AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32894


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32894.t1 MTR_3g102830 99.461 927 5 0 1 927 1 927 0.0 1867
MS.gene32894.t1 MTR_8g100040 96.224 927 34 1 1 927 1 926 0.0 1778
MS.gene32894.t1 MTR_3g498725 90.076 927 87 3 1 927 1 922 0.0 1654
MS.gene32894.t1 MTR_3g461000 51.758 825 323 9 96 912 1 758 0.0 825
MS.gene32894.t1 MTR_3g098310 46.234 863 409 13 96 912 100 953 0.0 748
MS.gene32894.t1 MTR_6g013660 43.617 940 423 18 42 903 26 936 0.0 723
MS.gene32894.t1 MTR_7g012820 44.284 901 407 15 76 903 62 940 0.0 721
MS.gene32894.t1 MTR_7g012820 44.812 877 391 14 98 903 15 869 0.0 720
MS.gene32894.t1 MTR_3g106160 44.546 871 399 11 100 903 96 949 0.0 711
MS.gene32894.t1 MTR_4g109450 41.847 877 421 13 98 907 4 858 0.0 651
MS.gene32894.t1 MTR_4g109450 42.326 834 392 13 98 864 4 815 0.0 626
MS.gene32894.t1 MTR_7g028970 41.932 880 419 16 99 910 5 860 0.0 624
MS.gene32894.t1 MTR_3g098310 45.402 696 328 10 96 746 100 788 0.0 585
MS.gene32894.t1 MTR_6g048860 91.772 158 9 1 232 389 112 265 1.57e-89 289
MS.gene32894.t1 MTR_2g099075 40.000 330 181 3 582 910 143 456 1.43e-74 253
MS.gene32894.t1 MTR_2g006950 36.294 394 220 6 508 899 11 375 5.64e-70 244
MS.gene32894.t1 MTR_2g006950 33.803 213 109 5 702 910 371 555 6.64e-27 117
MS.gene32894.t1 MTR_1g076440 83.810 105 17 0 129 233 7 111 3.91e-49 177
MS.gene32894.t1 MTR_1g076440 62.143 140 42 2 659 798 147 275 1.73e-42 157
MS.gene32894.t1 MTR_1g076440 91.892 37 1 1 891 927 276 310 9.03e-12 67.8
MS.gene32894.t1 MTR_1614s0010 37.313 201 107 4 677 875 1 184 3.41e-29 115
MS.gene32894.t1 MTR_5g098360 40.000 95 56 1 597 691 74 167 2.92e-18 83.6
MS.gene32894.t1 MTR_5g011550 28.906 128 88 2 99 223 85 212 6.77e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32894.t1 AT5G50920 86.466 931 114 7 2 927 5 928 0.0 1561
MS.gene32894.t1 AT3G48870 85.102 886 128 2 32 916 21 903 0.0 1481
MS.gene32894.t1 AT3G48870 85.102 886 128 2 32 916 52 934 0.0 1479
MS.gene32894.t1 AT3G48870 85.102 886 128 2 32 916 52 934 0.0 1479
MS.gene32894.t1 AT3G48870 85.102 886 128 2 32 916 52 934 0.0 1479
MS.gene32894.t1 AT5G51070 48.775 857 385 10 95 907 78 924 0.0 768
MS.gene32894.t1 AT5G15450 43.623 933 435 15 43 903 20 933 0.0 714
MS.gene32894.t1 AT2G25140 43.237 902 416 13 91 917 77 957 0.0 712
MS.gene32894.t1 AT1G74310 42.396 868 416 13 98 902 4 850 0.0 659
MS.gene32894.t1 AT1G74310 42.771 830 391 13 98 864 4 812 0.0 633
MS.gene32894.t1 AT4G14670 42.958 568 245 10 191 700 77 623 3.38e-140 432
MS.gene32894.t1 AT3G45450 60.548 365 97 7 96 458 1 320 9.90e-124 379
MS.gene32894.t1 AT4G30350 30.409 171 106 3 592 762 563 720 3.77e-13 74.3
MS.gene32894.t1 AT4G12060 28.652 178 117 5 49 223 50 220 5.35e-11 64.3

Find 253 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTCCCTCTATGGTTTC+AGG 0.100613 3.3:-84918447 None:intergenic
CGCACGTGTTCTTGAAAATT+TGG 0.126955 3.3:+84917894 MS.gene32894:CDS
TCTCGGTGACAGAGAGATTT+AGG 0.140708 3.3:+84921350 MS.gene32894:CDS
CTTCCACGCGAGAGTCTTTC+AGG 0.146397 3.3:-84917406 None:intergenic
GCTTGACATGAGCGAATTTA+TGG 0.159830 3.3:+84920832 MS.gene32894:CDS
CAACATGATGCTTCAAATTC+TGG 0.187197 3.3:+84921000 MS.gene32894:CDS
CGGATCTGAGCACCTGCTTT+TGG 0.194234 3.3:+84917843 MS.gene32894:CDS
AAAATAATCCTTGTCTTATT+GGG 0.195129 3.3:+84918358 MS.gene32894:CDS
ATCAAAATCCTAGGGAAAAT+TGG 0.199430 3.3:+84918272 MS.gene32894:intron
CTCTGCTAGCTTGGTCAAAT+TGG 0.202101 3.3:-84918150 None:intergenic
TTAGGTTATAACTCTGGATA+TGG 0.231513 3.3:+84918715 MS.gene32894:intron
ACCTTACACAAACGCATTAT+TGG 0.236179 3.3:+84920632 MS.gene32894:CDS
ACCAACCTGCTTTCCCTCTA+TGG 0.247395 3.3:-84918454 None:intergenic
TAGAATCATGTCTAGGGTTT+TGG 0.250519 3.3:+84916950 None:intergenic
TCAAGTCCTCTTGCTTCTTC+AGG 0.256167 3.3:-84920072 None:intergenic
GTTGGCTCTGGCACTTTAAC+TGG 0.258175 3.3:-84919428 None:intergenic
AGAGACTCGGGCAATGAATT+TGG 0.261614 3.3:-84921562 None:intergenic
AAATACTTATGCAGTGTATA+GGG 0.275098 3.3:+84919339 MS.gene32894:intron
TGCTAAGGTTCTAAAGTCTA+TGG 0.277785 3.3:+84917376 MS.gene32894:CDS
GCACGTGTTCTTGAAAATTT+GGG 0.281105 3.3:+84917895 MS.gene32894:CDS
AAGAGCTATAATGCGACTTT+TGG 0.284061 3.3:+84921426 MS.gene32894:CDS
ATTACGTCCTTTGAACTCTT+TGG 0.285314 3.3:+84917115 MS.gene32894:CDS
CACCGAGAGCTCAATCTCTT+TGG 0.293521 3.3:-84921335 None:intergenic
TAAATACTTATGCAGTGTAT+AGG 0.300680 3.3:+84919338 MS.gene32894:intron
CGCATTATAGCTCTTCTTAG+AGG 0.323792 3.3:-84921418 None:intergenic
GTGGAAGTTGAAAAGATAAT+TGG 0.327154 3.3:+84917422 MS.gene32894:CDS
TCCGCGTGCCAAGAGAGTTT+TGG 0.332554 3.3:+84917484 MS.gene32894:CDS
GTGAGGGTGCTGACAATGTT+GGG 0.335259 3.3:+84918069 MS.gene32894:CDS
TGAACGTGTTACTCAAATCT+TGG 0.342471 3.3:+84918323 MS.gene32894:CDS
AAGCTGGCAATCGGCCGGTT+AGG 0.355998 3.3:-84920719 None:intergenic
CTCTTGGCACGCGGAGTAAA+CGG 0.356129 3.3:-84917476 None:intergenic
TTTCAGGCAACTTACAAAAC+TGG 0.356617 3.3:+84921258 MS.gene32894:CDS
TTTCTAGGTCACAATTATAT+CGG 0.363485 3.3:+84917823 MS.gene32894:intron
TCAAAGAGTACAACAGTATA+GGG 0.366004 3.3:-84920947 None:intergenic
CTTAGAATGAAAATCTTGTC+TGG 0.369749 3.3:-84917153 None:intergenic
CGGAGGTGAACCAATGAGTT+TGG 0.370786 3.3:-84920870 None:intergenic
ATGCGAATGTCTGGTTTCTC+TGG 0.383078 3.3:+84917092 MS.gene32894:CDS
CTCGGTGACAGAGAGATTTA+GGG 0.386306 3.3:+84921351 MS.gene32894:CDS
GTAGTATGAGGCCAATGTTT+TGG 0.397446 3.3:-84920783 None:intergenic
CCTTGTCTTATTGGGGAACC+TGG 0.397535 3.3:+84918366 MS.gene32894:CDS
AGCTGTCATATCAATATATC+AGG 0.398244 3.3:+84919549 MS.gene32894:CDS
GATATGGGTCTACTTGTTGC+TGG 0.403560 3.3:+84918731 MS.gene32894:CDS
GGATAAAGAAATGGATCTTA+AGG 0.405165 3.3:+84920430 MS.gene32894:CDS
GCTTTCCCTCTATGGTTTCA+GGG 0.405959 3.3:-84918446 None:intergenic
TCGGCGGATAGCACGGCTAA+TGG 0.414424 3.3:-84920675 None:intergenic
GGAGGTTAGGCAGATAGTTA+AGG 0.414639 3.3:+84920098 MS.gene32894:CDS
ACCAATAATGCGTTTGTGTA+AGG 0.422221 3.3:-84920633 None:intergenic
TGGGAGGCTAACAGATAGTA+AGG 0.426292 3.3:+84921027 MS.gene32894:CDS
ATGCCAACTTTGGAGGAGTA+TGG 0.429557 3.3:+84918125 MS.gene32894:CDS
TCAACTGAGACTTTATCAAC+AGG 0.436921 3.3:-84920578 None:intergenic
ATTGGTGAAGGCACTGGTAT+TGG 0.438124 3.3:+84917353 MS.gene32894:CDS
GTTTCACTCACAGTTGGCTC+TGG 0.438691 3.3:-84919440 None:intergenic
ACATTGGCCTCATACTACTT+TGG 0.440804 3.3:+84920788 MS.gene32894:CDS
GATGAAGTGCACACTCTCAT+TGG 0.443128 3.3:+84918839 MS.gene32894:CDS
GAACGTGTTACTCAAATCTT+GGG 0.444979 3.3:+84918324 MS.gene32894:CDS
TATAGCTCTTCTTAGAGGTC+TGG 0.445858 3.3:-84921413 None:intergenic
ATCAAAGAGTACAACAGTAT+AGG 0.446881 3.3:-84920948 None:intergenic
GTTGGGGCTACTGTTGGCTC+TGG 0.447309 3.3:+84918086 MS.gene32894:CDS
