Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31626.t1 | XP_003588527.1 | 98.4 | 247 | 4 | 0 | 3 | 249 | 36 | 282 | 1.20E-128 | 469.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31626.t1 | Q9FHH8 | 43.2 | 74 | 40 | 1 | 174 | 245 | 258 | 331 | 3.0e-06 | 53.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31626.t1 | G7I4B0 | 98.4 | 247 | 4 | 0 | 3 | 249 | 36 | 282 | 8.8e-129 | 469.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31626.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059145 | MS.gene31626 | 0.95167 | 1.25E-109 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene021465 | MS.gene31626 | PPI |
MS.gene021464 | MS.gene31626 | PPI |
MS.gene059145 | MS.gene31626 | PPI |
MS.gene31626 | MS.gene56038 | PPI |
MS.gene56037 | MS.gene31626 | PPI |
MS.gene31626 | MS.gene06720 | PPI |
MS.gene06938 | MS.gene31626 | PPI |
MS.gene31626 | MS.gene013601 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31626.t1 | MTR_1g008220 | 98.381 | 247 | 4 | 0 | 3 | 249 | 36 | 282 | 0.0 | 501 |
MS.gene31626.t1 | MTR_1g008220 | 99.083 | 218 | 2 | 0 | 3 | 220 | 36 | 253 | 2.95e-159 | 442 |
MS.gene31626.t1 | MTR_3g091340 | 74.494 | 247 | 55 | 4 | 1 | 245 | 7 | 247 | 4.94e-120 | 342 |
MS.gene31626.t1 | MTR_3g091340 | 74.286 | 245 | 55 | 4 | 3 | 245 | 2 | 240 | 1.42e-118 | 338 |
MS.gene31626.t1 | MTR_3g091340 | 74.286 | 245 | 55 | 4 | 3 | 245 | 38 | 276 | 9.20e-118 | 338 |
MS.gene31626.t1 | MTR_8g098725 | 48.235 | 85 | 42 | 1 | 161 | 243 | 185 | 269 | 3.10e-21 | 90.9 |
MS.gene31626.t1 | MTR_8g098725 | 47.191 | 89 | 41 | 2 | 161 | 243 | 185 | 273 | 1.21e-19 | 86.7 |
MS.gene31626.t1 | MTR_4g061823 | 36.691 | 139 | 71 | 4 | 119 | 244 | 56 | 190 | 2.28e-18 | 81.6 |
MS.gene31626.t1 | MTR_4g061910 | 36.691 | 139 | 71 | 4 | 119 | 244 | 56 | 190 | 2.28e-18 | 81.6 |
MS.gene31626.t1 | MTR_1g044785 | 35.172 | 145 | 76 | 4 | 117 | 244 | 36 | 179 | 2.20e-17 | 79.0 |
MS.gene31626.t1 | MTR_5g010120 | 45.882 | 85 | 42 | 1 | 161 | 245 | 139 | 219 | 2.42e-17 | 79.0 |
MS.gene31626.t1 | MTR_2g096080 | 33.813 | 139 | 76 | 4 | 121 | 247 | 69 | 203 | 1.52e-16 | 77.0 |
MS.gene31626.t1 | MTR_1g073350 | 36.296 | 135 | 69 | 4 | 126 | 244 | 228 | 361 | 1.66e-16 | 78.6 |
MS.gene31626.t1 | MTR_2g068730 | 53.061 | 49 | 23 | 0 | 195 | 243 | 159 | 207 | 1.21e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31626.t1 | AT5G53420 | 53.878 | 245 | 94 | 8 | 1 | 243 | 35 | 262 | 8.34e-79 | 238 |
MS.gene31626.t1 | AT4G27900 | 51.575 | 254 | 91 | 6 | 4 | 244 | 25 | 259 | 6.56e-76 | 231 |
MS.gene31626.t1 | AT4G27900 | 51.575 | 254 | 91 | 6 | 4 | 244 | 25 | 259 | 6.56e-76 | 231 |
MS.gene31626.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 46 | 243 | 1 | 183 | 1.32e-64 | 199 |
