Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06938.t1 | XP_003602234.1 | 97.9 | 281 | 6 | 0 | 1 | 281 | 1 | 281 | 1.10E-149 | 539.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06938.t1 | G7J6V3 | 97.9 | 281 | 6 | 0 | 1 | 281 | 1 | 281 | 7.8e-150 | 539.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06938.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059145 | MS.gene06938 | PPI |
| MS.gene56037 | MS.gene06938 | PPI |
| MS.gene06938 | MS.gene021465 | PPI |
| MS.gene06938 | MS.gene56038 | PPI |
| MS.gene06938 | MS.gene06720 | PPI |
| MS.gene06938 | MS.gene31626 | PPI |
| MS.gene06938 | MS.gene013601 | PPI |
| MS.gene021464 | MS.gene06938 | PPI |
| MS.gene06938 | MS.gene059145 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06938.t1 | MTR_3g091340 | 97.865 | 281 | 6 | 0 | 1 | 281 | 1 | 281 | 0.0 | 570 |
| MS.gene06938.t1 | MTR_3g091340 | 97.959 | 245 | 5 | 0 | 37 | 281 | 1 | 245 | 2.41e-179 | 493 |
| MS.gene06938.t1 | MTR_3g091340 | 97.951 | 244 | 5 | 0 | 38 | 281 | 9 | 252 | 1.21e-178 | 492 |
| MS.gene06938.t1 | MTR_1g008220 | 71.678 | 286 | 71 | 5 | 1 | 280 | 1 | 282 | 1.21e-142 | 402 |
| MS.gene06938.t1 | MTR_1g008220 | 70.817 | 257 | 65 | 5 | 1 | 251 | 1 | 253 | 1.15e-123 | 353 |
| MS.gene06938.t1 | MTR_8g098725 | 49.412 | 85 | 41 | 1 | 192 | 274 | 185 | 269 | 8.15e-20 | 87.8 |
| MS.gene06938.t1 | MTR_8g098725 | 48.315 | 89 | 40 | 1 | 192 | 274 | 185 | 273 | 1.80e-18 | 84.0 |
| MS.gene06938.t1 | MTR_4g061823 | 38.519 | 135 | 67 | 4 | 152 | 274 | 59 | 189 | 4.39e-17 | 79.0 |
| MS.gene06938.t1 | MTR_4g061910 | 38.519 | 135 | 67 | 4 | 152 | 274 | 59 | 189 | 4.39e-17 | 79.0 |
| MS.gene06938.t1 | MTR_1g044785 | 40.206 | 97 | 44 | 1 | 192 | 274 | 82 | 178 | 1.05e-15 | 74.7 |
| MS.gene06938.t1 | MTR_5g010120 | 41.573 | 89 | 48 | 1 | 192 | 280 | 139 | 223 | 3.80e-15 | 73.6 |
| MS.gene06938.t1 | MTR_1g073350 | 65.306 | 49 | 17 | 0 | 226 | 274 | 312 | 360 | 4.76e-15 | 75.1 |
| MS.gene06938.t1 | MTR_2g096080 | 57.692 | 52 | 22 | 0 | 226 | 277 | 151 | 202 | 1.66e-14 | 72.0 |
| MS.gene06938.t1 | MTR_2g068730 | 58.000 | 50 | 21 | 0 | 226 | 275 | 159 | 208 | 1.50e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06938.t1 | AT5G53420 | 49.645 | 282 | 114 | 10 | 1 | 274 | 1 | 262 | 2.11e-82 | 249 |
| MS.gene06938.t1 | AT4G27900 | 49.819 | 277 | 117 | 9 | 1 | 274 | 1 | 258 | 8.93e-81 | 244 |
| MS.gene06938.t1 | AT4G27900 | 49.819 | 277 | 117 | 9 | 1 | 274 | 1 | 258 | 8.93e-81 | 244 |
| MS.gene06938.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.54e-59 | 187 |
| MS.gene06938.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.54e-59 | 187 |
| MS.gene06938.t1 | AT5G53420 | 54.229 | 201 | 67 | 8 | 81 | 274 | 1 | 183 | 1.54e-59 | 187 |
| MS.gene06938.t1 | AT5G53420 | 41.818 | 220 | 105 | 8 | 1 | 212 | 1 | 205 | 6.73e-46 | 153 |
| MS.gene06938.t1 | AT1G63820 | 45.918 | 98 | 38 | 1 | 192 | 274 | 139 | 236 | 4.47e-19 | 85.5 |
| MS.gene06938.t1 | AT5G41380 | 47.253 | 91 | 36 | 2 | 192 | 274 | 173 | 259 | 5.36e-18 | 82.4 |
| MS.gene06938.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 284 | 332 | 4.80e-16 | 77.8 |
| MS.gene06938.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 284 | 332 | 4.80e-16 | 77.8 |