CTTCGACCAGCCACTAGGCC+GGG 0.448708 3.3:-84916990 None:intergenic
ACTGCTACAATGCGAATGTC+TGG 0.449766 3.3:+84917083 MS.gene32894:CDS
TTAGGCCAGAGTTCTTGAAT+AGG 0.449813 3.3:+84921218 MS.gene32894:CDS
AGAGAGATTTAGGGAGAGAG+TGG 0.450512 3.3:+84921360 MS.gene32894:CDS
CATATTGTTGCCGCCTGGAC+TGG 0.450552 3.3:+84920551 MS.gene32894:CDS
GGGTCTTCTTCGAGAGGGTG+AGG 0.450707 3.3:+84917864 MS.gene32894:CDS
AAGATAATTGGAAGGGGTAG+TGG 0.451151 3.3:+84917434 MS.gene32894:CDS
ATCAAATCTATAGCTTTGTC+AGG 0.451675 3.3:-84919917 None:intergenic
ATGCTTCAAATTCTGGAAGA+TGG 0.451874 3.3:+84921007 MS.gene32894:CDS
TGAGTAACACGTTCAATTTG+TGG 0.454252 3.3:-84918315 None:intergenic
GTCAATTGACTGAGGCAGTT+CGG 0.454440 3.3:+84920918 MS.gene32894:CDS
GGTGAGGGTGCTGACAATGT+TGG 0.456250 3.3:+84918068 MS.gene32894:CDS
AGTTACCTCCTCTGCTAGCT+TGG 0.457680 3.3:-84918159 None:intergenic
AATAGAGCAAGGGGTGGTAG+AGG 0.458667 3.3:+84917197 MS.gene32894:CDS
AGCCATGTTTGAGCGTTTCA+CGG 0.458933 3.3:+84917238 MS.gene32894:CDS
CAAACTCATTGGTTCACCTC+CGG 0.462565 3.3:+84920871 MS.gene32894:CDS
AGCAAGGCAGAGAGTGAGGC+AGG 0.463527 3.3:+84920491 MS.gene32894:CDS
AACGTCCCCGGCCTAGTGGC+TGG 0.463587 3.3:+84916984 MS.gene32894:CDS
AGCATCATGTTGAAGACATC+AGG 0.464962 3.3:-84920989 None:intergenic
GCCAGAGTTCTTGAATAGGC+TGG 0.465682 3.3:+84921222 MS.gene32894:CDS
GAGGACTTGAAAAGGAGGTT+AGG 0.468047 3.3:+84920085 MS.gene32894:CDS
GGTCTTATTGGTGAAGGCAC+TGG 0.469001 3.3:+84917347 MS.gene32894:CDS
AGCTGGCAATCGGCCGGTTA+GGG 0.470925 3.3:-84920718 None:intergenic
AGGAGCTGAAGCAATACTTT+AGG 0.471670 3.3:+84921200 MS.gene32894:CDS
GCTCTGGCACTTTAACTGGC+TGG 0.472399 3.3:-84919424 None:intergenic
GAGAGTGAGGCAGGAGATGT+AGG 0.476103 3.3:+84920500 MS.gene32894:CDS
TGGAATCTCCTCTCCAAAGC+TGG 0.479271 3.3:-84919404 None:intergenic
AAACTCATTGGTTCACCTCC+GGG 0.479765 3.3:+84920872 MS.gene32894:CDS
TAAATATCGAGGAGAATTTG+AGG 0.479803 3.3:+84918757 MS.gene32894:CDS
ATCACCATTTGCAATCCGTT+GGG 0.479951 3.3:-84918421 None:intergenic
AACCAAAGAGATTGAGCTCT+CGG 0.480234 3.3:+84921333 MS.gene32894:CDS
ATCTGATCGCCTTCTCAAGA+TGG 0.482687 3.3:+84920604 MS.gene32894:CDS
TGTGGCTGCCTACCCACAAC+AGG 0.484594 3.3:-84918297 None:intergenic
TAATAGCAAGATGCCAACTT+TGG 0.484716 3.3:+84918115 MS.gene32894:CDS
CACACAGTCTCCAAACTCAT+TGG 0.487127 3.3:+84920860 MS.gene32894:CDS
CCTTCGACCAGCCACTAGGC+CGG 0.487507 3.3:-84916991 None:intergenic
TCAAGAGGAAGCTAGGCGGC+TGG 0.487637 3.3:+84917289 MS.gene32894:CDS
CATCACCATTTGCAATCCGT+TGG 0.487841 3.3:-84918422 None:intergenic
GACAATGTTGGGGCTACTGT+TGG 0.488557 3.3:+84918080 MS.gene32894:CDS
AGAGCTACGGGATAAAGAAA+TGG 0.489616 3.3:+84920421 MS.gene32894:CDS
CATGATTTAGGTTATAACTC+TGG 0.491292 3.3:+84918709 MS.gene32894:intron
ACTTACAAAACTGGAGGTTA+AGG 0.491625 3.3:+84921267 MS.gene32894:CDS
GAAAAGATGAAGCTGGCAAT+CGG 0.492611 3.3:-84920728 None:intergenic
CTCGCCCAACGGATTGCAAA+TGG 0.493109 3.3:+84918417 MS.gene32894:CDS
GATCTGAAGAAGCCATGATT+CGG 0.495790 3.3:+84920810 MS.gene32894:CDS
GGAAAATTGGATCCTGTTGT+GGG 0.497774 3.3:+84918285 MS.gene32894:CDS
TGAGAGTTCCAAAACTCTCT+TGG 0.497854 3.3:-84917492 None:intergenic
CACGAGCTCGGCGGATAGCA+CGG 0.498274 3.3:-84920682 None:intergenic
AGAGGGTGACTCTGTTATAG+TGG 0.499343 3.3:+84921489 MS.gene32894:CDS
GAAGGTTATAATCCTAGTTA+TGG 0.501031 3.3:+84921388 MS.gene32894:CDS
AGTTATTATGCTGGCTCAAG+AGG 0.501600 3.3:+84917274 MS.gene32894:CDS
AGAAGCAAGAGGACTTGAAA+AGG 0.502649 3.3:+84920077 MS.gene32894:CDS
GCTCATGTCAAGCCGAATCA+TGG 0.503230 3.3:-84920822 None:intergenic
ATCAACAGGGATACCAGTCC+AGG 0.503737 3.3:-84920564 None:intergenic
GCCTGGGTGCGAATATTAGT+TGG 0.503945 3.3:-84917925 None:intergenic
TCTAAGGTGCTCACTCAGAT+TGG 0.504328 3.3:+84917170 MS.gene32894:CDS
TGTATTGTTTCACTCACAGT+TGG 0.506356 3.3:-84919446 None:intergenic
CAAGAGCATCATCGGTATAA+CGG 0.506415 3.3:-84919514 None:intergenic
GGGAAAATTGGATCCTGTTG+TGG 0.507874 3.3:+84918284 MS.gene32894:intron
TCTTCGAGAGGGTGAGGGTG+TGG 0.509014 3.3:+84917870 MS.gene32894:CDS
TGAATAGGCTGGAGAGCTAC+GGG 0.510340 3.3:+84920409 MS.gene32894:intron
CCGGCCTAGTGGCTGGTCGA+AGG 0.513011 3.3:+84916991 MS.gene32894:CDS
ATAGATTTGATTGACGAAGC+TGG 0.513521 3.3:+84919929 MS.gene32894:CDS
CTGAATAGGCTGGAGAGCTA+CGG 0.514789 3.3:+84920408 MS.gene32894:intron
CTTATAATGACATCAAATGT+TGG 0.515383 3.3:+84921079 MS.gene32894:CDS
AGAGGTCTGGCACCATAACT+AGG 0.516524 3.3:-84921400 None:intergenic
CAAGAGGAAGCTAGGCGGCT+GGG 0.518796 3.3:+84917290 MS.gene32894:CDS
TTCAGATCCAAAGTAGTATG+AGG 0.520690 3.3:-84920795 None:intergenic
GTGCATGTTGAAGTCGAACT+CGG 0.521141 3.3:-84919955 None:intergenic
GTGCCATACTCCTCCAAAGT+TGG 0.521933 3.3:-84918128 None:intergenic
TGCTTCAAATTCTGGAAGAT+GGG 0.523168 3.3:+84921008 MS.gene32894:CDS
GGTCTTCTTCGAGAGGGTGA+GGG 0.523904 3.3:+84917865 MS.gene32894:CDS
CTCAGTCAATTGACCACCCT+CGG 0.523973 3.3:-84920909 None:intergenic
TAGGTTATAACTCTGGATAT+GGG 0.524032 3.3:+84918716 MS.gene32894:intron
GAAACAATACAAATATTGAA+AGG 0.525913 3.3:+84919458 MS.gene32894:CDS
TCGCAATCAAGAATTTGAAA+AGG 0.526527 3.3:+84920137 MS.gene32894:CDS
TACAACATATTGTTGCCGCC+TGG 0.526555 3.3:+84920546 MS.gene32894:CDS
CCACAACACTAGATGAATAC+AGG 0.528109 3.3:+84919363 MS.gene32894:CDS
GCTAAGGTTCTAAAGTCTAT+GGG 0.528708 3.3:+84917377 MS.gene32894:CDS
CATGCCTTCGACCAGCCACT+AGG 0.529171 3.3:-84916995 None:intergenic
AAACAATACAAATATTGAAA+GGG 0.529564 3.3:+84919459 MS.gene32894:CDS
AGTTCTCCTCTAGCAAGAGC+TGG 0.532119 3.3:-84918908 None:intergenic
GCTATCCGCCGAGCTCGTGT+TGG 0.533622 3.3:+84920686 MS.gene32894:CDS
AAATAATCCTTGTCTTATTG+GGG 0.534007 3.3:+84918359 MS.gene32894:CDS
GTGCACACTCTCATTGGAGC+AGG 0.534139 3.3:+84918845 MS.gene32894:CDS
AGCGATCAAAGTTATTATGC+TGG 0.535152 3.3:+84917265 MS.gene32894:CDS
TTGGACTTAAGAACCCTAAC+CGG 0.535590 3.3:+84920705 MS.gene32894:CDS
CTCGAAGAAGACCCAAAAGC+AGG 0.536165 3.3:-84917855 None:intergenic
AGGGAGAGAGTGGTTGACGA+AGG 0.536287 3.3:+84921370 MS.gene32894:CDS
ATAGCTGTCTTTCCGACACC+AGG 0.539131 3.3:-84918384 None:intergenic
GGTTCACCTCCGGGATATGT+TGG 0.540586 3.3:+84920881 MS.gene32894:CDS
TTGGAGGAAGCTCGCCAACT+TGG 0.541008 3.3:+84917515 MS.gene32894:CDS
TAGCAAGATGCCAACTTTGG+AGG 0.541747 3.3:+84918118 MS.gene32894:CDS
TCTTGCTAGAGGAGAACTAC+AGG 0.542715 3.3:+84918913 MS.gene32894:CDS
TTCGACCAGCCACTAGGCCG+GGG 0.543761 3.3:-84916989 None:intergenic
TTGTTGGGTCTTATTGGTGA+AGG 0.545049 3.3:+84917341 MS.gene32894:CDS
AGGCACTGGTATTGGTGCTA+AGG 0.545166 3.3:+84917361 MS.gene32894:CDS
GGAAGCAGTGTGATTGAGAA+AGG 0.546826 3.3:+84921100 MS.gene32894:CDS
GTCTGAGTTGGCCAAAACAT+TGG 0.548843 3.3:+84920772 MS.gene32894:CDS
TTAGAATGAAAATCTTGTCT+GGG 0.550033 3.3:-84917152 None:intergenic
