Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06720.t1 | XP_003602234.1 | 98.2 | 281 | 5 | 0 | 1 | 281 | 1 | 281 | 3.70E-150 | 540.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06720.t1 | G7J6V3 | 98.2 | 281 | 5 | 0 | 1 | 281 | 1 | 281 | 2.7e-150 | 540.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06720.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021464 | MS.gene06720 | PPI |
| MS.gene059145 | MS.gene06720 | PPI |
| MS.gene013601 | MS.gene06720 | PPI |
| MS.gene56037 | MS.gene06720 | PPI |
| MS.gene06720 | MS.gene56038 | PPI |
| MS.gene06938 | MS.gene06720 | PPI |
| MS.gene31626 | MS.gene06720 | PPI |
| MS.gene06720 | MS.gene013601 | PPI |
| MS.gene021465 | MS.gene06720 | PPI |
| MS.gene56038 | MS.gene06720 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06720.t1 | MTR_3g091340 | 98.221 | 281 | 5 | 0 | 1 | 281 | 1 | 281 | 0.0 | 571 |
| MS.gene06720.t1 | MTR_3g091340 | 98.367 | 245 | 4 | 0 | 37 | 281 | 1 | 245 | 8.78e-180 | 494 |
| MS.gene06720.t1 | MTR_3g091340 | 98.361 | 244 | 4 | 0 | 38 | 281 | 9 | 252 | 4.23e-179 | 493 |
| MS.gene06720.t1 | MTR_1g008220 | 72.028 | 286 | 70 | 5 | 1 | 280 | 1 | 282 | 6.16e-143 | 403 |
| MS.gene06720.t1 | MTR_1g008220 | 71.206 | 257 | 64 | 5 | 1 | 251 | 1 | 253 | 3.97e-124 | 354 |
| MS.gene06720.t1 | MTR_8g098725 | 49.412 | 85 | 41 | 1 | 192 | 274 | 185 | 269 | 8.23e-20 | 87.8 |
| MS.gene06720.t1 | MTR_8g098725 | 48.315 | 89 | 40 | 1 | 192 | 274 | 185 | 273 | 1.75e-18 | 84.3 |
| MS.gene06720.t1 | MTR_4g061823 | 38.519 | 135 | 67 | 4 | 152 | 274 | 59 | 189 | 4.13e-17 | 79.0 |
| MS.gene06720.t1 | MTR_4g061910 | 38.519 | 135 | 67 | 4 | 152 | 274 | 59 | 189 | 4.13e-17 | 79.0 |
| MS.gene06720.t1 | MTR_1g044785 | 40.206 | 97 | 44 | 1 | 192 | 274 | 82 | 178 | 9.80e-16 | 75.1 |
| MS.gene06720.t1 | MTR_5g010120 | 41.573 | 89 | 48 | 1 | 192 | 280 | 139 | 223 | 3.73e-15 | 73.6 |
| MS.gene06720.t1 | MTR_1g073350 | 65.306 | 49 | 17 | 0 | 226 | 274 | 312 | 360 | 4.63e-15 | 75.1 |
| MS.gene06720.t1 | MTR_2g096080 | 57.692 | 52 | 22 | 0 | 226 | 277 | 151 | 202 | 1.64e-14 | 72.0 |
| MS.gene06720.t1 | MTR_2g068730 | 58.000 | 50 | 21 | 0 | 226 | 275 | 159 | 208 | 1.47e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06720.t1 | AT5G53420 | 49.291 | 282 | 115 | 10 | 1 | 274 | 1 | 262 | 7.29e-82 | 247 |
| MS.gene06720.t1 | AT4G27900 | 49.458 | 277 | 118 | 9 | 1 | 274 | 1 | 258 | 2.43e-80 | 243 |
| MS.gene06720.t1 | AT4G27900 | 49.458 | 277 | 118 | 9 | 1 | 274 | 1 | 258 | 2.43e-80 | 243 |
| MS.gene06720.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.60e-59 | 187 |
| MS.gene06720.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.60e-59 | 187 |
| MS.gene06720.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.60e-59 | 187 |
| MS.gene06720.t1 | AT5G53420 | 41.364 | 220 | 106 | 8 | 1 | 212 | 1 | 205 | 2.45e-45 | 152 |
| MS.gene06720.t1 | AT1G63820 | 45.918 | 98 | 38 | 1 | 192 | 274 | 139 | 236 | 4.29e-19 | 85.5 |
| MS.gene06720.t1 | AT5G41380 | 47.253 | 91 | 36 | 2 | 192 | 274 | 173 | 259 | 5.31e-18 | 82.4 |
| MS.gene06720.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 284 | 332 | 4.76e-16 | 77.8 |
| MS.gene06720.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 284 | 332 | 4.76e-16 | 77.8 |
