Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013601.t1 | XP_003602234.1 | 98.2 | 281 | 5 | 0 | 1 | 281 | 1 | 281 | 3.70E-150 | 540.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013601.t1 | G7J6V3 | 98.2 | 281 | 5 | 0 | 1 | 281 | 1 | 281 | 2.7e-150 | 540.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013601.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56038 | MS.gene013601 | PPI |
| MS.gene021464 | MS.gene013601 | PPI |
| MS.gene013601 | MS.gene06720 | PPI |
| MS.gene021465 | MS.gene013601 | PPI |
| MS.gene013601 | MS.gene56038 | PPI |
| MS.gene06938 | MS.gene013601 | PPI |
| MS.gene059145 | MS.gene013601 | PPI |
| MS.gene06720 | MS.gene013601 | PPI |
| MS.gene31626 | MS.gene013601 | PPI |
| MS.gene56037 | MS.gene013601 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013601.t1 | MTR_3g091340 | 98.221 | 281 | 5 | 0 | 1 | 281 | 1 | 281 | 0.0 | 571 |
| MS.gene013601.t1 | MTR_3g091340 | 98.367 | 245 | 4 | 0 | 37 | 281 | 1 | 245 | 8.78e-180 | 494 |
| MS.gene013601.t1 | MTR_3g091340 | 98.361 | 244 | 4 | 0 | 38 | 281 | 9 | 252 | 4.23e-179 | 493 |
| MS.gene013601.t1 | MTR_1g008220 | 72.028 | 286 | 70 | 5 | 1 | 280 | 1 | 282 | 6.16e-143 | 403 |
| MS.gene013601.t1 | MTR_1g008220 | 71.206 | 257 | 64 | 5 | 1 | 251 | 1 | 253 | 3.97e-124 | 354 |
| MS.gene013601.t1 | MTR_8g098725 | 49.412 | 85 | 41 | 1 | 192 | 274 | 185 | 269 | 8.23e-20 | 87.8 |
| MS.gene013601.t1 | MTR_8g098725 | 48.315 | 89 | 40 | 1 | 192 | 274 | 185 | 273 | 1.75e-18 | 84.3 |
| MS.gene013601.t1 | MTR_4g061823 | 38.519 | 135 | 67 | 4 | 152 | 274 | 59 | 189 | 4.13e-17 | 79.0 |
| MS.gene013601.t1 | MTR_4g061910 | 38.519 | 135 | 67 | 4 | 152 | 274 | 59 | 189 | 4.13e-17 | 79.0 |
| MS.gene013601.t1 | MTR_1g044785 | 40.206 | 97 | 44 | 1 | 192 | 274 | 82 | 178 | 9.80e-16 | 75.1 |
| MS.gene013601.t1 | MTR_5g010120 | 41.573 | 89 | 48 | 1 | 192 | 280 | 139 | 223 | 3.73e-15 | 73.6 |
| MS.gene013601.t1 | MTR_1g073350 | 65.306 | 49 | 17 | 0 | 226 | 274 | 312 | 360 | 4.63e-15 | 75.1 |
| MS.gene013601.t1 | MTR_2g096080 | 57.692 | 52 | 22 | 0 | 226 | 277 | 151 | 202 | 1.64e-14 | 72.0 |
| MS.gene013601.t1 | MTR_2g068730 | 58.000 | 50 | 21 | 0 | 226 | 275 | 159 | 208 | 1.47e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013601.t1 | AT5G53420 | 49.291 | 282 | 115 | 10 | 1 | 274 | 1 | 262 | 7.29e-82 | 247 |
| MS.gene013601.t1 | AT4G27900 | 49.458 | 277 | 118 | 9 | 1 | 274 | 1 | 258 | 2.43e-80 | 243 |
| MS.gene013601.t1 | AT4G27900 | 49.458 | 277 | 118 | 9 | 1 | 274 | 1 | 258 | 2.43e-80 | 243 |
| MS.gene013601.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.60e-59 | 187 |
| MS.gene013601.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.60e-59 | 187 |
| MS.gene013601.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.60e-59 | 187 |
| MS.gene013601.t1 | AT5G53420 | 41.364 | 220 | 106 | 8 | 1 | 212 | 1 | 205 | 2.45e-45 | 152 |
| MS.gene013601.t1 | AT1G63820 | 45.918 | 98 | 38 | 1 | 192 | 274 | 139 | 236 | 4.29e-19 | 85.5 |
| MS.gene013601.t1 | AT5G41380 | 47.253 | 91 | 36 | 2 | 192 | 274 | 173 | 259 | 5.31e-18 | 82.4 |
| MS.gene013601.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 284 | 332 | 4.76e-16 | 77.8 |
