG | + | chr2.4:19889347-19889366 | MS.gene059765:intron | 45.0% |
| ! | TGGATGTGACTTGTGAGTGT+TGG | + | chr2.4:19889196-19889215 | MS.gene059765:intron | 45.0% |
| !! | GTTATTGGCTTCACTTCCCT+AGG | - | chr2.4:19890907-19890926 | None:intergenic | 45.0% |
| ACCACTAGGCCAACCCAAAT+GGG | - | chr2.4:19889276-19889295 | None:intergenic | 50.0% | |
| CAACTGGAACACCGATGGAA+AGG | + | chr2.4:19891453-19891472 | MS.gene059765:CDS | 50.0% | |
| CACCCTGTGATCTGTAGTAG+TGG | + | chr2.4:19889003-19889022 | MS.gene059765:intron | 50.0% | |
| CACTACTACAGATCACAGGG+TGG | - | chr2.4:19889005-19889024 | None:intergenic | 50.0% | |
| GATCCCAAGCCAATACCACT+AGG | - | chr2.4:19889290-19889309 | None:intergenic | 50.0% | |
| GCTGTGGTCAAATAGTTGGC+TGG | + | chr2.4:19891522-19891541 | MS.gene059765:CDS | 50.0% | |
| TACCACTAGGCCAACCCAAA+TGG | - | chr2.4:19889277-19889296 | None:intergenic | 50.0% | |
| ! | AATCTTTGTGGTGGAGCTGG+AGG | + | chr2.4:19888705-19888724 | MS.gene059765:CDS | 50.0% |
| ! | ATCTTTGTGGTGGAGCTGGA+GGG | + | chr2.4:19888706-19888725 | MS.gene059765:CDS | 50.0% |
| ! | TTCCATCGGTGTTCCAGTTG+TGG | - | chr2.4:19891453-19891472 | None:intergenic | 50.0% |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | + | chr2.4:19889284-19889303 | MS.gene059765:intron | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | + | chr2.4:19889283-19889302 | MS.gene059765:intron | 50.0% |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | + | chr2.4:19889278-19889297 | MS.gene059765:intron | 50.0% |
| ATAGGTATGCGTTCCCCCTC+CGG | - | chr2.4:19890366-19890385 | None:intergenic | 55.0% | |
| CACCACAACTGGAACACCGA+TGG | + | chr2.4:19891448-19891467 | MS.gene059765:CDS | 55.0% | |
| TCAGGCGTTTCATTGCCGGA+GGG | + | chr2.4:19890348-19890367 | MS.gene059765:intron | 55.0% | |
| TCCAGTGTGACCACCACAAC+TGG | + | chr2.4:19891437-19891456 | MS.gene059765:intron | 55.0% | |
| TCCAGTTGTGGTGGTCACAC+TGG | - | chr2.4:19891441-19891460 | None:intergenic | 55.0% | |
| TGCGAGTGTGCTTCTCCTTG+AGG | + | chr2.4:19889310-19889329 | MS.gene059765:intron | 55.0% | |
| TTCAGGCGTTTCATTGCCGG+AGG | + | chr2.4:19890347-19890366 | MS.gene059765:intron | 55.0% | |
| ! | CATCGGTGTTCCAGTTGTGG+TGG | - | chr2.4:19891450-19891469 | None:intergenic | 55.0% |
| !! | ACCCATTTGGGTTGGCCTAG+TGG | + | chr2.4:19889272-19889291 | MS.gene059765:intron | 55.0% |
| AGGCGTTTCATTGCCGGAGG+GGG | + | chr2.4:19890350-19890369 | MS.gene059765:intron | 60.0% | |
| CAGGCGTTTCATTGCCGGAG+GGG | + | chr2.4:19890349-19890368 | MS.gene059765:intron | 60.0% | |
| ! | TTGTGGTGGAGCTGGAGGGC+AGG | + | chr2.4:19888710-19888729 | MS.gene059765:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 19888697 | 19892050 | 19888697 | ID=MS.gene059765 |
| chr2.4 | mRNA | 19888697 | 19892050 | 19888697 | ID=MS.gene059765.t1;Parent=MS.gene059765 |
| chr2.4 | exon | 19888697 | 19888792 | 19888697 | ID=MS.gene059765.t1.exon1;Parent=MS.gene059765.t1 |
| chr2.4 | CDS | 19888697 | 19888792 | 19888697 | ID=cds.MS.gene059765.t1;Parent=MS.gene059765.t1 |
| chr2.4 | exon | 19890352 | 19890395 | 19890352 | ID=MS.gene059765.t1.exon2;Parent=MS.gene059765.t1 |
| chr2.4 | CDS | 19890352 | 19890395 | 19890352 | ID=cds.MS.gene059765.t1;Parent=MS.gene059765.t1 |
| chr2.4 | exon | 19891442 | 19891550 | 19891442 | ID=MS.gene059765.t1.exon3;Parent=MS.gene059765.t1 |
| chr2.4 | CDS | 19891442 | 19891550 | 19891442 | ID=cds.MS.gene059765.t1;Parent=MS.gene059765.t1 |
| chr2.4 | exon | 19891791 | 19891846 | 19891791 | ID=MS.gene059765.t1.exon4;Parent=MS.gene059765.t1 |
| chr2.4 | CDS | 19891791 | 19891846 | 19891791 | ID=cds.MS.gene059765.t1;Parent=MS.gene059765.t1 |
| chr2.4 | exon | 19891966 | 19892050 | 19891966 | ID=MS.gene059765.t1.exon5;Parent=MS.gene059765.t1 |
| chr2.4 | CDS | 19891966 | 19892050 | 19891966 | ID=cds.MS.gene059765.t1;Parent=MS.gene059765.t1 |
| Gene Sequence |
| Protein sequence |