| MS.gene06720.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 275 | 323 | 5.44e-16 | 77.4 |
| MS.gene06720.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 255 | 354 | 6.43e-16 | 77.4 |
| MS.gene06720.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 244 | 343 | 8.48e-16 | 77.0 |
| MS.gene06720.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 264 | 363 | 8.74e-16 | 77.0 |
| MS.gene06720.t1 | AT2G33350 | 50.667 | 75 | 27 | 1 | 200 | 274 | 291 | 355 | 1.44e-15 | 76.6 |
| MS.gene06720.t1 | AT5G59990 | 59.091 | 44 | 18 | 0 | 237 | 280 | 170 | 213 | 7.91e-12 | 64.3 |
| MS.gene06720.t1 | AT3G12890 | 56.000 | 50 | 22 | 0 | 226 | 275 | 135 | 184 | 2.36e-11 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGACAAAGAGGAATTT+TGG | 0.219086 | 3.3:-76209248 | MS.gene06720:CDS |
| CCATTGAAGCATTGAACTTC+TGG | 0.228558 | 3.3:+76211378 | None:intergenic |
| CTCCTCACTGCTGCAGTTAC+TGG | 0.304798 | 3.3:+76209301 | None:intergenic |
| GCAGAAATGTATAGAGAAAA+TGG | 0.320082 | 3.3:-76211473 | None:intergenic |
| CTAACGCTCTTCGGTAATAA+TGG | 0.351082 | 3.3:+76209679 | None:intergenic |
| TTCGGTAATAATGGCATATC+AGG | 0.371338 | 3.3:+76209688 | None:intergenic |
| GACTCTTCAATCATCGGTTC+AGG | 0.379136 | 3.3:+76209949 | None:intergenic |
| TGTATTCTATGATTGCAAAA+AGG | 0.379871 | 3.3:-76209818 | MS.gene06720:CDS |
| GTTGGTTTCAGTATGCTTGC+AGG | 0.384533 | 3.3:-76208839 | MS.gene06720:intron |
| GCAAATCTTCCACGGACTCT+TGG | 0.408686 | 3.3:+76208795 | None:intergenic |
| CCTGCTTTCCTTGGTATCTC+AGG | 0.411336 | 3.3:-76209604 | MS.gene06720:CDS |
| GAAGTTTAAGTTCGATGGAT+TGG | 0.417320 | 3.3:-76209651 | MS.gene06720:CDS |
| CTCAGGAAGTTTAAGTTCGA+TGG | 0.421168 | 3.3:-76209656 | MS.gene06720:CDS |
| ATTTAGTGAAGGAGATATAA+AGG | 0.423299 | 3.3:-76209545 | MS.gene06720:intron |
| ACGGCCTCTCCACGGGAGAT+TGG | 0.431556 | 3.3:+76209330 | None:intergenic |
| CTTCCTGAGCTAACGCTCTT+CGG | 0.432530 | 3.3:+76209670 | None:intergenic |
| GCAATGAAGCCTGCTTTCCT+TGG | 0.445883 | 3.3:-76209613 | MS.gene06720:CDS |
| CATTGAGATGGCTGCTGTCA+TGG | 0.466318 | 3.3:+76209909 | None:intergenic |
| AAAGAATGAAGAATCTGATC+AGG | 0.470069 | 3.3:-76208772 | MS.gene06720:CDS |
| CTCTGAGATTCTAGAAATCA+AGG | 0.483324 | 3.3:-76209761 | MS.gene06720:CDS |
| CATTCTTTGCAAATCTTCCA+CGG | 0.485735 | 3.3:+76208787 | None:intergenic |
| AGTTCGATGGATTGGATGCA+TGG | 0.490181 | 3.3:-76209643 | MS.gene06720:CDS |
| TACAAAAGCTCTCTAGATAC+AGG | 0.491032 | 3.3:-76209274 | MS.gene06720:CDS |
| CCAGAAGTTCAATGCTTCAA+TGG | 0.493713 | 3.3:-76211378 | MS.gene06720:intron |
| AGAATCTGATCAGGCAAAGA+AGG | 0.498079 | 3.3:-76208763 | MS.gene06720:CDS |
| TCTATTTGAAAAGGCGGGAA+TGG | 0.501622 | 3.3:-76209794 | MS.gene06720:CDS |
| TGGCTGCTGTCATGGGATCA+AGG | 0.522632 | 3.3:+76209917 | None:intergenic |
| TTCTCGTCAATGTTCAGTAA+TGG | 0.526652 | 3.3:+76209736 | None:intergenic |
| CCTGAGATACCAAGGAAAGC+AGG | 0.532865 | 3.3:+76209604 | None:intergenic |
| ATGCCTGACTCTTCAATCAT+CGG | 0.544939 | 3.3:+76209943 | None:intergenic |
| AAGGATCTATTTGAAAAGGC+GGG | 0.547844 | 3.3:-76209799 | MS.gene06720:CDS |
| GAACCGATGATTGAAGAGTC+AGG | 0.548760 | 3.3:-76209946 | MS.gene06720:CDS |
| ATTGAGATGGCTGCTGTCAT+GGG | 0.551127 | 3.3:+76209910 | None:intergenic |