| MS.gene013601.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 284 | 332 | 4.76e-16 | 77.8 |
| MS.gene013601.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 275 | 323 | 5.44e-16 | 77.4 |
| MS.gene013601.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 255 | 354 | 6.43e-16 | 77.4 |
| MS.gene013601.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 244 | 343 | 8.48e-16 | 77.0 |
| MS.gene013601.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 264 | 363 | 8.74e-16 | 77.0 |
| MS.gene013601.t1 | AT2G33350 | 50.667 | 75 | 27 | 1 | 200 | 274 | 291 | 355 | 1.44e-15 | 76.6 |
| MS.gene013601.t1 | AT5G59990 | 59.091 | 44 | 18 | 0 | 237 | 280 | 170 | 213 | 7.91e-12 | 64.3 |
| MS.gene013601.t1 | AT3G12890 | 56.000 | 50 | 22 | 0 | 226 | 275 | 135 | 184 | 2.36e-11 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGACAAAGAGGAATTT+TGG | 0.219086 | 3.4:-83635438 | MS.gene013601:CDS |
| CCATTGAAGCATTGAACTTC+TGG | 0.228558 | 3.4:+83637559 | None:intergenic |
| CTCCTCACTGCTGCAGTTAC+TGG | 0.304798 | 3.4:+83635491 | None:intergenic |
| GCAGAAATGTATAGAGAAAA+TGG | 0.320082 | 3.4:-83637654 | None:intergenic |
| CTAACGCTCTTCGGTAATAA+TGG | 0.351082 | 3.4:+83635869 | None:intergenic |
| TTCGGTAATAATGGCATATC+AGG | 0.371338 | 3.4:+83635878 | None:intergenic |
| GACTCTTCAATCATCGGTTC+AGG | 0.379136 | 3.4:+83636139 | None:intergenic |
| TGTATTCTATGATTGCAAAA+AGG | 0.379871 | 3.4:-83636008 | MS.gene013601:CDS |
| GTTGGTTTCAGTATGCTTGC+AGG | 0.384533 | 3.4:-83635029 | MS.gene013601:intron |
| GCAAATCTTCCACGGACTCT+TGG | 0.408686 | 3.4:+83634985 | None:intergenic |
| CCTGCTTTCCTTGGTATCTC+AGG | 0.411336 | 3.4:-83635794 | MS.gene013601:CDS |
| GAAGTTTAAGTTCGATGGAT+TGG | 0.417320 | 3.4:-83635841 | MS.gene013601:CDS |
| CTCAGGAAGTTTAAGTTCGA+TGG | 0.421168 | 3.4:-83635846 | MS.gene013601:CDS |
| ATTTAGTGAAGGAGATATAA+AGG | 0.423299 | 3.4:-83635735 | MS.gene013601:intron |
| ACGGCCTCTCCACGGGAGAT+TGG | 0.431556 | 3.4:+83635520 | None:intergenic |
| CTTCCTGAGCTAACGCTCTT+CGG | 0.432530 | 3.4:+83635860 | None:intergenic |
| GCAATGAAGCCTGCTTTCCT+TGG | 0.445883 | 3.4:-83635803 | MS.gene013601:CDS |
| CATTGAGATGGCTGCTGTCA+TGG | 0.466318 | 3.4:+83636099 | None:intergenic |
| AAAGAATGAAGAATCTGATC+AGG | 0.470069 | 3.4:-83634962 | MS.gene013601:CDS |
| CTCTGAGATTCTAGAAATCA+AGG | 0.483324 | 3.4:-83635951 | MS.gene013601:CDS |
| CATTCTTTGCAAATCTTCCA+CGG | 0.485735 | 3.4:+83634977 | None:intergenic |
| AGTTCGATGGATTGGATGCA+TGG | 0.490181 | 3.4:-83635833 | MS.gene013601:CDS |
| TACAAAAGCTCTCTAGATAC+AGG | 0.491032 | 3.4:-83635464 | MS.gene013601:CDS |
| CCAGAAGTTCAATGCTTCAA+TGG | 0.493713 | 3.4:-83637559 | MS.gene013601:intron |
| AGAATCTGATCAGGCAAAGA+AGG | 0.498079 | 3.4:-83634953 | MS.gene013601:CDS |
| TCTATTTGAAAAGGCGGGAA+TGG | 0.501622 | 3.4:-83635984 | MS.gene013601:CDS |
| TGGCTGCTGTCATGGGATCA+AGG | 0.522632 | 3.4:+83636107 | None:intergenic |
| TTCTCGTCAATGTTCAGTAA+TGG | 0.526652 | 3.4:+83635926 | None:intergenic |
| CCTGAGATACCAAGGAAAGC+AGG | 0.532865 | 3.4:+83635794 | None:intergenic |
| ATGCCTGACTCTTCAATCAT+CGG | 0.544939 | 3.4:+83636133 | None:intergenic |
| AAGGATCTATTTGAAAAGGC+GGG | 0.547844 | 3.4:-83635989 | MS.gene013601:CDS |
| GAACCGATGATTGAAGAGTC+AGG | 0.548760 | 3.4:-83636136 | MS.gene013601:CDS |
