Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021465.t1 | XP_003588527.1 | 97.9 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 1.20E-148 | 535.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021465.t1 | Q9FHH8 | 43.2 | 74 | 40 | 1 | 207 | 278 | 258 | 331 | 3.3e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021465.t1 | G7I4B0 | 97.9 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 8.7e-149 | 535.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene021465.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021465 | MS.gene56038 | PPI |
| MS.gene059145 | MS.gene021465 | PPI |
| MS.gene021465 | MS.gene31626 | PPI |
| MS.gene56037 | MS.gene021465 | PPI |
| MS.gene06938 | MS.gene021465 | PPI |
| MS.gene021465 | MS.gene013601 | PPI |
| MS.gene021464 | MS.gene021465 | PPI |
| MS.gene021465 | MS.gene06720 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021465.t1 | MTR_1g008220 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 573 |
| MS.gene021465.t1 | MTR_1g008220 | 98.419 | 253 | 4 | 0 | 1 | 253 | 1 | 253 | 0.0 | 514 |
| MS.gene021465.t1 | MTR_3g091340 | 72.695 | 282 | 67 | 5 | 1 | 278 | 1 | 276 | 5.69e-135 | 383 |
| MS.gene021465.t1 | MTR_3g091340 | 74.390 | 246 | 55 | 4 | 35 | 278 | 1 | 240 | 7.09e-119 | 340 |
| MS.gene021465.t1 | MTR_3g091340 | 74.286 | 245 | 55 | 4 | 36 | 278 | 9 | 247 | 4.67e-118 | 339 |
| MS.gene021465.t1 | MTR_8g098725 | 48.235 | 85 | 42 | 1 | 194 | 276 | 185 | 269 | 6.20e-21 | 90.9 |
| MS.gene021465.t1 | MTR_8g098725 | 47.191 | 89 | 41 | 2 | 194 | 276 | 185 | 273 | 2.10e-19 | 86.7 |
| MS.gene021465.t1 | MTR_4g061823 | 36.691 | 139 | 71 | 4 | 152 | 277 | 56 | 190 | 3.78e-18 | 82.0 |
| MS.gene021465.t1 | MTR_4g061910 | 36.691 | 139 | 71 | 4 | 152 | 277 | 56 | 190 | 3.78e-18 | 82.0 |
| MS.gene021465.t1 | MTR_5g010120 | 45.882 | 85 | 42 | 1 | 194 | 278 | 139 | 219 | 2.52e-17 | 79.7 |
| MS.gene021465.t1 | MTR_1g044785 | 35.172 | 145 | 76 | 4 | 150 | 277 | 36 | 179 | 4.56e-17 | 78.6 |
| MS.gene021465.t1 | MTR_1g073350 | 36.296 | 135 | 69 | 4 | 159 | 277 | 228 | 361 | 1.93e-16 | 79.0 |
| MS.gene021465.t1 | MTR_2g096080 | 33.813 | 139 | 76 | 4 | 154 | 280 | 69 | 203 | 2.00e-16 | 77.4 |
| MS.gene021465.t1 | MTR_2g068730 | 53.061 | 49 | 23 | 0 | 228 | 276 | 159 | 207 | 1.56e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021465.t1 | AT5G53420 | 50.896 | 279 | 117 | 9 | 1 | 276 | 1 | 262 | 9.63e-85 | 255 |
| MS.gene021465.t1 | AT4G27900 | 50.534 | 281 | 113 | 7 | 1 | 277 | 1 | 259 | 9.15e-83 | 249 |
| MS.gene021465.t1 | AT4G27900 | 50.534 | 281 | 113 | 7 | 1 | 277 | 1 | 259 | 9.15e-83 | 249 |
| MS.gene021465.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 79 | 276 | 1 | 183 | 3.17e-64 | 200 |
| MS.gene021465.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 79 | 276 | 1 | 183 | 3.17e-64 | 200 |
| MS.gene021465.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 79 | 276 | 1 | 183 | 3.17e-64 | 200 |
| MS.gene021465.t1 | AT5G53420 | 42.381 | 210 | 108 | 6 | 1 | 208 | 1 | 199 | 6.71e-46 | 154 |
| MS.gene021465.t1 | AT5G41380 | 46.316 | 95 | 45 | 2 | 189 | 277 | 166 | 260 | 1.15e-19 | 87.4 |
| MS.gene021465.t1 | AT1G63820 | 41.584 | 101 | 40 | 2 | 194 | 277 | 139 | 237 | 8.04e-19 | 84.7 |
| MS.gene021465.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 184 | 277 | 238 | 355 | 5.57e-17 | 80.5 |
| MS.gene021465.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 184 | 277 | 227 | 344 | 8.05e-17 | 80.1 |
| MS.gene021465.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 184 | 277 | 247 | 364 | 8.31e-17 | 80.1 |
