Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015346.t1 | XP_003611421.1 | 98 | 883 | 5 | 1 | 1 | 870 | 1 | 883 | 0.00E+00 | 1654 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015346.t1 | O04979 | 79.7 | 888 | 161 | 3 | 1 | 870 | 1 | 887 | 0.0e+00 | 1386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015346.t1 | G7JYP5 | 98.0 | 883 | 5 | 1 | 1 | 870 | 1 | 883 | 0.0e+00 | 1654.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52786 | MS.gene015346 | PPI |
| MS.gene015346 | MS.gene69343 | PPI |
| MS.gene064818 | MS.gene015346 | PPI |
| MS.gene015346 | MS.gene012897 | PPI |
| MS.gene015346 | MS.gene056009 | PPI |
| MS.gene015346 | MS.gene055539 | PPI |
| MS.gene005312 | MS.gene015346 | PPI |
| MS.gene32894 | MS.gene015346 | PPI |
| MS.gene015346 | MS.gene000515 | PPI |
| MS.gene030500 | MS.gene015346 | PPI |
| MS.gene015346 | MS.gene40791 | PPI |
| MS.gene41649 | MS.gene015346 | PPI |
| MS.gene015346 | MS.gene06260 | PPI |
| MS.gene015097 | MS.gene015346 | PPI |
| MS.gene015346 | MS.gene014362 | PPI |
| MS.gene013187 | MS.gene015346 | PPI |
| MS.gene015346 | MS.gene21022 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015346.t1 | MTR_5g013790 | 97.961 | 883 | 5 | 1 | 1 | 870 | 1 | 883 | 0.0 | 1748 |
| MS.gene015346.t1 | MTR_4g099020 | 85.135 | 888 | 114 | 3 | 1 | 870 | 1 | 888 | 0.0 | 1528 |
| MS.gene015346.t1 | MTR_4g099020 | 87.375 | 800 | 98 | 1 | 74 | 870 | 26 | 825 | 0.0 | 1425 |
| MS.gene015346.t1 | MTR_4g099020 | 87.375 | 800 | 98 | 1 | 74 | 870 | 22 | 821 | 0.0 | 1423 |
| MS.gene015346.t1 | MTR_1g084020 | 38.645 | 753 | 385 | 14 | 166 | 858 | 232 | 967 | 1.80e-154 | 478 |
| MS.gene015346.t1 | MTR_1g084030 | 43.599 | 289 | 154 | 5 | 252 | 538 | 69 | 350 | 3.77e-67 | 230 |
| MS.gene015346.t1 | MTR_1g083990 | 40.670 | 209 | 108 | 6 | 656 | 858 | 105 | 303 | 2.79e-38 | 149 |
| MS.gene015346.t1 | MTR_1522s0010 | 32.450 | 151 | 100 | 2 | 384 | 534 | 54 | 202 | 1.54e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015346.t1 | AT5G47040 | 80.877 | 889 | 150 | 4 | 1 | 870 | 1 | 888 | 0.0 | 1426 |
| MS.gene015346.t1 | AT5G26860 | 39.563 | 733 | 404 | 13 | 152 | 858 | 259 | 978 | 4.20e-158 | 488 |
| MS.gene015346.t1 | AT3G05790 | 38.219 | 730 | 401 | 12 | 166 | 858 | 211 | 927 | 5.01e-150 | 465 |
| MS.gene015346.t1 | AT3G05790 | 39.219 | 691 | 377 | 11 | 198 | 858 | 261 | 938 | 1.02e-149 | 465 |
| MS.gene015346.t1 | AT3G05780 | 40.803 | 598 | 327 | 10 | 281 | 859 | 332 | 921 | 6.31e-142 | 444 |
| MS.gene015346.t1 | AT3G05775 | 35.484 | 124 | 57 | 3 | 297 | 420 | 30 | 130 | 6.54e-16 | 75.9 |
Find 233 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTGCATCTTCCTTTCC+AGG | 0.178687 | 5.4:-7793355 | None:intergenic |
| GTTTAGCAATACTTCCTTTC+AGG | 0.199688 | 5.4:+7790344 | MS.gene015346:CDS |
| ACCATCGGTGCTAGCCAATT+TGG | 0.273405 | 5.4:+7799008 | MS.gene015346:CDS |
| AAGTCCTTTAAGTTCCTTTC+AGG | 0.285807 | 5.4:-7798973 | None:intergenic |