| ATTGAGATGGCTGCTGTCAT+GGG | 0.551127 | 3.4:+83636100 | None:intergenic |
| TTACCGAAGAGCGTTAGCTC+AGG | 0.557410 | 3.4:-83635863 | MS.gene013601:CDS |
| TTCTGCTGCAAAATCATACT+CGG | 0.567600 | 3.4:+83636180 | None:intergenic |
| GTTTCAGTATGCTTGCAGGA+AGG | 0.571787 | 3.4:-83635025 | MS.gene013601:intron |
| AATAATGGCATATCAGGAAG+TGG | 0.576682 | 3.4:+83635884 | None:intergenic |
| ACAGGAACAAGAAGACAAAG+AGG | 0.587806 | 3.4:-83635446 | MS.gene013601:CDS |
| GCCACAAGATATCATTGAGA+TGG | 0.597336 | 3.4:+83636087 | None:intergenic |
| AAAGGATCTATTTGAAAAGG+CGG | 0.598414 | 3.4:-83635990 | MS.gene013601:CDS |
| GACAGTCAACCAAGAGTCCG+TGG | 0.610591 | 3.4:-83634994 | MS.gene013601:CDS |
| AATCTATTCCTGAGATACCA+AGG | 0.616072 | 3.4:+83635786 | None:intergenic |
| GCCATCTCAATGATATCTTG+TGG | 0.620490 | 3.4:-83636088 | MS.gene013601:CDS |
| TTGTCCAATCTCCCGTGGAG+AGG | 0.631289 | 3.4:-83635524 | MS.gene013601:CDS |
| TTGAAGAATAGAAATATCTG+TGG | 0.633420 | 3.4:+83636051 | None:intergenic |
| ATGCGAAGATCATTTAGTGA+AGG | 0.636958 | 3.4:-83635746 | MS.gene013601:CDS |
| GAACGTTGTCCAATCTCCCG+TGG | 0.640756 | 3.4:-83635529 | MS.gene013601:CDS |
| AATTGTGTAGATAAGACCAT+GGG | 0.640817 | 3.4:+83637622 | None:intergenic |
| ATTTCTAGAATCTCAGAGAG+CGG | 0.654213 | 3.4:+83635956 | None:intergenic |
| ACATTGCAGAAAACTGAACA+AGG | 0.668264 | 3.4:+83636203 | None:intergenic |
| AAATTGTGTAGATAAGACCA+TGG | 0.672601 | 3.4:+83637621 | None:intergenic |
| TACCAGTAACTGCAGCAGTG+AGG | 0.694981 | 3.4:-83635493 | MS.gene013601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATTGAGCATTAAA+AGG | - | chr3.4:83635397-83635416 | MS.gene013601:intron | 15.0% |
| !! | AATAAAATTGAGCATTAAAA+GGG | - | chr3.4:83635398-83635417 | MS.gene013601:intron | 15.0% |
| !! | TCAGTTTATAGTATAAATTA+TGG | - | chr3.4:83636933-83636952 | MS.gene013601:intron | 15.0% |
| !! | TTAAAAGATGTAATAAAACA+TGG | + | chr3.4:83636318-83636337 | None:intergenic | 15.0% |
| !!! | ATTTTCTATCCTTATTTTAA+AGG | + | chr3.4:83635584-83635603 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTGTGTTTG+TGG | - | chr3.4:83636348-83636367 | MS.gene013601:intron | 15.0% |
| !! | AATCATCATATGAATATCAA+CGG | + | chr3.4:83637544-83637563 | None:intergenic | 20.0% |
| !! | AATTATAGATTGTTGTAGAA+AGG | - | chr3.4:83635652-83635671 | MS.gene013601:intron | 20.0% |
| !! | ACTTTCATCATTAATTTAAC+AGG | + | chr3.4:83635695-83635714 | None:intergenic | 20.0% |
| !! | GAAACTCATAAATAAATAGA+AGG | + | chr3.4:83635465-83635484 | None:intergenic | 20.0% |
| !! | TGATATTCATATGATGATTT+GGG | - | chr3.4:83637545-83637564 | MS.gene013601:intron | 20.0% |
| !! | TGTTAAATTAATGATGAAAG+TGG | - | chr3.4:83635694-83635713 | MS.gene013601:intron | 20.0% |
| !! | TTGATATTCATATGATGATT+TGG | - | chr3.4:83637544-83637563 | MS.gene013601:intron | 20.0% |
| !!! | AATAAAAAAAGTGTAGAGAA+AGG | - | chr3.4:83635601-83635620 | MS.gene013601:intron | 20.0% |
| !!! | ATAAAAAAAGTGTAGAGAAA+GGG | - | chr3.4:83635602-83635621 | MS.gene013601:intron | 20.0% |
| !!! | TATAAGTTTTATTCCTTGTT+TGG | - | chr3.4:83635185-83635204 | MS.gene013601:intron | 20.0% |
| !!! | TTTACCAAATAACATTTTCA+AGG | + | chr3.4:83637456-83637475 | None:intergenic | 20.0% |