| MS.gene021465.t1 | AT1G04500 | 37.209 | 129 | 75 | 3 | 149 | 277 | 211 | 333 | 1.49e-16 | 79.3 |
| MS.gene021465.t1 | AT1G04500 | 37.209 | 129 | 75 | 3 | 149 | 277 | 211 | 333 | 1.49e-16 | 79.3 |
| MS.gene021465.t1 | AT1G04500 | 37.209 | 129 | 75 | 3 | 149 | 277 | 202 | 324 | 1.74e-16 | 79.0 |
| MS.gene021465.t1 | AT2G33350 | 56.452 | 62 | 24 | 1 | 216 | 277 | 298 | 356 | 6.08e-16 | 77.8 |
| MS.gene021465.t1 | AT5G59990 | 59.091 | 44 | 18 | 0 | 239 | 282 | 170 | 213 | 1.27e-11 | 63.5 |
Find 59 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCTTATTCCTATATC+TGG | 0.246824 | 1.4:+11343692 | None:intergenic |
| TTCAGGAAATTTGAGTTCAA+TGG | 0.350069 | 1.4:-11344335 | MS.gene021465:CDS |
| GCAAATCTTCCACGGATTCT+TGG | 0.350555 | 1.4:+11342941 | None:intergenic |
| GATAATAGTACATCAGGAAT+TGG | 0.361584 | 1.4:+11344370 | None:intergenic |
| CCTGCTTTCCTTGATTTCCC+TGG | 0.370726 | 1.4:-11344286 | MS.gene021465:CDS |
| CCGTGGAAGATTTGCGAAAA+CGG | 0.381688 | 1.4:-11342933 | MS.gene021465:CDS |
| AAGAAGACAAGGAGAAACTT+TGG | 0.387483 | 1.4:-11343678 | MS.gene021465:CDS |
| CATGGTTTCAGTATGCTTGT+AGG | 0.397320 | 1.4:-11342985 | MS.gene021465:intron |
| AGGAAAGCAGGCTTCATTGC+AGG | 0.402149 | 1.4:+11344298 | None:intergenic |
| ACCGCGTTAAAATCAATTCC+AGG | 0.422111 | 1.4:+11344268 | None:intergenic |
| GAAATTTGAGTTCAATGGAT+TGG | 0.431971 | 1.4:-11344330 | MS.gene021465:CDS |
| TTATCAAAGAGTGTCAGTTC+AGG | 0.440427 | 1.4:-11344352 | MS.gene021465:CDS |
| GAGCAGGAATCTTGATTTCA+AGG | 0.444374 | 1.4:+11344428 | None:intergenic |
| CTCTTTGATAATAGTACATC+AGG | 0.447091 | 1.4:+11344364 | None:intergenic |
| TGAGAGTAATTCTGTAGATA+AGG | 0.454318 | 1.4:+11346734 | None:intergenic |
| AGAAGACAAGGAGAAACTTT+GGG | 0.461172 | 1.4:-11343677 | MS.gene021465:CDS |
| GTGCAGTTGCTGAGAAGAAA+AGG | 0.470162 | 1.4:+11343741 | None:intergenic |
| AATCAATTCCAGGGAAATCA+AGG | 0.470610 | 1.4:+11344278 | None:intergenic |
| TGGGGAAGACATGTCGTCGC+AGG | 0.471749 | 1.4:-11344572 | MS.gene021465:CDS |
| ATTTAGTGAAGGAGATATAA+AGG | 0.474162 | 1.4:-11344227 | MS.gene021465:intron |
| TCATAAGTCCAATGCTTCAA+TGG | 0.475058 | 1.4:-11346678 | MS.gene021465:intron |
| GAGAGTAATTCTGTAGATAA+GGG | 0.476998 | 1.4:+11346735 | None:intergenic |
| CGGTTCTTCAATAATCGTCT+CGG | 0.477444 | 1.4:+11344642 | None:intergenic |
| CGAGACGATTATTGAAGAAC+CGG | 0.482715 | 1.4:-11344641 | MS.gene021465:CDS |
| TGGCTGCTTGCATTTGATCA+AGG | 0.489809 | 1.4:+11344611 | None:intergenic |
| GTCGCAGGGTCTAAAATCTT+CGG | 0.499847 | 1.4:-11344557 | MS.gene021465:CDS |
| AGAGGGTACCATTGAAGCAT+TGG | 0.503291 | 1.4:+11346670 | None:intergenic |
| TTGTTTGTATAACAGACTCT+TGG | 0.509295 | 1.4:-11343804 | MS.gene021465:intron |
| AGAATTTGATTTATTTGTAG+AGG | 0.514069 | 1.4:-11344683 | MS.gene021465:CDS |
| TTCTCGTCAATGTTCAGAGC+AGG | 0.527138 | 1.4:+11344412 | None:intergenic |
| ATTTGATCAAGGTCCATCTC+CGG | 0.536269 | 1.4:+11344622 | None:intergenic |
| CCAGGGAAATCAAGGAAAGC+AGG | 0.538494 | 1.4:+11344286 | None:intergenic |
| GAATTTGATTTATTTGTAGA+GGG | 0.539422 | 1.4:-11344682 | MS.gene021465:CDS |
| AGTTCAATGGATTGGATGCA+TGG | 0.542974 | 1.4:-11344322 | MS.gene021465:CDS |
| ATTTCAAGGATTTCAGAAAG+AGG | 0.543254 | 1.4:+11344442 | None:intergenic |
| GCAGCCATGTCAATGATGTC+TGG | 0.545025 | 1.4:-11344595 | MS.gene021465:CDS |
| GATTATTGAAGAACCGGAGA+TGG | 0.549985 | 1.4:-11344635 | MS.gene021465:CDS |
| GGTTCTTCAATAATCGTCTC+GGG | 0.551243 | 1.4:+11344643 | None:intergenic |
| CCGCGTTAAAATCAATTCCA+GGG | 0.559154 | 1.4:+11344269 | None:intergenic |
| AAGGCCTCTCTAGAGTGGAT+TGG | 0.563933 | 1.4:+11343760 | None:intergenic |
| AAACTTTGGGAGGAAAATCA+AGG | 0.564099 | 1.4:-11343664 | MS.gene021465:intron |