| CATGGAGCTTATTTCTGTTC+TGG | 0.294413 | 5.4:+7791865 | MS.gene015346:CDS |
| CCTACCTGAAAGGAACTTAA+AGG | 0.295993 | 5.4:+7798969 | MS.gene015346:CDS |
| TGGAAGGACGAAAGTTCTTT+TGG | 0.297337 | 5.4:+7792235 | MS.gene015346:CDS |
| GCATTTAATTCCAAGAGTTC+TGG | 0.305703 | 5.4:+7796126 | MS.gene015346:CDS |
| ATTGGTTGACAGGCACTTAC+AGG | 0.307853 | 5.4:+7792379 | MS.gene015346:CDS |
| GGAAGCTGGTGTTCGAAGTT+TGG | 0.311068 | 5.4:+7796720 | MS.gene015346:CDS |
| GTCCAGTTCAAGCTCTTTGC+TGG | 0.319780 | 5.4:-7794310 | None:intergenic |
| GGGACTTACTACACCACTTC+TGG | 0.321663 | 5.4:+7796828 | MS.gene015346:CDS |
| GTGACATATCAAACACATTT+AGG | 0.322166 | 5.4:+7796914 | MS.gene015346:CDS |
| ATGGAAGTCATTGAGCTTCC+TGG | 0.327888 | 5.4:+7796067 | MS.gene015346:CDS |
| ATGTTGTTCATTGGCATAAC+AGG | 0.340249 | 5.4:+7790945 | MS.gene015346:CDS |
| GGATATCTGTCGGGCTGGTC+TGG | 0.344976 | 5.4:+7797399 | MS.gene015346:CDS |
| ATCAGAAAACATGGCGGATT+CGG | 0.353303 | 5.4:+7790306 | None:intergenic |
| TCTTGGAATTAAATGCTTCA+TGG | 0.358343 | 5.4:-7796119 | None:intergenic |
| ATCTTCTATTGCTGCTGCTC+TGG | 0.359511 | 5.4:+7794589 | MS.gene015346:CDS |
| CCAGCTGAAGGCCCATCTTT+AGG | 0.362695 | 5.4:-7798035 | None:intergenic |
| AACAGAGTTTACCTCCAAAT+TGG | 0.373480 | 5.4:-7799022 | None:intergenic |
| AAGGGTGAATTACATCTTAC+TGG | 0.374677 | 5.4:+7797473 | MS.gene015346:CDS |
| GGAGGATGACCTGGCTGCCC+TGG | 0.397553 | 5.4:+7793337 | MS.gene015346:CDS |
| TTCAGAATGATGTTGTTCAT+TGG | 0.399246 | 5.4:+7790936 | MS.gene015346:CDS |
| TTCGTTGGACCTCCTGGTGT+TGG | 0.400352 | 5.4:+7794551 | MS.gene015346:CDS |
| TCAAGGAGAGGTGGAGGAAT+AGG | 0.402044 | 5.4:-7796040 | None:intergenic |
| TCCCTCTTGTGTTTAGATCC+TGG | 0.404247 | 5.4:-7791178 | None:intergenic |
| GTTTCTCTTCCATCAAACTT+TGG | 0.404295 | 5.4:-7797353 | None:intergenic |
| ACATACATTGGAAGCATGCC+AGG | 0.404875 | 5.4:+7794680 | MS.gene015346:CDS |
| AACAACATCATTCTGAACTT+TGG | 0.409435 | 5.4:-7790930 | None:intergenic |
| TAGCAGTTCACGGGCTTACC+TGG | 0.410075 | 5.4:+7794257 | MS.gene015346:CDS |
| ATGCAGCCTCCAAAGTTTGA+TGG | 0.412591 | 5.4:+7797344 | MS.gene015346:intron |
| CCATGTTGGTCCAGAACTCT+TGG | 0.417544 | 5.4:-7796136 | None:intergenic |
| AGCTTTCACTTCGAGAGTTA+AGG | 0.418238 | 5.4:+7793402 | MS.gene015346:CDS |
| GCTTTCAAAAGCAACTGAAT+TGG | 0.419154 | 5.4:+7792361 | MS.gene015346:CDS |
| CGTGACAACATTATGAAATC+CGG | 0.420626 | 5.4:-7791824 | None:intergenic |
| CGATAGCGCTGAAGTGGAAA+TGG | 0.425193 | 5.4:+7796864 | MS.gene015346:CDS |
| TTGTGCTTCGTTGGACCTCC+TGG | 0.426293 | 5.4:+7794545 | MS.gene015346:CDS |
| TGAAGAACAATTATCAATGT+TGG | 0.429291 | 5.4:+7792316 | MS.gene015346:CDS |
| GCAGATCAGCAAGAAGTTCC+AGG | 0.430208 | 5.4:-7794275 | None:intergenic |
| ATACTAGCTGCACATCGATA+TGG | 0.430794 | 5.4:+7798931 | MS.gene015346:CDS |
| ACCTCAAGCAAGGCTGAAGC+TGG | 0.431242 | 5.4:-7795460 | None:intergenic |
| TCTCTTCCATCAAACTTTGG+AGG | 0.433652 | 5.4:-7797350 | None:intergenic |
| CCCTGGGATATCTGTCGGGC+TGG | 0.434416 | 5.4:+7797394 | MS.gene015346:CDS |