AGGGGAACAGGTTATTCGAA+TGG 0.551374 3.3:+84918043 MS.gene32894:intron
TCCAGCCTATTCAAGAACTC+TGG 0.552565 3.3:-84921223 None:intergenic
AGATGAAGCTGGCAATCGGC+CGG 0.553474 3.3:-84920724 None:intergenic
CTCCGTGAAACGCTCAAACA+TGG 0.556050 3.3:-84917240 None:intergenic
AGCAGCTACAAGAGCATCAT+CGG 0.556339 3.3:-84919522 None:intergenic
GAACAGGTTATTCGAATGGT+TGG 0.558387 3.3:+84918047 MS.gene32894:intron
TGCATGTTGAAGTCGAACTC+GGG 0.563322 3.3:-84919954 None:intergenic
GATGAGCAAGGCAGAGAGTG+AGG 0.564477 3.3:+84920487 MS.gene32894:CDS
AATACTTATGCAGTGTATAG+GGG 0.564843 3.3:+84919340 MS.gene32894:intron
TGGAGCAGGAGCAGCTGAAG+GGG 0.565092 3.3:+84918859 MS.gene32894:CDS
GATTAACGTCCCCGGCCTAG+TGG 0.565737 3.3:+84916980 MS.gene32894:CDS
AAAGTATTGCTTCAGCTCCT+CGG 0.566849 3.3:-84921197 None:intergenic
ATTGGAGCAGGAGCAGCTGA+AGG 0.567685 3.3:+84918857 MS.gene32894:CDS
TGAAACCATAGAGGGAAAGC+AGG 0.568538 3.3:+84918449 MS.gene32894:CDS
TTATAACCGAATCAAAAGCT+TGG 0.568690 3.3:+84921171 MS.gene32894:CDS
TATGCTATCACTTACCAAGT+TGG 0.569341 3.3:-84917529 None:intergenic
TGCTGGCTCAAGAGGAAGCT+AGG 0.570017 3.3:+84917282 MS.gene32894:CDS
TGACCTTGACTATGATGAGA+AGG 0.570760 3.3:+84921141 MS.gene32894:CDS
GAGAAAGGAGGCCGTCGCAT+AGG 0.571102 3.3:+84921115 MS.gene32894:CDS
CATCGGTATAACGGAGCTTG+TGG 0.572339 3.3:-84919505 None:intergenic
AGGCATGTCAATAATAACAA+TGG 0.572370 3.3:+84917011 MS.gene32894:CDS
TTGGAGCAGGAGCAGCTGAA+GGG 0.572486 3.3:+84918858 MS.gene32894:CDS
TTGCTGAAGGTCTCGCCCAA+CGG 0.577227 3.3:+84918406 MS.gene32894:CDS
AGCTGAAGGGGCAATTGATG+CGG 0.578062 3.3:+84918871 MS.gene32894:CDS
GCTTGCTAGAGAGATTAAAG+AGG 0.579607 3.3:+84921471 MS.gene32894:CDS
TCTTAAGTCCAACACGAGCT+CGG 0.580226 3.3:-84920694 None:intergenic
TCGGTATAACCAACATATCC+CGG 0.581823 3.3:-84920890 None:intergenic
CCTGTATTCATCTAGTGTTG+TGG 0.581971 3.3:-84919363 None:intergenic
GGATATGTTGGTTATACCGA+GGG 0.583016 3.3:+84920893 MS.gene32894:CDS
TTTCTGGCCCTACTGGTGTG+GGG 0.583111 3.3:+84920747 MS.gene32894:CDS
GATAGCTGATATAATGCTGA+AGG 0.585043 3.3:+84921291 MS.gene32894:CDS
AGGGCCAGAAAAGATGAAGC+TGG 0.586569 3.3:-84920735 None:intergenic
CTTATTGGGGAACCTGGTGT+CGG 0.589543 3.3:+84918372 MS.gene32894:CDS
TGGTGTGGGGAAGTCTGAGT+TGG 0.592757 3.3:+84920760 MS.gene32894:CDS
GTTATTCGAATGGTTGGTGA+GGG 0.593949 3.3:+84918053 MS.gene32894:CDS
TCAGACTTCCCCACACCAGT+AGG 0.594609 3.3:-84920755 None:intergenic
AGCAAGAGGACTTGAAAAGG+AGG 0.596313 3.3:+84920080 MS.gene32894:CDS
GGAAATGTGATTGTGCTCAA+TGG 0.597832 3.3:+84921526 MS.gene32894:CDS
TGAGGGTGCTGACAATGTTG+GGG 0.598035 3.3:+84918070 MS.gene32894:CDS
AGTTGAAAAGATAATTGGAA+GGG 0.598116 3.3:+84917427 MS.gene32894:CDS
GATTGGTACTAATAGAGCAA+GGG 0.598171 3.3:+84917187 MS.gene32894:CDS
CAGGCAACTTACAAAACTGG+AGG 0.601353 3.3:+84921261 MS.gene32894:CDS
ATGTTACACAGGAAGAGACT+CGG 0.602576 3.3:-84921575 None:intergenic
ATAGAATCCAAAGAGTTCAA+AGG 0.604996 3.3:-84917122 None:intergenic
CAGTTACCTGAAGAAGCAAG+AGG 0.605964 3.3:+84920066 MS.gene32894:intron
GTTGAAAAGATAATTGGAAG+GGG 0.606519 3.3:+84917428 MS.gene32894:CDS
TTTGACCAAGCTAGCAGAGG+AGG 0.607369 3.3:+84918154 MS.gene32894:CDS
AGATTGGTACTAATAGAGCA+AGG 0.608222 3.3:+84917186 MS.gene32894:CDS
GCACAGTCGATTAACGTCCC+CGG 0.608320 3.3:+84916972 MS.gene32894:CDS
TGATGTCCCTGAAACCATAG+AGG 0.608411 3.3:+84918440 MS.gene32894:CDS
TTGAAACCAGCTCTTGCTAG+AGG 0.608865 3.3:+84918902 MS.gene32894:CDS
AAGTGTGTTCTTGAAGTCGA+CGG 0.610365 3.3:-84921056 None:intergenic
CATGTTGAAGACATCAGGAT+GGG 0.610516 3.3:-84920984 None:intergenic
CAGACTTCCCCACACCAGTA+GGG 0.611504 3.3:-84920754 None:intergenic
AGGTCTCTTCCATCTTGAGA+AGG 0.614391 3.3:-84920613 None:intergenic
AGTTCGACTTCAACATGCAC+AGG 0.614688 3.3:+84919958 MS.gene32894:CDS
GGAAAGACAGCTATTGCTGA+AGG 0.616017 3.3:+84918393 MS.gene32894:CDS
CTTGCTAGAGAGATTAAAGA+GGG 0.623990 3.3:+84921472 MS.gene32894:CDS
AATTGGATCCTGTTGTGGGT+AGG 0.625477 3.3:+84918289 MS.gene32894:CDS
ATTGTGCTCAATGGTAGTAG+TGG 0.625985 3.3:+84921535 MS.gene32894:CDS
TCATGTTGAAGACATCAGGA+TGG 0.628699 3.3:-84920985 None:intergenic
GGTTATTCGAATGGTTGGTG+AGG 0.630747 3.3:+84918052 MS.gene32894:intron
TGTTACACAGGAAGAGACTC+GGG 0.631623 3.3:-84921574 None:intergenic
TGTCCTTCTCATCATAGTCA+AGG 0.633612 3.3:-84921144 None:intergenic
AGACCTAGGTCTTGATCTCG+CGG 0.633922 3.3:-84917036 None:intergenic
ATTGGTACTAATAGAGCAAG+GGG 0.634310 3.3:+84917188 MS.gene32894:CDS
ACAAGTACACAATGTTACAC+AGG 0.636724 3.3:-84921586 None:intergenic
GGGATATGTTGGTTATACCG+AGG 0.637510 3.3:+84920892 MS.gene32894:CDS
TTCAAATTCTGGAAGATGGG+AGG 0.638703 3.3:+84921011 MS.gene32894:CDS
AGCTGATATAATGCTGAAGG+AGG 0.638939 3.3:+84921294 MS.gene32894:CDS
CAAGGTCAAATCCTATGCGA+CGG 0.639546 3.3:-84921126 None:intergenic
AAGTTGAAAAGATAATTGGA+AGG 0.639691 3.3:+84917426 MS.gene32894:CDS
TCCAAAACTCTCTTGGCACG+CGG 0.640826 3.3:-84917485 None:intergenic
TACATCATTCTGACAGACCT+AGG 0.643234 3.3:-84917050 None:intergenic
GATCCGCGAGATCAAGACCT+AGG 0.650976 3.3:+84917033 MS.gene32894:CDS
CCAGGTTCCCCAATAAGACA+AGG 0.651573 3.3:-84918366 None:intergenic
AATCAAAAGCTTGGTGACCG+AGG 0.652415 3.3:+84921180 MS.gene32894:CDS
CAACTGAGACTTTATCAACA+GGG 0.655191 3.3:-84920577 None:intergenic
GGGAGGCTAACAGATAGTAA+GGG 0.655267 3.3:+84921028 MS.gene32894:CDS
TAACCTGAAAGACTCTCGCG+TGG 0.657562 3.3:+84917403 MS.gene32894:CDS
ACATGAGCGAATTTATGGAA+CGG 0.659884 3.3:+84920837 MS.gene32894:CDS
AGAGTACAACAGTATAGGGA+CGG 0.660046 3.3:-84920943 None:intergenic
ATAGTGGATGCTGATTCTGA+TGG 0.662089 3.3:+84921505 MS.gene32894:CDS
TATGTTGGTTATACCGAGGG+TGG 0.666290 3.3:+84920896 MS.gene32894:CDS
CAATTTGACCAAGCTAGCAG+AGG 0.667069 3.3:+84918151 MS.gene32894:CDS
TAAGTCCAACACGAGCTCGG+CGG 0.668859 3.3:-84920691 None:intergenic
TCCAACTAATATTCGCACCC+AGG 0.669218 3.3:+84917924 MS.gene32894:CDS
AGCAGTGTGATTGAGAAAGG+AGG 0.675394 3.3:+84921103 MS.gene32894:CDS
GATGTCCCTGAAACCATAGA+GGG 0.678856 3.3:+84918441 MS.gene32894:CDS
GGTACTAATAGAGCAAGGGG+TGG 0.680045 3.3:+84917191 MS.gene32894:CDS
GTTGCTGGAACTAAATATCG+AGG 0.680415 3.3:+84918746 MS.gene32894:CDS
AACAGGGATACCAGTCCAGG+CGG 0.697211 3.3:-84920561 None:intergenic
CGAGGGTGGTCAATTGACTG+AGG 0.703199 3.3:+84920910 MS.gene32894:CDS
GTATAACCAACATATCCCGG+AGG 0.777636 3.3:-84920887 None:intergenic
TGGCTCAAGAGGAAGCTAGG+CGG 0.788911 3.3:+84917285 MS.gene32894:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAAAAATTCTGAA+TGG + chr3.3:84919217-84919236 MS.gene32894:intron 10.0%
!! ATATAATAAATATACGTAAA+CGG - chr3.3:84917973-84917992 None:intergenic 10.0%
!!! ATTGTTTACAAAATTTATTT+TGG + chr3.3:84919781-84919800 MS.gene32894:intron 10.0%
!!! TTTTTTTTTTTTAATAGTTC+TGG + chr3.3:84919637-84919656 MS.gene32894:intron 10.0%