| TTACCGAAGAGCGTTAGCTC+AGG | 0.557410 | 3.3:-76209673 | MS.gene06720:CDS |
| TTCTGCTGCAAAATCATACT+CGG | 0.567600 | 3.3:+76209990 | None:intergenic |
| AATAATGGCATATCAGGAAG+TGG | 0.571670 | 3.3:+76209694 | None:intergenic |
| GTTTCAGTATGCTTGCAGGA+AGG | 0.571787 | 3.3:-76208835 | MS.gene06720:intron |
| ACAGGAACAAGAAGACAAAG+AGG | 0.587806 | 3.3:-76209256 | MS.gene06720:CDS |
| GCCACAAGATATCATTGAGA+TGG | 0.597336 | 3.3:+76209897 | None:intergenic |
| AAAGGATCTATTTGAAAAGG+CGG | 0.598414 | 3.3:-76209800 | MS.gene06720:CDS |
| GACAGTCAACCAAGAGTCCG+TGG | 0.610591 | 3.3:-76208804 | MS.gene06720:CDS |
| AATCTATTCCTGAGATACCA+AGG | 0.616072 | 3.3:+76209596 | None:intergenic |
| GCCATCTCAATGATATCTTG+TGG | 0.620490 | 3.3:-76209898 | MS.gene06720:CDS |
| TTGTCCAATCTCCCGTGGAG+AGG | 0.631289 | 3.3:-76209334 | MS.gene06720:CDS |
| TTGAAGAATAGAAATATCTG+TGG | 0.633420 | 3.3:+76209861 | None:intergenic |
| ATGCGAAGATCATTTAGTGA+AGG | 0.636958 | 3.3:-76209556 | MS.gene06720:CDS |
| GAACGTTGTCCAATCTCCCG+TGG | 0.640756 | 3.3:-76209339 | MS.gene06720:CDS |
| AATTGTGTAGATAAGACCAT+GGG | 0.640817 | 3.3:+76211441 | None:intergenic |
| ATTTCTAGAATCTCAGAGAG+CGG | 0.654213 | 3.3:+76209766 | None:intergenic |
| ACATTGCAGAAAACTGAACA+AGG | 0.668264 | 3.3:+76210013 | None:intergenic |
| AAATTGTGTAGATAAGACCA+TGG | 0.672601 | 3.3:+76211440 | None:intergenic |
| TACCAGTAACTGCAGCAGTG+AGG | 0.694981 | 3.3:-76209303 | MS.gene06720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATTGAGCATAAA+AGG | - | chr3.3:76209205-76209224 | MS.gene06720:intron | 15.0% |
| !! | AAATAAAATTGAGCATAAAA+GGG | - | chr3.3:76209206-76209225 | MS.gene06720:intron | 15.0% |
| !! | TCAGTTTATAGTATAAATTA+TGG | - | chr3.3:76210752-76210771 | MS.gene06720:intron | 15.0% |
| !! | TTAAAAGATGTAATAAAACA+TGG | + | chr3.3:76210138-76210157 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTGTGTTTG+TGG | - | chr3.3:76210167-76210186 | MS.gene06720:intron | 15.0% |
| !! | AATCATCATATGAATATCAA+CGG | + | chr3.3:76211363-76211382 | None:intergenic | 20.0% |
| !! | AATTATAGATTGTTGTAGAA+AGG | - | chr3.3:76209460-76209479 | MS.gene06720:intron | 20.0% |
| !! | ACTTTCATCATTAATTTAAC+AGG | + | chr3.3:76209503-76209522 | None:intergenic | 20.0% |
| !! | GAAACTCATAAATAAATAGA+AGG | + | chr3.3:76209273-76209292 | None:intergenic | 20.0% |
| !! | TATAAAGCAATAACTAACTT+AGG | + | chr3.3:76209724-76209743 | None:intergenic | 20.0% |
| !! | TGATATTCATATGATGATTT+GGG | - | chr3.3:76211364-76211383 | MS.gene06720:intron | 20.0% |
| !! | TGTTAAATTAATGATGAAAG+TGG | - | chr3.3:76209502-76209521 | MS.gene06720:intron | 20.0% |
| !! | TTGATATTCATATGATGATT+TGG | - | chr3.3:76211363-76211382 | MS.gene06720:intron | 20.0% |
| !!! | AAATAAAAAAGTGTAGAGAA+AGG | - | chr3.3:76209409-76209428 | MS.gene06720:intron | 20.0% |
| !!! | AATAAAAAAGTGTAGAGAAA+GGG | - | chr3.3:76209410-76209429 | MS.gene06720:intron | 20.0% |
| !!! | ATTTTCTCTCCTTATTTTAA+AGG | + | chr3.3:76209393-76209412 | None:intergenic | 20.0% |
| !!! | TATAAGTTTTATTCCTTGTT+TGG | - | chr3.3:76208995-76209014 | MS.gene06720:intron | 20.0% |
| !!! | TTTACCAAATAACATTTTCA+AGG | + | chr3.3:76211275-76211294 | None:intergenic | 20.0% |