| GCTTATTTCTGTTCTGGAGC+AGG | 0.435754 | 5.4:+7791871 | MS.gene015346:CDS |
| TTCCTCCACCTCTCCTTGAC+AGG | 0.440713 | 5.4:+7796044 | MS.gene015346:CDS |
| CAGGAATGCCACAAAATGTC+TGG | 0.441110 | 5.4:+7793378 | MS.gene015346:CDS |
| TCGTTGGACCTCCTGGTGTT+GGG | 0.442977 | 5.4:+7794552 | MS.gene015346:CDS |
| ATAGCTTCATCAACAACAAA+TGG | 0.448887 | 5.4:-7796946 | None:intergenic |
| GGGAAGAGATTCTTGCAGTA+TGG | 0.450131 | 5.4:-7791205 | None:intergenic |
| GGCCAGCAAAGAGCTTGAAC+TGG | 0.452589 | 5.4:+7794308 | MS.gene015346:CDS |
| AAGGATGAGGCTGATATTAG+AGG | 0.453432 | 5.4:+7794647 | MS.gene015346:CDS |
| CAGCTTCCCTGGTATATCTC+TGG | 0.456243 | 5.4:-7796705 | None:intergenic |
| CAGCTCAAATTGCACTAACA+TGG | 0.457967 | 5.4:+7797522 | MS.gene015346:CDS |
| TGACTGGAGAGATGACTTTG+AGG | 0.459709 | 5.4:+7798123 | MS.gene015346:CDS |
| ATATCAGCCAACTTGTGAAC+AGG | 0.461959 | 5.4:-7792266 | None:intergenic |
| TTCTAATCTAGAGATGGAAC+AGG | 0.462301 | 5.4:+7791790 | MS.gene015346:intron |
| TCTTTGCTGGCCTTCTGCCA+TGG | 0.466010 | 5.4:-7794297 | None:intergenic |
| AACACAGGACCTCTTGCATC+TGG | 0.473365 | 5.4:-7794524 | None:intergenic |
| AACCATAGTGATCATTGTCC+AGG | 0.474034 | 5.4:-7794353 | None:intergenic |
| CAGAGATATACCAGGGAAGC+TGG | 0.475812 | 5.4:+7796706 | MS.gene015346:CDS |
| CTATGGTTGAGAAAGTGCTT+GGG | 0.477055 | 5.4:+7796965 | MS.gene015346:CDS |
| AAGAGCAACTGATCTCAAAC+TGG | 0.477594 | 5.4:+7797944 | MS.gene015346:CDS |
| ATTTGTTGTTGATGAAGCTA+TGG | 0.479561 | 5.4:+7796948 | MS.gene015346:CDS |
| TGTGACTTTAGTCACAGCTT+TGG | 0.480340 | 5.4:+7798058 | MS.gene015346:CDS |
| CCCTCTACTCCTTTGCTAAG+TGG | 0.480905 | 5.4:-7796808 | None:intergenic |
| AGAGAAGAGAAAGGGATGAT+TGG | 0.481319 | 5.4:+7790791 | MS.gene015346:CDS |
| AAGATGCAGCCTCAGCAACC+TGG | 0.483411 | 5.4:+7794231 | MS.gene015346:CDS |
| ACATATATAGTTGTTCTTGA+AGG | 0.486468 | 5.4:+7791137 | MS.gene015346:CDS |
| ACTTCGAACACCAGCTTCCC+TGG | 0.487336 | 5.4:-7796716 | None:intergenic |
| GTAACCCCTGGGATATCTGT+CGG | 0.488188 | 5.4:+7797389 | MS.gene015346:CDS |
| TGTTGGTGGTATCAAGGATA+AGG | 0.493185 | 5.4:+7798160 | MS.gene015346:CDS |
| AGAATTTCTTCTGCGCCAGC+AGG | 0.494440 | 5.4:+7792548 | MS.gene015346:CDS |
| AACTTTGAGTGTTGTCTCCA+AGG | 0.494499 | 5.4:-7799321 | None:intergenic |
| CCTAAAGATGGGCCTTCAGC+TGG | 0.495256 | 5.4:+7798035 | MS.gene015346:CDS |
| TCTTCCTTTCCAGGGCAGCC+AGG | 0.495852 | 5.4:-7793346 | None:intergenic |
| GTTTGTGGAGGCTTCAACAA+TGG | 0.498631 | 5.4:+7797445 | MS.gene015346:CDS |
| GTGGAGGCTTCAACAATGGT+AGG | 0.500185 | 5.4:+7797449 | MS.gene015346:CDS |
| GCAGAACGTGTTGTAACCCC+TGG | 0.503121 | 5.4:+7797377 | MS.gene015346:CDS |
| TCACTGCAGCAGCACGAGCA+AGG | 0.503534 | 5.4:-7796759 | None:intergenic |
| AAGAGCTGCACAGGAACGCC+TGG | 0.505014 | 5.4:+7794335 | MS.gene015346:CDS |
| TCTTTAGGTACTGCACCTGC+AGG | 0.506064 | 5.4:-7798020 | None:intergenic |
| GCAGGTGCAGTACCTAAAGA+TGG | 0.507102 | 5.4:+7798023 | MS.gene015346:CDS |