!! AAAAAATGAAATGTTGAAAA+TGG - chr3.3:84919181-84919200 None:intergenic 15.0%
!! AAAAATGAAATGTTGAAAAT+GGG - chr3.3:84919180-84919199 None:intergenic 15.0%
!! AAACAATACAAATATTGAAA+GGG + chr3.3:84919459-84919478 MS.gene32894:CDS 15.0%
!! ACATAATATTAAGCTAATTA+AGG + chr3.3:84920241-84920260 MS.gene32894:intron 15.0%
!!! AAATTTTGTAAACAATTCAA+AGG - chr3.3:84919777-84919796 None:intergenic 15.0%
!! AAAAATAATCCTTGTCTTAT+TGG + chr3.3:84918357-84918376 MS.gene32894:CDS 20.0%
!! ATATGAAAAACGACATATAA+AGG - chr3.3:84917555-84917574 None:intergenic 20.0%
!! GAAACAATACAAATATTGAA+AGG + chr3.3:84919458-84919477 MS.gene32894:CDS 20.0%
!! TCAAGCTAAATCTTAAATTA+TGG - chr3.3:84920168-84920187 None:intergenic 20.0%
!! TTATTATTAAGATAAACAGC+AGG - chr3.3:84919869-84919888 None:intergenic 20.0%
!!! AAAATAATCCTTGTCTTATT+GGG + chr3.3:84918358-84918377 MS.gene32894:CDS 20.0%
!!! AAATTACAAAAGATTGACTT+TGG - chr3.3:84919745-84919764 None:intergenic 20.0%
!!! AATAAGACAAGGATTATTTT+TGG - chr3.3:84918358-84918377 None:intergenic 20.0%
!!! TAACATTAACCAACATTTTT+AGG + chr3.3:84920188-84920207 MS.gene32894:intron 20.0%
!!! TGGAATTTTAGCATATTTTA+TGG + chr3.3:84918656-84918675 MS.gene32894:intron 20.0%
!!! TTTGTTTACGTTTGAAATTT+TGG + chr3.3:84917786-84917805 MS.gene32894:intron 20.0%
! AAACACAACATTACAACAAA+GGG + chr3.3:84918612-84918631 MS.gene32894:intron 25.0%
! AAATACTTATGCAGTGTATA+GGG + chr3.3:84919339-84919358 MS.gene32894:intron 25.0%
! AAGTTGAAAAGATAATTGGA+AGG + chr3.3:84917426-84917445 MS.gene32894:CDS 25.0%
! ACATAAATTAAGATGAAAGC+AGG - chr3.3:84918001-84918020 None:intergenic 25.0%
! AGCCAAAAAGTAAAAGAATT+TGG - chr3.3:84920357-84920376 None:intergenic 25.0%
! AGCTCTTATACAAAAAAACA+AGG + chr3.3:84920463-84920482 MS.gene32894:CDS 25.0%
! AGTTGAAAAGATAATTGGAA+GGG + chr3.3:84917427-84917446 MS.gene32894:CDS 25.0%
! ATCAAGAATTTGAAAAGGTA+AGG + chr3.3:84920142-84920161 MS.gene32894:intron 25.0%
! ATGTAATCTCGTATGAAAAA+AGG - chr3.3:84920225-84920244 None:intergenic 25.0%
! CTGGTATTGTATGTTTAAAT+GGG + chr3.3:84919709-84919728 MS.gene32894:intron 25.0%
! CTTATAATGACATCAAATGT+TGG + chr3.3:84921079-84921098 MS.gene32894:CDS 25.0%
! GTTAAGTATCCTAAAAATGT+TGG - chr3.3:84920200-84920219 None:intergenic 25.0%
! TAAACACAACATTACAACAA+AGG + chr3.3:84918611-84918630 MS.gene32894:intron 25.0%
! TAAATACTTATGCAGTGTAT+AGG + chr3.3:84919338-84919357 MS.gene32894:intron 25.0%
! TCTGGTATTGTATGTTTAAA+TGG + chr3.3:84919708-84919727 MS.gene32894:intron 25.0%
! TTAGAATGAAAATCTTGTCT+GGG - chr3.3:84917155-84917174 None:intergenic 25.0%
! TTGAAACTTCAGCAAATATA+TGG - chr3.3:84919071-84919090 None:intergenic 25.0%
! TTTCTAGGTCACAATTATAT+CGG + chr3.3:84917823-84917842 MS.gene32894:intron 25.0%
!! AAATAATCCTTGTCTTATTG+GGG + chr3.3:84918359-84918378 MS.gene32894:CDS 25.0%
!! GAAGTTTCAATAATTAGCTT+TGG + chr3.3:84919081-84919100 MS.gene32894:intron 25.0%
!! TCTAGTTTACAAATTGTTGT+TGG + chr3.3:84918494-84918513 MS.gene32894:intron 25.0%
!! TCTTTCTTTTATTAGGAATG+TGG + chr3.3:84917750-84917769 MS.gene32894:intron 25.0%
!! TTTACAAATTGTTGTTGGTT+TGG + chr3.3:84918499-84918518 MS.gene32894:intron 25.0%
!! TTTCTGCTCTTTCTTTTATT+AGG + chr3.3:84917743-84917762 MS.gene32894:intron 25.0%
!!! ACTTTTTGGCTAATAATTAG+CGG + chr3.3:84920366-84920385 MS.gene32894:intron 25.0%
!!! CTCCAAATTCTTTTACTTTT+TGG + chr3.3:84920352-84920371 MS.gene32894:intron 25.0%
!!! CTGTTTTAAGTTCTTAGATA+TGG + chr3.3:84918636-84918655 MS.gene32894:intron 25.0%
!!! TGAAATTTTGGCTTACATTT+TGG + chr3.3:84917798-84917817 MS.gene32894:intron 25.0%
AAAATTCTGAATGGTCACTT+TGG + chr3.3:84919226-84919245 MS.gene32894:intron 30.0%
AATACTTATGCAGTGTATAG+GGG + chr3.3:84919340-84919359 MS.gene32894:intron 30.0%
AATCTGTCACTAAGAAAACT+AGG - chr3.3:84918191-84918210 None:intergenic 30.0%
AGCTGTCATATCAATATATC+AGG + chr3.3:84919549-84919568 MS.gene32894:CDS 30.0%
AGGCATGTCAATAATAACAA+TGG + chr3.3:84917011-84917030 MS.gene32894:CDS 30.0%
ATAGAATCCAAAGAGTTCAA+AGG - chr3.3:84917125-84917144 None:intergenic 30.0%
ATCAAAATCCTAGGGAAAAT+TGG + chr3.3:84918272-84918291 MS.gene32894:intron 30.0%
ATCAATCAAAGCAACAATCA+AGG - chr3.3:84917649-84917668 None:intergenic 30.0%
CTTAGAATGAAAATCTTGTC+TGG - chr3.3:84917156-84917175 None:intergenic 30.0%
GAAGGTTATAATCCTAGTTA+TGG + chr3.3:84921388-84921407 MS.gene32894:CDS 30.0%
GAGATTGAAAAAACTAATGG+AGG + chr3.3:84918781-84918800 MS.gene32894:CDS 30.0%
GCACAGCTATATATATTCTT+CGG - chr3.3:84919273-84919292 None:intergenic 30.0%
GGAGAGATTGAAAAAACTAA+TGG + chr3.3:84918778-84918797 MS.gene32894:CDS 30.0%
GGATAAAGAAATGGATCTTA+AGG + chr3.3:84920430-84920449 MS.gene32894:CDS 30.0%
GTGGAAGTTGAAAAGATAAT+TGG + chr3.3:84917422-84917441 MS.gene32894:CDS 30.0%
GTTGAAAAGATAATTGGAAG+GGG + chr3.3:84917428-84917447 MS.gene32894:CDS 30.0%
TAAATATCGAGGAGAATTTG+AGG + chr3.3:84918757-84918776 MS.gene32894:CDS 30.0%
TAATCTCGTATGAAAAAAGG+TGG - chr3.3:84920222-84920241 None:intergenic 30.0%
TAATGTTGTGTTTAGTTGTG+TGG - chr3.3:84918605-84918624 None:intergenic 30.0%
TACTTAAGAGATAGAAGTTG+TGG - chr3.3:84919310-84919329 None:intergenic 30.0%
TAGGTTATAACTCTGGATAT+GGG + chr3.3:84918716-84918735 MS.gene32894:intron 30.0%
TCGCAATCAAGAATTTGAAA+AGG + chr3.3:84920137-84920156 MS.gene32894:CDS 30.0%
TGGTACCTTAATTTCTGAAT+AGG + chr3.3:84920394-84920413 MS.gene32894:intron 30.0%
TTAGGTTATAACTCTGGATA+TGG + chr3.3:84918715-84918734 MS.gene32894:intron 30.0%
TTATAACCGAATCAAAAGCT+TGG + chr3.3:84921171-84921190 MS.gene32894:CDS 30.0%
TTATTAAGATAAACAGCAGG+TGG - chr3.3:84919866-84919885 None:intergenic 30.0%
TTTGTTTGAAGACATTGTAG+TGG + chr3.3:84920308-84920327 MS.gene32894:intron 30.0%
! CAGACAAGATTTTCATTCTA+AGG + chr3.3:84917154-84917173 MS.gene32894:CDS 30.0%
! CATGATTTAGGTTATAACTC+TGG + chr3.3:84918709-84918728 MS.gene32894:intron 30.0%
! GTTGAAAATGGGTTTAACTT+CGG - chr3.3:84919169-84919188 None:intergenic 30.0%
! TGGATGAAATGATTGTTTTC+AGG + chr3.3:84921242-84921261 MS.gene32894:CDS 30.0%
!! ATCAAATCTATAGCTTTGTC+AGG - chr3.3:84919920-84919939 None:intergenic 30.0%
!! CAAATTTTGTTGGGTCTTAT+TGG + chr3.3:84917335-84917354 MS.gene32894:CDS 30.0%
!! CCTCTAAAATCAAAATCCTA+GGG + chr3.3:84918264-84918283 MS.gene32894:intron 30.0%
!! TCCTCTAAAATCAAAATCCT+AGG + chr3.3:84918263-84918282 MS.gene32894:intron 30.0%
!!! AGTATTTCACTTTTGACTTG+CGG + chr3.3:84919037-84919056 MS.gene32894:intron 30.0%
!!! CTTTTTGGCTAATAATTAGC+GGG + chr3.3:84920367-84920386 MS.gene32894:intron 30.0%
!!! GCTTACATTTTGGAATTTCT+AGG + chr3.3:84917808-84917827 MS.gene32894:intron 30.0%
AAAAAACAAGGAGATGAGCA+AGG + chr3.3:84920475-84920494 MS.gene32894:CDS 35.0%
AACCTAAATCATGCAGAATG+AGG - chr3.3:84918702-84918721 None:intergenic 35.0%