| !!! | TTTTTATTCATGTGAAGAAA+GGG | + | chr3.3:76211251-76211270 | None:intergenic | 20.0% |
| ! | AAAGCCTTGAAAATGTTATT+TGG | - | chr3.3:76211268-76211287 | MS.gene06720:intron | 25.0% |
| ! | AGAAGAAAAGAAAAACAAGT+AGG | + | chr3.3:76210061-76210080 | None:intergenic | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | - | chr3.3:76210680-76210699 | MS.gene06720:intron | 25.0% |
| ! | CAAAAAGGATCTATTTGAAA+AGG | - | chr3.3:76210422-76210441 | MS.gene06720:intron | 25.0% |
| ! | TAAGAAATGTGTAAATTCTC+AGG | + | chr3.3:76209936-76209955 | None:intergenic | 25.0% |
| ! | TCAAAATACTTAAACTGCAA+AGG | + | chr3.3:76209665-76209684 | None:intergenic | 25.0% |
| ! | TCATCAAAACAGAATAGAAT+AGG | + | chr3.3:76209824-76209843 | None:intergenic | 25.0% |
| ! | TGTATTCTATGATTGCAAAA+AGG | - | chr3.3:76210407-76210426 | MS.gene06720:intron | 25.0% |
| ! | TTGAAGAATAGAAATATCTG+TGG | + | chr3.3:76210367-76210386 | None:intergenic | 25.0% |
| !! | CTTTTTATTCATGTGAAGAA+AGG | + | chr3.3:76211252-76211271 | None:intergenic | 25.0% |
| !!! | AATATTGTTTTGTGCTTTTG+TGG | - | chr3.3:76209789-76209808 | MS.gene06720:CDS | 25.0% |
| !!! | AATTTTGAAACTTCACAGTT+TGG | - | chr3.3:76208928-76208947 | MS.gene06720:intron | 25.0% |
| !!! | ACAAACAGTTTCTACTTTTA+AGG | - | chr3.3:76210791-76210810 | MS.gene06720:intron | 25.0% |
| AAAGAATGAAGAATCTGATC+AGG | - | chr3.3:76211453-76211472 | MS.gene06720:CDS | 30.0% | |
| AAAGGATCTATTTGAAAAGG+CGG | - | chr3.3:76210425-76210444 | MS.gene06720:intron | 30.0% | |
| AAATTGTGTAGATAAGACCA+TGG | + | chr3.3:76208788-76208807 | None:intergenic | 30.0% | |
| AAGAAAACATTCAGACAGAA+AGG | + | chr3.3:76209108-76209127 | None:intergenic | 30.0% | |
| AATAAAACATGGCTTATCAG+TGG | + | chr3.3:76210127-76210146 | None:intergenic | 30.0% | |
| AATGAGAGGAATAAATACCT+AGG | + | chr3.3:76210821-76210840 | None:intergenic | 30.0% | |
| AATTGTGTAGATAAGACCAT+GGG | + | chr3.3:76208787-76208806 | None:intergenic | 30.0% | |
| AGAAAAGAAAAACAAGTAGG+AGG | + | chr3.3:76210058-76210077 | None:intergenic | 30.0% | |
| AGAAGGAAGATTATACAACA+CGG | + | chr3.3:76209256-76209275 | None:intergenic | 30.0% | |
| AGCAATAACTAACTTAGGTT+AGG | + | chr3.3:76209719-76209738 | None:intergenic | 30.0% | |
| AGGTATTTATTCCTCTCATT+CGG | - | chr3.3:76210821-76210840 | MS.gene06720:intron | 30.0% | |
| ATAAAACATGGCTTATCAGT+GGG | + | chr3.3:76210126-76210145 | None:intergenic | 30.0% | |
| ATAAATTATGGATCCTTGTG+TGG | - | chr3.3:76210764-76210783 | MS.gene06720:intron | 30.0% | |
| ATATTATCAACCACCAAACA+AGG | + | chr3.3:76209011-76209030 | None:intergenic | 30.0% | |
| CAGTACATATCAAGAAGAAA+AGG | + | chr3.3:76209877-76209896 | None:intergenic | 30.0% | |
| TATCTCACCATTTCTTTGAT+GGG | - | chr3.3:76208886-76208905 | MS.gene06720:intron | 30.0% | |
| TCATTGACAATTGCAAATGA+TGG | - | chr3.3:76209525-76209544 | MS.gene06720:intron | 30.0% | |
| TCTTCTTGATATGTACTGTT+TGG | - | chr3.3:76209879-76209898 | MS.gene06720:CDS | 30.0% | |
| TGAAAAACCCATCAAAGAAA+TGG | + | chr3.3:76208896-76208915 | None:intergenic | 30.0% | |
| TTCACATGAATAAAAAGCGA+GGG | - | chr3.3:76211055-76211074 | MS.gene06720:intron | 30.0% | |
| TTCCTTTGACCAAAATTAGA+AGG | + | chr3.3:76209592-76209611 | None:intergenic | 30.0% | |