| TAACCCCTGGGATATCTGTC+GGG | 0.507187 | 5.4:+7797390 | MS.gene015346:CDS |
| AAATTTGTGCGCATATCCCT+TGG | 0.508116 | 5.4:+7794617 | MS.gene015346:CDS |
| TCCAAATTGGCTAGCACCGA+TGG | 0.513112 | 5.4:-7799009 | None:intergenic |
| TGCTGATCTGCCATGGCAGA+AGG | 0.514222 | 5.4:+7794287 | MS.gene015346:CDS |
| ACTACCTGTTGGTGGTATCA+AGG | 0.514302 | 5.4:+7798154 | MS.gene015346:CDS |
| TGGTGGAGAAGTTCAGTTTG+TGG | 0.514334 | 5.4:+7797430 | MS.gene015346:CDS |
| TTCGTTGCACTTCACCTACC+AGG | 0.516405 | 5.4:+7790401 | MS.gene015346:CDS |
| GACTGGAGAGATGACTTTGA+GGG | 0.516889 | 5.4:+7798124 | MS.gene015346:CDS |
| ATGCCAGGGAGGCTTATAGA+TGG | 0.518627 | 5.4:+7794695 | MS.gene015346:CDS |
| TCTTTATAGAAACAAAGTAC+TGG | 0.521397 | 5.4:+7792212 | MS.gene015346:intron |
| GGCTTCAACAATGGTAGGGA+AGG | 0.522275 | 5.4:+7797454 | MS.gene015346:CDS |
| AGGAACAAAGTTCTCTTACC+TGG | 0.522993 | 5.4:+7790364 | MS.gene015346:CDS |
| AAGCAACTGAATTGGTTGAC+AGG | 0.523403 | 5.4:+7792369 | MS.gene015346:CDS |
| TCACGGTTGTTGACACCCAT+TGG | 0.523476 | 5.4:-7796895 | None:intergenic |
| TGGAAGTCATTGAGCTTCCT+GGG | 0.523618 | 5.4:+7796068 | MS.gene015346:CDS |
| GGTCCTGTGTTGTGCTTCGT+TGG | 0.524155 | 5.4:+7794536 | MS.gene015346:CDS |
| AGATCTGATACCGCTATGAC+TGG | 0.524335 | 5.4:+7798107 | MS.gene015346:CDS |
| CTGTGGCAAAGAGAAGAGAA+AGG | 0.524470 | 5.4:+7790782 | MS.gene015346:CDS |
| TATTGAATGTAGTGTGAAGT+TGG | 0.524516 | 5.4:+7790748 | MS.gene015346:intron |
| GGTGAGCATTAATCTGTTGG+AGG | 0.526627 | 5.4:+7797974 | MS.gene015346:CDS |
| AACTTCTTGCTGATCTGCCA+TGG | 0.527979 | 5.4:+7794280 | MS.gene015346:CDS |
| GACTGTTCCTGTTCACAAGT+TGG | 0.528077 | 5.4:+7792259 | MS.gene015346:CDS |
| CGCCTGGACAATGATCACTA+TGG | 0.529644 | 5.4:+7794351 | MS.gene015346:CDS |
| CCTTTAAGTTCCTTTCAGGT+AGG | 0.529882 | 5.4:-7798969 | None:intergenic |
| TGAAAGGAACTTAAAGGACT+TGG | 0.530014 | 5.4:+7798975 | MS.gene015346:CDS |
| TTATCCTTGATACCACCAAC+AGG | 0.532012 | 5.4:-7798158 | None:intergenic |
| AACCTGGGTATAGCAGTTCA+CGG | 0.533035 | 5.4:+7794247 | MS.gene015346:CDS |
| ATGACCTGGCTGCCCTGGAA+AGG | 0.534598 | 5.4:+7793342 | MS.gene015346:CDS |
| CTGGTCTGGACTTCTGTTGG+TGG | 0.535024 | 5.4:+7797413 | MS.gene015346:CDS |
| GGGCTGGTCTGGACTTCTGT+TGG | 0.535931 | 5.4:+7797410 | MS.gene015346:CDS |
| ACTTGTCGATAGCGCTGAAG+TGG | 0.536354 | 5.4:+7796858 | MS.gene015346:CDS |
| ACTTTGCATCTTCCTTTCCA+GGG | 0.537168 | 5.4:-7793354 | None:intergenic |
| AAGAGAACTTTGTTCCTGAA+AGG | 0.538793 | 5.4:-7790358 | None:intergenic |
| TTTGTGCAGATTTAATGTCC+AGG | 0.540417 | 5.4:+7791160 | MS.gene015346:CDS |
| ACTTTGAGTGTTGTCTCCAA+GGG | 0.540729 | 5.4:-7799320 | None:intergenic |
| TCCACCTCTCCTTGACAGGA+TGG | 0.542029 | 5.4:+7796048 | MS.gene015346:CDS |
| TGAATACCTAGCCGTTCGTA+AGG | 0.542078 | 5.4:+7794401 | MS.gene015346:CDS |
| TCCACTTAGCAAAGGAGTAG+AGG | 0.545494 | 5.4:+7796807 | MS.gene015346:CDS |
| CACTGCAGCAGCACGAGCAA+GGG | 0.546588 | 5.4:-7796758 | None:intergenic |