ACATGAGCGAATTTATGGAA+CGG + chr3.3:84920837-84920856 MS.gene32894:CDS 35.0%
ACCAATAATGCGTTTGTGTA+AGG - chr3.3:84920636-84920655 None:intergenic 35.0%
ACCTTAATTTCTGAATAGGC+TGG + chr3.3:84920398-84920417 MS.gene32894:intron 35.0%
ACCTTACACAAACGCATTAT+TGG + chr3.3:84920632-84920651 MS.gene32894:CDS 35.0%
ACTTACAAAACTGGAGGTTA+AGG + chr3.3:84921267-84921286 MS.gene32894:CDS 35.0%
AGATTGGTACTAATAGAGCA+AGG + chr3.3:84917186-84917205 MS.gene32894:CDS 35.0%
AGCGATCAAAGTTATTATGC+TGG + chr3.3:84917265-84917284 MS.gene32894:CDS 35.0%
ATAGATTTGATTGACGAAGC+TGG + chr3.3:84919929-84919948 MS.gene32894:CDS 35.0%
ATGAGAACATAATACTAGCC+TGG - chr3.3:84917945-84917964 None:intergenic 35.0%
ATTACGTCCTTTGAACTCTT+TGG + chr3.3:84917115-84917134 MS.gene32894:CDS 35.0%
ATTGGTACTAATAGAGCAAG+GGG + chr3.3:84917188-84917207 MS.gene32894:CDS 35.0%
CAACATGATGCTTCAAATTC+TGG + chr3.3:84921000-84921019 MS.gene32894:CDS 35.0%
CAACTGAGACTTTATCAACA+GGG - chr3.3:84920580-84920599 None:intergenic 35.0%
CATTGAAAAAGATCCAGCTT+TGG + chr3.3:84919391-84919410 MS.gene32894:CDS 35.0%
CGTCTATTGTTGAGCTAATT+GGG + chr3.3:84920026-84920045 MS.gene32894:intron 35.0%
CTTGCTAGAGAGATTAAAGA+GGG + chr3.3:84921472-84921491 MS.gene32894:CDS 35.0%
GATAGCTGATATAATGCTGA+AGG + chr3.3:84921291-84921310 MS.gene32894:CDS 35.0%
GATTGGTACTAATAGAGCAA+GGG + chr3.3:84917187-84917206 MS.gene32894:CDS 35.0%
GCACGTGTTCTTGAAAATTT+GGG + chr3.3:84917895-84917914 MS.gene32894:CDS 35.0%
GTGGAAAACAACAAGATACA+GGG - chr3.3:84919847-84919866 None:intergenic 35.0%
TAATAGCAAGATGCCAACTT+TGG + chr3.3:84918115-84918134 MS.gene32894:CDS 35.0%
TATGCTATCACTTACCAAGT+TGG - chr3.3:84917532-84917551 None:intergenic 35.0%
TCAACTGAGACTTTATCAAC+AGG - chr3.3:84920581-84920600 None:intergenic 35.0%
TCCAGCCTATTCAGAAATTA+AGG - chr3.3:84920402-84920421 None:intergenic 35.0%
TCGTCTATTGTTGAGCTAAT+TGG + chr3.3:84920025-84920044 MS.gene32894:intron 35.0%
TGAAGTCGCTATAGAACTTT+AGG - chr3.3:84920280-84920299 None:intergenic 35.0%
TGAGTAACACGTTCAATTTG+TGG - chr3.3:84918318-84918337 None:intergenic 35.0%
TGTATTGTTTCACTCACAGT+TGG - chr3.3:84919449-84919468 None:intergenic 35.0%
TTCAGATCCAAAGTAGTATG+AGG - chr3.3:84920798-84920817 None:intergenic 35.0%
TTTCAGGCAACTTACAAAAC+TGG + chr3.3:84921258-84921277 MS.gene32894:CDS 35.0%
! AAGAGCTATAATGCGACTTT+TGG + chr3.3:84921426-84921445 MS.gene32894:CDS 35.0%
! AATCTTCTAGAAAGAGTCGA+CGG + chr3.3:84918546-84918565 MS.gene32894:intron 35.0%
! ACGCGACATTTTACATAGTA+CGG + chr3.3:84918964-84918983 MS.gene32894:intron 35.0%
! ATGCTTCAAATTCTGGAAGA+TGG + chr3.3:84921007-84921026 MS.gene32894:CDS 35.0%
! GAACGTGTTACTCAAATCTT+GGG + chr3.3:84918324-84918343 MS.gene32894:CDS 35.0%
! GGAACAGAGCAAATTTTGTT+GGG + chr3.3:84917326-84917345 MS.gene32894:CDS 35.0%
! TGAACGTGTTACTCAAATCT+TGG + chr3.3:84918323-84918342 MS.gene32894:CDS 35.0%
! TGAGAACATAATACTAGCCT+GGG - chr3.3:84917944-84917963 None:intergenic 35.0%
! TGCTTCAAATTCTGGAAGAT+GGG + chr3.3:84921008-84921027 MS.gene32894:CDS 35.0%
!! AATTGTTGTTGGTTTGGTTC+AGG + chr3.3:84918505-84918524 MS.gene32894:intron 35.0%
!! AGAACTGTTGGTTCAGAAAA+TGG - chr3.3:84920001-84920020 None:intergenic 35.0%
!! ATTGTTGTTGGTTTGGTTCA+GGG + chr3.3:84918506-84918525 MS.gene32894:intron 35.0%
!! CAAATTTTCAAGAACACGTG+CGG - chr3.3:84917896-84917915 None:intergenic 35.0%
!! GCTAAGGTTCTAAAGTCTAT+GGG + chr3.3:84917377-84917396 MS.gene32894:CDS 35.0%
!! TGCTAAGGTTCTAAAGTCTA+TGG + chr3.3:84917376-84917395 MS.gene32894:CDS 35.0%
!! TGTTGCTTTGATTGATCTGA+TGG + chr3.3:84917653-84917672 MS.gene32894:intron 35.0%
!!! CCCTAGGATTTTGATTTTAG+AGG - chr3.3:84918267-84918286 None:intergenic 35.0%
AACCAAAGAGATTGAGCTCT+CGG + chr3.3:84921333-84921352 MS.gene32894:CDS 40.0%
AAGATAATTGGAAGGGGTAG+TGG + chr3.3:84917434-84917453 MS.gene32894:CDS 40.0%
AAGTGTGTTCTTGAAGTCGA+CGG - chr3.3:84921059-84921078 None:intergenic 40.0%
AGAAGCAAGAGGACTTGAAA+AGG + chr3.3:84920077-84920096 MS.gene32894:CDS 40.0%
AGAGCTACGGGATAAAGAAA+TGG + chr3.3:84920421-84920440 MS.gene32894:CDS 40.0%
AGCAACAATCAAGGCATGTT+TGG - chr3.3:84917640-84917659 None:intergenic 40.0%
AGCATCATGTTGAAGACATC+AGG - chr3.3:84920992-84921011 None:intergenic 40.0%
AGCCTCATTCTGCATGATTT+AGG + chr3.3:84918697-84918716 MS.gene32894:intron 40.0%
AGCTGATATAATGCTGAAGG+AGG + chr3.3:84921294-84921313 MS.gene32894:CDS 40.0%
AGGAGCTGAAGCAATACTTT+AGG + chr3.3:84921200-84921219 MS.gene32894:CDS 40.0%
ATAGACGAGACAAGAACTGT+TGG - chr3.3:84920013-84920032 None:intergenic 40.0%
ATCACCATTTGCAATCCGTT+GGG - chr3.3:84918424-84918443 None:intergenic 40.0%
ATTGTGCTCAATGGTAGTAG+TGG + chr3.3:84921535-84921554 MS.gene32894:CDS 40.0%
CATGTTGAAGACATCAGGAT+GGG - chr3.3:84920987-84921006 None:intergenic 40.0%
CCACAACACTAGATGAATAC+AGG + chr3.3:84919363-84919382 MS.gene32894:CDS 40.0%
CCTGTATTCATCTAGTGTTG+TGG - chr3.3:84919366-84919385 None:intergenic 40.0%
CGCACGTGTTCTTGAAAATT+TGG + chr3.3:84917894-84917913 MS.gene32894:CDS 40.0%
CGCATTATAGCTCTTCTTAG+AGG - chr3.3:84921421-84921440 None:intergenic 40.0%
GAAAAGATGAAGCTGGCAAT+CGG - chr3.3:84920731-84920750 None:intergenic 40.0%
GAACAGGTTATTCGAATGGT+TGG + chr3.3:84918047-84918066 MS.gene32894:intron 40.0%
GATCTGAAGAAGCCATGATT+CGG + chr3.3:84920810-84920829 MS.gene32894:CDS 40.0%
GCTTGACATGAGCGAATTTA+TGG + chr3.3:84920832-84920851 MS.gene32894:CDS 40.0%
GGAAAATTGGATCCTGTTGT+GGG + chr3.3:84918285-84918304 MS.gene32894:CDS 40.0%
GGAAATGTGATTGTGCTCAA+TGG + chr3.3:84921526-84921545 MS.gene32894:CDS 40.0%
GGTGGAAAACAACAAGATAC+AGG - chr3.3:84919848-84919867 None:intergenic 40.0%
GTGTGCGTAAGCTTCATAAA+GGG - chr3.3:84918573-84918592 None:intergenic 40.0%
GTTGCTGGAACTAAATATCG+AGG + chr3.3:84918746-84918765 MS.gene32894:CDS 40.0%
TACATCATTCTGACAGACCT+AGG - chr3.3:84917053-84917072 None:intergenic 40.0%
TATAGCTCTTCTTAGAGGTC+TGG - chr3.3:84921416-84921435 None:intergenic 40.0%
TATTGTTGAGCTAATTGGGC+TGG + chr3.3:84920030-84920049 MS.gene32894:intron 40.0%
TCATGTTGAAGACATCAGGA+TGG - chr3.3:84920988-84921007 None:intergenic 40.0%
TCGGTATAACCAACATATCC+CGG - chr3.3:84920893-84920912 None:intergenic 40.0%
TGACCTTGACTATGATGAGA+AGG + chr3.3:84921141-84921160 MS.gene32894:CDS 40.0%
TGAGAGTTCCAAAACTCTCT+TGG - chr3.3:84917495-84917514 None:intergenic 40.0%
TGTCCTTCTCATCATAGTCA+AGG - chr3.3:84921147-84921166 None:intergenic 40.0%
TGTGTGCGTAAGCTTCATAA+AGG - chr3.3:84918574-84918593 None:intergenic 40.0%
TTAGGCCAGAGTTCTTGAAT+AGG + chr3.3:84921218-84921237 MS.gene32894:CDS 40.0%
TTGGACTTAAGAACCCTAAC+CGG + chr3.3:84920705-84920724 MS.gene32894:CDS 40.0%
! AACAGGATCCAATTTTCCCT+AGG - chr3.3:84918283-84918302 None:intergenic 40.0%
! AAGGCTTGGTTATTGTTGTC+TGG + chr3.3:84919690-84919709 MS.gene32894:intron 40.0%