| TTTCACATGAATAAAAAGCG+AGG | - | chr3.3:76211054-76211073 | MS.gene06720:intron | 30.0% | |
| ! | AAGAAGACAAAGAGGAATTT+TGG | - | chr3.3:76210977-76210996 | MS.gene06720:intron | 30.0% |
| ! | ACTAATCCACCTTCTAATTT+TGG | - | chr3.3:76209580-76209599 | MS.gene06720:CDS | 30.0% |
| ! | ATCTTTTCACATCCAGAAAT+CGG | - | chr3.3:76210721-76210740 | MS.gene06720:intron | 30.0% |
| ! | ATTCATATGATGATTTGGGT+TGG | - | chr3.3:76211368-76211387 | MS.gene06720:intron | 30.0% |
| ! | TCAAAAGTAGGTAATGGTTT+AGG | + | chr3.3:76211319-76211338 | None:intergenic | 30.0% |
| !! | AATTGCAAATGATGGTTTTG+AGG | - | chr3.3:76209533-76209552 | MS.gene06720:intron | 30.0% |
| !! | ATAGATTTTGATGCGGTTTA+TGG | - | chr3.3:76210645-76210664 | MS.gene06720:intron | 30.0% |
| !! | GAATTTTGGAAGGAAAATCA+AGG | - | chr3.3:76210991-76211010 | MS.gene06720:intron | 30.0% |
| !!! | AAGTTTTATTCCTTGTTTGG+TGG | - | chr3.3:76208998-76209017 | MS.gene06720:intron | 30.0% |
| !!! | TTCTCTCCTTATTTTAAAGG+AGG | + | chr3.3:76209390-76209409 | None:intergenic | 30.0% |
| AAAGTGTAGAGAAAGGGATT+TGG | - | chr3.3:76209416-76209435 | MS.gene06720:intron | 35.0% | |
| AACACGGAACTATCACATAA+AGG | + | chr3.3:76209240-76209259 | None:intergenic | 35.0% | |
| AAGGATCTATTTGAAAAGGC+GGG | - | chr3.3:76210426-76210445 | MS.gene06720:intron | 35.0% | |
| AATAATGGCATATCAGGAAG+TGG | + | chr3.3:76210534-76210553 | None:intergenic | 35.0% | |
| AATCTATTCCTGAGATACCA+AGG | + | chr3.3:76210632-76210651 | None:intergenic | 35.0% | |
| ACACGGAACTATCACATAAA+GGG | + | chr3.3:76209239-76209258 | None:intergenic | 35.0% | |
| ACATTGCAGAAAACTGAACA+AGG | + | chr3.3:76210215-76210234 | None:intergenic | 35.0% | |
| ATGCGAAGATCATTTAGTGA+AGG | - | chr3.3:76210669-76210688 | MS.gene06720:intron | 35.0% | |
| ATGTGTAAATTCTCAGGTCT+AGG | + | chr3.3:76209930-76209949 | None:intergenic | 35.0% | |
| ATTTATTCCTCTCATTCGGA+TGG | - | chr3.3:76210825-76210844 | MS.gene06720:intron | 35.0% | |
| CATTCTTTGCAAATCTTCCA+CGG | + | chr3.3:76211441-76211460 | None:intergenic | 35.0% | |
| CTATCTCACCATTTCTTTGA+TGG | - | chr3.3:76208885-76208904 | MS.gene06720:intron | 35.0% | |
| CTGCAGTTACTGGTAAAAAA+CGG | + | chr3.3:76210917-76210936 | None:intergenic | 35.0% | |
| CTTTGACCAAAATTAGAAGG+TGG | + | chr3.3:76209589-76209608 | None:intergenic | 35.0% | |
| GTAGCTTCAAAAGTAGGTAA+TGG | + | chr3.3:76211325-76211344 | None:intergenic | 35.0% | |
| GTGAAGTGTGAAATCTTAGT+GGG | - | chr3.3:76209297-76209316 | MS.gene06720:CDS | 35.0% | |
| GTTGAGAAACAGTCTCTATA+TGG | - | chr3.3:76210093-76210112 | MS.gene06720:intron | 35.0% | |
| GTTTAGGTCATGTTATAAGC+AGG | + | chr3.3:76211303-76211322 | None:intergenic | 35.0% | |
| TACAAAAGCTCTCTAGATAC+AGG | - | chr3.3:76210951-76210970 | MS.gene06720:intron | 35.0% | |
| TCACATGAATAAAAAGCGAG+GGG | - | chr3.3:76211056-76211075 | MS.gene06720:intron | 35.0% | |
| TCGTTAGTAGCTTCAAAAGT+AGG | + | chr3.3:76211331-76211350 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr3.3:76211151-76211170 | MS.gene06720:intron | 35.0% | |
| TGAAGTGTGAAATCTTAGTG+GGG | - | chr3.3:76209298-76209317 | MS.gene06720:CDS | 35.0% | |
| TGTGAAGTGTGAAATCTTAG+TGG | - | chr3.3:76209296-76209315 | MS.gene06720:CDS | 35.0% | |
| TTCGGTAATAATGGCATATC+AGG | + | chr3.3:76210540-76210559 | None:intergenic | 35.0% | |