| MS.gene06938.t1 | AT1G04500 | 67.347 | 49 | 16 | 0 | 226 | 274 | 275 | 323 | 5.49e-16 | 77.4 |
| MS.gene06938.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 255 | 354 | 6.55e-16 | 77.4 |
| MS.gene06938.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 244 | 343 | 8.48e-16 | 77.0 |
| MS.gene06938.t1 | AT2G33350 | 41.000 | 100 | 42 | 2 | 192 | 274 | 264 | 363 | 8.82e-16 | 77.0 |
| MS.gene06938.t1 | AT2G33350 | 50.667 | 75 | 27 | 1 | 200 | 274 | 291 | 355 | 1.44e-15 | 76.6 |
| MS.gene06938.t1 | AT5G59990 | 59.091 | 44 | 18 | 0 | 237 | 280 | 170 | 213 | 7.75e-12 | 64.3 |
| MS.gene06938.t1 | AT3G12890 | 56.000 | 50 | 22 | 0 | 226 | 275 | 135 | 184 | 2.36e-11 | 62.8 |
Find 51 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGACAAAGAGGAATTT+TGG | 0.219086 | 3.1:-73292227 | MS.gene06938:CDS |
| CCATTGAAGCATTGAACTTC+TGG | 0.228558 | 3.1:+73294333 | None:intergenic |
| CTCCTCACTGCTGCAGTTAC+TGG | 0.304798 | 3.1:+73292280 | None:intergenic |
| GCAGAAATGTATAGAGAAAA+TGG | 0.320082 | 3.1:-73294428 | None:intergenic |
| CTAACGCTCTTCGGTAATAA+TGG | 0.351082 | 3.1:+73292634 | None:intergenic |
| TTCGGTAATAATGGCATATC+AGG | 0.371338 | 3.1:+73292643 | None:intergenic |
| GACTCTTCAATCATCGGTTC+AGG | 0.379136 | 3.1:+73292904 | None:intergenic |
| TGTATTCTATGATTGCAAAA+AGG | 0.379871 | 3.1:-73292773 | MS.gene06938:CDS |
| GTTGGTTTCAGTATGCTTGC+AGG | 0.384533 | 3.1:-73291818 | MS.gene06938:intron |
| GCAAATCTTCCACGGACTCT+TGG | 0.408686 | 3.1:+73291774 | None:intergenic |
| CCTGCTTTCCTTGGTATCTC+AGG | 0.411336 | 3.1:-73292559 | MS.gene06938:CDS |
| GAAGTTTAAGTTCGATGGAT+TGG | 0.417320 | 3.1:-73292606 | MS.gene06938:CDS |
| CTCAGGAAGTTTAAGTTCGA+TGG | 0.421168 | 3.1:-73292611 | MS.gene06938:CDS |
| ATTTAGTGAAGGAGATATAA+AGG | 0.423299 | 3.1:-73292500 | MS.gene06938:intron |
| CTTCCTGAGCTAACGCTCTT+CGG | 0.432530 | 3.1:+73292625 | None:intergenic |
| ACGGCCTCTCCACCGGAGAT+TGG | 0.433914 | 3.1:+73292309 | None:intergenic |
| GCAATGAAGCCTGCTTTCCT+TGG | 0.445883 | 3.1:-73292568 | MS.gene06938:CDS |
| CATTGAGATGGCTGCTGTCA+TGG | 0.466318 | 3.1:+73292864 | None:intergenic |
| AAAGAATGAAGAATCTGATC+AGG | 0.470069 | 3.1:-73291751 | MS.gene06938:CDS |
| AAGGATCTATTTGAAAAGGC+TGG | 0.477472 | 3.1:-73292754 | MS.gene06938:CDS |
| CTCTGAGATTCTAGAAATCA+AGG | 0.483324 | 3.1:-73292716 | MS.gene06938:CDS |
| CATTCTTTGCAAATCTTCCA+CGG | 0.485735 | 3.1:+73291766 | None:intergenic |
| AGTTCGATGGATTGGATGCA+TGG | 0.490181 | 3.1:-73292598 | MS.gene06938:CDS |
| TACAAAAGCTCTCTAGATAC+AGG | 0.491032 | 3.1:-73292253 | MS.gene06938:CDS |
| CCAGAAGTTCAATGCTTCAA+TGG | 0.493713 | 3.1:-73294333 | MS.gene06938:intron |
| AGAATCTGATCAGGCAAAGA+AGG | 0.498079 | 3.1:-73291742 | MS.gene06938:CDS |
| TCTATTTGAAAAGGCTGGAA+TGG | 0.508519 | 3.1:-73292749 | MS.gene06938:CDS |
| TTCTCGTCAATGTTCAGTAA+TGG | 0.526652 | 3.1:+73292691 | None:intergenic |
| CCTGAGATACCAAGGAAAGC+AGG | 0.532865 | 3.1:+73292559 | None:intergenic |
| TATGAACGTTGTCCAATCTC+CGG | 0.544805 | 3.1:-73292321 | MS.gene06938:CDS |
| ATGCCTGACTCTTCAATCAT+CGG | 0.544939 | 3.1:+73292898 | None:intergenic |
| GAACCGATGATTGAAGAGTC+AGG | 0.548760 | 3.1:-73292901 | MS.gene06938:CDS |
