Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56038.t1 | XP_003588527.1 | 97.9 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 1.20E-148 | 535.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56038.t1 | Q9FHH8 | 43.2 | 74 | 40 | 1 | 207 | 278 | 258 | 331 | 3.3e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56038.t1 | G7I4B0 | 97.9 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 8.7e-149 | 535.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56038.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059145 | MS.gene56038 | 0.953851 | 1.10E-111 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021465 | MS.gene56038 | PPI |
| MS.gene56038 | MS.gene013601 | PPI |
| MS.gene06938 | MS.gene56038 | PPI |
| MS.gene059145 | MS.gene56038 | PPI |
| MS.gene06720 | MS.gene56038 | PPI |
| MS.gene013601 | MS.gene56038 | PPI |
| MS.gene31626 | MS.gene56038 | PPI |
| MS.gene56037 | MS.gene56038 | PPI |
| MS.gene021464 | MS.gene56038 | PPI |
| MS.gene56038 | MS.gene06720 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56038.t1 | MTR_1g008220 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 573 |
| MS.gene56038.t1 | MTR_1g008220 | 98.419 | 253 | 4 | 0 | 1 | 253 | 1 | 253 | 0.0 | 514 |
| MS.gene56038.t1 | MTR_3g091340 | 72.695 | 282 | 67 | 5 | 1 | 278 | 1 | 276 | 5.69e-135 | 383 |
| MS.gene56038.t1 | MTR_3g091340 | 74.390 | 246 | 55 | 4 | 35 | 278 | 1 | 240 | 7.09e-119 | 340 |
| MS.gene56038.t1 | MTR_3g091340 | 74.286 | 245 | 55 | 4 | 36 | 278 | 9 | 247 | 4.67e-118 | 339 |
| MS.gene56038.t1 | MTR_8g098725 | 48.235 | 85 | 42 | 1 | 194 | 276 | 185 | 269 | 6.20e-21 | 90.9 |
| MS.gene56038.t1 | MTR_8g098725 | 47.191 | 89 | 41 | 2 | 194 | 276 | 185 | 273 | 2.10e-19 | 86.7 |
| MS.gene56038.t1 | MTR_4g061823 | 36.691 | 139 | 71 | 4 | 152 | 277 | 56 | 190 | 3.78e-18 | 82.0 |
| MS.gene56038.t1 | MTR_4g061910 | 36.691 | 139 | 71 | 4 | 152 | 277 | 56 | 190 | 3.78e-18 | 82.0 |
| MS.gene56038.t1 | MTR_5g010120 | 45.882 | 85 | 42 | 1 | 194 | 278 | 139 | 219 | 2.52e-17 | 79.7 |
| MS.gene56038.t1 | MTR_1g044785 | 35.172 | 145 | 76 | 4 | 150 | 277 | 36 | 179 | 4.56e-17 | 78.6 |
| MS.gene56038.t1 | MTR_1g073350 | 36.296 | 135 | 69 | 4 | 159 | 277 | 228 | 361 | 1.93e-16 | 79.0 |
| MS.gene56038.t1 | MTR_2g096080 | 33.813 | 139 | 76 | 4 | 154 | 280 | 69 | 203 | 2.00e-16 | 77.4 |
| MS.gene56038.t1 | MTR_2g068730 | 53.061 | 49 | 23 | 0 | 228 | 276 | 159 | 207 | 1.56e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56038.t1 | AT5G53420 | 50.896 | 279 | 117 | 9 | 1 | 276 | 1 | 262 | 9.63e-85 | 255 |
| MS.gene56038.t1 | AT4G27900 | 50.534 | 281 | 113 | 7 | 1 | 277 | 1 | 259 | 9.15e-83 | 249 |
| MS.gene56038.t1 | AT4G27900 | 50.534 | 281 | 113 | 7 | 1 | 277 | 1 | 259 | 9.15e-83 | 249 |
| MS.gene56038.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 79 | 276 | 1 | 183 | 3.17e-64 | 200 |
| MS.gene56038.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 79 | 276 | 1 | 183 | 3.17e-64 | 200 |
| MS.gene56038.t1 | AT5G53420 | 55.779 | 199 | 71 | 7 | 79 | 276 | 1 | 183 | 3.17e-64 | 200 |
| MS.gene56038.t1 | AT5G53420 | 42.381 | 210 | 108 | 6 | 1 | 208 | 1 | 199 | 6.71e-46 | 154 |
| MS.gene56038.t1 | AT5G41380 | 46.316 | 95 | 45 | 2 | 189 | 277 | 166 | 260 | 1.15e-19 | 87.4 |
| MS.gene56038.t1 | AT1G63820 | 41.584 | 101 | 40 | 2 | 194 | 277 | 139 | 237 | 8.04e-19 | 84.7 |
| MS.gene56038.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 184 | 277 | 238 | 355 | 5.57e-17 | 80.5 |
| MS.gene56038.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 184 | 277 | 227 | 344 | 8.05e-17 | 80.1 |