| !!! | TTTTTATTCATGTGAAGAAA+GGG | + | chr3.4:83637432-83637451 | None:intergenic | 20.0% |
| ! | AAAGCCTTGAAAATGTTATT+TGG | - | chr3.4:83637449-83637468 | MS.gene013601:intron | 25.0% |
| ! | AGAAGAAAAGAAAAACAAGT+AGG | + | chr3.4:83636241-83636260 | None:intergenic | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | - | chr3.4:83636861-83636880 | MS.gene013601:intron | 25.0% |
| ! | CAAAAAGGATCTATTTGAAA+AGG | - | chr3.4:83636603-83636622 | MS.gene013601:intron | 25.0% |
| ! | TAAGAAATGTGTAAATTCTC+AGG | + | chr3.4:83636116-83636135 | None:intergenic | 25.0% |
| ! | TCAAAATACTTAAACTGCAA+AGG | + | chr3.4:83635857-83635876 | None:intergenic | 25.0% |
| ! | TCATCAAAACAGAATAGAAT+AGG | + | chr3.4:83636004-83636023 | None:intergenic | 25.0% |
| ! | TGTATTCTATGATTGCAAAA+AGG | - | chr3.4:83636588-83636607 | MS.gene013601:intron | 25.0% |
| ! | TTCACATGAATAAAAAGCAA+GGG | - | chr3.4:83637236-83637255 | MS.gene013601:intron | 25.0% |
| ! | TTGAAGAATAGAAATATCTG+TGG | + | chr3.4:83636548-83636567 | None:intergenic | 25.0% |
| ! | TTTCACATGAATAAAAAGCA+AGG | - | chr3.4:83637235-83637254 | MS.gene013601:intron | 25.0% |
| !! | CTTTTTATTCATGTGAAGAA+AGG | + | chr3.4:83637433-83637452 | None:intergenic | 25.0% |
| !!! | AATATTGTTTTGTGCTTTTG+TGG | - | chr3.4:83635969-83635988 | MS.gene013601:CDS | 25.0% |
| !!! | AATTTTGAAACTTCACAGTT+TGG | - | chr3.4:83635118-83635137 | MS.gene013601:intron | 25.0% |
| !!! | ACAAACAGTTTCTACTTTTA+AGG | - | chr3.4:83636972-83636991 | MS.gene013601:intron | 25.0% |
| !!! | TTCTATCCTTATTTTAAAGG+AGG | + | chr3.4:83635581-83635600 | None:intergenic | 25.0% |
| AAAGAATGAAGAATCTGATC+AGG | - | chr3.4:83637634-83637653 | MS.gene013601:CDS | 30.0% | |
| AAAGGATCTATTTGAAAAGG+CGG | - | chr3.4:83636606-83636625 | MS.gene013601:intron | 30.0% | |
| AAATTGTGTAGATAAGACCA+TGG | + | chr3.4:83634978-83634997 | None:intergenic | 30.0% | |
| AAGAAAACATTCAGACAGAA+AGG | + | chr3.4:83635299-83635318 | None:intergenic | 30.0% | |
| AATAAAACATGGCTTATCAG+TGG | + | chr3.4:83636307-83636326 | None:intergenic | 30.0% | |
| AATGAGAGGAATAAATACCT+AGG | + | chr3.4:83637002-83637021 | None:intergenic | 30.0% | |
| AATTGTGTAGATAAGACCAT+GGG | + | chr3.4:83634977-83634996 | None:intergenic | 30.0% | |
| AGAAAAGAAAAACAAGTAGG+AGG | + | chr3.4:83636238-83636257 | None:intergenic | 30.0% | |
| AGAAGGAAGATTATACAACA+CGG | + | chr3.4:83635448-83635467 | None:intergenic | 30.0% | |
| AGGTATTTATTCCTCTCATT+CGG | - | chr3.4:83637002-83637021 | MS.gene013601:intron | 30.0% | |
| ATAAAACATGGCTTATCAGT+GGG | + | chr3.4:83636306-83636325 | None:intergenic | 30.0% | |
| ATAAATTATGGATCCTTGTG+TGG | - | chr3.4:83636945-83636964 | MS.gene013601:intron | 30.0% | |
| ATATTATCAACCACCAAACA+AGG | + | chr3.4:83635201-83635220 | None:intergenic | 30.0% | |
| CAGTACATATCAAGAAGAAA+AGG | + | chr3.4:83636057-83636076 | None:intergenic | 30.0% | |
| GTTTAGGTCATATTATAAGC+AGG | + | chr3.4:83637484-83637503 | None:intergenic | 30.0% | |
| TCACATGAATAAAAAGCAAG+GGG | - | chr3.4:83637237-83637256 | MS.gene013601:intron | 30.0% | |
| TCATTGACAATTGCAAATGA+TGG | - | chr3.4:83635717-83635736 | MS.gene013601:intron | 30.0% | |
| TCTTCTTGATATGTACTGTT+TGG | - | chr3.4:83636059-83636078 | MS.gene013601:CDS | 30.0% | |