| ATTGAGATGGCTGCTGTCAT+GGG | 0.551127 | 3.1:+73292865 | None:intergenic |
| TTACCGAAGAGCGTTAGCTC+AGG | 0.557410 | 3.1:-73292628 | MS.gene06938:CDS |
| TTCTGCTGCAAAATCATACT+CGG | 0.567600 | 3.1:+73292945 | None:intergenic |
| GTTTCAGTATGCTTGCAGGA+AGG | 0.571787 | 3.1:-73291814 | MS.gene06938:intron |
| AATAATGGCATATCAGGAAG+TGG | 0.576682 | 3.1:+73292649 | None:intergenic |
| ACAGGAACAAGAAGACAAAG+AGG | 0.587806 | 3.1:-73292235 | MS.gene06938:CDS |
| GCCACAAGATATCATTGAGA+TGG | 0.597336 | 3.1:+73292852 | None:intergenic |
| TTGTCCAATCTCCGGTGGAG+AGG | 0.609645 | 3.1:-73292313 | MS.gene06938:CDS |
| GACAGTCAACCAAGAGTCCG+TGG | 0.610591 | 3.1:-73291783 | MS.gene06938:CDS |
| AATCTATTCCTGAGATACCA+AGG | 0.616072 | 3.1:+73292551 | None:intergenic |
| GCCATCTCAATGATATCTTG+TGG | 0.620490 | 3.1:-73292853 | MS.gene06938:CDS |
| TTGAAGAATAGAAATATCTG+TGG | 0.633420 | 3.1:+73292816 | None:intergenic |
| ATGCGAAGATCATTTAGTGA+AGG | 0.636958 | 3.1:-73292511 | MS.gene06938:CDS |
| GAACGTTGTCCAATCTCCGG+TGG | 0.640756 | 3.1:-73292318 | MS.gene06938:CDS |
| AATTGTGTAGATAAGACCAT+GGG | 0.640817 | 3.1:+73294396 | None:intergenic |
| ATTTCTAGAATCTCAGAGAG+CGG | 0.654213 | 3.1:+73292721 | None:intergenic |
| ACATTGCAGAAAACTGAACA+AGG | 0.668264 | 3.1:+73292968 | None:intergenic |
| AAATTGTGTAGATAAGACCA+TGG | 0.672601 | 3.1:+73294395 | None:intergenic |
| TACCAGTAACTGCAGCAGTG+AGG | 0.694981 | 3.1:-73292282 | MS.gene06938:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATTGAGCATAAA+AGG | - | chr3.1:73292184-73292203 | MS.gene06938:intron | 15.0% |
| !! | AAATAAAATTGAGCATAAAA+GGG | - | chr3.1:73292185-73292204 | MS.gene06938:intron | 15.0% |
| !! | TCAGTTTATAGTATAAATTA+TGG | - | chr3.1:73293731-73293750 | MS.gene06938:intron | 15.0% |
| !! | TTAAAAGATGTAATAAAACA+TGG | + | chr3.1:73293110-73293129 | None:intergenic | 15.0% |
| !!! | ATTTTCTATCCTTATTTTAA+AGG | + | chr3.1:73292372-73292391 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTGTGTTTG+TGG | - | chr3.1:73293146-73293165 | MS.gene06938:intron | 15.0% |
| !! | AATCATCATATGAATATCAA+CGG | + | chr3.1:73294318-73294337 | None:intergenic | 20.0% |
| !! | AATTATAGATTGTTGTAGAA+AGG | - | chr3.1:73292439-73292458 | MS.gene06938:intron | 20.0% |
| !! | ACTTTCATCATTAATTTAAC+AGG | + | chr3.1:73292482-73292501 | None:intergenic | 20.0% |
| !! | GAAACTCATAAATAAATAGA+AGG | + | chr3.1:73292252-73292271 | None:intergenic | 20.0% |
| !! | TGATATTCATATGATGATTT+GGG | - | chr3.1:73294319-73294338 | MS.gene06938:intron | 20.0% |
| !! | TGTTAAATTAATGATGAAAG+TGG | - | chr3.1:73292481-73292500 | MS.gene06938:intron | 20.0% |
| !! | TTGATATTCATATGATGATT+TGG | - | chr3.1:73294318-73294337 | MS.gene06938:intron | 20.0% |
| !!! | TATAAGTTTTATTCCTTGTT+TGG | - | chr3.1:73291974-73291993 | MS.gene06938:intron | 20.0% |
| !!! | TTTACCAAATAACATTTTCA+AGG | + | chr3.1:73294230-73294249 | None:intergenic | 20.0% |
| !!! | TTTTTATTCATGTGAAGAAA+GGG | + | chr3.1:73294206-73294225 | None:intergenic | 20.0% |
| ! | AAAGCCTTGAAAATGTTATT+TGG | - | chr3.1:73294223-73294242 | MS.gene06938:intron | 25.0% |
| ! | AGAAGAAAAGAAAAACAAGT+AGG | + | chr3.1:73293033-73293052 | None:intergenic | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | - | chr3.1:73293659-73293678 | MS.gene06938:intron | 25.0% |