| MS.gene56038.t1 | AT2G33350 | 39.831 | 118 | 47 | 3 | 184 | 277 | 247 | 364 | 8.31e-17 | 80.1 |
| MS.gene56038.t1 | AT1G04500 | 37.209 | 129 | 75 | 3 | 149 | 277 | 211 | 333 | 1.49e-16 | 79.3 |
| MS.gene56038.t1 | AT1G04500 | 37.209 | 129 | 75 | 3 | 149 | 277 | 211 | 333 | 1.49e-16 | 79.3 |
| MS.gene56038.t1 | AT1G04500 | 37.209 | 129 | 75 | 3 | 149 | 277 | 202 | 324 | 1.74e-16 | 79.0 |
| MS.gene56038.t1 | AT2G33350 | 56.452 | 62 | 24 | 1 | 216 | 277 | 298 | 356 | 6.08e-16 | 77.8 |
| MS.gene56038.t1 | AT5G59990 | 59.091 | 44 | 18 | 0 | 239 | 282 | 170 | 213 | 1.27e-11 | 63.5 |
Find 59 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCTTATTCCTATATC+TGG | 0.246824 | 1.3:+11581069 | None:intergenic |
| TTCAGGAAATTTGAGTTCAA+TGG | 0.350069 | 1.3:-11581712 | MS.gene56038:CDS |
| GCAAATCTTCCACGGATTCT+TGG | 0.350555 | 1.3:+11580318 | None:intergenic |
| GATAATAGTACATCAGGAAT+TGG | 0.361584 | 1.3:+11581747 | None:intergenic |
| CCTGCTTTCCTTGATTTCCC+TGG | 0.370726 | 1.3:-11581663 | MS.gene56038:CDS |
| CCGTGGAAGATTTGCGAAAA+CGG | 0.381688 | 1.3:-11580310 | MS.gene56038:CDS |
| AAGAAGACAAGGAGAAACTT+TGG | 0.387483 | 1.3:-11581055 | MS.gene56038:CDS |
| CATGGTTTCAGTATGCTTGT+AGG | 0.397320 | 1.3:-11580362 | MS.gene56038:intron |
| AGGAAAGCAGGCTTCATTGC+AGG | 0.402149 | 1.3:+11581675 | None:intergenic |
| ACCGCGTTAAAATCAATTCC+AGG | 0.422111 | 1.3:+11581645 | None:intergenic |
| GAAATTTGAGTTCAATGGAT+TGG | 0.431971 | 1.3:-11581707 | MS.gene56038:CDS |
| TTATCAAAGAGTGTCAGTTC+AGG | 0.440427 | 1.3:-11581729 | MS.gene56038:CDS |
| GAGCAGGAATCTTGATTTCA+AGG | 0.444374 | 1.3:+11581805 | None:intergenic |
| CTCTTTGATAATAGTACATC+AGG | 0.447091 | 1.3:+11581741 | None:intergenic |
| TGAGAGTAATTCTGTAGATA+AGG | 0.454318 | 1.3:+11584109 | None:intergenic |
| AGAAGACAAGGAGAAACTTT+GGG | 0.461172 | 1.3:-11581054 | MS.gene56038:CDS |
| GTGCAGTTGCTGAGAAGAAA+AGG | 0.470162 | 1.3:+11581118 | None:intergenic |
| AATCAATTCCAGGGAAATCA+AGG | 0.470610 | 1.3:+11581655 | None:intergenic |
| TGGGGAAGACATGTCGTCGC+AGG | 0.471749 | 1.3:-11581949 | MS.gene56038:CDS |
| ATTTAGTGAAGGAGATATAA+AGG | 0.474162 | 1.3:-11581604 | MS.gene56038:intron |
| TCATAAGTCCAATGCTTCAA+TGG | 0.475058 | 1.3:-11584053 | MS.gene56038:intron |
| GAGAGTAATTCTGTAGATAA+GGG | 0.476998 | 1.3:+11584110 | None:intergenic |
| CGGTTCTTCAATAATCGTCT+CGG | 0.477444 | 1.3:+11582019 | None:intergenic |
| CGAGACGATTATTGAAGAAC+CGG | 0.482715 | 1.3:-11582018 | MS.gene56038:CDS |
| TGGCTGCTTGCATTTGATCA+AGG | 0.489809 | 1.3:+11581988 | None:intergenic |
| GTCGCAGGGTCTAAAATCTT+CGG | 0.499847 | 1.3:-11581934 | MS.gene56038:CDS |
| AGAGGGTACCATTGAAGCAT+TGG | 0.503291 | 1.3:+11584045 | None:intergenic |
| TTGTTTGTATAACAGACTCT+TGG | 0.509295 | 1.3:-11581181 | MS.gene56038:intron |
| AGAATTTGATTTATTTGTAG+AGG | 0.514069 | 1.3:-11582060 | MS.gene56038:CDS |
| TTCTCGTCAATGTTCAGAGC+AGG | 0.527138 | 1.3:+11581789 | None:intergenic |
| ATTTGATCAAGGTCCATCTC+CGG | 0.536269 | 1.3:+11581999 | None:intergenic |
| CCAGGGAAATCAAGGAAAGC+AGG | 0.538494 | 1.3:+11581663 | None:intergenic |
| GAATTTGATTTATTTGTAGA+GGG | 0.539422 | 1.3:-11582059 | MS.gene56038:CDS |
| AGTTCAATGGATTGGATGCA+TGG | 0.542974 | 1.3:-11581699 | MS.gene56038:CDS |
| ATTTCAAGGATTTCAGAAAG+AGG | 0.543254 | 1.3:+11581819 | None:intergenic |
| GCAGCCATGTCAATGATGTC+TGG | 0.545025 | 1.3:-11581972 | MS.gene56038:CDS |
| GATTATTGAAGAACCGGAGA+TGG | 0.549985 | 1.3:-11582012 | MS.gene56038:CDS |
| GGTTCTTCAATAATCGTCTC+GGG | 0.551243 | 1.3:+11582020 | None:intergenic |
| CCGCGTTAAAATCAATTCCA+GGG | 0.559154 | 1.3:+11581646 | None:intergenic |
| AAGGCCTCTCTAGAGTGGAT+TGG | 0.563933 | 1.3:+11581137 | None:intergenic |