MS.gene31626.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 46 | 243 | 1 | 183 | 1.32e-64 | 199 |
MS.gene31626.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 46 | 243 | 1 | 183 | 1.32e-64 | 199 |
MS.gene31626.t1 | AT5G53420 | 45.763 | 177 | 82 | 6 | 1 | 175 | 35 | 199 | 2.94e-40 | 138 |
MS.gene31626.t1 | AT5G41380 | 46.316 | 95 | 45 | 2 | 156 | 244 | 166 | 260 | 5.75e-20 | 87.4 |
MS.gene31626.t1 | AT1G63820 | 41.584 | 101 | 40 | 2 | 161 | 244 | 139 | 237 | 5.25e-19 | 84.3 |
MS.gene31626.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 151 | 244 | 238 | 355 | 4.31e-17 | 80.1 |
MS.gene31626.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 151 | 244 | 227 | 344 | 5.65e-17 | 79.7 |
MS.gene31626.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 151 | 244 | 247 | 364 | 6.50e-17 | 79.7 |
MS.gene31626.t1 | AT1G04500 | 64.000 | 50 | 18 | 0 | 195 | 244 | 284 | 333 | 1.18e-16 | 79.0 |
MS.gene31626.t1 | AT1G04500 | 64.000 | 50 | 18 | 0 | 195 | 244 | 284 | 333 | 1.18e-16 | 79.0 |
MS.gene31626.t1 | AT1G04500 | 64.000 | 50 | 18 | 0 | 195 | 244 | 275 | 324 | 1.27e-16 | 78.6 |
MS.gene31626.t1 | AT2G33350 | 64.000 | 50 | 18 | 0 | 195 | 244 | 307 | 356 | 4.05e-16 | 77.4 |
MS.gene31626.t1 | AT5G59990 | 59.091 | 44 | 18 | 0 | 206 | 249 | 170 | 213 | 8.79e-12 | 63.5 |
Find 55 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTCTTCTTATTCCTATATC+TGG | 0.246824 | 1.1:+11219288 | None:intergenic |
TTCAGGAAATTTGAGTTCAA+TGG | 0.350069 | 1.1:-11219931 | MS.gene31626:CDS |
GCAAATCTTCCACGGATTCT+TGG | 0.350555 | 1.1:+11218532 | None:intergenic |
GATAATAGTACATCAGGAAT+TGG | 0.361584 | 1.1:+11219966 | None:intergenic |
CCTGCTTTCCTTGATTTCCC+TGG | 0.370726 | 1.1:-11219882 | MS.gene31626:CDS |
CCGTGGAAGATTTGCGAAAA+CGG | 0.381688 | 1.1:-11218524 | MS.gene31626:CDS |
AAGAAGACAAGGAGAAACTT+TGG | 0.387483 | 1.1:-11219274 | MS.gene31626:CDS |
CATGGTTTCAGTATGCTTGT+AGG | 0.397320 | 1.1:-11218576 | MS.gene31626:intron |
AGGAAAGCAGGCTTCATTGC+AGG | 0.402149 | 1.1:+11219894 | None:intergenic |
ACCGCGTTAAAATCAATTCC+AGG | 0.422111 | 1.1:+11219864 | None:intergenic |
GAAATTTGAGTTCAATGGAT+TGG | 0.431971 | 1.1:-11219926 | MS.gene31626:CDS |
TTATCAAAGAGTGTCAGTTC+AGG | 0.440427 | 1.1:-11219948 | MS.gene31626:CDS |
GAGCAGGAATCTTGATTTCA+AGG | 0.444374 | 1.1:+11220024 | None:intergenic |
CTCTTTGATAATAGTACATC+AGG | 0.447091 | 1.1:+11219960 | None:intergenic |
AGAAGACAAGGAGAAACTTT+GGG | 0.461172 | 1.1:-11219273 | MS.gene31626:CDS |
GTGCAGTTGCTGAGAAGAAA+AGG | 0.470162 | 1.1:+11219337 | None:intergenic |
AATCAATTCCAGGGAAATCA+AGG | 0.470610 | 1.1:+11219874 | None:intergenic |
TGGGGAAGACATGTCGTCGC+AGG | 0.471749 | 1.1:-11220168 | MS.gene31626:CDS |
ATTTAGTGAAGGAGATATAA+AGG | 0.474162 | 1.1:-11219823 | MS.gene31626:intron |