| ! | CAAAAAGGATCTATTTGAAA+AGG | - | chr3.1:73293401-73293420 | MS.gene06938:intron | 25.0% |
| ! | TAAGAAATGTGTAAATTCTC+AGG | + | chr3.1:73292908-73292927 | None:intergenic | 25.0% |
| ! | TCAAAATACTTAAACTGCAA+AGG | + | chr3.1:73292644-73292663 | None:intergenic | 25.0% |
| ! | TCATCAAAACAGAATAGAAT+AGG | + | chr3.1:73292796-73292815 | None:intergenic | 25.0% |
| ! | TGTATTCTATGATTGCAAAA+AGG | - | chr3.1:73293386-73293405 | MS.gene06938:intron | 25.0% |
| ! | TTGAAGAATAGAAATATCTG+TGG | + | chr3.1:73293346-73293365 | None:intergenic | 25.0% |
| !! | AAATAAAAAAGCGTAGAGAA+AGG | - | chr3.1:73292388-73292407 | MS.gene06938:intron | 25.0% |
| !! | AATAAAAAAGCGTAGAGAAA+GGG | - | chr3.1:73292389-73292408 | MS.gene06938:intron | 25.0% |
| !! | CTTTTTATTCATGTGAAGAA+AGG | + | chr3.1:73294207-73294226 | None:intergenic | 25.0% |
| !! | TATAAAGCAATAACTAGCTT+AGG | + | chr3.1:73292703-73292722 | None:intergenic | 25.0% |
| !!! | AATATTGTTTTGTGCTTTTG+TGG | - | chr3.1:73292761-73292780 | MS.gene06938:CDS | 25.0% |
| !!! | AATTATGGATCCTACTTTTA+AGG | - | chr3.1:73293746-73293765 | MS.gene06938:intron | 25.0% |
| !!! | AATTTTGAAACTTCACAGTT+TGG | - | chr3.1:73291907-73291926 | MS.gene06938:intron | 25.0% |
| !!! | TTCTATCCTTATTTTAAAGG+AGG | + | chr3.1:73292369-73292388 | None:intergenic | 25.0% |
| AAAGAATGAAGAATCTGATC+AGG | - | chr3.1:73294408-73294427 | MS.gene06938:CDS | 30.0% | |
| AAATTGTGTAGATAAGACCA+TGG | + | chr3.1:73291767-73291786 | None:intergenic | 30.0% | |
| AAGAAAACATTCAGACAGAA+AGG | + | chr3.1:73292087-73292106 | None:intergenic | 30.0% | |
| AATAAAACATGGCTTATCAG+TGG | + | chr3.1:73293099-73293118 | None:intergenic | 30.0% | |
| AATGAGAGGAATAAATACCT+AGG | + | chr3.1:73293776-73293795 | None:intergenic | 30.0% | |
| AATTGTGTAGATAAGACCAT+GGG | + | chr3.1:73291766-73291785 | None:intergenic | 30.0% | |
| AGAAAAGAAAAACAAGTAGG+AGG | + | chr3.1:73293030-73293049 | None:intergenic | 30.0% | |
| AGAAGGAAGATTATACAACA+CGG | + | chr3.1:73292235-73292254 | None:intergenic | 30.0% | |
| AGGTATTTATTCCTCTCATT+CGG | - | chr3.1:73293776-73293795 | MS.gene06938:intron | 30.0% | |
| ATAAAACATGGCTTATCAGT+GGG | + | chr3.1:73293098-73293117 | None:intergenic | 30.0% | |
| ATATTATCAACCACCAAACA+AGG | + | chr3.1:73291990-73292009 | None:intergenic | 30.0% | |
| CAGTACATATCAAGAAGAAA+AGG | + | chr3.1:73292849-73292868 | None:intergenic | 30.0% | |
| TATCTCACCATTTCTTTGAT+GGG | - | chr3.1:73291865-73291884 | MS.gene06938:intron | 30.0% | |
| TCTTCTTGATATGTACTGTT+TGG | - | chr3.1:73292851-73292870 | MS.gene06938:CDS | 30.0% | |
| TGAAAAACCCATCAAAGAAA+TGG | + | chr3.1:73291875-73291894 | None:intergenic | 30.0% | |
| TTCACATGAATAAAAAGCGA+GGG | - | chr3.1:73294010-73294029 | MS.gene06938:intron | 30.0% | |
| TTCCTTTGACCAAAATTAGA+AGG | + | chr3.1:73292571-73292590 | None:intergenic | 30.0% | |
| TTTCACATGAATAAAAAGCG+AGG | - | chr3.1:73294009-73294028 | MS.gene06938:intron | 30.0% | |
| ! | AAGAAGACAAAGAGGAATTT+TGG | - | chr3.1:73293932-73293951 | MS.gene06938:intron | 30.0% |
| ! | ACTAATCCACCTTCTAATTT+TGG | - | chr3.1:73292559-73292578 | MS.gene06938:CDS | 30.0% |