| TGAAAAACCCATCAAAGAAA+AGG | + | chr3.4:83635086-83635105 | None:intergenic | 30.0% | |
| TTCCTTTGACCAAAATTAGA+AGG | + | chr3.4:83635784-83635803 | None:intergenic | 30.0% | |
| ! | AAGAAGACAAAGAGGAATTT+TGG | - | chr3.4:83637158-83637177 | MS.gene013601:intron | 30.0% |
| ! | ACTAATCCACCTTCTAATTT+TGG | - | chr3.4:83635772-83635791 | MS.gene013601:CDS | 30.0% |
| ! | AGATTGTTGTAGAAAGGTTT+TGG | - | chr3.4:83635658-83635677 | MS.gene013601:intron | 30.0% |
| ! | ATCTTTTCACATCCAGAAAT+CGG | - | chr3.4:83636902-83636921 | MS.gene013601:intron | 30.0% |
| ! | ATTCATATGATGATTTGGGT+TGG | - | chr3.4:83637549-83637568 | MS.gene013601:intron | 30.0% |
| ! | TATCTCACCTTTTCTTTGAT+GGG | - | chr3.4:83635076-83635095 | MS.gene013601:intron | 30.0% |
| ! | TCAAAAGTAGGTAATGGTTT+AGG | + | chr3.4:83637500-83637519 | None:intergenic | 30.0% |
| !! | AATTGCAAATGATGGTTTTG+AGG | - | chr3.4:83635725-83635744 | MS.gene013601:intron | 30.0% |
| !! | ATAGATTTTGATGCGGTTTA+TGG | - | chr3.4:83636826-83636845 | MS.gene013601:intron | 30.0% |
| !! | GAATTTTGGAAGGAAAATCA+AGG | - | chr3.4:83637172-83637191 | MS.gene013601:intron | 30.0% |
| !!! | AAGTTTTATTCCTTGTTTGG+TGG | - | chr3.4:83635188-83635207 | MS.gene013601:intron | 30.0% |
| AAAGTGTAGAGAAAGGGATT+TGG | - | chr3.4:83635608-83635627 | MS.gene013601:intron | 35.0% | |
| AACACGGAACTATCACATAA+AGG | + | chr3.4:83635432-83635451 | None:intergenic | 35.0% | |
| AAGGATCTATTTGAAAAGGC+GGG | - | chr3.4:83636607-83636626 | MS.gene013601:intron | 35.0% | |
| AATAATGGCATATCAGGAAG+TGG | + | chr3.4:83636715-83636734 | None:intergenic | 35.0% | |
| AATCTATTCCTGAGATACCA+AGG | + | chr3.4:83636813-83636832 | None:intergenic | 35.0% | |
| ACACGGAACTATCACATAAA+GGG | + | chr3.4:83635431-83635450 | None:intergenic | 35.0% | |
| ACATTGCAGAAAACTGAACA+AGG | + | chr3.4:83636396-83636415 | None:intergenic | 35.0% | |
| ATGCGAAGATCATTTAGTGA+AGG | - | chr3.4:83636850-83636869 | MS.gene013601:intron | 35.0% | |
| ATGTGTAAATTCTCAGGTCT+AGG | + | chr3.4:83636110-83636129 | None:intergenic | 35.0% | |
| ATTTATTCCTCTCATTCGGA+TGG | - | chr3.4:83637006-83637025 | MS.gene013601:intron | 35.0% | |
| CATTCTTTGCAAATCTTCCA+CGG | + | chr3.4:83637622-83637641 | None:intergenic | 35.0% | |
| CTGCAGTTACTGGTAAAAAA+CGG | + | chr3.4:83637098-83637117 | None:intergenic | 35.0% | |
| CTTTGACCAAAATTAGAAGG+TGG | + | chr3.4:83635781-83635800 | None:intergenic | 35.0% | |
| GTAGCTTCAAAAGTAGGTAA+TGG | + | chr3.4:83637506-83637525 | None:intergenic | 35.0% | |
| GTGAAGTGTGAAATCTTAGT+GGG | - | chr3.4:83635489-83635508 | MS.gene013601:CDS | 35.0% | |
| GTTGAGAAACAGTCTCTATA+TGG | - | chr3.4:83636273-83636292 | MS.gene013601:intron | 35.0% | |
| TACAAAAGCTCTCTAGATAC+AGG | - | chr3.4:83637132-83637151 | MS.gene013601:intron | 35.0% | |
| TCGTTAGTAGCTTCAAAAGT+AGG | + | chr3.4:83637512-83637531 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr3.4:83637332-83637351 | MS.gene013601:intron | 35.0% | |
| TGAAGTGTGAAATCTTAGTG+GGG | - | chr3.4:83635490-83635509 | MS.gene013601:CDS | 35.0% | |
| TGTGAAGTGTGAAATCTTAG+TGG | - | chr3.4:83635488-83635507 | MS.gene013601:CDS | 35.0% | |
| TTCGGTAATAATGGCATATC+AGG | + | chr3.4:83636721-83636740 | None:intergenic | 35.0% | |