CGGTTCTTCAATAATCGTCT+CGG | 0.477444 | 1.1:+11220238 | None:intergenic |
CGAGACGATTATTGAAGAAC+CGG | 0.482715 | 1.1:-11220237 | MS.gene31626:CDS |
TGGCTGCTTGCATTTGATCA+AGG | 0.489809 | 1.1:+11220207 | None:intergenic |
GTCGCAGGGTCTAAAATCTT+CGG | 0.499847 | 1.1:-11220153 | MS.gene31626:CDS |
TTGTTTGTATAACAGACTCT+TGG | 0.509295 | 1.1:-11219400 | MS.gene31626:intron |
AGAATTTGATTTATTTGTAG+AGG | 0.514069 | 1.1:-11220279 | MS.gene31626:CDS |
TTCTCGTCAATGTTCAGAGC+AGG | 0.527138 | 1.1:+11220008 | None:intergenic |
ATTTGATCAAGGTCCATCTC+CGG | 0.536269 | 1.1:+11220218 | None:intergenic |
CCAGGGAAATCAAGGAAAGC+AGG | 0.538494 | 1.1:+11219882 | None:intergenic |
GAATTTGATTTATTTGTAGA+GGG | 0.539422 | 1.1:-11220278 | MS.gene31626:CDS |
AGTTCAATGGATTGGATGCA+TGG | 0.542974 | 1.1:-11219918 | MS.gene31626:CDS |
ATTTCAAGGATTTCAGAAAG+AGG | 0.543254 | 1.1:+11220038 | None:intergenic |
GCAGCCATGTCAATGATGTC+TGG | 0.545025 | 1.1:-11220191 | MS.gene31626:CDS |
GATTATTGAAGAACCGGAGA+TGG | 0.549985 | 1.1:-11220231 | MS.gene31626:CDS |
GGTTCTTCAATAATCGTCTC+GGG | 0.551243 | 1.1:+11220239 | None:intergenic |
CCGCGTTAAAATCAATTCCA+GGG | 0.559154 | 1.1:+11219865 | None:intergenic |
AAGGCCTCTCTAGAGTGGAT+TGG | 0.563933 | 1.1:+11219356 | None:intergenic |
AAACTTTGGGAGGAAAATCA+AGG | 0.564099 | 1.1:-11219260 | MS.gene31626:intron |
GGGGAAGACATGTCGTCGCA+GGG | 0.576526 | 1.1:-11220167 | MS.gene31626:CDS |
AAGAAAAGGCCTCTCTAGAG+TGG | 0.578670 | 1.1:+11219351 | None:intergenic |
CGGAGGAGTTAGATATCAAG+AGG | 0.594972 | 1.1:-11218504 | MS.gene31626:CDS |
CCATGTCAATGATGTCTGGT+GGG | 0.605089 | 1.1:-11220187 | MS.gene31626:CDS |
GTTTCAGTATGCTTGTAGGA+AGG | 0.605930 | 1.1:-11218572 | MS.gene31626:intron |
GTATAACAGACTCTTGGCAA+TGG | 0.606169 | 1.1:-11219394 | MS.gene31626:intron |
GACAGTCAACCAAGAATCCG+TGG | 0.616160 | 1.1:-11218541 | MS.gene31626:CDS |
GGCAATGGTAACATGAGTGT+TGG | 0.622717 | 1.1:-11219379 | MS.gene31626:CDS |
CCCACCAGACATCATTGACA+TGG | 0.626711 | 1.1:+11220187 | None:intergenic |
GCCATGTCAATGATGTCTGG+TGG | 0.631276 | 1.1:-11220188 | MS.gene31626:CDS |
GATATAGGAATAAGAAGACA+AGG | 0.632233 | 1.1:-11219285 | MS.gene31626:CDS |
ATGCGAAGAGCATTTAGTGA+AGG | 0.636958 | 1.1:-11219834 | MS.gene31626:CDS |
AGAAAGAGGTGATTCTATAG+CGG | 0.645696 | 1.1:+11220052 | None:intergenic |
TTGGCCAATCCACTCTAGAG+AGG | 0.651640 | 1.1:-11219360 | MS.gene31626:CDS |
TGGAAGATTTGCGAAAACGG+AGG | 0.654676 | 1.1:-11218521 | MS.gene31626:CDS |
ACATCGCATATGATTGAACA+AGG | 0.660417 | 1.1:+11220303 | None:intergenic |
CATGTCAATGATGTCTGGTG+GGG | 0.675165 | 1.1:-11220186 | MS.gene31626:CDS |
AGACAAGGAGAAACTTTGGG+AGG | 0.688525 | 1.1:-11219270 | MS.gene31626:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAAATTAAATAACATCTA+TGG | - | chr1.1:11219050-11219069 | MS.gene31626:intron | 10.0% |