| ! | ATCTTTTCACATCCAGAAAT+CGG | - | chr3.1:73293700-73293719 | MS.gene06938:intron | 30.0% |
| ! | ATTCATATGATGATTTGGGT+TGG | - | chr3.1:73294323-73294342 | MS.gene06938:intron | 30.0% |
| ! | CAAAAGTAGGTAATGGTTTA+GGG | + | chr3.1:73294273-73294292 | None:intergenic | 30.0% |
| ! | TCAAAAGTAGGTAATGGTTT+AGG | + | chr3.1:73294274-73294293 | None:intergenic | 30.0% |
| !! | ATAGATTTTGATGCGGTTTA+TGG | - | chr3.1:73293624-73293643 | MS.gene06938:intron | 30.0% |
| !! | GAATTTTGGAAGGAAAATCA+AGG | - | chr3.1:73293946-73293965 | MS.gene06938:intron | 30.0% |
| !!! | AAGTTTTATTCCTTGTTTGG+TGG | - | chr3.1:73291977-73291996 | MS.gene06938:intron | 30.0% |
| AACACGGAACTATCACATAA+AGG | + | chr3.1:73292219-73292238 | None:intergenic | 35.0% | |
| AAGGATCTATTTGAAAAGGC+TGG | - | chr3.1:73293405-73293424 | MS.gene06938:intron | 35.0% | |
| AATAATGGCATATCAGGAAG+TGG | + | chr3.1:73293513-73293532 | None:intergenic | 35.0% | |
| AATCTATTCCTGAGATACCA+AGG | + | chr3.1:73293611-73293630 | None:intergenic | 35.0% | |
| ACACGGAACTATCACATAAA+GGG | + | chr3.1:73292218-73292237 | None:intergenic | 35.0% | |
| ACATTGCAGAAAACTGAACA+AGG | + | chr3.1:73293194-73293213 | None:intergenic | 35.0% | |
| ATGCGAAGATCATTTAGTGA+AGG | - | chr3.1:73293648-73293667 | MS.gene06938:intron | 35.0% | |
| ATGTGTAAATTCTCAGGTCT+AGG | + | chr3.1:73292902-73292921 | None:intergenic | 35.0% | |
| ATTTATTCCTCTCATTCGGA+TGG | - | chr3.1:73293780-73293799 | MS.gene06938:intron | 35.0% | |
| CATTCTTTGCAAATCTTCCA+CGG | + | chr3.1:73294396-73294415 | None:intergenic | 35.0% | |
| CTATCTCACCATTTCTTTGA+TGG | - | chr3.1:73291864-73291883 | MS.gene06938:intron | 35.0% | |
| CTGCAGTTACTGGTAAAAAA+CGG | + | chr3.1:73293872-73293891 | None:intergenic | 35.0% | |
| CTTTGACCAAAATTAGAAGG+TGG | + | chr3.1:73292568-73292587 | None:intergenic | 35.0% | |
| GTAGCTTCAAAAGTAGGTAA+TGG | + | chr3.1:73294280-73294299 | None:intergenic | 35.0% | |
| GTGAAGTGTGAAATCTTAGT+GGG | - | chr3.1:73292276-73292295 | MS.gene06938:CDS | 35.0% | |
| GTTGAGAAACAGTCTCTATA+TGG | - | chr3.1:73293065-73293084 | MS.gene06938:intron | 35.0% | |
| TACAAAAGCTCTCTAGATAC+AGG | - | chr3.1:73293906-73293925 | MS.gene06938:intron | 35.0% | |
| TCACATGAATAAAAAGCGAG+GGG | - | chr3.1:73294011-73294030 | MS.gene06938:intron | 35.0% | |
| TCATTGACAATTGCCAATGA+TGG | - | chr3.1:73292504-73292523 | MS.gene06938:CDS | 35.0% | |
| TCGTTAGTAGCTTCAAAAGT+AGG | + | chr3.1:73294286-73294305 | None:intergenic | 35.0% | |
| TCTATTTGAAAAGGCTGGAA+TGG | - | chr3.1:73293410-73293429 | MS.gene06938:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr3.1:73294106-73294125 | MS.gene06938:intron | 35.0% | |
| TGAAGTGTGAAATCTTAGTG+GGG | - | chr3.1:73292277-73292296 | MS.gene06938:CDS | 35.0% | |
| TGTGAAGTGTGAAATCTTAG+TGG | - | chr3.1:73292275-73292294 | MS.gene06938:CDS | 35.0% | |
| TTCGGTAATAATGGCATATC+AGG | + | chr3.1:73293519-73293538 | None:intergenic | 35.0% | |
| TTCTCGTCAATGTTCAGTAA+TGG | + | chr3.1:73293471-73293490 | None:intergenic | 35.0% | |
| TTCTGCTGCAAAATCATACT+CGG | + | chr3.1:73293217-73293236 | None:intergenic | 35.0% | |
| ! | AAAATGGTCTTCTTTTCCCA+TGG | - | chr3.1:73291747-73291766 | MS.gene06938:CDS | 35.0% |