| AAACTTTGGGAGGAAAATCA+AGG | 0.564099 | 1.3:-11581041 | MS.gene56038:intron |
| GGGGAAGACATGTCGTCGCA+GGG | 0.576526 | 1.3:-11581948 | MS.gene56038:CDS |
| AAGAAAAGGCCTCTCTAGAG+TGG | 0.578670 | 1.3:+11581132 | None:intergenic |
| CGGAGGAGTTAGATATCAAG+AGG | 0.594972 | 1.3:-11580290 | MS.gene56038:CDS |
| CCATGTCAATGATGTCTGGT+GGG | 0.605089 | 1.3:-11581968 | MS.gene56038:CDS |
| GTTTCAGTATGCTTGTAGGA+AGG | 0.605930 | 1.3:-11580358 | MS.gene56038:intron |
| GTATAACAGACTCTTGGCAA+TGG | 0.606169 | 1.3:-11581175 | MS.gene56038:intron |
| GACAGTCAACCAAGAATCCG+TGG | 0.616160 | 1.3:-11580327 | MS.gene56038:CDS |
| GGCAATGGTAACATGAGTGT+TGG | 0.622717 | 1.3:-11581160 | MS.gene56038:CDS |
| CCCACCAGACATCATTGACA+TGG | 0.626711 | 1.3:+11581968 | None:intergenic |
| GCCATGTCAATGATGTCTGG+TGG | 0.631276 | 1.3:-11581969 | MS.gene56038:CDS |
| GATATAGGAATAAGAAGACA+AGG | 0.632233 | 1.3:-11581066 | MS.gene56038:CDS |
| ATGCGAAGAGCATTTAGTGA+AGG | 0.636958 | 1.3:-11581615 | MS.gene56038:CDS |
| AGAAAGAGGTGATTCTATAG+CGG | 0.645696 | 1.3:+11581833 | None:intergenic |
| TTGGCCAATCCACTCTAGAG+AGG | 0.651640 | 1.3:-11581141 | MS.gene56038:CDS |
| TGGAAGATTTGCGAAAACGG+AGG | 0.654676 | 1.3:-11580307 | MS.gene56038:CDS |
| ACATCGCATATGATTGAACA+AGG | 0.660417 | 1.3:+11582084 | None:intergenic |
| CATGTCAATGATGTCTGGTG+GGG | 0.675165 | 1.3:-11581967 | MS.gene56038:CDS |
| AGACAAGGAGAAACTTTGGG+AGG | 0.688525 | 1.3:-11581051 | MS.gene56038:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAATACTAATATTTAAA+AGG | - | chr1.3:11582197-11582216 | MS.gene56038:intron | 10.0% |
| !! | TATAAATTAAATAACATCTA+TGG | - | chr1.3:11582877-11582896 | MS.gene56038:intron | 10.0% |
| !!! | TTAATTTTTCTTCAATTTTA+TGG | - | chr1.3:11581098-11581117 | MS.gene56038:CDS | 10.0% |
| !! | AAAAATTGATTAAGTTCATA+AGG | - | chr1.3:11580897-11580916 | MS.gene56038:intron | 15.0% |
| !! | AATATTATTACCAAGAAAAA+AGG | + | chr1.3:11581211-11581230 | None:intergenic | 15.0% |
| !! | ATAAAAAATATCACAGAAAT+TGG | + | chr1.3:11580425-11580444 | None:intergenic | 15.0% |
| !! | ATATTATTACCAAGAAAAAA+GGG | + | chr1.3:11581210-11581229 | None:intergenic | 15.0% |
| !! | TAAATATATAGTTACAAAAG+AGG | - | chr1.3:11581287-11581306 | MS.gene56038:intron | 15.0% |
| !! | TTAAACATTATATGTTGTAT+TGG | - | chr1.3:11582908-11582927 | MS.gene56038:intron | 15.0% |
| !! | TTGAAGTTAGATTAATTTAA+CGG | - | chr1.3:11581386-11581405 | MS.gene56038:intron | 15.0% |
| !!! | ATATTTCTTAATAGTTTTCT+AGG | - | chr1.3:11580602-11580621 | MS.gene56038:intron | 15.0% |
| !!! | ATATTTTCTTTATGAGTATA+TGG | - | chr1.3:11580823-11580842 | MS.gene56038:intron | 15.0% |
| !!! | TAATTTTAATCATATGTGAT+TGG | - | chr1.3:11580766-11580785 | MS.gene56038:intron | 15.0% |
| !!! | TTATGATACTTTTCTATTAT+TGG | - | chr1.3:11582230-11582249 | MS.gene56038:intron | 15.0% |
| !! | AAATGAATTTAAGAAAGTCT+TGG | + | chr1.3:11583751-11583770 | None:intergenic | 20.0% |
| !! | AATTCTCAATAGTTAGTTAA+TGG | - | chr1.3:11582163-11582182 | MS.gene56038:intron | 20.0% |
| !! | ACATATAATGTTTAACAAAG+TGG | + | chr1.3:11582903-11582922 | None:intergenic | 20.0% |
| !! | ATTATGTACATAATTAGTTG+AGG | + | chr1.3:11580666-11580685 | None:intergenic | 20.0% |
| !! | TATAAATTAAGTAACATCCA+TGG | + | chr1.3:11583156-11583175 | None:intergenic | 20.0% |
| !! | TCTATGTATCTATCTATATA+TGG | - | chr1.3:11580731-11580750 | MS.gene56038:intron | 20.0% |
| !! | TGAAGAAAAATTAAAGAACA+CGG | + | chr1.3:11581092-11581111 | None:intergenic | 20.0% |
| !! | TTCATAAAAGAAGAAAGTTA+TGG | - | chr1.3:11581531-11581550 | MS.gene56038:intron | 20.0% |
| !! | TTGCATCTCATTAAATATTA+AGG | - | chr1.3:11583480-11583499 | MS.gene56038:intron | 20.0% |