!! | AATTTAAGAAATTAAAGTCT+TGG | + | chr1.1:11219924-11219943 | None:intergenic | 15.0% |
!! | TTAAACATTATATGTTGTAT+TGG | - | chr1.1:11219081-11219100 | MS.gene31626:intron | 15.0% |
!! | ACATATAATGTTTAACAAAG+TGG | + | chr1.1:11219076-11219095 | None:intergenic | 20.0% |
!! | TATAAATTAAGTAACATCCA+TGG | + | chr1.1:11219329-11219348 | None:intergenic | 20.0% |
!! | TTGCATCTCATTAAATATTA+AGG | - | chr1.1:11219653-11219672 | MS.gene31626:intron | 20.0% |
!!! | ACATTATTAGAATTTGAGTT+CGG | + | chr1.1:11220214-11220233 | None:intergenic | 20.0% |
!!! | AGAATTTGATTTATTTGTAG+AGG | - | chr1.1:11218533-11218552 | MS.gene31626:CDS | 20.0% |
!!! | GAATTTGATTTATTTGTAGA+GGG | - | chr1.1:11218534-11218553 | MS.gene31626:CDS | 20.0% |
!!! | TTAAATTTTTATATTGGACC+TGG | + | chr1.1:11219204-11219223 | None:intergenic | 20.0% |
! | AAAATTTCAAAAGATGTGTG+AGG | + | chr1.1:11219628-11219647 | None:intergenic | 25.0% |
! | ATTTAGTGAAGGAGATATAA+AGG | - | chr1.1:11218989-11219008 | MS.gene31626:intron | 25.0% |
! | CAAAAAAGATCTCTTAGAAA+AGG | - | chr1.1:11218737-11218756 | MS.gene31626:intron | 25.0% |
! | CAAATTCTAATAATGTTGCA+TGG | - | chr1.1:11220218-11220237 | MS.gene31626:CDS | 25.0% |
! | CTCATTAAATATTAAGGATC+CGG | - | chr1.1:11219659-11219678 | MS.gene31626:intron | 25.0% |
! | TTTGCCATATCAAAATGATT+TGG | - | chr1.1:11219376-11219395 | MS.gene31626:CDS | 25.0% |
!! | ATATAATGTCTAAGACAAAG+AGG | - | chr1.1:11219303-11219322 | MS.gene31626:CDS | 25.0% |
!! | TCTTACAAAACTAGTTTGTA+AGG | + | chr1.1:11219176-11219195 | None:intergenic | 25.0% |
!!! | ATCATTTTGATATGGCAAAT+AGG | + | chr1.1:11219375-11219394 | None:intergenic | 25.0% |
!!! | TACACCAAATCATTTTGATA+TGG | + | chr1.1:11219383-11219402 | None:intergenic | 25.0% |
AAGAAAAACTCTCCAGATAT+AGG | - | chr1.1:11219512-11219531 | MS.gene31626:intron | 30.0% | |
ATTTCAAGGATTTCAGAAAG+AGG | + | chr1.1:11218777-11218796 | None:intergenic | 30.0% | |
GACTATCTAATCCAAATCAA+TGG | + | chr1.1:11219799-11219818 | None:intergenic | 30.0% | |
GATAATAGTACATCAGGAAT+TGG | + | chr1.1:11218849-11218868 | None:intergenic | 30.0% | |
GATATAGGAATAAGAAGACA+AGG | - | chr1.1:11219527-11219546 | MS.gene31626:intron | 30.0% | |
TAAAGTCTTCTATGTTCATG+TGG | + | chr1.1:11219585-11219604 | None:intergenic | 30.0% | |
TATGTTGATGTATCTAGACT+CGG | - | chr1.1:11219224-11219243 | MS.gene31626:intron | 30.0% | |
TCAACATTATACTTCATACC+AGG | + | chr1.1:11219881-11219900 | None:intergenic | 30.0% | |
TGTCTTCTTATTCCTATATC+TGG | + | chr1.1:11219527-11219546 | None:intergenic | 30.0% | |
TTGTTTGTATAACAGACTCT+TGG | - | chr1.1:11219412-11219431 | MS.gene31626:intron | 30.0% | |