| TACCGGTCTTAGTCATCTCA+AGG | 0.548099 | 5.4:-7791226 | None:intergenic |
| TGGTGTTGGGAAAACATCAT+TGG | 0.548490 | 5.4:+7794565 | MS.gene015346:CDS |
| TCAGATGAAGGCTATAAAAG+AGG | 0.548654 | 5.4:+7793292 | MS.gene015346:intron |
| TGCGGTGAGCATTAATCTGT+TGG | 0.551507 | 5.4:+7797971 | MS.gene015346:CDS |
| TCCCTTGAGATGACTAAGAC+CGG | 0.554372 | 5.4:+7791224 | MS.gene015346:CDS |
| TCCAGCTTCAGCCTTGCTTG+AGG | 0.556384 | 5.4:+7795459 | MS.gene015346:CDS |
| CCACTTAGCAAAGGAGTAGA+GGG | 0.557449 | 5.4:+7796808 | MS.gene015346:CDS |
| CTGCTATACCCAGGTTGCTG+AGG | 0.557666 | 5.4:-7794240 | None:intergenic |
| ATACATATACATTTCCCTGC+AGG | 0.560721 | 5.4:+7798005 | MS.gene015346:CDS |
| GAAGCAGCAGTATCACGTAC+TGG | 0.563002 | 5.4:-7790821 | None:intergenic |
| ACCAGCCCGACAGATATCCC+AGG | 0.565995 | 5.4:-7797395 | None:intergenic |
| GAAAGGAAGATGCAAAGTGC+AGG | 0.568446 | 5.4:+7793359 | MS.gene015346:CDS |
| CGAATTCGAATGATAGCACC+AGG | 0.570028 | 5.4:-7790382 | None:intergenic |
| AGTCCATCTATAAGCCTCCC+TGG | 0.570350 | 5.4:-7794698 | None:intergenic |
| TGGAGGCTTCAACAATGGTA+GGG | 0.571399 | 5.4:+7797450 | MS.gene015346:CDS |
| CATATCCCTTGGTGGAGTCA+AGG | 0.571591 | 5.4:+7794628 | MS.gene015346:CDS |
| TCTGCTGAAACTAAGCAACT+TGG | 0.571818 | 5.4:+7790842 | MS.gene015346:CDS |
| TGGAGAAGTTCAGTTTGTGG+AGG | 0.572206 | 5.4:+7797433 | MS.gene015346:CDS |
| TTATAGAAACAAAGTACTGG+TGG | 0.572333 | 5.4:+7792215 | MS.gene015346:intron |
| AGGGGTCTAGTACTACCTGT+TGG | 0.573314 | 5.4:+7798143 | MS.gene015346:CDS |
| ATCCTGTCAAGGAGAGGTGG+AGG | 0.573725 | 5.4:-7796046 | None:intergenic |
| CTAGATGAAATCGACAAGAC+AGG | 0.573743 | 5.4:+7795418 | MS.gene015346:CDS |
| ATTACCTTGGATAGATCGAA+TGG | 0.574554 | 5.4:-7795989 | None:intergenic |
| ATTTCATCTAGCAACATGAC+GGG | 0.574971 | 5.4:-7795406 | None:intergenic |
| TTACATCTTACTGGACAGCT+TGG | 0.575069 | 5.4:+7797482 | MS.gene015346:CDS |
| GGTCTAGTACTACCTGTTGG+TGG | 0.575809 | 5.4:+7798146 | MS.gene015346:CDS |
| TGAGTTTCTTCAAATTCCGA+AGG | 0.577098 | 5.4:+7796168 | MS.gene015346:CDS |
| ATATATGTGACCCTCCCACT+TGG | 0.578521 | 5.4:-7791122 | None:intergenic |
| ATCGGTGCTAGCCAATTTGG+AGG | 0.578618 | 5.4:+7799011 | MS.gene015346:CDS |
| CAATGACTTCCATCCTGTCA+AGG | 0.579001 | 5.4:-7796057 | None:intergenic |
| AGATGCAGCCTCAGCAACCT+GGG | 0.579158 | 5.4:+7794232 | MS.gene015346:CDS |
| CCAAGAGTTCTGGACCAACA+TGG | 0.579915 | 5.4:+7796136 | MS.gene015346:CDS |
| AGCTCAAATTGCACTAACAT+GGG | 0.580754 | 5.4:+7797523 | MS.gene015346:CDS |
| GGAACAGGTGGAGCATGACC+CGG | 0.582137 | 5.4:+7791805 | MS.gene015346:CDS |
| TTTGTGCGCATATCCCTTGG+TGG | 0.582171 | 5.4:+7794620 | MS.gene015346:CDS |
| TCCATCCTGTCAAGGAGAGG+TGG | 0.584298 | 5.4:-7796049 | None:intergenic |
| TGATCTCAAACTGGCTGCTG+CGG | 0.587312 | 5.4:+7797953 | MS.gene015346:CDS |
| CTCATCCTTGACTCCACCAA+GGG | 0.587588 | 5.4:-7794633 | None:intergenic |
| CAAGTAGTTCCACTTAGCAA+AGG | 0.588005 | 5.4:+7796799 | MS.gene015346:CDS |
| ACCTGGGTATAGCAGTTCAC+GGG | 0.592271 | 5.4:+7794248 | MS.gene015346:CDS |