| !!! | ACATTATTAGAATTTGAGTT+CGG | + | chr1.3:11584036-11584055 | None:intergenic | 20.0% |
| !!! | AGAATTTGATTTATTTGTAG+AGG | - | chr1.3:11582360-11582379 | MS.gene56038:intron | 20.0% |
| !!! | CACATGTTAATAATTCATTT+TGG | - | chr1.3:11581249-11581268 | MS.gene56038:intron | 20.0% |
| !!! | GAATTTGATTTATTTGTAGA+GGG | - | chr1.3:11582361-11582380 | MS.gene56038:intron | 20.0% |
| !!! | TCTTGGTAATAATATTGAAA+AGG | - | chr1.3:11581215-11581234 | MS.gene56038:intron | 20.0% |
| !!! | TTAAATTTTTATATTGGACC+TGG | + | chr1.3:11583031-11583050 | None:intergenic | 20.0% |
| !!! | TTTCAAAGTCAGATTTTTTT+GGG | - | chr1.3:11581654-11581673 | MS.gene56038:CDS | 20.0% |
| !!! | TTTTATGAATACACAAAACA+CGG | + | chr1.3:11581520-11581539 | None:intergenic | 20.0% |
| ! | AAAATTTCAAAAGATGTGTG+AGG | + | chr1.3:11583455-11583474 | None:intergenic | 25.0% |
| ! | AAGAGAGAAGAAAAAAAAGA+GGG | + | chr1.3:11580395-11580414 | None:intergenic | 25.0% |
| ! | AGATATAAAGGTCAACTTAA+AGG | - | chr1.3:11582828-11582847 | MS.gene56038:intron | 25.0% |
| ! | AGGTTATTTGAATTGGTATT+AGG | + | chr1.3:11581716-11581735 | None:intergenic | 25.0% |
| ! | ATTAATCTAACTTCAAAGTG+CGG | + | chr1.3:11581382-11581401 | None:intergenic | 25.0% |
| ! | ATTCCATCAAGTAATTGTTA+AGG | + | chr1.3:11582052-11582071 | None:intergenic | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | - | chr1.3:11582816-11582835 | MS.gene56038:intron | 25.0% |
| ! | CAAAAAAGATCTCTTAGAAA+AGG | - | chr1.3:11582564-11582583 | MS.gene56038:intron | 25.0% |
| ! | CAAATTCTAATAATGTTGCA+TGG | - | chr1.3:11584040-11584059 | MS.gene56038:intron | 25.0% |
| ! | CTCATTAAATATTAAGGATC+CGG | - | chr1.3:11583486-11583505 | MS.gene56038:intron | 25.0% |
| ! | GGAAATAAAAGTGATTAAGA+TGG | - | chr1.3:11581042-11581061 | MS.gene56038:CDS | 25.0% |
| ! | TTCTATAACCTATGAAAACT+CGG | - | chr1.3:11581916-11581935 | MS.gene56038:CDS | 25.0% |
| ! | TTTGCCATATCAAAATGATT+TGG | - | chr1.3:11583203-11583222 | MS.gene56038:intron | 25.0% |
| !! | ATATAATGTCTAAGACAAAG+AGG | - | chr1.3:11583130-11583149 | MS.gene56038:intron | 25.0% |
| !! | GAAATTTGTAATTTGCATAG+TGG | - | chr1.3:11582026-11582045 | MS.gene56038:CDS | 25.0% |
| !! | TCTTACAAAACTAGTTTGTA+AGG | + | chr1.3:11583003-11583022 | None:intergenic | 25.0% |
| !!! | ATCATTTTGATATGGCAAAT+AGG | + | chr1.3:11583202-11583221 | None:intergenic | 25.0% |
| !!! | CATATTATTCCCTTTTTTCT+TGG | - | chr1.3:11581198-11581217 | MS.gene56038:intron | 25.0% |
| !!! | CTTTCAAAGTCAGATTTTTT+TGG | - | chr1.3:11581653-11581672 | MS.gene56038:CDS | 25.0% |
| !!! | TACACCAAATCATTTTGATA+TGG | + | chr1.3:11583210-11583229 | None:intergenic | 25.0% |
| AAGAAAAACTCTCCAGATAT+AGG | - | chr1.3:11583339-11583358 | MS.gene56038:intron | 30.0% | |
| AATGACAAAAGACATACTAG+GGG | + | chr1.3:11582268-11582287 | None:intergenic | 30.0% | |
| AGAATGACAAAAGACATACT+AGG | + | chr1.3:11582270-11582289 | None:intergenic | 30.0% | |
| ATTTCAAGGATTTCAGAAAG+AGG | + | chr1.3:11582604-11582623 | None:intergenic | 30.0% | |
| CAAGAGAGAAGAAAAAAAAG+AGG | + | chr1.3:11580396-11580415 | None:intergenic | 30.0% | |
| CTTTCTCTCTCTTTGTAAAA+TGG | - | chr1.3:11581966-11581985 | MS.gene56038:CDS | 30.0% | |
| GAAAAGATTTAGACCAATAG+AGG | + | chr1.3:11582003-11582022 | None:intergenic | 30.0% | |
| GAATGACAAAAGACATACTA+GGG | + | chr1.3:11582269-11582288 | None:intergenic | 30.0% | |
| GACTATCTAATCCAAATCAA+TGG | + | chr1.3:11583626-11583645 | None:intergenic | 30.0% | |
| GAGAGTAATTCTGTAGATAA+GGG | + | chr1.3:11580313-11580332 | None:intergenic | 30.0% | |