TTTGCAAATACTAATACTCC+TGG | - | chr1.1:11219860-11219879 | MS.gene31626:CDS | 30.0% | |
! | AAAACTAGTTTGTAAGGTGA+GGG | + | chr1.1:11219170-11219189 | None:intergenic | 30.0% |
! | AAGTACTTAAAAGCATGCAA+GGG | + | chr1.1:11220119-11220138 | None:intergenic | 30.0% |
! | AATCATTGCTTCAACTTTTG+AGG | - | chr1.1:11220016-11220035 | MS.gene31626:CDS | 30.0% |
! | CTCTTTGATAATAGTACATC+AGG | + | chr1.1:11218855-11218874 | None:intergenic | 30.0% |
! | GAAATTTGAGTTCAATGGAT+TGG | - | chr1.1:11218886-11218905 | MS.gene31626:intron | 30.0% |
! | GGAGTATTAGTATTTGCAAA+TGG | + | chr1.1:11219860-11219879 | None:intergenic | 30.0% |
! | TTCAGGAAATTTGAGTTCAA+TGG | - | chr1.1:11218881-11218900 | MS.gene31626:intron | 30.0% |
!! | ATTGATTTTAACGCGGTTTA+TGG | - | chr1.1:11218954-11218973 | MS.gene31626:intron | 30.0% |
AAGAAGACAAGGAGAAACTT+TGG | - | chr1.1:11219538-11219557 | MS.gene31626:intron | 35.0% | |
AATCAATTCCAGGGAAATCA+AGG | + | chr1.1:11218941-11218960 | None:intergenic | 35.0% | |
AATTTGAAAGCTGACAGCAT+AGG | - | chr1.1:11219737-11219756 | MS.gene31626:intron | 35.0% | |
ACATCGCATATGATTGAACA+AGG | + | chr1.1:11218512-11218531 | None:intergenic | 35.0% | |
AGAAAGAGGTGATTCTATAG+CGG | + | chr1.1:11218763-11218782 | None:intergenic | 35.0% | |
AGAAGACAAGGAGAAACTTT+GGG | - | chr1.1:11219539-11219558 | MS.gene31626:intron | 35.0% | |
ATACTTGCTTCTCTTACATC+AGG | + | chr1.1:11219689-11219708 | None:intergenic | 35.0% | |
ATGTTGATGTATCTAGACTC+GGG | - | chr1.1:11219225-11219244 | MS.gene31626:intron | 35.0% | |
GCTGTCAGCTTTCAAATTAA+TGG | + | chr1.1:11219735-11219754 | None:intergenic | 35.0% | |
TACTTGCTTCTCTTACATCA+GGG | + | chr1.1:11219688-11219707 | None:intergenic | 35.0% | |
TGCATAATGCAGTTATTGCA+GGG | - | chr1.1:11219831-11219850 | MS.gene31626:CDS | 35.0% | |
! | AAACTAGTTTGTAAGGTGAG+GGG | + | chr1.1:11219169-11219188 | None:intergenic | 35.0% |
! | AAACTTTGGGAGGAAAATCA+AGG | - | chr1.1:11219552-11219571 | MS.gene31626:intron | 35.0% |
! | AACAAACTCGTCCATTGATT+TGG | - | chr1.1:11219785-11219804 | MS.gene31626:intron | 35.0% |
! | CAAAACTAGTTTGTAAGGTG+AGG | + | chr1.1:11219171-11219190 | None:intergenic | 35.0% |
! | GAAGTACTTAAAAGCATGCA+AGG | + | chr1.1:11220120-11220139 | None:intergenic | 35.0% |
! | TTAAAAGCATGCAAGGGATT+AGG | + | chr1.1:11220113-11220132 | None:intergenic | 35.0% |
! | TTGGATTAGATAGTCGAGAT+CGG | - | chr1.1:11219804-11219823 | MS.gene31626:intron | 35.0% |
!! | TTATCAAAGAGTGTCAGTTC+AGG | - | chr1.1:11218864-11218883 | MS.gene31626:intron | 35.0% |
!!! | TAGTTTTGTAAGAATGAGCC+AGG | - | chr1.1:11219183-11219202 | MS.gene31626:intron | 35.0% |
ACCGCGTTAAAATCAATTCC+AGG | + | chr1.1:11218951-11218970 | None:intergenic | 40.0% | |
AGACACTTAGCTACTCATTG+AGG | + | chr1.1:11219987-11220006 | None:intergenic | 40.0% | |