| TTCTCGTCAATGTTCAGTAA+TGG | + | chr3.3:76210492-76210511 | None:intergenic | 35.0% | |
| TTCTGCTGCAAAATCATACT+CGG | + | chr3.3:76210238-76210257 | None:intergenic | 35.0% | |
| ! | AAAATGGTCTTCTTTTCCCA+TGG | - | chr3.3:76208768-76208787 | MS.gene06720:CDS | 35.0% |
| ! | AGACAAAGAGGAATTTTGGA+AGG | - | chr3.3:76210981-76211000 | MS.gene06720:intron | 35.0% |
| ! | CTGATAAAGTATCCGATTTC+TGG | + | chr3.3:76210736-76210755 | None:intergenic | 35.0% |
| ! | GAAGTTTAAGTTCGATGGAT+TGG | - | chr3.3:76210574-76210593 | MS.gene06720:intron | 35.0% |
| ! | GATTTCTGGATGTGAAAAGA+TGG | + | chr3.3:76210722-76210741 | None:intergenic | 35.0% |
| ! | TGTATCTAGAGAGCTTTTGT+AGG | + | chr3.3:76210952-76210971 | None:intergenic | 35.0% |
| !! | ATTTCTAGAATCTCAGAGAG+CGG | + | chr3.3:76210462-76210481 | None:intergenic | 35.0% |
| !! | CACCTTCTAATTTTGGTCAA+AGG | - | chr3.3:76209587-76209606 | MS.gene06720:CDS | 35.0% |
| !! | CTCAGGAATAGATTTTGATG+CGG | - | chr3.3:76210638-76210657 | MS.gene06720:intron | 35.0% |
| !! | CTCTGAGATTCTAGAAATCA+AGG | - | chr3.3:76210464-76210483 | MS.gene06720:intron | 35.0% |
| !!! | TCTACTTTTAAGGTGTTCCT+AGG | - | chr3.3:76210801-76210820 | MS.gene06720:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr3.3:76211152-76211171 | None:intergenic | 35.0% |
| !!! | TTTTTTTTGTGCTGCACTGA+GGG | - | chr3.3:76209330-76209349 | MS.gene06720:CDS | 35.0% |
| !!! | TTTTTTTTTGTGCTGCACTG+AGG | - | chr3.3:76209329-76209348 | MS.gene06720:CDS | 35.0% |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr3.3:76211145-76211164 | MS.gene06720:intron | 40.0% | |
| ACAGGAACAAGAAGACAAAG+AGG | - | chr3.3:76210969-76210988 | MS.gene06720:intron | 40.0% | |
| AGAATCTGATCAGGCAAAGA+AGG | - | chr3.3:76211462-76211481 | MS.gene06720:CDS | 40.0% | |
| AGGGATTTACAAGGATGGTT+AGG | - | chr3.3:76209631-76209650 | MS.gene06720:CDS | 40.0% | |
| AGTGTAGGGATTTACAAGGA+TGG | - | chr3.3:76209626-76209645 | MS.gene06720:CDS | 40.0% | |
| ATGCCTGACTCTTCAATCAT+CGG | + | chr3.3:76210285-76210304 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr3.3:76211146-76211165 | MS.gene06720:intron | 40.0% | |
| CCAGAAGTTCAATGCTTCAA+TGG | - | chr3.3:76208847-76208866 | MS.gene06720:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr3.3:76211177-76211196 | MS.gene06720:intron | 40.0% | |
| CTAACGCTCTTCGGTAATAA+TGG | + | chr3.3:76210549-76210568 | None:intergenic | 40.0% | |
| CTTGAGTGTAGGGATTTACA+AGG | - | chr3.3:76209622-76209641 | MS.gene06720:CDS | 40.0% | |
| CTTGTAAATCCCTACACTCA+AGG | + | chr3.3:76209624-76209643 | None:intergenic | 40.0% | |
| GCCACAAGATATCATTGAGA+TGG | + | chr3.3:76210331-76210350 | None:intergenic | 40.0% | |
| GCCATCTCAATGATATCTTG+TGG | - | chr3.3:76210327-76210346 | MS.gene06720:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr3.3:76211101-76211120 | MS.gene06720:intron | 40.0% | |
| TCTATTTGAAAAGGCGGGAA+TGG | - | chr3.3:76210431-76210450 | MS.gene06720:intron | 40.0% | |
| TCTCATAGTAGTAGCACAAG+TGG | - | chr3.3:76209131-76209150 | MS.gene06720:intron | 40.0% | |
| ! | CTCAGGAAGTTTAAGTTCGA+TGG | - | chr3.3:76210569-76210588 | MS.gene06720:intron | 40.0% |
| ! | GAGTATGATTTTGCAGCAGA+AGG | - | chr3.3:76210237-76210256 | MS.gene06720:intron | 40.0% |