| GGGGAAGACATGTCGTCGCA+GGG | 0.576526 | 1.4:-11344571 | MS.gene021465:CDS |
| AAGAAAAGGCCTCTCTAGAG+TGG | 0.578670 | 1.4:+11343755 | None:intergenic |
| CGGAGGAGTTAGATATCAAG+AGG | 0.594972 | 1.4:-11342913 | MS.gene021465:CDS |
| CCATGTCAATGATGTCTGGT+GGG | 0.605089 | 1.4:-11344591 | MS.gene021465:CDS |
| GTTTCAGTATGCTTGTAGGA+AGG | 0.605930 | 1.4:-11342981 | MS.gene021465:intron |
| GTATAACAGACTCTTGGCAA+TGG | 0.606169 | 1.4:-11343798 | MS.gene021465:intron |
| GACAGTCAACCAAGAATCCG+TGG | 0.616160 | 1.4:-11342950 | MS.gene021465:CDS |
| GGCAATGGTAACATGAGTGT+TGG | 0.622717 | 1.4:-11343783 | MS.gene021465:CDS |
| CCCACCAGACATCATTGACA+TGG | 0.626711 | 1.4:+11344591 | None:intergenic |
| GCCATGTCAATGATGTCTGG+TGG | 0.631276 | 1.4:-11344592 | MS.gene021465:CDS |
| GATATAGGAATAAGAAGACA+AGG | 0.632233 | 1.4:-11343689 | MS.gene021465:CDS |
| ATGCGAAGAGCATTTAGTGA+AGG | 0.636958 | 1.4:-11344238 | MS.gene021465:CDS |
| AGAAAGAGGTGATTCTATAG+CGG | 0.645696 | 1.4:+11344456 | None:intergenic |
| TTGGCCAATCCACTCTAGAG+AGG | 0.651640 | 1.4:-11343764 | MS.gene021465:CDS |
| TGGAAGATTTGCGAAAACGG+AGG | 0.654676 | 1.4:-11342930 | MS.gene021465:CDS |
| ACATCGCATATGATTGAACA+AGG | 0.660417 | 1.4:+11344707 | None:intergenic |
| CATGTCAATGATGTCTGGTG+GGG | 0.675165 | 1.4:-11344590 | MS.gene021465:CDS |
| AGACAAGGAGAAACTTTGGG+AGG | 0.688525 | 1.4:-11343674 | MS.gene021465:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAATACTAATATTTAAA+AGG | - | chr1.4:11344822-11344841 | MS.gene021465:intron | 10.0% |
| !! | TATAAATTAAATAACATCTA+TGG | - | chr1.4:11345502-11345521 | MS.gene021465:intron | 10.0% |
| !!! | TTAATTTTTCTTCAATTTTA+TGG | - | chr1.4:11343721-11343740 | MS.gene021465:CDS | 10.0% |
| !! | AAAAATTGATTAAGTTCATA+AGG | - | chr1.4:11343520-11343539 | MS.gene021465:intron | 15.0% |
| !! | AATATTATTACCAAGAAAAA+AGG | + | chr1.4:11343834-11343853 | None:intergenic | 15.0% |
| !! | ATAAAAAATATCACAGAAAT+TGG | + | chr1.4:11343048-11343067 | None:intergenic | 15.0% |
| !! | ATATTATTACCAAGAAAAAA+GGG | + | chr1.4:11343833-11343852 | None:intergenic | 15.0% |
| !! | TAAATATATAGTTACAAAAG+AGG | - | chr1.4:11343910-11343929 | MS.gene021465:intron | 15.0% |
| !! | TTAAACATTATATGTTGTAT+TGG | - | chr1.4:11345533-11345552 | MS.gene021465:intron | 15.0% |
| !! | TTGAAGTTAGATTAATTTAA+CGG | - | chr1.4:11344009-11344028 | MS.gene021465:intron | 15.0% |
| !!! | ATATTTCTTAATAGTTTTCT+AGG | - | chr1.4:11343225-11343244 | MS.gene021465:intron | 15.0% |
| !!! | ATATTTTCTTTATGAGTATA+TGG | - | chr1.4:11343446-11343465 | MS.gene021465:intron | 15.0% |
| !!! | TAATTTTAATCATATGTGAT+TGG | - | chr1.4:11343389-11343408 | MS.gene021465:intron | 15.0% |
| !!! | TTATGATACTTTTCTATTAT+TGG | - | chr1.4:11344855-11344874 | MS.gene021465:intron | 15.0% |
| !! | AAATGAATTTAAGAAAGTCT+TGG | + | chr1.4:11346376-11346395 | None:intergenic | 20.0% |
| !! | AATTCTCAATAGTTAGTTAA+TGG | - | chr1.4:11344788-11344807 | MS.gene021465:intron | 20.0% |
| !! | ACATATAATGTTTAACAAAG+TGG | + | chr1.4:11345528-11345547 | None:intergenic | 20.0% |
| !! | ATTATGTACATAATTAGTTG+AGG | + | chr1.4:11343289-11343308 | None:intergenic | 20.0% |
| !! | TATAAATTAAGTAACATCCA+TGG | + | chr1.4:11345781-11345800 | None:intergenic | 20.0% |
| !! | TCTATGTATCTATCTATATA+TGG | - | chr1.4:11343354-11343373 | MS.gene021465:intron | 20.0% |
| !! | TGAAGAAAAATTAAAGAACA+CGG | + | chr1.4:11343715-11343734 | None:intergenic | 20.0% |
| !! | TTCATAAAAGAAGAAAGTTA+TGG | - | chr1.4:11344154-11344173 | MS.gene021465:intron | 20.0% |
| !! | TTGCATCTCATTAAATATTA+AGG | - | chr1.4:11346105-11346124 | MS.gene021465:intron | 20.0% |