| CTCGAGCATTACACTTATCG+AGG | 0.592554 | 5.4:+7791087 | MS.gene015346:CDS |
| GTGACAACATTATGAAATCC+GGG | 0.593087 | 5.4:-7791823 | None:intergenic |
| ACTGGACTTAAGAGCTGCAC+AGG | 0.593331 | 5.4:+7794326 | MS.gene015346:CDS |
| CAGGTGCAGTACCTAAAGAT+GGG | 0.595150 | 5.4:+7798024 | MS.gene015346:CDS |
| CTTGGTTGAAGTGCCACCAT+CGG | 0.597442 | 5.4:+7798993 | MS.gene015346:CDS |
| GCTATGGTTGAGAAAGTGCT+TGG | 0.600223 | 5.4:+7796964 | MS.gene015346:CDS |
| GTGAGCATTAATCTGTTGGA+GGG | 0.600831 | 5.4:+7797975 | MS.gene015346:CDS |
| CCTTGGTGGAGTCAAGGATG+AGG | 0.605860 | 5.4:+7794634 | MS.gene015346:CDS |
| GATACTGCTTGCGAAACGAA+TGG | 0.605902 | 5.4:+7799263 | MS.gene015346:intron |
| TGTGGCAAAGAGAAGAGAAA+GGG | 0.607160 | 5.4:+7790783 | MS.gene015346:CDS |
| TCAATTTAAAGCAACTGCCA+TGG | 0.608110 | 5.4:+7791847 | MS.gene015346:CDS |
| AGAAACAAAGTACTGGTGGA+AGG | 0.610104 | 5.4:+7792219 | MS.gene015346:intron |
| CTGGTGTTCGAAGTTTGGAA+AGG | 0.610258 | 5.4:+7796725 | MS.gene015346:CDS |
| GTCCAGGATCTAAACACAAG+AGG | 0.611069 | 5.4:+7791176 | MS.gene015346:CDS |
| TAATCTAGAGATGGAACAGG+TGG | 0.612364 | 5.4:+7791793 | MS.gene015346:intron |
| CCAGCCCGACAGATATCCCA+GGG | 0.616231 | 5.4:-7797394 | None:intergenic |
| AGAGAGTCATCCTACCTGAA+AGG | 0.617338 | 5.4:+7798959 | MS.gene015346:CDS |
| TTGTTATCCAGAGATATACC+AGG | 0.619097 | 5.4:+7796698 | MS.gene015346:CDS |
| TGATGATGAGGAGGATGACC+TGG | 0.619171 | 5.4:+7793328 | MS.gene015346:CDS |
| AGTAGAGAAACCAAGTGGGA+GGG | 0.619415 | 5.4:+7791112 | MS.gene015346:CDS |
| GGACATAGGAGAACATACAT+TGG | 0.619902 | 5.4:+7794668 | MS.gene015346:CDS |
| CAGAACAGAAATAAGCTCCA+TGG | 0.620283 | 5.4:-7791864 | None:intergenic |
| GAGTAGAGAAACCAAGTGGG+AGG | 0.620927 | 5.4:+7791111 | MS.gene015346:CDS |
| ACTAAAGTCACACCAGCTGA+AGG | 0.622524 | 5.4:-7798047 | None:intergenic |
| GATTTCATCTAGCAACATGA+CGG | 0.626323 | 5.4:-7795407 | None:intergenic |
| GGAAGTATTGCTAAACGACT+CGG | 0.626468 | 5.4:-7790337 | None:intergenic |
| GAGGCTTATAGATGGACTGA+AGG | 0.629475 | 5.4:+7794703 | MS.gene015346:CDS |
| TGACAACCTTACGAACGGCT+AGG | 0.630657 | 5.4:-7794407 | None:intergenic |
| TGTTCCATTCGATCTATCCA+AGG | 0.630979 | 5.4:+7795985 | MS.gene015346:CDS |
| GCTTCAACAATGGTAGGGAA+GGG | 0.631208 | 5.4:+7797455 | MS.gene015346:CDS |
| TCCAGGATCTAAACACAAGA+GGG | 0.632631 | 5.4:+7791177 | MS.gene015346:CDS |
| CAGCTTAAGCCAGATGCAAG+AGG | 0.633930 | 5.4:+7794515 | MS.gene015346:intron |
| TGAAGAAGCATCTACCTGGT+AGG | 0.634508 | 5.4:-7790415 | None:intergenic |
| GCCCGTGAACTGCTATACCC+AGG | 0.634567 | 5.4:-7794249 | None:intergenic |
| TTCATCAACAACAAATGGAG+AGG | 0.635794 | 5.4:-7796941 | None:intergenic |
| ACTCGGTGATAATGATGATG+AGG | 0.635863 | 5.4:+7793316 | MS.gene015346:CDS |
| TCGAGCATTACACTTATCGA+GGG | 0.639262 | 5.4:+7791088 | MS.gene015346:CDS |
| TGATCACTATGGTTTAGAGA+AGG | 0.639775 | 5.4:+7794362 | MS.gene015346:CDS |
| GGTCCAACGAAGCACAACAC+AGG | 0.641264 | 5.4:-7794539 | None:intergenic |