! ACATTGGCCTCATACTACTT+TGG + chr3.3:84920788-84920807 MS.gene32894:CDS 40.0%
! ATTGCCAGCTTCATCTTTTC+TGG + chr3.3:84920731-84920750 MS.gene32894:CDS 40.0%
! CGGAACAGAGCAAATTTTGT+TGG + chr3.3:84917325-84917344 MS.gene32894:CDS 40.0%
! GCTTGCTAGAGAGATTAAAG+AGG + chr3.3:84921471-84921490 MS.gene32894:CDS 40.0%
! GGATATGTTGGTTATACCGA+GGG + chr3.3:84920893-84920912 MS.gene32894:CDS 40.0%
! GTAGTATGAGGCCAATGTTT+TGG - chr3.3:84920786-84920805 None:intergenic 40.0%
! TTCAAATTCTGGAAGATGGG+AGG + chr3.3:84921011-84921030 MS.gene32894:CDS 40.0%
!! AAAAAGATCCAGCTTTGGAG+AGG + chr3.3:84919396-84919415 MS.gene32894:CDS 40.0%
!! AAAGTATTGCTTCAGCTCCT+CGG - chr3.3:84921200-84921219 None:intergenic 40.0%
!! ACTTCGGTGACTTTGAGTTT+TGG - chr3.3:84919153-84919172 None:intergenic 40.0%
!! AGTTATTATGCTGGCTCAAG+AGG + chr3.3:84917274-84917293 MS.gene32894:CDS 40.0%
!! ATAGTGGATGCTGATTCTGA+TGG + chr3.3:84921505-84921524 MS.gene32894:CDS 40.0%
!! CAAGAGCATCATCGGTATAA+CGG - chr3.3:84919517-84919536 None:intergenic 40.0%
!! GTTATTCGAATGGTTGGTGA+GGG + chr3.3:84918053-84918072 MS.gene32894:CDS 40.0%
!! TTGTTGGGTCTTATTGGTGA+AGG + chr3.3:84917341-84917360 MS.gene32894:CDS 40.0%
!!! AGTTTTGGAACTCTCATTGG+AGG + chr3.3:84917499-84917518 MS.gene32894:CDS 40.0%
!!! GAGAGTTTTGGAACTCTCAT+TGG + chr3.3:84917496-84917515 MS.gene32894:CDS 40.0%
AATAACCTGTTCCCCTCAAG+TGG - chr3.3:84918039-84918058 None:intergenic 45.0%
AATTGGATCCTGTTGTGGGT+AGG + chr3.3:84918289-84918308 MS.gene32894:CDS 45.0%
ACTGCTACAATGCGAATGTC+TGG + chr3.3:84917083-84917102 MS.gene32894:CDS 45.0%
AGAGACTCGGGCAATGAATT+TGG - chr3.3:84921565-84921584 None:intergenic 45.0%
AGAGAGATTTAGGGAGAGAG+TGG + chr3.3:84921360-84921379 MS.gene32894:CDS 45.0%
AGAGGGTGACTCTGTTATAG+TGG + chr3.3:84921489-84921508 MS.gene32894:CDS 45.0%
AGCAAGAGGACTTGAAAAGG+AGG + chr3.3:84920080-84920099 MS.gene32894:CDS 45.0%
AGCAGTGTGATTGAGAAAGG+AGG + chr3.3:84921103-84921122 MS.gene32894:CDS 45.0%
AGCCATGTTTGAGCGTTTCA+CGG + chr3.3:84917238-84917257 MS.gene32894:CDS 45.0%
AGGGGAACAGGTTATTCGAA+TGG + chr3.3:84918043-84918062 MS.gene32894:intron 45.0%
AGGTCTCTTCCATCTTGAGA+AGG - chr3.3:84920616-84920635 None:intergenic 45.0%
AGTTCGACTTCAACATGCAC+AGG + chr3.3:84919958-84919977 MS.gene32894:CDS 45.0%
ATCTGATCGCCTTCTCAAGA+TGG + chr3.3:84920604-84920623 MS.gene32894:CDS 45.0%
CAAGGTCAAATCCTATGCGA+CGG - chr3.3:84921129-84921148 None:intergenic 45.0%
CAATTTGACCAAGCTAGCAG+AGG + chr3.3:84918151-84918170 MS.gene32894:CDS 45.0%
CACACAGTCTCCAAACTCAT+TGG + chr3.3:84920860-84920879 MS.gene32894:CDS 45.0%
CAGGCAACTTACAAAACTGG+AGG + chr3.3:84921261-84921280 MS.gene32894:CDS 45.0%
CAGTTACCTGAAGAAGCAAG+AGG + chr3.3:84920066-84920085 MS.gene32894:intron 45.0%
CATCACCATTTGCAATCCGT+TGG - chr3.3:84918425-84918444 None:intergenic 45.0%
CTCGGTGACAGAGAGATTTA+GGG + chr3.3:84921351-84921370 MS.gene32894:CDS 45.0%
GAGGACTTGAAAAGGAGGTT+AGG + chr3.3:84920085-84920104 MS.gene32894:CDS 45.0%
GATGAAGTGCACACTCTCAT+TGG + chr3.3:84918839-84918858 MS.gene32894:CDS 45.0%
GATGTCCCTGAAACCATAGA+GGG + chr3.3:84918441-84918460 MS.gene32894:CDS 45.0%
GCTTTCCCTCTATGGTTTCA+GGG - chr3.3:84918449-84918468 None:intergenic 45.0%
GGAAAGACAGCTATTGCTGA+AGG + chr3.3:84918393-84918412 MS.gene32894:CDS 45.0%
GGAAGCAGTGTGATTGAGAA+AGG + chr3.3:84921100-84921119 MS.gene32894:CDS 45.0%
GGAGGTTAGGCAGATAGTTA+AGG + chr3.3:84920098-84920117 MS.gene32894:CDS 45.0%
GGGAAAATTGGATCCTGTTG+TGG + chr3.3:84918284-84918303 MS.gene32894:intron 45.0%
GGGAGGCTAACAGATAGTAA+GGG + chr3.3:84921028-84921047 MS.gene32894:CDS 45.0%
GTATAACCAACATATCCCGG+AGG - chr3.3:84920890-84920909 None:intergenic 45.0%
GTCAATTGACTGAGGCAGTT+CGG + chr3.3:84920918-84920937 MS.gene32894:CDS 45.0%
GTGCATGTTGAAGTCGAACT+CGG - chr3.3:84919958-84919977 None:intergenic 45.0%
GTTGTGTTTAGTTGTGTGGC+TGG - chr3.3:84918601-84918620 None:intergenic 45.0%
TACAACATATTGTTGCCGCC+TGG + chr3.3:84920546-84920565 MS.gene32894:CDS 45.0%
TAGCAAGATGCCAACTTTGG+AGG + chr3.3:84918118-84918137 MS.gene32894:CDS 45.0%
TCAAGTCCTCTTGCTTCTTC+AGG - chr3.3:84920075-84920094 None:intergenic 45.0%
TCCAACTAATATTCGCACCC+AGG + chr3.3:84917924-84917943 MS.gene32894:CDS 45.0%
TCCAGCCTATTCAAGAACTC+TGG - chr3.3:84921226-84921245 None:intergenic 45.0%
TCTCGGTGACAGAGAGATTT+AGG + chr3.3:84921350-84921369 MS.gene32894:CDS 45.0%
TCTTAAGTCCAACACGAGCT+CGG - chr3.3:84920697-84920716 None:intergenic 45.0%
TCTTGCTAGAGGAGAACTAC+AGG + chr3.3:84918913-84918932 MS.gene32894:CDS 45.0%
TGAAACCATAGAGGGAAAGC+AGG + chr3.3:84918449-84918468 MS.gene32894:CDS 45.0%
TGATGTCCCTGAAACCATAG+AGG + chr3.3:84918440-84918459 MS.gene32894:CDS 45.0%
TGCATGTTGAAGTCGAACTC+GGG - chr3.3:84919957-84919976 None:intergenic 45.0%
TGCTTTCCCTCTATGGTTTC+AGG - chr3.3:84918450-84918469 None:intergenic 45.0%
TGGGAGGCTAACAGATAGTA+AGG + chr3.3:84921027-84921046 MS.gene32894:CDS 45.0%
TTGAAACCAGCTCTTGCTAG+AGG + chr3.3:84918902-84918921 MS.gene32894:CDS 45.0%
! AAAGAGCAGAAAGCGCAGAA+AGG - chr3.3:84917735-84917754 None:intergenic 45.0%
! AATCAAAAGCTTGGTGACCG+AGG + chr3.3:84921180-84921199 MS.gene32894:CDS 45.0%
! ATGCCAACTTTGGAGGAGTA+TGG + chr3.3:84918125-84918144 MS.gene32894:CDS 45.0%
! ATGCGAATGTCTGGTTTCTC+TGG + chr3.3:84917092-84917111 MS.gene32894:CDS 45.0%
! CTCTGCTAGCTTGGTCAAAT+TGG - chr3.3:84918153-84918172 None:intergenic 45.0%
! GATATGGGTCTACTTGTTGC+TGG + chr3.3:84918731-84918750 MS.gene32894:CDS 45.0%
! GGGATATGTTGGTTATACCG+AGG + chr3.3:84920892-84920911 MS.gene32894:CDS 45.0%
! GGTTATTCGAATGGTTGGTG+AGG + chr3.3:84918052-84918071 MS.gene32894:intron 45.0%
! GTCTGAGTTGGCCAAAACAT+TGG + chr3.3:84920772-84920791 MS.gene32894:CDS 45.0%
! TATGTTGGTTATACCGAGGG+TGG + chr3.3:84920896-84920915 MS.gene32894:CDS 45.0%
! TCTAAGGTGCTCACTCAGAT+TGG + chr3.3:84917170-84917189 MS.gene32894:CDS 45.0%
! TCTGAATGGTCACTTTGGAC+TGG + chr3.3:84919231-84919250 MS.gene32894:intron 45.0%
!! AAACTCATTGGTTCACCTCC+GGG + chr3.3:84920872-84920891 MS.gene32894:CDS 45.0%
!! AGCAGCTACAAGAGCATCAT+CGG - chr3.3:84919525-84919544 None:intergenic 45.0%
!! ATTGGTGAAGGCACTGGTAT+TGG + chr3.3:84917353-84917372 MS.gene32894:CDS 45.0%
!! CAAACTCATTGGTTCACCTC+CGG + chr3.3:84920871-84920890 MS.gene32894:CDS 45.0%
!! CGGTCACCAAGCTTTTGATT+CGG - chr3.3:84921180-84921199 None:intergenic 45.0%
!! CTTTTGGGTCTTCTTCGAGA+GGG + chr3.3:84917859-84917878 MS.gene32894:CDS 45.0%
!! GCTAATAATTAGCGGGCTGA+TGG + chr3.3:84920374-84920393 MS.gene32894:intron 45.0%
!! TTCATCTTTTCTGGCCCTAC+TGG + chr3.3:84920740-84920759 MS.gene32894:CDS 45.0%
AATAGAGCAAGGGGTGGTAG+AGG + chr3.3:84917197-84917216 MS.gene32894:CDS 50.0%