| !! | CCATTGAAGCATTGAACTTC+TGG | + | chr3.3:76208850-76208869 | None:intergenic | 40.0% |
| !! | CGCTTGCCTCCTTTAAAATA+AGG | - | chr3.3:76209381-76209400 | MS.gene06720:intron | 40.0% |
| !!! | CAAATGATGGTTTTGAGGCT+AGG | - | chr3.3:76209538-76209557 | MS.gene06720:intron | 40.0% |
| !!! | CTGTTTTTGTGACAGACTCT+TGG | - | chr3.3:76210851-76210870 | MS.gene06720:intron | 40.0% |
| !!! | TTTTTTTGTGCTGCACTGAG+GGG | - | chr3.3:76209331-76209350 | MS.gene06720:CDS | 40.0% |
| ACAGAAACCATCCGAATGAG+AGG | + | chr3.3:76210835-76210854 | None:intergenic | 45.0% | |
| ACTGTTTGTGACTCCACACA+AGG | + | chr3.3:76210780-76210799 | None:intergenic | 45.0% | |
| ATTGAGATGGCTGCTGTCAT+GGG | + | chr3.3:76210318-76210337 | None:intergenic | 45.0% | |
| GAACCGATGATTGAAGAGTC+AGG | - | chr3.3:76210279-76210298 | MS.gene06720:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3.3:76211176-76211195 | MS.gene06720:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr3.3:76211173-76211192 | MS.gene06720:intron | 45.0% | |
| GTAAATCCCTACACTCAAGG+TGG | + | chr3.3:76209621-76209640 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr3.3:76211107-76211126 | MS.gene06720:intron | 45.0% | |
| GTTTCAGTATGCTTGCAGGA+AGG | - | chr3.3:76211390-76211409 | MS.gene06720:CDS | 45.0% | |
| TAAAAAGCGAGGGGTAACCT+TGG | - | chr3.3:76211065-76211084 | MS.gene06720:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr3.3:76211108-76211127 | MS.gene06720:intron | 45.0% | |
| ! | AGGCTAGGTCTTTGGTTTAG+TGG | - | chr3.3:76209553-76209572 | MS.gene06720:CDS | 45.0% |
| ! | GTTGGTTTCAGTATGCTTGC+AGG | - | chr3.3:76211386-76211405 | MS.gene06720:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3.3:76211141-76211160 | None:intergenic | 45.0% |
| !! | AGTTCGATGGATTGGATGCA+TGG | - | chr3.3:76210582-76210601 | MS.gene06720:intron | 45.0% |
| !! | GACTCTTCAATCATCGGTTC+AGG | + | chr3.3:76210279-76210298 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGGCTAGGTCTT+TGG | - | chr3.3:76209545-76209564 | MS.gene06720:intron | 45.0% |
| ATCTGCGATAGTGAAGCGAC+AGG | + | chr3.3:76210017-76210036 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3.3:76211085-76211104 | None:intergenic | 50.0% | |
| CATGTGAAGAAAGGGCAACC+CGG | + | chr3.3:76211243-76211262 | None:intergenic | 50.0% | |
| CATTGAGATGGCTGCTGTCA+TGG | + | chr3.3:76210319-76210338 | None:intergenic | 50.0% | |
| CCTGAGATACCAAGGAAAGC+AGG | + | chr3.3:76210624-76210643 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGGTATCTC+AGG | - | chr3.3:76210621-76210640 | MS.gene06720:intron | 50.0% | |
| CTTCCTGAGCTAACGCTCTT+CGG | + | chr3.3:76210558-76210577 | None:intergenic | 50.0% | |
| GAGTGTCCACCTTGAGTGTA+GGG | - | chr3.3:76209612-76209631 | MS.gene06720:CDS | 50.0% | |
| GCAAATCTTCCACGGACTCT+TGG | + | chr3.3:76211433-76211452 | None:intergenic | 50.0% | |
| GCAATGAAGCCTGCTTTCCT+TGG | - | chr3.3:76210612-76210631 | MS.gene06720:intron | 50.0% | |
| GCACTGAGGGGAGATTAAAG+AGG | - | chr3.3:76209343-76209362 | MS.gene06720:CDS | 50.0% | |
| GGTAAAAAACGGCCTCTCCA+CGG | + | chr3.3:76210906-76210925 | None:intergenic | 50.0% | |
| GTAAAAAACGGCCTCTCCAC+GGG | + | chr3.3:76210905-76210924 | None:intergenic | 50.0% | |