| ACCGGTCTTAGTCATCTCAA+GGG | 0.641791 | 5.4:-7791225 | None:intergenic |
| ACTTCCATCCTGTCAAGGAG+AGG | 0.642275 | 5.4:-7796052 | None:intergenic |
| AAATTGGCTAGCACCGATGG+TGG | 0.642671 | 5.4:-7799006 | None:intergenic |
| ACTCAGAACTCAATCCATGT+TGG | 0.642681 | 5.4:-7796150 | None:intergenic |
| AGGATCAAGAACCTCAAGCA+AGG | 0.643676 | 5.4:-7795470 | None:intergenic |
| CTTTAGGTACTGCACCTGCA+GGG | 0.647269 | 5.4:-7798019 | None:intergenic |
| GGTATTGACAACCTTACGAA+CGG | 0.656181 | 5.4:-7794412 | None:intergenic |
| CCTCATCCTTGACTCCACCA+AGG | 0.656248 | 5.4:-7794634 | None:intergenic |
| GAAATGGAAGTGATACCAAT+GGG | 0.656339 | 5.4:+7796880 | MS.gene015346:CDS |
| CGGTGATAATGATGATGAGG+AGG | 0.657644 | 5.4:+7793319 | MS.gene015346:CDS |
| TATGGTTGAGAAAGTGCTTG+GGG | 0.660924 | 5.4:+7796966 | MS.gene015346:CDS |
| CAGAACGTGTTGTAACCCCT+GGG | 0.661803 | 5.4:+7797378 | MS.gene015346:CDS |
| AGGGGAGTAGAGAAACCAAG+TGG | 0.665723 | 5.4:+7791107 | MS.gene015346:CDS |
| CATACATTGGAAGCATGCCA+GGG | 0.667086 | 5.4:+7794681 | MS.gene015346:CDS |
| TAAATGTGTTTGATATGTCA+CGG | 0.669922 | 5.4:-7796912 | None:intergenic |
| AGGCTGATATTAGAGGACAT+AGG | 0.672911 | 5.4:+7794654 | MS.gene015346:CDS |
| ACTGGAGAGATGACTTTGAG+GGG | 0.676799 | 5.4:+7798125 | MS.gene015346:CDS |
| GTTTAGAGAAGGTCAAGCAG+CGG | 0.681370 | 5.4:+7794373 | MS.gene015346:CDS |
| AAGGCTATAAAAGAGGAACT+CGG | 0.682473 | 5.4:+7793299 | MS.gene015346:CDS |
| CAAACTTCCAAAGTTCATGG+TGG | 0.686043 | 5.4:+7790890 | MS.gene015346:intron |
| AAGACAGGTTCTGATGTTCG+CGG | 0.690453 | 5.4:+7795433 | MS.gene015346:CDS |
| GGAAATGGAAGTGATACCAA+TGG | 0.693833 | 5.4:+7796879 | MS.gene015346:CDS |
| ACTGCTTGCGAAACGAATGG+AGG | 0.694617 | 5.4:+7799266 | MS.gene015346:CDS |
| ATTCTGTTGATGCTAAAGTG+AGG | 0.702267 | 5.4:+7792339 | MS.gene015346:CDS |
| GGGGAGTAGAGAAACCAAGT+GGG | 0.705345 | 5.4:+7791108 | MS.gene015346:CDS |
| GCTTCCTGGGTATACACCCG+AGG | 0.706005 | 5.4:+7796081 | MS.gene015346:CDS |
| TGTTATCCAGAGATATACCA+GGG | 0.708280 | 5.4:+7796699 | MS.gene015346:CDS |
| AGTCATCTCTCCAGTCATAG+CGG | 0.711714 | 5.4:-7798117 | None:intergenic |
| CGAGCATTACACTTATCGAG+GGG | 0.714426 | 5.4:+7791089 | MS.gene015346:CDS |
| ACATTGGAAGCATGCCAGGG+AGG | 0.721249 | 5.4:+7794684 | MS.gene015346:CDS |
| AGTTGGTTGAACAAGAACTG+TGG | 0.782154 | 5.4:+7790765 | MS.gene015346:CDS |
| CAGCCCGACAGATATCCCAG+GGG | 0.819859 | 5.4:-7797393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 7790316 | 7799347 | 7790316 | ID=MS.gene015346 |
| chr5.4 | mRNA | 7790316 | 7799347 | 7790316 | ID=MS.gene015346.t1;Parent=MS.gene015346 |