| ! | AGACAAAGAGGAATTTTGGA+AGG | - | chr3.1:73293936-73293955 | MS.gene06938:intron | 35.0% |
| ! | AGCAATAACTAGCTTAGGTT+AGG | + | chr3.1:73292698-73292717 | None:intergenic | 35.0% |
| ! | CTGATAAAGTATCCGATTTC+TGG | + | chr3.1:73293715-73293734 | None:intergenic | 35.0% |
| ! | GAAGTTTAAGTTCGATGGAT+TGG | - | chr3.1:73293553-73293572 | MS.gene06938:intron | 35.0% |
| ! | GATTTCTGGATGTGAAAAGA+TGG | + | chr3.1:73293701-73293720 | None:intergenic | 35.0% |
| ! | TGTATCTAGAGAGCTTTTGT+AGG | + | chr3.1:73293907-73293926 | None:intergenic | 35.0% |
| !! | AATTGCCAATGATGGTTTTG+AGG | - | chr3.1:73292512-73292531 | MS.gene06938:CDS | 35.0% |
| !! | ATTTCTAGAATCTCAGAGAG+CGG | + | chr3.1:73293441-73293460 | None:intergenic | 35.0% |
| !! | CACCTTCTAATTTTGGTCAA+AGG | - | chr3.1:73292566-73292585 | MS.gene06938:CDS | 35.0% |
| !! | CTCAGGAATAGATTTTGATG+CGG | - | chr3.1:73293617-73293636 | MS.gene06938:intron | 35.0% |
| !! | CTCTGAGATTCTAGAAATCA+AGG | - | chr3.1:73293443-73293462 | MS.gene06938:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr3.1:73294107-73294126 | None:intergenic | 35.0% |
| !!! | TTTTTTTTGTGCTGCACTGA+GGG | - | chr3.1:73292309-73292328 | MS.gene06938:CDS | 35.0% |
| !!! | TTTTTTTTTGTGCTGCACTG+AGG | - | chr3.1:73292308-73292327 | MS.gene06938:CDS | 35.0% |
| AAAGCGTAGAGAAAGGGATT+TGG | - | chr3.1:73292395-73292414 | MS.gene06938:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr3.1:73294100-73294119 | MS.gene06938:intron | 40.0% | |
| ACAGGAACAAGAAGACAAAG+AGG | - | chr3.1:73293924-73293943 | MS.gene06938:intron | 40.0% | |
| AGAATCTGATCAGGCAAAGA+AGG | - | chr3.1:73294417-73294436 | MS.gene06938:CDS | 40.0% | |
| AGGGATTTACAAGGATGGTT+AGG | - | chr3.1:73292610-73292629 | MS.gene06938:CDS | 40.0% | |
| AGTGTAGGGATTTACAAGGA+TGG | - | chr3.1:73292605-73292624 | MS.gene06938:CDS | 40.0% | |
| ATGCCTGACTCTTCAATCAT+CGG | + | chr3.1:73293264-73293283 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr3.1:73294101-73294120 | MS.gene06938:intron | 40.0% | |
| CCAGAAGTTCAATGCTTCAA+TGG | - | chr3.1:73291826-73291845 | MS.gene06938:intron | 40.0% | |
| CCTAGGAACACCTTAAAAGT+AGG | + | chr3.1:73293759-73293778 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr3.1:73294132-73294151 | MS.gene06938:intron | 40.0% | |
| CTAACGCTCTTCGGTAATAA+TGG | + | chr3.1:73293528-73293547 | None:intergenic | 40.0% | |
| CTTGAGTGTAGGGATTTACA+AGG | - | chr3.1:73292601-73292620 | MS.gene06938:CDS | 40.0% | |
| CTTGTAAATCCCTACACTCA+AGG | + | chr3.1:73292603-73292622 | None:intergenic | 40.0% | |
| GCCACAAGATATCATTGAGA+TGG | + | chr3.1:73293310-73293329 | None:intergenic | 40.0% | |
| GCCATCTCAATGATATCTTG+TGG | - | chr3.1:73293306-73293325 | MS.gene06938:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr3.1:73294056-73294075 | MS.gene06938:intron | 40.0% | |
| TATGAACGTTGTCCAATCTC+CGG | - | chr3.1:73293838-73293857 | MS.gene06938:intron | 40.0% | |
| TCTCATAGTAGTAGCACAAG+TGG | - | chr3.1:73292110-73292129 | MS.gene06938:intron | 40.0% | |
| ! | CTCAGGAAGTTTAAGTTCGA+TGG | - | chr3.1:73293548-73293567 | MS.gene06938:intron | 40.0% |
| ! | GAGTATGATTTTGCAGCAGA+AGG | - | chr3.1:73293216-73293235 | MS.gene06938:intron | 40.0% |