| !!! | ACATTATTAGAATTTGAGTT+CGG | + | chr1.4:11346661-11346680 | None:intergenic | 20.0% |
| !!! | AGAATTTGATTTATTTGTAG+AGG | - | chr1.4:11344985-11345004 | MS.gene021465:intron | 20.0% |
| !!! | CACATGTTAATAATTCATTT+TGG | - | chr1.4:11343872-11343891 | MS.gene021465:intron | 20.0% |
| !!! | GAATTTGATTTATTTGTAGA+GGG | - | chr1.4:11344986-11345005 | MS.gene021465:intron | 20.0% |
| !!! | TCTTGGTAATAATATTGAAA+AGG | - | chr1.4:11343838-11343857 | MS.gene021465:intron | 20.0% |
| !!! | TTAAATTTTTATATTGGACC+TGG | + | chr1.4:11345656-11345675 | None:intergenic | 20.0% |
| !!! | TTTCAAAGTCAGATTTTTTT+GGG | - | chr1.4:11344277-11344296 | MS.gene021465:CDS | 20.0% |
| !!! | TTTTATGAATACACAAAACA+CGG | + | chr1.4:11344143-11344162 | None:intergenic | 20.0% |
| ! | AAAATTTCAAAAGATGTGTG+AGG | + | chr1.4:11346080-11346099 | None:intergenic | 25.0% |
| ! | AAGAGAGAAGAAAAAAAAGA+GGG | + | chr1.4:11343018-11343037 | None:intergenic | 25.0% |
| ! | AGATATAAAGGTCAACTTAA+AGG | - | chr1.4:11345453-11345472 | MS.gene021465:intron | 25.0% |
| ! | AGGTTATTTGAATTGGTATT+AGG | + | chr1.4:11344339-11344358 | None:intergenic | 25.0% |
| ! | ATTAATCTAACTTCAAAGTG+CGG | + | chr1.4:11344005-11344024 | None:intergenic | 25.0% |
| ! | ATTCCATCAAGTAATTGTTA+AGG | + | chr1.4:11344678-11344697 | None:intergenic | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | - | chr1.4:11345441-11345460 | MS.gene021465:intron | 25.0% |
| ! | CAAAAAAGATCTCTTAGAAA+AGG | - | chr1.4:11345189-11345208 | MS.gene021465:intron | 25.0% |
| ! | CAAATTCTAATAATGTTGCA+TGG | - | chr1.4:11346665-11346684 | MS.gene021465:intron | 25.0% |
| ! | CTCATTAAATATTAAGGATC+CGG | - | chr1.4:11346111-11346130 | MS.gene021465:intron | 25.0% |
| ! | GGAAATAAAAGTGATTAAGA+TGG | - | chr1.4:11343665-11343684 | MS.gene021465:CDS | 25.0% |
| ! | TTCTATAACCTATGAAAACT+CGG | - | chr1.4:11344539-11344558 | MS.gene021465:CDS | 25.0% |
| ! | TTTGCCATATCAAAATGATT+TGG | - | chr1.4:11345828-11345847 | MS.gene021465:intron | 25.0% |
| !! | ATATAATGTCTAAGACAAAG+AGG | - | chr1.4:11345755-11345774 | MS.gene021465:intron | 25.0% |
| !! | GAAATTTGTAATTTGCATAG+TGG | - | chr1.4:11344652-11344671 | MS.gene021465:CDS | 25.0% |
| !! | TCTTACAAAACTAGTTTGTA+AGG | + | chr1.4:11345628-11345647 | None:intergenic | 25.0% |
| !!! | ATCATTTTGATATGGCAAAT+AGG | + | chr1.4:11345827-11345846 | None:intergenic | 25.0% |
| !!! | CATATTATTCCCTTTTTTCT+TGG | - | chr1.4:11343821-11343840 | MS.gene021465:intron | 25.0% |
| !!! | CTTTCAAAGTCAGATTTTTT+TGG | - | chr1.4:11344276-11344295 | MS.gene021465:CDS | 25.0% |
| !!! | TACACCAAATCATTTTGATA+TGG | + | chr1.4:11345835-11345854 | None:intergenic | 25.0% |
| AAGAAAAACTCTCCAGATAT+AGG | - | chr1.4:11345964-11345983 | MS.gene021465:intron | 30.0% | |
| AATGACAAAAGACATACTAG+GGG | + | chr1.4:11344893-11344912 | None:intergenic | 30.0% | |
| AGAATGACAAAAGACATACT+AGG | + | chr1.4:11344895-11344914 | None:intergenic | 30.0% | |
| ATTTCAAGGATTTCAGAAAG+AGG | + | chr1.4:11345229-11345248 | None:intergenic | 30.0% | |
| CAAGAGAGAAGAAAAAAAAG+AGG | + | chr1.4:11343019-11343038 | None:intergenic | 30.0% | |
| CTTTCTCTCTCTTTGTAAAA+TGG | - | chr1.4:11344592-11344611 | MS.gene021465:CDS | 30.0% | |
| GAAAAGATTTAGACCAATAG+AGG | + | chr1.4:11344629-11344648 | None:intergenic | 30.0% | |
| GAATGACAAAAGACATACTA+GGG | + | chr1.4:11344894-11344913 | None:intergenic | 30.0% | |
| GACTATCTAATCCAAATCAA+TGG | + | chr1.4:11346251-11346270 | None:intergenic | 30.0% | |
| GAGAGTAATTCTGTAGATAA+GGG | + | chr1.4:11342936-11342955 | None:intergenic | 30.0% | |