| chr5.4 | exon | 7790316 | 7790422 | 7790316 | ID=MS.gene015346.t1.exon1;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7790316 | 7790422 | 7790316 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7790760 | 7790863 | 7790760 | ID=MS.gene015346.t1.exon2;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7790760 | 7790863 | 7790760 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7790903 | 7790966 | 7790903 | ID=MS.gene015346.t1.exon3;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7790903 | 7790966 | 7790903 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7791076 | 7791245 | 7791076 | ID=MS.gene015346.t1.exon4;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7791076 | 7791245 | 7791076 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7791801 | 7791892 | 7791801 | ID=MS.gene015346.t1.exon5;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7791801 | 7791892 | 7791801 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7792221 | 7792400 | 7792221 | ID=MS.gene015346.t1.exon6;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7792221 | 7792400 | 7792221 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7792486 | 7792569 | 7792486 | ID=MS.gene015346.t1.exon7;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7792486 | 7792569 | 7792486 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7793296 | 7793423 | 7793296 | ID=MS.gene015346.t1.exon8;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7793296 | 7793423 | 7793296 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7794221 | 7794422 | 7794221 | ID=MS.gene015346.t1.exon9;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7794221 | 7794422 | 7794221 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7794518 | 7794724 | 7794518 | ID=MS.gene015346.t1.exon10;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7794518 | 7794724 | 7794518 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7795388 | 7795518 | 7795388 | ID=MS.gene015346.t1.exon11;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7795388 | 7795518 | 7795388 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7795976 | 7796189 | 7795976 | ID=MS.gene015346.t1.exon12;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7795976 | 7796189 | 7795976 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7796685 | 7796987 | 7796685 | ID=MS.gene015346.t1.exon13;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7796685 | 7796987 | 7796685 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7797350 | 7797544 | 7797350 | ID=MS.gene015346.t1.exon14;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7797350 | 7797544 | 7797350 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7797936 | 7798181 | 7797936 | ID=MS.gene015346.t1.exon15;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7797936 | 7798181 | 7797936 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7798931 | 7799032 | 7798931 | ID=MS.gene015346.t1.exon16;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7798931 | 7799032 | 7798931 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| chr5.4 | exon | 7799264 | 7799347 | 7799264 | ID=MS.gene015346.t1.exon17;Parent=MS.gene015346.t1 |
| chr5.4 | CDS | 7799264 | 7799347 | 7799264 | ID=cds.MS.gene015346.t1;Parent=MS.gene015346.t1 |
| Gene Sequence |
| Protein sequence |