| ! | GTTTAGGGCATGTTATAAGC+AGG | + | chr3.1:73294258-73294277 | None:intergenic | 40.0% |
| !! | CCATTGAAGCATTGAACTTC+TGG | + | chr3.1:73291829-73291848 | None:intergenic | 40.0% |
| !! | CGCTTGCCTCCTTTAAAATA+AGG | - | chr3.1:73292360-73292379 | MS.gene06938:intron | 40.0% |
| !!! | CCTACTTTTAAGGTGTTCCT+AGG | - | chr3.1:73293756-73293775 | MS.gene06938:intron | 40.0% |
| !!! | CTGTTTTTGTGACAGACTCT+TGG | - | chr3.1:73293806-73293825 | MS.gene06938:intron | 40.0% |
| !!! | TTTTTTTGTGCTGCACTGAG+GGG | - | chr3.1:73292310-73292329 | MS.gene06938:CDS | 40.0% |
| ACAGAAACCATCCGAATGAG+AGG | + | chr3.1:73293790-73293809 | None:intergenic | 45.0% | |
| ATTGAGATGGCTGCTGTCAT+GGG | + | chr3.1:73293297-73293316 | None:intergenic | 45.0% | |
| CCTAGCCTCAAAACCATCAT+TGG | + | chr3.1:73292520-73292539 | None:intergenic | 45.0% | |
| GAACCGATGATTGAAGAGTC+AGG | - | chr3.1:73293258-73293277 | MS.gene06938:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3.1:73294131-73294150 | MS.gene06938:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr3.1:73294128-73294147 | MS.gene06938:intron | 45.0% | |
| GTAAATCCCTACACTCAAGG+TGG | + | chr3.1:73292600-73292619 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr3.1:73294062-73294081 | MS.gene06938:intron | 45.0% | |
| GTTTCAGTATGCTTGCAGGA+AGG | - | chr3.1:73294345-73294364 | MS.gene06938:CDS | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr3.1:73294063-73294082 | MS.gene06938:intron | 45.0% | |
| ! | AGGCTAGGTCTTTGGTTTAG+TGG | - | chr3.1:73292532-73292551 | MS.gene06938:CDS | 45.0% |
| ! | GTTGGTTTCAGTATGCTTGC+AGG | - | chr3.1:73294341-73294360 | MS.gene06938:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3.1:73294096-73294115 | None:intergenic | 45.0% |
| !! | AGTTCGATGGATTGGATGCA+TGG | - | chr3.1:73293561-73293580 | MS.gene06938:intron | 45.0% |
| !! | GACTCTTCAATCATCGGTTC+AGG | + | chr3.1:73293258-73293277 | None:intergenic | 45.0% |
| !!! | CCAATGATGGTTTTGAGGCT+AGG | - | chr3.1:73292517-73292536 | MS.gene06938:CDS | 45.0% |
| !!! | TGGTTTTGAGGCTAGGTCTT+TGG | - | chr3.1:73292524-73292543 | MS.gene06938:CDS | 45.0% |
| ATCTGCGATAGTGAAGCGAC+AGG | + | chr3.1:73292989-73293008 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3.1:73294040-73294059 | None:intergenic | 50.0% | |
| CATGTGAAGAAAGGGCAACC+CGG | + | chr3.1:73294198-73294217 | None:intergenic | 50.0% | |
| CATTGAGATGGCTGCTGTCA+TGG | + | chr3.1:73293298-73293317 | None:intergenic | 50.0% | |
| CCTGAGATACCAAGGAAAGC+AGG | + | chr3.1:73293603-73293622 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGGTATCTC+AGG | - | chr3.1:73293600-73293619 | MS.gene06938:intron | 50.0% | |
| CTTCCTGAGCTAACGCTCTT+CGG | + | chr3.1:73293537-73293556 | None:intergenic | 50.0% | |
| GAGTGTCCACCTTGAGTGTA+GGG | - | chr3.1:73292591-73292610 | MS.gene06938:CDS | 50.0% | |
| GCAAATCTTCCACGGACTCT+TGG | + | chr3.1:73294388-73294407 | None:intergenic | 50.0% | |
| GCAATGAAGCCTGCTTTCCT+TGG | - | chr3.1:73293591-73293610 | MS.gene06938:intron | 50.0% | |
| GCACTGAGGGGAGATTAAAG+AGG | - | chr3.1:73292322-73292341 | MS.gene06938:CDS | 50.0% | |
| GTAAAAAACGGCCTCTCCAC+CGG | + | chr3.1:73293860-73293879 | None:intergenic | 50.0% | |