| GATAATAGTACATCAGGAAT+TGG | + | chr1.4:11345301-11345320 | None:intergenic | 30.0% | |
| GATATAGGAATAAGAAGACA+AGG | - | chr1.4:11345979-11345998 | MS.gene021465:intron | 30.0% | |
| TAAAGTCTTCTATGTTCATG+TGG | + | chr1.4:11346037-11346056 | None:intergenic | 30.0% | |
| TAACTACTGCAGAAAATTCT+CGG | + | chr1.4:11344484-11344503 | None:intergenic | 30.0% | |
| TATGTTGATGTATCTAGACT+CGG | - | chr1.4:11345676-11345695 | MS.gene021465:intron | 30.0% | |
| TATTACTCAGCTCAAGAATA+TGG | + | chr1.4:11344182-11344201 | None:intergenic | 30.0% | |
| TCAACATTATACTTCATACC+AGG | + | chr1.4:11346333-11346352 | None:intergenic | 30.0% | |
| TGAGAGTAATTCTGTAGATA+AGG | + | chr1.4:11342937-11342956 | None:intergenic | 30.0% | |
| TGTCTTCTTATTCCTATATC+TGG | + | chr1.4:11345979-11345998 | None:intergenic | 30.0% | |
| TTGTTTGTATAACAGACTCT+TGG | - | chr1.4:11345864-11345883 | MS.gene021465:intron | 30.0% | |
| TTTGCAAATACTAATACTCC+TGG | - | chr1.4:11346312-11346331 | MS.gene021465:intron | 30.0% | |
| ! | AAAACTAGTTTGTAAGGTGA+GGG | + | chr1.4:11345622-11345641 | None:intergenic | 30.0% |
| ! | AACTTTTCGTACAAGCAAAA+TGG | + | chr1.4:11344119-11344138 | None:intergenic | 30.0% |
| ! | AAGTACTTAAAAGCATGCAA+GGG | + | chr1.4:11346566-11346585 | None:intergenic | 30.0% |
| ! | AATCATTGCTTCAACTTTTG+AGG | - | chr1.4:11346463-11346482 | MS.gene021465:intron | 30.0% |
| ! | CTCTTTGATAATAGTACATC+AGG | + | chr1.4:11345307-11345326 | None:intergenic | 30.0% |
| ! | GAAATTTGAGTTCAATGGAT+TGG | - | chr1.4:11345338-11345357 | MS.gene021465:intron | 30.0% |
| ! | GGAGTATTAGTATTTGCAAA+TGG | + | chr1.4:11346312-11346331 | None:intergenic | 30.0% |
| ! | GTTTTCACTTTAACTGTGTA+AGG | - | chr1.4:11344717-11344736 | MS.gene021465:intron | 30.0% |
| ! | TTCAGGAAATTTGAGTTCAA+TGG | - | chr1.4:11345333-11345352 | MS.gene021465:intron | 30.0% |
| !! | ATCTGGAAAAGTGTTACAAA+AGG | - | chr1.4:11343644-11343663 | MS.gene021465:intron | 30.0% |
| !! | ATTGATTTTAACGCGGTTTA+TGG | - | chr1.4:11345406-11345425 | MS.gene021465:intron | 30.0% |
| !!! | AGATTTTTTTGGGTGAAGTA+TGG | - | chr1.4:11344287-11344306 | MS.gene021465:CDS | 30.0% |
| !!! | GATTTTTTTGGGTGAAGTAT+GGG | - | chr1.4:11344288-11344307 | MS.gene021465:CDS | 30.0% |
| !!! | GTAATCATGCTTGCTATTTT+TGG | - | chr1.4:11343932-11343951 | MS.gene021465:intron | 30.0% |
| AAAAAACTGCATCAGTAGCA+AGG | - | chr1.4:11346534-11346553 | MS.gene021465:intron | 35.0% | |
| AACTACTGCAGAAAATTCTC+GGG | + | chr1.4:11344483-11344502 | None:intergenic | 35.0% | |
| AAGAAGACAAGGAGAAACTT+TGG | - | chr1.4:11345990-11346009 | MS.gene021465:intron | 35.0% | |
| AAGGAGAGGTTTATTGAAGA+AGG | - | chr1.4:11343791-11343810 | MS.gene021465:CDS | 35.0% | |
| AATCAATTCCAGGGAAATCA+AGG | + | chr1.4:11345393-11345412 | None:intergenic | 35.0% | |
| AATTCCATTGAACCTTGACA+TGG | + | chr1.4:11344389-11344408 | None:intergenic | 35.0% | |
| AATTTGAAAGCTGACAGCAT+AGG | - | chr1.4:11346189-11346208 | MS.gene021465:intron | 35.0% | |
| ACATCGCATATGATTGAACA+AGG | + | chr1.4:11344964-11344983 | None:intergenic | 35.0% | |
| AGAAAGAGGTGATTCTATAG+CGG | + | chr1.4:11345215-11345234 | None:intergenic | 35.0% | |
| AGAAGACAAGGAGAAACTTT+GGG | - | chr1.4:11345991-11346010 | MS.gene021465:intron | 35.0% | |
| AGACATTAATTCAGTCCAGA+AGG | + | chr1.4:11344213-11344232 | None:intergenic | 35.0% | |
| ATACTTGCTTCTCTTACATC+AGG | + | chr1.4:11346141-11346160 | None:intergenic | 35.0% | |
| ATCAAGCAAATGCAGTTCAA+AGG | + | chr1.4:11343131-11343150 | None:intergenic | 35.0% | |
| ATGTTGATGTATCTAGACTC+GGG | - | chr1.4:11345677-11345696 | MS.gene021465:intron | 35.0% | |