| GATAATAGTACATCAGGAAT+TGG | + | chr1.3:11582676-11582695 | None:intergenic | 30.0% | |
| GATATAGGAATAAGAAGACA+AGG | - | chr1.3:11583354-11583373 | MS.gene56038:intron | 30.0% | |
| TAAAGTCTTCTATGTTCATG+TGG | + | chr1.3:11583412-11583431 | None:intergenic | 30.0% | |
| TATGTTGATGTATCTAGACT+CGG | - | chr1.3:11583051-11583070 | MS.gene56038:intron | 30.0% | |
| TATTACTCAGCTCAAGAATA+TGG | + | chr1.3:11581559-11581578 | None:intergenic | 30.0% | |
| TCAACATTATACTTCATACC+AGG | + | chr1.3:11583708-11583727 | None:intergenic | 30.0% | |
| TGAGAGTAATTCTGTAGATA+AGG | + | chr1.3:11580314-11580333 | None:intergenic | 30.0% | |
| TGTCTTCTTATTCCTATATC+TGG | + | chr1.3:11583354-11583373 | None:intergenic | 30.0% | |
| TTGTTTGTATAACAGACTCT+TGG | - | chr1.3:11583239-11583258 | MS.gene56038:intron | 30.0% | |
| TTTGCAAATACTAATACTCC+TGG | - | chr1.3:11583687-11583706 | MS.gene56038:intron | 30.0% | |
| ! | AAAACTAGTTTGTAAGGTGA+GGG | + | chr1.3:11582997-11583016 | None:intergenic | 30.0% |
| ! | AACTTTTCGTACAAGCAAAA+TGG | + | chr1.3:11581496-11581515 | None:intergenic | 30.0% |
| ! | AAGTACTTAAAAGCATGCAA+GGG | + | chr1.3:11583941-11583960 | None:intergenic | 30.0% |
| ! | AATCATTGCTTCAACTTTTG+AGG | - | chr1.3:11583838-11583857 | MS.gene56038:intron | 30.0% |
| ! | CTCTTTGATAATAGTACATC+AGG | + | chr1.3:11582682-11582701 | None:intergenic | 30.0% |
| ! | GAAATTTGAGTTCAATGGAT+TGG | - | chr1.3:11582713-11582732 | MS.gene56038:intron | 30.0% |
| ! | GGAGTATTAGTATTTGCAAA+TGG | + | chr1.3:11583687-11583706 | None:intergenic | 30.0% |
| ! | GTTTTCACTTTAACTGTGTA+AGG | - | chr1.3:11582092-11582111 | MS.gene56038:CDS | 30.0% |
| ! | TTCAGGAAATTTGAGTTCAA+TGG | - | chr1.3:11582708-11582727 | MS.gene56038:intron | 30.0% |
| !! | ATTGATTTTAACGCGGTTTA+TGG | - | chr1.3:11582781-11582800 | MS.gene56038:intron | 30.0% |
| !! | TAGAGTTAGCTTTAATTGCT+GGG | - | chr1.3:11580999-11581018 | MS.gene56038:intron | 30.0% |
| !!! | AGATTTTTTTGGGTGAAGTA+TGG | - | chr1.3:11581664-11581683 | MS.gene56038:CDS | 30.0% |
| !!! | GATTTTTTTGGGTGAAGTAT+GGG | - | chr1.3:11581665-11581684 | MS.gene56038:CDS | 30.0% |
| !!! | GTAATCATGCTTGCTATTTT+TGG | - | chr1.3:11581309-11581328 | MS.gene56038:intron | 30.0% |
| AAAAAACTGCATCAGTAGCA+AGG | - | chr1.3:11583909-11583928 | MS.gene56038:intron | 35.0% | |
| AAGAAGACAAGGAGAAACTT+TGG | - | chr1.3:11583365-11583384 | MS.gene56038:intron | 35.0% | |
| AAGGAGAGGTTTATTGAAGA+AGG | - | chr1.3:11581168-11581187 | MS.gene56038:CDS | 35.0% | |
| AATCAATTCCAGGGAAATCA+AGG | + | chr1.3:11582768-11582787 | None:intergenic | 35.0% | |
| AATTCCATTGAACCTTGACA+TGG | + | chr1.3:11581766-11581785 | None:intergenic | 35.0% | |
| AATTTGAAAGCTGACAGCAT+AGG | - | chr1.3:11583564-11583583 | MS.gene56038:intron | 35.0% | |
| ACATCGCATATGATTGAACA+AGG | + | chr1.3:11582339-11582358 | None:intergenic | 35.0% | |
| AGAAAGAGGTGATTCTATAG+CGG | + | chr1.3:11582590-11582609 | None:intergenic | 35.0% | |
| AGAAGACAAGGAGAAACTTT+GGG | - | chr1.3:11583366-11583385 | MS.gene56038:intron | 35.0% | |
| AGACATTAATTCAGTCCAGA+AGG | + | chr1.3:11581590-11581609 | None:intergenic | 35.0% | |
| ATACTTGCTTCTCTTACATC+AGG | + | chr1.3:11583516-11583535 | None:intergenic | 35.0% | |
| ATCAAGCAAATGCAGTTCAA+AGG | + | chr1.3:11580508-11580527 | None:intergenic | 35.0% | |
| ATGTTGATGTATCTAGACTC+GGG | - | chr1.3:11583052-11583071 | MS.gene56038:intron | 35.0% | |
| CTCTCTTTGTAAAATGGTTG+AGG | - | chr1.3:11581972-11581991 | MS.gene56038:CDS | 35.0% | |
| CTCTGCATTAAAACACAGTA+AGG | + | chr1.3:11582313-11582332 | None:intergenic | 35.0% | |
| GAGTGAAAACATAACTACTG+CGG | + | chr1.3:11581872-11581891 | None:intergenic | 35.0% | |