ACCAACCTGCTTTCCCTCTA+TGG - chr3.3:84918457-84918476 None:intergenic 50.0%
ACCATAGAGGGAAAGCAGGT+TGG + chr3.3:84918453-84918472 MS.gene32894:intron 50.0%
AGACCTAGGTCTTGATCTCG+CGG - chr3.3:84917039-84917058 None:intergenic 50.0%
AGAGGTCTGGCACCATAACT+AGG - chr3.3:84921403-84921422 None:intergenic 50.0%
AGCTGAAGGGGCAATTGATG+CGG + chr3.3:84918871-84918890 MS.gene32894:CDS 50.0%
AGGGCCAGAAAAGATGAAGC+TGG - chr3.3:84920738-84920757 None:intergenic 50.0%
AGTTACCTCCTCTGCTAGCT+TGG - chr3.3:84918162-84918181 None:intergenic 50.0%
AGTTCTCCTCTAGCAAGAGC+TGG - chr3.3:84918911-84918930 None:intergenic 50.0%
ATAGCTGTCTTTCCGACACC+AGG - chr3.3:84918387-84918406 None:intergenic 50.0%
ATCAACAGGGATACCAGTCC+AGG - chr3.3:84920567-84920586 None:intergenic 50.0%
CACCGAGAGCTCAATCTCTT+TGG - chr3.3:84921338-84921357 None:intergenic 50.0%
CATGTTTAACCCCGCGTAGT+GGG + chr3.3:84919665-84919684 MS.gene32894:intron 50.0%
CCAGGTTCCCCAATAAGACA+AGG - chr3.3:84918369-84918388 None:intergenic 50.0%
CGGAGGTGAACCAATGAGTT+TGG - chr3.3:84920873-84920892 None:intergenic 50.0%
CTCAGTCAATTGACCACCCT+CGG - chr3.3:84920912-84920931 None:intergenic 50.0%
CTCCGTGAAACGCTCAAACA+TGG - chr3.3:84917243-84917262 None:intergenic 50.0%
CTCGAAGAAGACCCAAAAGC+AGG - chr3.3:84917858-84917877 None:intergenic 50.0%
CTGAATAGGCTGGAGAGCTA+CGG + chr3.3:84920408-84920427 MS.gene32894:intron 50.0%
CTTATTGGGGAACCTGGTGT+CGG + chr3.3:84918372-84918391 MS.gene32894:CDS 50.0%
GACAATGTTGGGGCTACTGT+TGG + chr3.3:84918080-84918099 MS.gene32894:CDS 50.0%
GCCAGAGTTCTTGAATAGGC+TGG + chr3.3:84921222-84921241 MS.gene32894:CDS 50.0%
GCCTGGGTGCGAATATTAGT+TGG - chr3.3:84917928-84917947 None:intergenic 50.0%
GCTCATGTCAAGCCGAATCA+TGG - chr3.3:84920825-84920844 None:intergenic 50.0%
GGTACTAATAGAGCAAGGGG+TGG + chr3.3:84917191-84917210 MS.gene32894:CDS 50.0%
GTGCCATACTCCTCCAAAGT+TGG - chr3.3:84918131-84918150 None:intergenic 50.0%
TAACCTGAAAGACTCTCGCG+TGG + chr3.3:84917403-84917422 MS.gene32894:CDS 50.0%
TCCAAAACTCTCTTGGCACG+CGG - chr3.3:84917488-84917507 None:intergenic 50.0%
TGAATAGGCTGGAGAGCTAC+GGG + chr3.3:84920409-84920428 MS.gene32894:intron 50.0%
TGGAATCTCCTCTCCAAAGC+TGG - chr3.3:84919407-84919426 None:intergenic 50.0%
TGTGTTTGCGCTCCACTTGA+GGG + chr3.3:84918024-84918043 MS.gene32894:intron 50.0%
TTTGACCAAGCTAGCAGAGG+AGG + chr3.3:84918154-84918173 MS.gene32894:CDS 50.0%
! CATCGGTATAACGGAGCTTG+TGG - chr3.3:84919508-84919527 None:intergenic 50.0%
! CCTTGTCTTATTGGGGAACC+TGG + chr3.3:84918366-84918385 MS.gene32894:CDS 50.0%
! CGGCTGGGTCACAATTTTGT+CGG + chr3.3:84917305-84917324 MS.gene32894:CDS 50.0%
! GTTTCACTCACAGTTGGCTC+TGG - chr3.3:84919443-84919462 None:intergenic 50.0%
!! AGGCACTGGTATTGGTGCTA+AGG + chr3.3:84917361-84917380 MS.gene32894:CDS 50.0%
!! GCGACTTTTGGAAGACAGCA+TGG + chr3.3:84921438-84921457 MS.gene32894:CDS 50.0%
!! GCTTTTGGGTCTTCTTCGAG+AGG + chr3.3:84917858-84917877 MS.gene32894:CDS 50.0%
!! GGATCTGAGCACCTGCTTTT+GGG + chr3.3:84917844-84917863 MS.gene32894:CDS 50.0%
!! GGTCTTATTGGTGAAGGCAC+TGG + chr3.3:84917347-84917366 MS.gene32894:CDS 50.0%
!! GTGAGGGTGCTGACAATGTT+GGG + chr3.3:84918069-84918088 MS.gene32894:CDS 50.0%
!! GTTGGCTCTGGCACTTTAAC+TGG - chr3.3:84919431-84919450 None:intergenic 50.0%
!! TGAGGGTGCTGACAATGTTG+GGG + chr3.3:84918070-84918089 MS.gene32894:CDS 50.0%
!! TTTTCTGGCCCTACTGGTGT+GGG + chr3.3:84920746-84920765 MS.gene32894:CDS 50.0%
AACAGGGATACCAGTCCAGG+CGG - chr3.3:84920564-84920583 None:intergenic 55.0%
AGATGAAGCTGGCAATCGGC+CGG - chr3.3:84920727-84920746 None:intergenic 55.0%
AGGGAGAGAGTGGTTGACGA+AGG + chr3.3:84921370-84921389 MS.gene32894:CDS 55.0%
ATTGGAGCAGGAGCAGCTGA+AGG + chr3.3:84918857-84918876 MS.gene32894:CDS 55.0%
CAGACTTCCCCACACCAGTA+GGG - chr3.3:84920757-84920776 None:intergenic 55.0%
CATATTGTTGCCGCCTGGAC+TGG + chr3.3:84920551-84920570 MS.gene32894:CDS 55.0%
CGAGGGTGGTCAATTGACTG+AGG + chr3.3:84920910-84920929 MS.gene32894:CDS 55.0%
CTCTTGGCACGCGGAGTAAA+CGG - chr3.3:84917479-84917498 None:intergenic 55.0%
CTTCCACGCGAGAGTCTTTC+AGG - chr3.3:84917409-84917428 None:intergenic 55.0%
GAGAGTGAGGCAGGAGATGT+AGG + chr3.3:84920500-84920519 MS.gene32894:CDS 55.0%
GATCCGCGAGATCAAGACCT+AGG + chr3.3:84917033-84917052 MS.gene32894:CDS 55.0%
GATGAGCAAGGCAGAGAGTG+AGG + chr3.3:84920487-84920506 MS.gene32894:CDS 55.0%
GCACAGTCGATTAACGTCCC+CGG + chr3.3:84916972-84916991 MS.gene32894:CDS 55.0%
GCATGTTTAACCCCGCGTAG+TGG + chr3.3:84919664-84919683 MS.gene32894:intron 55.0%
GCTCTGGCACTTTAACTGGC+TGG - chr3.3:84919427-84919446 None:intergenic 55.0%
GGTCTTCTTCGAGAGGGTGA+GGG + chr3.3:84917865-84917884 MS.gene32894:CDS 55.0%
GGTTCACCTCCGGGATATGT+TGG + chr3.3:84920881-84920900 MS.gene32894:CDS 55.0%
GTGCACACTCTCATTGGAGC+AGG + chr3.3:84918845-84918864 MS.gene32894:CDS 55.0%
GTGTGTTTGCGCTCCACTTG+AGG + chr3.3:84918023-84918042 MS.gene32894:intron 55.0%
GTGTTTGCGCTCCACTTGAG+GGG + chr3.3:84918025-84918044 MS.gene32894:intron 55.0%
TAAGTCCAACACGAGCTCGG+CGG - chr3.3:84920694-84920713 None:intergenic 55.0%
TCAGACTTCCCCACACCAGT+AGG - chr3.3:84920758-84920777 None:intergenic 55.0%
TGGCTCAAGAGGAAGCTAGG+CGG + chr3.3:84917285-84917304 MS.gene32894:CDS 55.0%
TGGTGTGGGGAAGTCTGAGT+TGG + chr3.3:84920760-84920779 MS.gene32894:CDS 55.0%
TTGCTGAAGGTCTCGCCCAA+CGG + chr3.3:84918406-84918425 MS.gene32894:CDS 55.0%
TTGGAGCAGGAGCAGCTGAA+GGG + chr3.3:84918858-84918877 MS.gene32894:CDS 55.0%
TTGGAGGAAGCTCGCCAACT+TGG + chr3.3:84917515-84917534 MS.gene32894:CDS 55.0%
! AAGCCTTTTCCCACTACGCG+GGG - chr3.3:84919677-84919696 None:intergenic 55.0%
! AGCAGAAAGCGCAGAAAGGC+GGG - chr3.3:84917731-84917750 None:intergenic 55.0%
! CAAGCCTTTTCCCACTACGC+GGG - chr3.3:84919678-84919697 None:intergenic 55.0%
! CCAAGCCTTTTCCCACTACG+CGG - chr3.3:84919679-84919698 None:intergenic 55.0%
! CGGATCTGAGCACCTGCTTT+TGG + chr3.3:84917843-84917862 MS.gene32894:CDS 55.0%
! GAGCAGAAAGCGCAGAAAGG+CGG - chr3.3:84917732-84917751 None:intergenic 55.0%
! TAACCCCGCGTAGTGGGAAA+AGG + chr3.3:84919671-84919690 MS.gene32894:intron 55.0%
! TCCGCGTGCCAAGAGAGTTT+TGG + chr3.3:84917484-84917503 MS.gene32894:CDS 55.0%
! TTTCTGGCCCTACTGGTGTG+GGG + chr3.3:84920747-84920766 MS.gene32894:CDS 55.0%
!! CTCGCCCAACGGATTGCAAA+TGG + chr3.3:84918417-84918436 MS.gene32894:CDS 55.0%
!! CTTTTCTGGCCCTACTGGTG+TGG + chr3.3:84920745-84920764 MS.gene32894:CDS 55.0%
!! GGTGAGGGTGCTGACAATGT+TGG + chr3.3:84918068-84918087 MS.gene32894:CDS 55.0%
!! TGCTGGCTCAAGAGGAAGCT+AGG + chr3.3:84917282-84917301 MS.gene32894:CDS 55.0%
AAGCTGGCAATCGGCCGGTT+AGG - chr3.3:84920722-84920741 None:intergenic 60.0%
AGCAAGGCAGAGAGTGAGGC+AGG + chr3.3:84920491-84920510 MS.gene32894:CDS 60.0%
AGCTGGCAATCGGCCGGTTA+GGG - chr3.3:84920721-84920740 None:intergenic 60.0%