| CTCTCTTTGTAAAATGGTTG+AGG | - | chr1.4:11344598-11344617 | MS.gene021465:CDS | 35.0% | |
| CTCTGCATTAAAACACAGTA+AGG | + | chr1.4:11344938-11344957 | None:intergenic | 35.0% | |
| GCTGTCAGCTTTCAAATTAA+TGG | + | chr1.4:11346187-11346206 | None:intergenic | 35.0% | |
| GTGTCACAGGTTATTTGAAT+TGG | + | chr1.4:11344346-11344365 | None:intergenic | 35.0% | |
| TACTTGCTTCTCTTACATCA+GGG | + | chr1.4:11346140-11346159 | None:intergenic | 35.0% | |
| TCAATAAACCTCTCCTTAGT+GGG | + | chr1.4:11343788-11343807 | None:intergenic | 35.0% | |
| TCATAAGTCCAATGCTTCAA+TGG | - | chr1.4:11342990-11343009 | MS.gene021465:intron | 35.0% | |
| TGCATAATGCAGTTATTGCA+GGG | - | chr1.4:11346283-11346302 | MS.gene021465:intron | 35.0% | |
| TTCAATAAACCTCTCCTTAG+TGG | + | chr1.4:11343789-11343808 | None:intergenic | 35.0% | |
| TTTGAACTGCATTTGCTTGA+TGG | - | chr1.4:11343130-11343149 | MS.gene021465:intron | 35.0% | |
| ! | AAACTAGTTTGTAAGGTGAG+GGG | + | chr1.4:11345621-11345640 | None:intergenic | 35.0% |
| ! | AAACTTTGGGAGGAAAATCA+AGG | - | chr1.4:11346004-11346023 | MS.gene021465:intron | 35.0% |
| ! | AACAAACTCGTCCATTGATT+TGG | - | chr1.4:11346237-11346256 | MS.gene021465:intron | 35.0% |
| ! | CAAAACTAGTTTGTAAGGTG+AGG | + | chr1.4:11345623-11345642 | None:intergenic | 35.0% |
| ! | GAAGTACTTAAAAGCATGCA+AGG | + | chr1.4:11346567-11346586 | None:intergenic | 35.0% |
| ! | GAATGATACCGAGTTTTCAT+AGG | + | chr1.4:11344550-11344569 | None:intergenic | 35.0% |
| ! | TGGCCTTAACAATTACTTGA+TGG | - | chr1.4:11344672-11344691 | MS.gene021465:CDS | 35.0% |
| ! | TTAAAAGCATGCAAGGGATT+AGG | + | chr1.4:11346560-11346579 | None:intergenic | 35.0% |
| ! | TTGGATTAGATAGTCGAGAT+CGG | - | chr1.4:11346256-11346275 | MS.gene021465:intron | 35.0% |
| !! | CTAGAGTTAGCTTTAATTGC+TGG | - | chr1.4:11343621-11343640 | MS.gene021465:intron | 35.0% |
| !! | TTAGCTTTAATTGCTGGATC+TGG | - | chr1.4:11343627-11343646 | MS.gene021465:intron | 35.0% |
| !! | TTATCAAAGAGTGTCAGTTC+AGG | - | chr1.4:11345316-11345335 | MS.gene021465:intron | 35.0% |
| !!! | TAGTTTTGTAAGAATGAGCC+AGG | - | chr1.4:11345635-11345654 | MS.gene021465:intron | 35.0% |
| ACCGCGTTAAAATCAATTCC+AGG | + | chr1.4:11345403-11345422 | None:intergenic | 40.0% | |
| AGAAGCTTTGCGTAAACGAA+AGG | + | chr1.4:11344422-11344441 | None:intergenic | 40.0% | |
| AGACACTTAGCTACTCATTG+AGG | + | chr1.4:11346434-11346453 | None:intergenic | 40.0% | |
| AGTAATAGTCCAGTTCCTTC+TGG | - | chr1.4:11344195-11344214 | MS.gene021465:intron | 40.0% | |
| AGTCATACTCAAAGCACAAG+TGG | - | chr1.4:11343592-11343611 | MS.gene021465:intron | 40.0% | |
| ATCGTGTCAAAGGCTGAAAA+TGG | + | chr1.4:11346637-11346656 | None:intergenic | 40.0% | |
| ATTTGATCAAGGTCCATCTC+CGG | + | chr1.4:11345049-11345068 | None:intergenic | 40.0% | |
| CAATAAACCTCTCCTTAGTG+GGG | + | chr1.4:11343787-11343806 | None:intergenic | 40.0% | |
| CATGGTTTCAGTATGCTTGT+AGG | - | chr1.4:11346683-11346702 | MS.gene021465:CDS | 40.0% | |
| CATTGAACCTTGACATGGAA+AGG | + | chr1.4:11344384-11344403 | None:intergenic | 40.0% | |
| CCGCGTTAAAATCAATTCCA+GGG | + | chr1.4:11345402-11345421 | None:intergenic | 40.0% | |
| CGAGACGATTATTGAAGAAC+CGG | - | chr1.4:11345027-11345046 | MS.gene021465:intron | 40.0% | |
| CGGTTCTTCAATAATCGTCT+CGG | + | chr1.4:11345029-11345048 | None:intergenic | 40.0% | |
| CGTTGAGAAGAGATAAGACT+TGG | - | chr1.4:11345573-11345592 | MS.gene021465:intron | 40.0% | |
| CTGCATAATGCAGTTATTGC+AGG | - | chr1.4:11346282-11346301 | MS.gene021465:intron | 40.0% | |
| CTTTCCATGTCAAGGTTCAA+TGG | - | chr1.4:11344382-11344401 | MS.gene021465:CDS | 40.0% | |
| GAGCAGGAATCTTGATTTCA+AGG | + | chr1.4:11345243-11345262 | None:intergenic | 40.0% | |