| TTCTCGTCAATGTTCAGTAA+TGG | + | chr3.4:83636673-83636692 | None:intergenic | 35.0% | |
| TTCTGCTGCAAAATCATACT+CGG | + | chr3.4:83636419-83636438 | None:intergenic | 35.0% | |
| ! | AAAATGGTCTTCTTTTCCCA+TGG | - | chr3.4:83634958-83634977 | MS.gene013601:CDS | 35.0% |
| ! | AGACAAAGAGGAATTTTGGA+AGG | - | chr3.4:83637162-83637181 | MS.gene013601:intron | 35.0% |
| ! | CTATCTCACCTTTTCTTTGA+TGG | - | chr3.4:83635075-83635094 | MS.gene013601:intron | 35.0% |
| ! | CTGATAAAGTATCCGATTTC+TGG | + | chr3.4:83636917-83636936 | None:intergenic | 35.0% |
| ! | GAAGTTTAAGTTCGATGGAT+TGG | - | chr3.4:83636755-83636774 | MS.gene013601:intron | 35.0% |
| ! | GATTTCTGGATGTGAAAAGA+TGG | + | chr3.4:83636903-83636922 | None:intergenic | 35.0% |
| ! | TGTATCTAGAGAGCTTTTGT+AGG | + | chr3.4:83637133-83637152 | None:intergenic | 35.0% |
| !! | ATTTCTAGAATCTCAGAGAG+CGG | + | chr3.4:83636643-83636662 | None:intergenic | 35.0% |
| !! | CACCTTCTAATTTTGGTCAA+AGG | - | chr3.4:83635779-83635798 | MS.gene013601:CDS | 35.0% |
| !! | CTCAGGAATAGATTTTGATG+CGG | - | chr3.4:83636819-83636838 | MS.gene013601:intron | 35.0% |
| !! | CTCTGAGATTCTAGAAATCA+AGG | - | chr3.4:83636645-83636664 | MS.gene013601:intron | 35.0% |
| !!! | TCTACTTTTAAGGTGTTCCT+AGG | - | chr3.4:83636982-83637001 | MS.gene013601:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr3.4:83637333-83637352 | None:intergenic | 35.0% |
| !!! | TTTTTTTTGTGCTGCACTGA+GGG | - | chr3.4:83635521-83635540 | MS.gene013601:CDS | 35.0% |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr3.4:83637326-83637345 | MS.gene013601:intron | 40.0% | |
| ACAGGAACAAGAAGACAAAG+AGG | - | chr3.4:83637150-83637169 | MS.gene013601:intron | 40.0% | |
| AGAATCTGATCAGGCAAAGA+AGG | - | chr3.4:83637643-83637662 | MS.gene013601:CDS | 40.0% | |
| AGGGATTTACAAGGATGGTT+AGG | - | chr3.4:83635823-83635842 | MS.gene013601:CDS | 40.0% | |
| AGTGTAGGGATTTACAAGGA+TGG | - | chr3.4:83635818-83635837 | MS.gene013601:CDS | 40.0% | |
| ATGCCTGACTCTTCAATCAT+CGG | + | chr3.4:83636466-83636485 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr3.4:83637327-83637346 | MS.gene013601:intron | 40.0% | |
| CCAGAAGTTCAATGCTTCAA+TGG | - | chr3.4:83635037-83635056 | MS.gene013601:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr3.4:83637358-83637377 | MS.gene013601:intron | 40.0% | |
| CTAACGCTCTTCGGTAATAA+TGG | + | chr3.4:83636730-83636749 | None:intergenic | 40.0% | |
| CTTGAGTGTAGGGATTTACA+AGG | - | chr3.4:83635814-83635833 | MS.gene013601:CDS | 40.0% | |
| CTTGTAAATCCCTACACTCA+AGG | + | chr3.4:83635816-83635835 | None:intergenic | 40.0% | |
| GCCACAAGATATCATTGAGA+TGG | + | chr3.4:83636512-83636531 | None:intergenic | 40.0% | |
| GCCATCTCAATGATATCTTG+TGG | - | chr3.4:83636508-83636527 | MS.gene013601:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr3.4:83637282-83637301 | MS.gene013601:intron | 40.0% | |
| TAAAAAGCAAGGGGTAACCT+TGG | - | chr3.4:83637246-83637265 | MS.gene013601:intron | 40.0% | |
| TCTATTTGAAAAGGCGGGAA+TGG | - | chr3.4:83636612-83636631 | MS.gene013601:intron | 40.0% | |
| TCTCATAGTAGTAGCACAAG+TGG | - | chr3.4:83635322-83635341 | MS.gene013601:intron | 40.0% | |
| ! | CTCAGGAAGTTTAAGTTCGA+TGG | - | chr3.4:83636750-83636769 | MS.gene013601:intron | 40.0% |