ATCGTGTCAAAGGCTGAAAA+TGG | + | chr1.1:11220190-11220209 | None:intergenic | 40.0% | |
ATTTGATCAAGGTCCATCTC+CGG | + | chr1.1:11218597-11218616 | None:intergenic | 40.0% | |
CATGGTTTCAGTATGCTTGT+AGG | - | chr1.1:11220236-11220255 | MS.gene31626:CDS | 40.0% | |
CCGCGTTAAAATCAATTCCA+GGG | + | chr1.1:11218950-11218969 | None:intergenic | 40.0% | |
CGAGACGATTATTGAAGAAC+CGG | - | chr1.1:11218575-11218594 | MS.gene31626:intron | 40.0% | |
CGGTTCTTCAATAATCGTCT+CGG | + | chr1.1:11218577-11218596 | None:intergenic | 40.0% | |
CGTTGAGAAGAGATAAGACT+TGG | - | chr1.1:11219121-11219140 | MS.gene31626:intron | 40.0% | |
CTGCATAATGCAGTTATTGC+AGG | - | chr1.1:11219830-11219849 | MS.gene31626:CDS | 40.0% | |
GAAAAACTGCATCAGTAGCA+AGG | - | chr1.1:11220087-11220106 | MS.gene31626:CDS | 40.0% | |
GAGCAGGAATCTTGATTTCA+AGG | + | chr1.1:11218791-11218810 | None:intergenic | 40.0% | |
GATTATTGAAGAACCGGAGA+TGG | - | chr1.1:11218581-11218600 | MS.gene31626:intron | 40.0% | |
GGTTCTTCAATAATCGTCTC+GGG | + | chr1.1:11218576-11218595 | None:intergenic | 40.0% | |
GTATAACAGACTCTTGGCAA+TGG | - | chr1.1:11219418-11219437 | MS.gene31626:intron | 40.0% | |
GTCTTATCTCTTCTCAACGT+GGG | + | chr1.1:11219120-11219139 | None:intergenic | 40.0% | |
GTTTCAGTATGCTTGTAGGA+AGG | - | chr1.1:11220240-11220259 | MS.gene31626:CDS | 40.0% | |
TTCTCTTACATCAGGGAATC+CGG | + | chr1.1:11219681-11219700 | None:intergenic | 40.0% | |
! | AGTCTTATCTCTTCTCAACG+TGG | + | chr1.1:11219121-11219140 | None:intergenic | 40.0% |
!! | AAGCGAACAACTTTTGAGTG+AGG | - | chr1.1:11218701-11218720 | MS.gene31626:intron | 40.0% |
!! | AGTTCAATGGATTGGATGCA+TGG | - | chr1.1:11218894-11218913 | MS.gene31626:intron | 40.0% |
!! | ATGCGAAGAGCATTTAGTGA+AGG | - | chr1.1:11218978-11218997 | MS.gene31626:intron | 40.0% |
!! | CCCTGGAATTGATTTTAACG+CGG | - | chr1.1:11218947-11218966 | MS.gene31626:intron | 40.0% |
AGACAAGGAGAAACTTTGGG+AGG | - | chr1.1:11219542-11219561 | MS.gene31626:intron | 45.0% | |
CATGTCAATGATGTCTGGTG+GGG | - | chr1.1:11218626-11218645 | MS.gene31626:intron | 45.0% | |
CCATGTCAATGATGTCTGGT+GGG | - | chr1.1:11218625-11218644 | MS.gene31626:intron | 45.0% | |
CCGTGGAAGATTTGCGAAAA+CGG | - | chr1.1:11220288-11220307 | MS.gene31626:CDS | 45.0% | |
CGGAGGAGTTAGATATCAAG+AGG | - | chr1.1:11220308-11220327 | MS.gene31626:CDS | 45.0% | |
GCAAATCTTCCACGGATTCT+TGG | + | chr1.1:11220283-11220302 | None:intergenic | 45.0% | |
GGCAATGGTAACATGAGTGT+TGG | - | chr1.1:11219433-11219452 | MS.gene31626:intron | 45.0% | |
GTGCAGTTGCTGAGAAGAAA+AGG | + | chr1.1:11219478-11219497 | None:intergenic | 45.0% | |
TGAGTTCGGAATCGTGTCAA+AGG | + | chr1.1:11220200-11220219 | None:intergenic | 45.0% | |