| GCTGTCAGCTTTCAAATTAA+TGG | + | chr1.3:11583562-11583581 | None:intergenic | 35.0% | |
| GTGTCACAGGTTATTTGAAT+TGG | + | chr1.3:11581723-11581742 | None:intergenic | 35.0% | |
| TAACTACTGCGGAAAATTCT+CGG | + | chr1.3:11581861-11581880 | None:intergenic | 35.0% | |
| TACTTGCTTCTCTTACATCA+GGG | + | chr1.3:11583515-11583534 | None:intergenic | 35.0% | |
| TCAATAAACCTCTCCTTAGT+GGG | + | chr1.3:11581165-11581184 | None:intergenic | 35.0% | |
| TCATAAGTCCAATGCTTCAA+TGG | - | chr1.3:11580367-11580386 | MS.gene56038:intron | 35.0% | |
| TGCATAATGCAGTTATTGCA+GGG | - | chr1.3:11583658-11583677 | MS.gene56038:intron | 35.0% | |
| TTCAATAAACCTCTCCTTAG+TGG | + | chr1.3:11581166-11581185 | None:intergenic | 35.0% | |
| TTTGAACTGCATTTGCTTGA+TGG | - | chr1.3:11580507-11580526 | MS.gene56038:intron | 35.0% | |
| ! | AAACTAGTTTGTAAGGTGAG+GGG | + | chr1.3:11582996-11583015 | None:intergenic | 35.0% |
| ! | AAACTTTGGGAGGAAAATCA+AGG | - | chr1.3:11583379-11583398 | MS.gene56038:intron | 35.0% |
| ! | AACAAACTCGTCCATTGATT+TGG | - | chr1.3:11583612-11583631 | MS.gene56038:intron | 35.0% |
| ! | CAAAACTAGTTTGTAAGGTG+AGG | + | chr1.3:11582998-11583017 | None:intergenic | 35.0% |
| ! | GAAGTACTTAAAAGCATGCA+AGG | + | chr1.3:11583942-11583961 | None:intergenic | 35.0% |
| ! | GAATGATACCGAGTTTTCAT+AGG | + | chr1.3:11581927-11581946 | None:intergenic | 35.0% |
| ! | TGGCCTTAACAATTACTTGA+TGG | - | chr1.3:11582046-11582065 | MS.gene56038:CDS | 35.0% |
| ! | TTAAAAGCATGCAAGGGATT+AGG | + | chr1.3:11583935-11583954 | None:intergenic | 35.0% |
| ! | TTGGATTAGATAGTCGAGAT+CGG | - | chr1.3:11583631-11583650 | MS.gene56038:intron | 35.0% |
| !! | CTAGAGTTAGCTTTAATTGC+TGG | - | chr1.3:11580998-11581017 | MS.gene56038:intron | 35.0% |
| !! | GTCTGGAAAAGTGTTACAAA+AGG | - | chr1.3:11581021-11581040 | MS.gene56038:intron | 35.0% |
| !! | TTATCAAAGAGTGTCAGTTC+AGG | - | chr1.3:11582691-11582710 | MS.gene56038:intron | 35.0% |
| !!! | TAGTTTTGTAAGAATGAGCC+AGG | - | chr1.3:11583010-11583029 | MS.gene56038:intron | 35.0% |
| AACTACTGCGGAAAATTCTC+GGG | + | chr1.3:11581860-11581879 | None:intergenic | 40.0% | |
| ACCGCGTTAAAATCAATTCC+AGG | + | chr1.3:11582778-11582797 | None:intergenic | 40.0% | |
| AGAAGCTTTGCGTAAACGAA+AGG | + | chr1.3:11581799-11581818 | None:intergenic | 40.0% | |
| AGACACTTAGCTACTCATTG+AGG | + | chr1.3:11583809-11583828 | None:intergenic | 40.0% | |
| AGTAATAGTCCAGTTCCTTC+TGG | - | chr1.3:11581572-11581591 | MS.gene56038:intron | 40.0% | |
| AGTCATACTCAAAGCACAAG+TGG | - | chr1.3:11580969-11580988 | MS.gene56038:intron | 40.0% | |
| ATCGTGTCAAAGGCTGAAAA+TGG | + | chr1.3:11584012-11584031 | None:intergenic | 40.0% | |
| ATTTGATCAAGGTCCATCTC+CGG | + | chr1.3:11582424-11582443 | None:intergenic | 40.0% | |
| CAATAAACCTCTCCTTAGTG+GGG | + | chr1.3:11581164-11581183 | None:intergenic | 40.0% | |
| CATGGTTTCAGTATGCTTGT+AGG | - | chr1.3:11584058-11584077 | MS.gene56038:CDS | 40.0% | |
| CATTGAACCTTGACATGGAA+AGG | + | chr1.3:11581761-11581780 | None:intergenic | 40.0% | |
| CCGCGTTAAAATCAATTCCA+GGG | + | chr1.3:11582777-11582796 | None:intergenic | 40.0% | |
| CGAGACGATTATTGAAGAAC+CGG | - | chr1.3:11582402-11582421 | MS.gene56038:intron | 40.0% | |
| CGGTTCTTCAATAATCGTCT+CGG | + | chr1.3:11582404-11582423 | None:intergenic | 40.0% | |
| CGTTGAGAAGAGATAAGACT+TGG | - | chr1.3:11582948-11582967 | MS.gene56038:intron | 40.0% | |
| CTGCATAATGCAGTTATTGC+AGG | - | chr1.3:11583657-11583676 | MS.gene56038:intron | 40.0% | |
| CTTTCCATGTCAAGGTTCAA+TGG | - | chr1.3:11581759-11581778 | MS.gene56038:CDS | 40.0% | |
| GAGCAGGAATCTTGATTTCA+AGG | + | chr1.3:11582618-11582637 | None:intergenic | 40.0% | |