| ! | GAGTATGATTTTGCAGCAGA+AGG | - | chr3.4:83636418-83636437 | MS.gene013601:intron | 40.0% |
| !! | CCATTGAAGCATTGAACTTC+TGG | + | chr3.4:83635040-83635059 | None:intergenic | 40.0% |
| !! | CGCTTGCCTCCTTTAAAATA+AGG | - | chr3.4:83635572-83635591 | MS.gene013601:intron | 40.0% |
| !!! | CAAATGATGGTTTTGAGGCT+AGG | - | chr3.4:83635730-83635749 | MS.gene013601:intron | 40.0% |
| !!! | CTGTTTTTGTGACAGACTCT+TGG | - | chr3.4:83637032-83637051 | MS.gene013601:intron | 40.0% |
| !!! | CTTTTTTTTGTGCTGCACTG+AGG | - | chr3.4:83635520-83635539 | MS.gene013601:CDS | 40.0% |
| ACAGAAACCATCCGAATGAG+AGG | + | chr3.4:83637016-83637035 | None:intergenic | 45.0% | |
| ACTGTTTGTGACTCCACACA+AGG | + | chr3.4:83636961-83636980 | None:intergenic | 45.0% | |
| ATTGAGATGGCTGCTGTCAT+GGG | + | chr3.4:83636499-83636518 | None:intergenic | 45.0% | |
| GAACCGATGATTGAAGAGTC+AGG | - | chr3.4:83636460-83636479 | MS.gene013601:intron | 45.0% | |
| GCACTGAGGGAAGATTAAAG+AGG | - | chr3.4:83635534-83635553 | MS.gene013601:CDS | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3.4:83637357-83637376 | MS.gene013601:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr3.4:83637354-83637373 | MS.gene013601:intron | 45.0% | |
| GTAAATCCCTACACTCAAGG+TGG | + | chr3.4:83635813-83635832 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr3.4:83637288-83637307 | MS.gene013601:intron | 45.0% | |
| GTTTCAGTATGCTTGCAGGA+AGG | - | chr3.4:83637571-83637590 | MS.gene013601:CDS | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr3.4:83637289-83637308 | MS.gene013601:intron | 45.0% | |
| ! | AGGCTAGGTCTTTGGTTTAG+TGG | - | chr3.4:83635745-83635764 | MS.gene013601:CDS | 45.0% |
| ! | GTTGGTTTCAGTATGCTTGC+AGG | - | chr3.4:83637567-83637586 | MS.gene013601:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3.4:83637322-83637341 | None:intergenic | 45.0% |
| !! | AGTTCGATGGATTGGATGCA+TGG | - | chr3.4:83636763-83636782 | MS.gene013601:intron | 45.0% |
| !! | GACTCTTCAATCATCGGTTC+AGG | + | chr3.4:83636460-83636479 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGGCTAGGTCTT+TGG | - | chr3.4:83635737-83635756 | MS.gene013601:CDS | 45.0% |
| ATCTGCGATAGTGAAGCGAC+AGG | + | chr3.4:83636197-83636216 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3.4:83637266-83637285 | None:intergenic | 50.0% | |
| CATGTGAAGAAAGGGCAACC+CGG | + | chr3.4:83637424-83637443 | None:intergenic | 50.0% | |
| CATTGAGATGGCTGCTGTCA+TGG | + | chr3.4:83636500-83636519 | None:intergenic | 50.0% | |
| CCTGAGATACCAAGGAAAGC+AGG | + | chr3.4:83636805-83636824 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGGTATCTC+AGG | - | chr3.4:83636802-83636821 | MS.gene013601:intron | 50.0% | |
| CTTCCTGAGCTAACGCTCTT+CGG | + | chr3.4:83636739-83636758 | None:intergenic | 50.0% | |
| GAGTGTCCACCTTGAGTGTA+GGG | - | chr3.4:83635804-83635823 | MS.gene013601:CDS | 50.0% | |
| GCAAATCTTCCACGGACTCT+TGG | + | chr3.4:83637614-83637633 | None:intergenic | 50.0% | |
| GCAATGAAGCCTGCTTTCCT+TGG | - | chr3.4:83636793-83636812 | MS.gene013601:intron | 50.0% | |
| GGTAAAAAACGGCCTCTCCA+CGG | + | chr3.4:83637087-83637106 | None:intergenic | 50.0% | |
| GTAAAAAACGGCCTCTCCAC+GGG | + | chr3.4:83637086-83637105 | None:intergenic | 50.0% | |