| GTAGCACAAGTGGAAACAGC+TGG | - | chr3.1:73292120-73292139 | MS.gene06938:intron | 50.0% | |
| TAAAAAGCGAGGGGTGACCT+TGG | - | chr3.1:73294020-73294039 | MS.gene06938:intron | 50.0% | |
| TACCAGTAACTGCAGCAGTG+AGG | - | chr3.1:73293877-73293896 | MS.gene06938:intron | 50.0% | |
| ! | AGAGTGTCCACCTTGAGTGT+AGG | - | chr3.1:73292590-73292609 | MS.gene06938:CDS | 50.0% |
| !! | TTACCGAAGAGCGTTAGCTC+AGG | - | chr3.1:73293531-73293550 | MS.gene06938:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3.1:73294075-73294094 | MS.gene06938:intron | 55.0% | |
| CTCCTCACTGCTGCAGTTAC+TGG | + | chr3.1:73293882-73293901 | None:intergenic | 55.0% | |
| GAACGTTGTCCAATCTCCGG+TGG | - | chr3.1:73293841-73293860 | MS.gene06938:intron | 55.0% | |
| GACAGTCAACCAAGAGTCCG+TGG | - | chr3.1:73294376-73294395 | MS.gene06938:CDS | 55.0% | |
| TTGTCCAATCTCCGGTGGAG+AGG | - | chr3.1:73293846-73293865 | MS.gene06938:intron | 55.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr3.1:73294172-73294191 | None:intergenic | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr3.1:73294176-73294195 | MS.gene06938:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr3.1:73294171-73294190 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr3.1:73294144-73294163 | MS.gene06938:intron | 60.0% |
| ACGGCCTCTCCACCGGAGAT+TGG | + | chr3.1:73293853-73293872 | None:intergenic | 65.0% | |
| AGGGGTGACCTTGGCGCAAC+TGG | - | chr3.1:73294029-73294048 | MS.gene06938:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr3.1:73294159-73294178 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3.1:73294146-73294165 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr3.1:73294159-73294178 | MS.gene06938:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr3.1:73294160-73294179 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr3.1:73294177-73294196 | MS.gene06938:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr3.1:73294160-73294179 | MS.gene06938:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr3.1:73294161-73294180 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr3.1:73294165-73294184 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr3.1:73294166-73294185 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73291737 | 73294444 | 73291737 | ID=MS.gene06938 |
| chr3.1 | mRNA | 73291737 | 73294444 | 73291737 | ID=MS.gene06938.t1;Parent=MS.gene06938 |
| chr3.1 | exon | 73294334 | 73294444 | 73294334 | ID=MS.gene06938.t1.exon1;Parent=MS.gene06938.t1 |
| chr3.1 | CDS | 73294334 | 73294444 | 73294334 | ID=cds.MS.gene06938.t1;Parent=MS.gene06938.t1 |
| chr3.1 | exon | 73292501 | 73292995 | 73292501 | ID=MS.gene06938.t1.exon2;Parent=MS.gene06938.t1 |
| chr3.1 | CDS | 73292501 | 73292995 | 73292501 | ID=cds.MS.gene06938.t1;Parent=MS.gene06938.t1 |
| chr3.1 | exon | 73292214 | 73292360 | 73292214 | ID=MS.gene06938.t1.exon3;Parent=MS.gene06938.t1 |
| chr3.1 | CDS | 73292214 | 73292360 | 73292214 | ID=cds.MS.gene06938.t1;Parent=MS.gene06938.t1 |
| chr3.1 | exon | 73291737 | 73291829 | 73291737 | ID=MS.gene06938.t1.exon4;Parent=MS.gene06938.t1 |
| chr3.1 | CDS | 73291737 | 73291829 | 73291737 | ID=cds.MS.gene06938.t1;Parent=MS.gene06938.t1 |
| Gene Sequence |
| Protein sequence |