| GATTAATCCAACGACTGATC+AGG | - | chr1.3:11581435-11581454 | MS.gene56038:intron | 40.0% | |
| GATTATTGAAGAACCGGAGA+TGG | - | chr1.3:11582408-11582427 | MS.gene56038:intron | 40.0% | |
| GGTTCTTCAATAATCGTCTC+GGG | + | chr1.3:11582403-11582422 | None:intergenic | 40.0% | |
| GTATAACAGACTCTTGGCAA+TGG | - | chr1.3:11583245-11583264 | MS.gene56038:intron | 40.0% | |
| GTCTTATCTCTTCTCAACGT+GGG | + | chr1.3:11582947-11582966 | None:intergenic | 40.0% | |
| GTTGAAGTGTGAACTCATAG+TGG | - | chr1.3:11581122-11581141 | MS.gene56038:CDS | 40.0% | |
| GTTTCAGTATGCTTGTAGGA+AGG | - | chr1.3:11584062-11584081 | MS.gene56038:CDS | 40.0% | |
| TAATTCAGTCCAGAAGGAAC+TGG | + | chr1.3:11581584-11581603 | None:intergenic | 40.0% | |
| TACAAGCAAAATGGAACCCT+AGG | + | chr1.3:11581487-11581506 | None:intergenic | 40.0% | |
| TTCGTGTTTACTGAGTAACG+CGG | + | chr1.3:11582140-11582159 | None:intergenic | 40.0% | |
| TTCTCTTACATCAGGGAATC+CGG | + | chr1.3:11583508-11583527 | None:intergenic | 40.0% | |
| ! | AGTCTTATCTCTTCTCAACG+TGG | + | chr1.3:11582948-11582967 | None:intergenic | 40.0% |
| !! | AAGCGAACAACTTTTGAGTG+AGG | - | chr1.3:11582528-11582547 | MS.gene56038:intron | 40.0% |
| !! | AGTTCAATGGATTGGATGCA+TGG | - | chr1.3:11582721-11582740 | MS.gene56038:intron | 40.0% |
| !! | ATGCGAAGAGCATTTAGTGA+AGG | - | chr1.3:11582805-11582824 | MS.gene56038:intron | 40.0% |
| !! | CCCTGGAATTGATTTTAACG+CGG | - | chr1.3:11582774-11582793 | MS.gene56038:intron | 40.0% |
| !! | TTAGCTTTAATTGCTGGGTC+TGG | - | chr1.3:11581004-11581023 | MS.gene56038:intron | 40.0% |
| AGAAGCTGCATAAGCAACCT+AGG | - | chr1.3:11581467-11581486 | MS.gene56038:intron | 45.0% | |
| AGACAAGGAGAAACTTTGGG+AGG | - | chr1.3:11583369-11583388 | MS.gene56038:intron | 45.0% | |
| AGCTCTTCCTTTCCATGTCA+AGG | - | chr1.3:11581751-11581770 | MS.gene56038:CDS | 45.0% | |
| ATCTAACTTCAAAGTGCGGC+TGG | + | chr1.3:11581378-11581397 | None:intergenic | 45.0% | |
| CATGTCAATGATGTCTGGTG+GGG | - | chr1.3:11582453-11582472 | MS.gene56038:intron | 45.0% | |
| CCATGTCAATGATGTCTGGT+GGG | - | chr1.3:11582452-11582471 | MS.gene56038:intron | 45.0% | |
| CCGTGGAAGATTTGCGAAAA+CGG | - | chr1.3:11584110-11584129 | MS.gene56038:CDS | 45.0% | |
| CGGAGGAGTTAGATATCAAG+AGG | - | chr1.3:11584130-11584149 | MS.gene56038:CDS | 45.0% | |
| GAAGCTGCATAAGCAACCTA+GGG | - | chr1.3:11581468-11581487 | MS.gene56038:intron | 45.0% | |
| GCAAATCTTCCACGGATTCT+TGG | + | chr1.3:11584105-11584124 | None:intergenic | 45.0% | |
| GGCAATGGTAACATGAGTGT+TGG | - | chr1.3:11583260-11583279 | MS.gene56038:intron | 45.0% | |
| GGTTGAGGAACAACCTCTAT+TGG | - | chr1.3:11581987-11582006 | MS.gene56038:CDS | 45.0% | |
| GTGCAGTTGCTGAGAAGAAA+AGG | + | chr1.3:11583305-11583324 | None:intergenic | 45.0% | |
| TCAGCCATCAACCAACAGTT+GGG | - | chr1.3:11581628-11581647 | MS.gene56038:CDS | 45.0% | |
| TGAGTTCGGAATCGTGTCAA+AGG | + | chr1.3:11584022-11584041 | None:intergenic | 45.0% | |
| TGGAAGATTTGCGAAAACGG+AGG | - | chr1.3:11584113-11584132 | MS.gene56038:CDS | 45.0% | |
| TGGCTGCTTGCATTTGATCA+AGG | + | chr1.3:11582435-11582454 | None:intergenic | 45.0% | |
| TTCAGCCATCAACCAACAGT+TGG | - | chr1.3:11581627-11581646 | MS.gene56038:CDS | 45.0% | |
| TTCTCGTCAATGTTCAGAGC+AGG | + | chr1.3:11582634-11582653 | None:intergenic | 45.0% | |
| ! | AAGAAAAGGCCTCTCTAGAG+TGG | + | chr1.3:11583291-11583310 | None:intergenic | 45.0% |
| ! | CCGTTTTCGCAAATCTTCCA+CGG | + | chr1.3:11584113-11584132 | None:intergenic | 45.0% |
| ! | CTTTGAAAGAGCCCAACTGT+TGG | + | chr1.3:11581642-11581661 | None:intergenic | 45.0% |
| ! | GTCGCAGGGTCTAAAATCTT+CGG | - | chr1.3:11582486-11582505 | MS.gene56038:intron | 45.0% |