| GTAGCACAAGTGGAAACAGC+TGG | - | chr3.4:83635332-83635351 | MS.gene013601:intron | 50.0% | |
| TACCAGTAACTGCAGCAGTG+AGG | - | chr3.4:83637103-83637122 | MS.gene013601:intron | 50.0% | |
| ! | AGAGTGTCCACCTTGAGTGT+AGG | - | chr3.4:83635803-83635822 | MS.gene013601:CDS | 50.0% |
| !! | TTACCGAAGAGCGTTAGCTC+AGG | - | chr3.4:83636733-83636752 | MS.gene013601:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3.4:83637301-83637320 | MS.gene013601:intron | 55.0% | |
| CTCCTCACTGCTGCAGTTAC+TGG | + | chr3.4:83637108-83637127 | None:intergenic | 55.0% | |
| GAACGTTGTCCAATCTCCCG+TGG | - | chr3.4:83637067-83637086 | MS.gene013601:intron | 55.0% | |
| GACAGTCAACCAAGAGTCCG+TGG | - | chr3.4:83637602-83637621 | MS.gene013601:CDS | 55.0% | |
| TGGCTGCTGTCATGGGATCA+AGG | + | chr3.4:83636492-83636511 | None:intergenic | 55.0% | |
| TTGTCCAATCTCCCGTGGAG+AGG | - | chr3.4:83637072-83637091 | MS.gene013601:intron | 55.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr3.4:83637398-83637417 | None:intergenic | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr3.4:83637255-83637274 | MS.gene013601:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr3.4:83637402-83637421 | MS.gene013601:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr3.4:83637397-83637416 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr3.4:83637370-83637389 | MS.gene013601:intron | 60.0% |
| ACGGCCTCTCCACGGGAGAT+TGG | + | chr3.4:83637079-83637098 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr3.4:83637385-83637404 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3.4:83637372-83637391 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr3.4:83637385-83637404 | MS.gene013601:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr3.4:83637386-83637405 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr3.4:83637403-83637422 | MS.gene013601:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr3.4:83637386-83637405 | MS.gene013601:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr3.4:83637387-83637406 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr3.4:83637391-83637410 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr3.4:83637392-83637411 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83634948 | 83637670 | 83634948 | ID=MS.gene013601 |
| chr3.4 | mRNA | 83634948 | 83637670 | 83634948 | ID=MS.gene013601.t1;Parent=MS.gene013601 |
| chr3.4 | exon | 83637560 | 83637670 | 83637560 | ID=MS.gene013601.t1.exon1;Parent=MS.gene013601.t1 |
| chr3.4 | CDS | 83637560 | 83637670 | 83637560 | ID=cds.MS.gene013601.t1;Parent=MS.gene013601.t1 |
| chr3.4 | exon | 83635736 | 83636230 | 83635736 | ID=MS.gene013601.t1.exon2;Parent=MS.gene013601.t1 |
| chr3.4 | CDS | 83635736 | 83636230 | 83635736 | ID=cds.MS.gene013601.t1;Parent=MS.gene013601.t1 |
| chr3.4 | exon | 83635425 | 83635571 | 83635425 | ID=MS.gene013601.t1.exon3;Parent=MS.gene013601.t1 |
| chr3.4 | CDS | 83635425 | 83635571 | 83635425 | ID=cds.MS.gene013601.t1;Parent=MS.gene013601.t1 |
| chr3.4 | exon | 83634948 | 83635040 | 83634948 | ID=MS.gene013601.t1.exon4;Parent=MS.gene013601.t1 |
| chr3.4 | CDS | 83634948 | 83635040 | 83634948 | ID=cds.MS.gene013601.t1;Parent=MS.gene013601.t1 |
| Gene Sequence |
| Protein sequence |