TGGAAGATTTGCGAAAACGG+AGG | - | chr1.1:11220291-11220310 | MS.gene31626:CDS | 45.0% | |
TGGCTGCTTGCATTTGATCA+AGG | + | chr1.1:11218608-11218627 | None:intergenic | 45.0% | |
TTCTCGTCAATGTTCAGAGC+AGG | + | chr1.1:11218807-11218826 | None:intergenic | 45.0% | |
! | AAGAAAAGGCCTCTCTAGAG+TGG | + | chr1.1:11219464-11219483 | None:intergenic | 45.0% |
! | CCGTTTTCGCAAATCTTCCA+CGG | + | chr1.1:11220291-11220310 | None:intergenic | 45.0% |
! | GTCGCAGGGTCTAAAATCTT+CGG | - | chr1.1:11218659-11218678 | MS.gene31626:intron | 45.0% |
! | TGTCTAAGACAAAGAGGCCA+TGG | - | chr1.1:11219309-11219328 | MS.gene31626:CDS | 45.0% |
!!! | AACATATTAAATTTTTATAT+TGG | + | chr1.1:11219210-11219229 | None:intergenic | 5.0% |
AGGAAAGCAGGCTTCATTGC+AGG | + | chr1.1:11218921-11218940 | None:intergenic | 50.0% | |
CCAGGGAAATCAAGGAAAGC+AGG | + | chr1.1:11218933-11218952 | None:intergenic | 50.0% | |
CCCACCAGACATCATTGACA+TGG | + | chr1.1:11218628-11218647 | None:intergenic | 50.0% | |
CCTGCTTTCCTTGATTTCCC+TGG | - | chr1.1:11218930-11218949 | MS.gene31626:intron | 50.0% | |
GACAGTCAACCAAGAATCCG+TGG | - | chr1.1:11220271-11220290 | MS.gene31626:CDS | 50.0% | |
GCAGCCATGTCAATGATGTC+TGG | - | chr1.1:11218621-11218640 | MS.gene31626:intron | 50.0% | |
GCCATGTCAATGATGTCTGG+TGG | - | chr1.1:11218624-11218643 | MS.gene31626:intron | 50.0% | |
! | TTGGCCAATCCACTCTAGAG+AGG | - | chr1.1:11219452-11219471 | MS.gene31626:intron | 50.0% |
!! | AAGGCCTCTCTAGAGTGGAT+TGG | + | chr1.1:11219459-11219478 | None:intergenic | 50.0% |
GTCCTCTTTAGCGCTGCACA+CGG | - | chr1.1:11219247-11219266 | MS.gene31626:intron | 55.0% | |
TTAGCGCTGCACACGGTGAA+CGG | - | chr1.1:11219254-11219273 | MS.gene31626:intron | 55.0% | |
CACCGTGTGCAGCGCTAAAG+AGG | + | chr1.1:11219252-11219271 | None:intergenic | 60.0% | |
GGGGAAGACATGTCGTCGCA+GGG | - | chr1.1:11218645-11218664 | MS.gene31626:intron | 60.0% | |
TGGGGAAGACATGTCGTCGC+AGG | - | chr1.1:11218644-11218663 | MS.gene31626:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 11218498 | 11220336 | 11218498 | ID=MS.gene31626 |
chr1.1 | mRNA | 11218498 | 11220336 | 11218498 | ID=MS.gene31626.t1;Parent=MS.gene31626 |
chr1.1 | exon | 11219824 | 11220336 | 11219824 | ID=MS.gene31626.t1.exon1;Parent=MS.gene31626.t1 |
chr1.1 | CDS | 11219824 | 11220336 | 11219824 | ID=cds.MS.gene31626.t1;Parent=MS.gene31626.t1 |
chr1.1 | exon | 11219261 | 11219407 | 11219261 | ID=MS.gene31626.t1.exon2;Parent=MS.gene31626.t1 |
chr1.1 | CDS | 11219261 | 11219407 | 11219261 | ID=cds.MS.gene31626.t1;Parent=MS.gene31626.t1 |
chr1.1 | exon | 11218498 | 11218587 | 11218498 | ID=MS.gene31626.t1.exon3;Parent=MS.gene31626.t1 |
chr1.1 | CDS | 11218498 | 11218587 | 11218498 | ID=cds.MS.gene31626.t1;Parent=MS.gene31626.t1 |
Gene Sequence |
Protein sequence |