| GATTAATCCAACGACTGATC+AGG | - | chr1.4:11344058-11344077 | MS.gene021465:intron | 40.0% | |
| GATTATTGAAGAACCGGAGA+TGG | - | chr1.4:11345033-11345052 | MS.gene021465:intron | 40.0% | |
| GGTTCTTCAATAATCGTCTC+GGG | + | chr1.4:11345028-11345047 | None:intergenic | 40.0% | |
| GTATAACAGACTCTTGGCAA+TGG | - | chr1.4:11345870-11345889 | MS.gene021465:intron | 40.0% | |
| GTCTTATCTCTTCTCAACGT+GGG | + | chr1.4:11345572-11345591 | None:intergenic | 40.0% | |
| GTTGAAGTGTGAACTCATAG+TGG | - | chr1.4:11343745-11343764 | MS.gene021465:CDS | 40.0% | |
| GTTTCAGTATGCTTGTAGGA+AGG | - | chr1.4:11346687-11346706 | MS.gene021465:CDS | 40.0% | |
| TAATTCAGTCCAGAAGGAAC+TGG | + | chr1.4:11344207-11344226 | None:intergenic | 40.0% | |
| TACAAGCAAAATGGAACCCT+AGG | + | chr1.4:11344110-11344129 | None:intergenic | 40.0% | |
| TTCGTGTTTACTGAGTAACG+CGG | + | chr1.4:11344765-11344784 | None:intergenic | 40.0% | |
| TTCTCTTACATCAGGGAATC+CGG | + | chr1.4:11346133-11346152 | None:intergenic | 40.0% | |
| ! | AGTCTTATCTCTTCTCAACG+TGG | + | chr1.4:11345573-11345592 | None:intergenic | 40.0% |
| !! | AAGCGAACAACTTTTGAGTG+AGG | - | chr1.4:11345153-11345172 | MS.gene021465:intron | 40.0% |
| !! | AGTTCAATGGATTGGATGCA+TGG | - | chr1.4:11345346-11345365 | MS.gene021465:intron | 40.0% |
| !! | ATGCGAAGAGCATTTAGTGA+AGG | - | chr1.4:11345430-11345449 | MS.gene021465:intron | 40.0% |
| !! | CCCTGGAATTGATTTTAACG+CGG | - | chr1.4:11345399-11345418 | MS.gene021465:intron | 40.0% |
| AGAAGCTGCATAAGCAACCT+AGG | - | chr1.4:11344090-11344109 | MS.gene021465:intron | 45.0% | |
| AGACAAGGAGAAACTTTGGG+AGG | - | chr1.4:11345994-11346013 | MS.gene021465:intron | 45.0% | |
| AGCTCTTCCTTTCCATGTCA+AGG | - | chr1.4:11344374-11344393 | MS.gene021465:CDS | 45.0% | |
| ATCTAACTTCAAAGTGCGGC+TGG | + | chr1.4:11344001-11344020 | None:intergenic | 45.0% | |
| CATGTCAATGATGTCTGGTG+GGG | - | chr1.4:11345078-11345097 | MS.gene021465:intron | 45.0% | |
| CCATGTCAATGATGTCTGGT+GGG | - | chr1.4:11345077-11345096 | MS.gene021465:intron | 45.0% | |
| CCGTGGAAGATTTGCGAAAA+CGG | - | chr1.4:11346735-11346754 | MS.gene021465:CDS | 45.0% | |
| CGGAGGAGTTAGATATCAAG+AGG | - | chr1.4:11346755-11346774 | MS.gene021465:CDS | 45.0% | |
| GAAGCTGCATAAGCAACCTA+GGG | - | chr1.4:11344091-11344110 | MS.gene021465:intron | 45.0% | |
| GCAAATCTTCCACGGATTCT+TGG | + | chr1.4:11346730-11346749 | None:intergenic | 45.0% | |
| GGCAATGGTAACATGAGTGT+TGG | - | chr1.4:11345885-11345904 | MS.gene021465:intron | 45.0% | |
| GGTTGAGGAACAACCTCTAT+TGG | - | chr1.4:11344613-11344632 | MS.gene021465:CDS | 45.0% | |
| GTGCAGTTGCTGAGAAGAAA+AGG | + | chr1.4:11345930-11345949 | None:intergenic | 45.0% | |
| TCAGCCATCAACCAACAGTT+GGG | - | chr1.4:11344251-11344270 | MS.gene021465:CDS | 45.0% | |
| TGAGTTCGGAATCGTGTCAA+AGG | + | chr1.4:11346647-11346666 | None:intergenic | 45.0% | |
| TGGAAGATTTGCGAAAACGG+AGG | - | chr1.4:11346738-11346757 | MS.gene021465:CDS | 45.0% | |
| TGGCTGCTTGCATTTGATCA+AGG | + | chr1.4:11345060-11345079 | None:intergenic | 45.0% | |
| TTCAGCCATCAACCAACAGT+TGG | - | chr1.4:11344250-11344269 | MS.gene021465:CDS | 45.0% | |
| TTCTCGTCAATGTTCAGAGC+AGG | + | chr1.4:11345259-11345278 | None:intergenic | 45.0% | |
| ! | AAGAAAAGGCCTCTCTAGAG+TGG | + | chr1.4:11345916-11345935 | None:intergenic | 45.0% |
| ! | CCGTTTTCGCAAATCTTCCA+CGG | + | chr1.4:11346738-11346757 | None:intergenic | 45.0% |
| ! | CTTTGAAAGAGCCCAACTGT+TGG | + | chr1.4:11344265-11344284 | None:intergenic | 45.0% |
| ! | GTCGCAGGGTCTAAAATCTT+CGG | - | chr1.4:11345111-11345130 | MS.gene021465:intron | 45.0% |