| GTAGCACAAGTGGAAACAGC+TGG | - | chr3.3:76209141-76209160 | MS.gene06720:intron | 50.0% | |
| TACCAGTAACTGCAGCAGTG+AGG | - | chr3.3:76210922-76210941 | MS.gene06720:intron | 50.0% | |
| ! | AGAGTGTCCACCTTGAGTGT+AGG | - | chr3.3:76209611-76209630 | MS.gene06720:CDS | 50.0% |
| !! | TTACCGAAGAGCGTTAGCTC+AGG | - | chr3.3:76210552-76210571 | MS.gene06720:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3.3:76211120-76211139 | MS.gene06720:intron | 55.0% | |
| CTCCTCACTGCTGCAGTTAC+TGG | + | chr3.3:76210927-76210946 | None:intergenic | 55.0% | |
| GAACGTTGTCCAATCTCCCG+TGG | - | chr3.3:76210886-76210905 | MS.gene06720:intron | 55.0% | |
| GACAGTCAACCAAGAGTCCG+TGG | - | chr3.3:76211421-76211440 | MS.gene06720:CDS | 55.0% | |
| TGGCTGCTGTCATGGGATCA+AGG | + | chr3.3:76210311-76210330 | None:intergenic | 55.0% | |
| TTGTCCAATCTCCCGTGGAG+AGG | - | chr3.3:76210891-76210910 | MS.gene06720:intron | 55.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr3.3:76211217-76211236 | None:intergenic | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr3.3:76211074-76211093 | MS.gene06720:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr3.3:76211221-76211240 | MS.gene06720:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr3.3:76211216-76211235 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr3.3:76211189-76211208 | MS.gene06720:intron | 60.0% |
| ACGGCCTCTCCACGGGAGAT+TGG | + | chr3.3:76210898-76210917 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr3.3:76211204-76211223 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3.3:76211191-76211210 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr3.3:76211204-76211223 | MS.gene06720:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr3.3:76211205-76211224 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr3.3:76211222-76211241 | MS.gene06720:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr3.3:76211205-76211224 | MS.gene06720:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr3.3:76211206-76211225 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr3.3:76211210-76211229 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr3.3:76211211-76211230 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76208758 | 76211489 | 76208758 | ID=MS.gene06720 |
| chr3.3 | mRNA | 76208758 | 76211489 | 76208758 | ID=MS.gene06720.t1;Parent=MS.gene06720 |
| chr3.3 | exon | 76211379 | 76211489 | 76211379 | ID=MS.gene06720.t1.exon1;Parent=MS.gene06720.t1 |
| chr3.3 | CDS | 76211379 | 76211489 | 76211379 | ID=cds.MS.gene06720.t1;Parent=MS.gene06720.t1 |
| chr3.3 | exon | 76209546 | 76210040 | 76209546 | ID=MS.gene06720.t1.exon2;Parent=MS.gene06720.t1 |
| chr3.3 | CDS | 76209546 | 76210040 | 76209546 | ID=cds.MS.gene06720.t1;Parent=MS.gene06720.t1 |
| chr3.3 | exon | 76209235 | 76209381 | 76209235 | ID=MS.gene06720.t1.exon3;Parent=MS.gene06720.t1 |
| chr3.3 | CDS | 76209235 | 76209381 | 76209235 | ID=cds.MS.gene06720.t1;Parent=MS.gene06720.t1 |
| chr3.3 | exon | 76208758 | 76208850 | 76208758 | ID=MS.gene06720.t1.exon4;Parent=MS.gene06720.t1 |
| chr3.3 | CDS | 76208758 | 76208850 | 76208758 | ID=cds.MS.gene06720.t1;Parent=MS.gene06720.t1 |
| Gene Sequence |
| Protein sequence |