| ! | TGTCTAAGACAAAGAGGCCA+TGG | - | chr1.3:11583136-11583155 | MS.gene56038:intron | 45.0% |
| ! | TGTCTTTTTCTGCCCCACTA+AGG | - | chr1.3:11581149-11581168 | MS.gene56038:CDS | 45.0% |
| !! | AGAGGGTACCATTGAAGCAT+TGG | + | chr1.3:11580378-11580397 | None:intergenic | 45.0% |
| !!! | AACATATTAAATTTTTATAT+TGG | + | chr1.3:11583037-11583056 | None:intergenic | 5.0% |
| ACTGAGTAACGCGGATGAGT+TGG | + | chr1.3:11582131-11582150 | None:intergenic | 50.0% | |
| AGGAAAGCAGGCTTCATTGC+AGG | + | chr1.3:11582748-11582767 | None:intergenic | 50.0% | |
| ATCCAACGACTGATCAGGTG+CGG | - | chr1.3:11581440-11581459 | MS.gene56038:intron | 50.0% | |
| CCAGGGAAATCAAGGAAAGC+AGG | + | chr1.3:11582760-11582779 | None:intergenic | 50.0% | |
| CCCACCAGACATCATTGACA+TGG | + | chr1.3:11582455-11582474 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGATTTCCC+TGG | - | chr1.3:11582757-11582776 | MS.gene56038:intron | 50.0% | |
| CTGAGTAACGCGGATGAGTT+GGG | + | chr1.3:11582130-11582149 | None:intergenic | 50.0% | |
| GACAGTCAACCAAGAATCCG+TGG | - | chr1.3:11584093-11584112 | MS.gene56038:CDS | 50.0% | |
| GAGCTGAGTAGTAGTGTCAC+AGG | + | chr1.3:11581736-11581755 | None:intergenic | 50.0% | |
| GCAGCCATGTCAATGATGTC+TGG | - | chr1.3:11582448-11582467 | MS.gene56038:intron | 50.0% | |
| GCCATGTCAATGATGTCTGG+TGG | - | chr1.3:11582451-11582470 | MS.gene56038:intron | 50.0% | |
| ! | AGAGCCCAACTGTTGGTTGA+TGG | + | chr1.3:11581635-11581654 | None:intergenic | 50.0% |
| ! | TTGGCCAATCCACTCTAGAG+AGG | - | chr1.3:11583279-11583298 | MS.gene56038:intron | 50.0% |
| ! | TTTTCTGCCCCACTAAGGAG+AGG | - | chr1.3:11581154-11581173 | MS.gene56038:CDS | 50.0% |
| !! | AAGGCCTCTCTAGAGTGGAT+TGG | + | chr1.3:11583286-11583305 | None:intergenic | 50.0% |
| AACCGCACCTGATCAGTCGT+TGG | + | chr1.3:11581445-11581464 | None:intergenic | 55.0% | |
| ACTTCAAAGTGCGGCTGGAG+AGG | + | chr1.3:11581373-11581392 | None:intergenic | 55.0% | |
| GTCCTCTTTAGCGCTGCACA+CGG | - | chr1.3:11583074-11583093 | MS.gene56038:intron | 55.0% | |
| TTAGCGCTGCACACGGTGAA+CGG | - | chr1.3:11583081-11583100 | MS.gene56038:intron | 55.0% | |
| ! | GCGGATGAGTTGGGCTACAT+GGG | + | chr1.3:11582121-11582140 | None:intergenic | 55.0% |
| CACCGTGTGCAGCGCTAAAG+AGG | + | chr1.3:11583079-11583098 | None:intergenic | 60.0% | |
| GGGGAAGACATGTCGTCGCA+GGG | - | chr1.3:11582472-11582491 | MS.gene56038:intron | 60.0% | |
| TGGGGAAGACATGTCGTCGC+AGG | - | chr1.3:11582471-11582490 | MS.gene56038:intron | 60.0% | |
| ! | CGCGGATGAGTTGGGCTACA+TGG | + | chr1.3:11582122-11582141 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11580284 | 11584158 | 11580284 | ID=MS.gene56038 |
| chr1.3 | mRNA | 11580284 | 11584158 | 11580284 | ID=MS.gene56038.t1;Parent=MS.gene56038 |
| chr1.3 | exon | 11584054 | 11584158 | 11584054 | ID=MS.gene56038.t1.exon1;Parent=MS.gene56038.t1 |
| chr1.3 | CDS | 11584054 | 11584158 | 11584054 | ID=cds.MS.gene56038.t1;Parent=MS.gene56038.t1 |
| chr1.3 | exon | 11581605 | 11582111 | 11581605 | ID=MS.gene56038.t1.exon2;Parent=MS.gene56038.t1 |
| chr1.3 | CDS | 11581605 | 11582111 | 11581605 | ID=cds.MS.gene56038.t1;Parent=MS.gene56038.t1 |
| chr1.3 | exon | 11581042 | 11581188 | 11581042 | ID=MS.gene56038.t1.exon3;Parent=MS.gene56038.t1 |
| chr1.3 | CDS | 11581042 | 11581188 | 11581042 | ID=cds.MS.gene56038.t1;Parent=MS.gene56038.t1 |
| chr1.3 | exon | 11580284 | 11580373 | 11580284 | ID=MS.gene56038.t1.exon4;Parent=MS.gene56038.t1 |
| chr1.3 | CDS | 11580284 | 11580373 | 11580284 | ID=cds.MS.gene56038.t1;Parent=MS.gene56038.t1 |
| Gene Sequence |
| Protein sequence |