| ! | TGTCTAAGACAAAGAGGCCA+TGG | - | chr1.4:11345761-11345780 | MS.gene021465:intron | 45.0% |
| ! | TGTCTTTTTCTGCCCCACTA+AGG | - | chr1.4:11343772-11343791 | MS.gene021465:CDS | 45.0% |
| !! | AGAGGGTACCATTGAAGCAT+TGG | + | chr1.4:11343001-11343020 | None:intergenic | 45.0% |
| !!! | AACATATTAAATTTTTATAT+TGG | + | chr1.4:11345662-11345681 | None:intergenic | 5.0% |
| ACTGAGTAACGCGGATGAGT+TGG | + | chr1.4:11344756-11344775 | None:intergenic | 50.0% | |
| AGGAAAGCAGGCTTCATTGC+AGG | + | chr1.4:11345373-11345392 | None:intergenic | 50.0% | |
| ATCCAACGACTGATCAGGTG+CGG | - | chr1.4:11344063-11344082 | MS.gene021465:intron | 50.0% | |
| CCAGGGAAATCAAGGAAAGC+AGG | + | chr1.4:11345385-11345404 | None:intergenic | 50.0% | |
| CCCACCAGACATCATTGACA+TGG | + | chr1.4:11345080-11345099 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGATTTCCC+TGG | - | chr1.4:11345382-11345401 | MS.gene021465:intron | 50.0% | |
| CTGAGTAACGCGGATGAGTT+GGG | + | chr1.4:11344755-11344774 | None:intergenic | 50.0% | |
| GACAGTCAACCAAGAATCCG+TGG | - | chr1.4:11346718-11346737 | MS.gene021465:CDS | 50.0% | |
| GAGCTGAGTAGTAGTGTCAC+AGG | + | chr1.4:11344359-11344378 | None:intergenic | 50.0% | |
| GCAGCCATGTCAATGATGTC+TGG | - | chr1.4:11345073-11345092 | MS.gene021465:intron | 50.0% | |
| GCCATGTCAATGATGTCTGG+TGG | - | chr1.4:11345076-11345095 | MS.gene021465:intron | 50.0% | |
| ! | AGAGCCCAACTGTTGGTTGA+TGG | + | chr1.4:11344258-11344277 | None:intergenic | 50.0% |
| ! | TTGGCCAATCCACTCTAGAG+AGG | - | chr1.4:11345904-11345923 | MS.gene021465:intron | 50.0% |
| ! | TTTTCTGCCCCACTAAGGAG+AGG | - | chr1.4:11343777-11343796 | MS.gene021465:CDS | 50.0% |
| !! | AAGGCCTCTCTAGAGTGGAT+TGG | + | chr1.4:11345911-11345930 | None:intergenic | 50.0% |
| AACCGCACCTGATCAGTCGT+TGG | + | chr1.4:11344068-11344087 | None:intergenic | 55.0% | |
| ACTTCAAAGTGCGGCTGGAG+AGG | + | chr1.4:11343996-11344015 | None:intergenic | 55.0% | |
| GTCCTCTTTAGCGCTGCACA+CGG | - | chr1.4:11345699-11345718 | MS.gene021465:intron | 55.0% | |
| TTAGCGCTGCACACGGTGAA+CGG | - | chr1.4:11345706-11345725 | MS.gene021465:intron | 55.0% | |
| ! | GCGGATGAGTTGGGCTACAT+GGG | + | chr1.4:11344746-11344765 | None:intergenic | 55.0% |
| CACCGTGTGCAGCGCTAAAG+AGG | + | chr1.4:11345704-11345723 | None:intergenic | 60.0% | |
| GGGGAAGACATGTCGTCGCA+GGG | - | chr1.4:11345097-11345116 | MS.gene021465:intron | 60.0% | |
| TGGGGAAGACATGTCGTCGC+AGG | - | chr1.4:11345096-11345115 | MS.gene021465:intron | 60.0% | |
| ! | CGCGGATGAGTTGGGCTACA+TGG | + | chr1.4:11344747-11344766 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 11342907 | 11346783 | 11342907 | ID=MS.gene021465 |
| chr1.4 | mRNA | 11342907 | 11346783 | 11342907 | ID=MS.gene021465.t1;Parent=MS.gene021465 |
| chr1.4 | exon | 11346679 | 11346783 | 11346679 | ID=MS.gene021465.t1.exon1;Parent=MS.gene021465.t1 |
| chr1.4 | CDS | 11346679 | 11346783 | 11346679 | ID=cds.MS.gene021465.t1;Parent=MS.gene021465.t1 |
| chr1.4 | exon | 11344228 | 11344734 | 11344228 | ID=MS.gene021465.t1.exon2;Parent=MS.gene021465.t1 |
| chr1.4 | CDS | 11344228 | 11344734 | 11344228 | ID=cds.MS.gene021465.t1;Parent=MS.gene021465.t1 |
| chr1.4 | exon | 11343665 | 11343811 | 11343665 | ID=MS.gene021465.t1.exon3;Parent=MS.gene021465.t1 |
| chr1.4 | CDS | 11343665 | 11343811 | 11343665 | ID=cds.MS.gene021465.t1;Parent=MS.gene021465.t1 |
| chr1.4 | exon | 11342907 | 11342996 | 11342907 | ID=MS.gene021465.t1.exon4;Parent=MS.gene021465.t1 |
| chr1.4 | CDS | 11342907 | 11342996 | 11342907 | ID=cds.MS.gene021465.t1;Parent=MS.gene021465.t1 |
| Gene Sequence |
| Protein sequence |