CAAGAGGAAGCTAGGCGGCT+GGG + chr3.3:84917290-84917309 MS.gene32894:CDS 60.0%
CATGCCTTCGACCAGCCACT+AGG - chr3.3:84916998-84917017 None:intergenic 60.0%
GAGAAAGGAGGCCGTCGCAT+AGG + chr3.3:84921115-84921134 MS.gene32894:CDS 60.0%
GATTAACGTCCCCGGCCTAG+TGG + chr3.3:84916980-84916999 MS.gene32894:CDS 60.0%
GGGTCTTCTTCGAGAGGGTG+AGG + chr3.3:84917864-84917883 MS.gene32894:CDS 60.0%
TCAAGAGGAAGCTAGGCGGC+TGG + chr3.3:84917289-84917308 MS.gene32894:CDS 60.0%
TCGGCGGATAGCACGGCTAA+TGG - chr3.3:84920678-84920697 None:intergenic 60.0%
TCTTCGAGAGGGTGAGGGTG+TGG + chr3.3:84917870-84917889 MS.gene32894:CDS 60.0%
TGGAGCAGGAGCAGCTGAAG+GGG + chr3.3:84918859-84918878 MS.gene32894:CDS 60.0%
TGTGGCTGCCTACCCACAAC+AGG - chr3.3:84918300-84918319 None:intergenic 60.0%
! CCGCGTAGTGGGAAAAGGCT+TGG + chr3.3:84919676-84919695 MS.gene32894:intron 60.0%
!! GTTGGGGCTACTGTTGGCTC+TGG + chr3.3:84918086-84918105 MS.gene32894:CDS 60.0%
CACGAGCTCGGCGGATAGCA+CGG - chr3.3:84920685-84920704 None:intergenic 65.0%
CCTTCGACCAGCCACTAGGC+CGG - chr3.3:84916994-84917013 None:intergenic 65.0%
CTTCGACCAGCCACTAGGCC+GGG - chr3.3:84916993-84917012 None:intergenic 65.0%
GCGCTCCACTTGAGGGGAAC+AGG + chr3.3:84918031-84918050 MS.gene32894:intron 65.0%
GCTATCCGCCGAGCTCGTGT+TGG + chr3.3:84920686-84920705 MS.gene32894:CDS 65.0%
TTCGACCAGCCACTAGGCCG+GGG - chr3.3:84916992-84917011 None:intergenic 65.0%
AACGTCCCCGGCCTAGTGGC+TGG + chr3.3:84916984-84917003 MS.gene32894:CDS 70.0%
! CCGGCCTAGTGGCTGGTCGA+AGG + chr3.3:84916991-84917010 MS.gene32894:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 84916957 84921594 84916957 ID=MS.gene32894
chr3.3 mRNA 84916957 84921594 84916957 ID=MS.gene32894.t1;Parent=MS.gene32894
chr3.3 exon 84916957 84917536 84916957 ID=MS.gene32894.t1.exon1;Parent=MS.gene32894.t1
chr3.3 CDS 84916957 84917536 84916957 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
chr3.3 exon 84917830 84917945 84917830 ID=MS.gene32894.t1.exon2;Parent=MS.gene32894.t1
chr3.3 CDS 84917830 84917945 84917830 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
chr3.3 exon 84918053 84918175 84918053 ID=MS.gene32894.t1.exon3;Parent=MS.gene32894.t1
chr3.3 CDS 84918053 84918175 84918053 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
chr3.3 exon 84918285 84918470 84918285 ID=MS.gene32894.t1.exon4;Parent=MS.gene32894.t1
chr3.3 CDS 84918285 84918470 84918285 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
chr3.3 exon 84918719 84918934 84918719 ID=MS.gene32894.t1.exon5;Parent=MS.gene32894.t1
chr3.3 CDS 84918719 84918934 84918719 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
chr3.3 exon 84919353 84919570 84919353 ID=MS.gene32894.t1.exon6;Parent=MS.gene32894.t1
chr3.3 CDS 84919353 84919570 84919353 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
chr3.3 exon 84919904 84919979 84919904 ID=MS.gene32894.t1.exon7;Parent=MS.gene32894.t1
chr3.3 CDS 84919904 84919979 84919904 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
chr3.3 exon 84920069 84920158 84920069 ID=MS.gene32894.t1.exon8;Parent=MS.gene32894.t1
chr3.3 CDS 84920069 84920158 84920069 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
chr3.3 exon 84920416 84921594 84920416 ID=MS.gene32894.t1.exon9;Parent=MS.gene32894.t1
chr3.3 CDS 84920416 84921594 84920416 ID=cds.MS.gene32894.t1;Parent=MS.gene32894.t1
Gene Sequence

>MS.gene32894

ATGTCTAGGGTTTTGGCACAGTCGATTAACGTCCCCGGCCTAGTGGCTGGTCGAAGGCATGTCAATAATAACAATGGATCCGCGAGATCAAGACCTAGGTCTGTCAGAATGATGTATGCTACACAAACTGCTACAATGCGAATGTCTGGTTTCTCTGGATTACGTCCTTTGAACTCTTTGGATTCTATGTTTAGACCCAGACAAGATTTTCATTCTAAGGTGCTCACTCAGATTGGTACTAATAGAGCAAGGGGTGGTAGAGGTAGCAGATGTGTAACTAGAGCCATGTTTGAGCGTTTCACGGAGAAAGCGATCAAAGTTATTATGCTGGCTCAAGAGGAAGCTAGGCGGCTGGGTCACAATTTTGTCGGAACAGAGCAAATTTTGTTGGGTCTTATTGGTGAAGGCACTGGTATTGGTGCTAAGGTTCTAAAGTCTATGGGAATTAACCTGAAAGACTCTCGCGTGGAAGTTGAAAAGATAATTGGAAGGGGTAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACTCCGCGTGCCAAGAGAGTTTTGGAACTCTCATTGGAGGAAGCTCGCCAACTTGGTAAGTGATAGCATACCTTTATATGTCGTTTTTCATATCAAATCAATTATACTTTGTTTACGAAAATTGTGTTCATGACTTGTTATTTATATGATTTATTCCAAACATGCCTTGATTGTTGCTTTGATTGATCTGATGGTTTCAAAGCGAGTTTAAAATTATCTATGAGTTGTTGTTAGTTTATTTTTTGACCCGCCTTTCTGCGCTTTCTGCTCTTTCTTTTATTAGGAATGTGGTTAAAAATTTGTATTTGTTTACGTTTGAAATTTTGGCTTACATTTTGGAATTTCTAGGTCACAATTATATCGGATCTGAGCACCTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTGGCCGCACGTGTTCTTGAAAATTTGGGTGCTGATCCAACTAATATTCGCACCCAGGCTAGTATTATGTTCTCATTTATTCCGTTTACGTATATTTATTATATAAGAACCTGCTTTCATCTTAATTTATGTTTGTGTGTTTGCGCTCCACTTGAGGGGAACAGGTTATTCGAATGGTTGGTGAGGGTGCTGACAATGTTGGGGCTACTGTTGGCTCTGGAAGTAGTAATAGCAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGTAACTTACAATCCTAGTTTTCTTAGTGACAGATTGTTGATGACGTCTCATTATGTGTTCAAGCATGCTTATTTTCTCTCGTCTTTGTCCTCTAAAATCAAAATCCTAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTTACTCAAATCTTGGGTCGTCGCACCAAAAATAATCCTTGTCTTATTGGGGAACCTGGTGTCGGAAAGACAGCTATTGCTGAAGGTCTCGCCCAACGGATTGCAAATGGTGATGTCCCTGAAACCATAGAGGGAAAGCAGGTTGGTGTTTCTTTTTTTCTATTTCTAGTTTACAAATTGTTGTTGGTTTGGTTCAGGGTATTTGCTCTTTCTTTAAATCTTCTAGAAAGAGTCGACGGACCCTTTATGAAGCTTACGCACACATAGACCAGCCACACAACTAAACACAACATTACAACAAAGGGTCTGTTTTAAGTTCTTAGATATGGAATTTTAGCATATTTTATGGTGTCTTGAGTGACATGAAAGCCTCATTCTGCATGATTTAGGTTATAACTCTGGATATGGGTCTACTTGTTGCTGGAACTAAATATCGAGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAAATCAAGCAAAGTGATGAAATAATACTTTTCATAGATGAAGTGCACACTCTCATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCGGCAAACATATTGAAACCAGCTCTTGCTAGAGGAGAACTACAGGTAATGTTTTCTTGATATAAAAAATAGATACGCGACATTTTACATAGTACGGTAATAATTCAGCAATACAATGATTTCAAACTGTATAGCGAATCACAATGCAGTATTTCACTTTTGACTTGCGGATCAATGACCATATATTTGCTGAAGTTTCAATAATTAGCTTTGGAATAATTTTATCTGAAAAAAAAGTGTACACATTTTCAACAAAGTCACCAAAACTCAAAGTCACCGAAGTTAAACCCATTTTCAACATTTCATTTTTTTTTTATCAATAGTATAAAAAAATTAAAAATTCTGAATGGTCACTTTGGACTGGCTATGAAACGTGAAGACCGAAGAATATATATAGCTGTGCATATGCTGAATTTGCCACAACTTCTATCTCTTAAGTAAATAAATTTAAATACTTATGCAGTGTATAGGGGCCACAACACTAGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGAGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGAGTGAAACAATACAAATATTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACCGATGATGCTCTTGTAGCTGCTGCAGAGCTGTCATATCAATATATCAGGTTTGACATAATTTATATTATGCACATTCTCTCATCATTTCAATTTTGATTTATGCTGTGTAAATTTTTTTTTTTTTTAATAGTTCTGGTATTGCATGTTTAACCCCGCGTAGTGGGAAAAGGCTTGGTTATTGTTGTCTGGTATTGTATGTTTAAATGGGAATTTTTTGACCAAAGTCAATCTTTTGTAATTTATTATTATGCCTTTGAATTGTTTACAAAATTTATTTTGGAACTCTCATATAGTTGTGAATATGAATGAATCAAACTGTACCCTGTATCTTGTTGTTTTCCACCTGCTGTTTATCTTAATAATAATTATGTCTTCTGCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGTTCCCGAGTTCGACTTCAACATGCACAGGTATTGTTTGTTCTTCTACCATTTTCTGAACCAACAGTTCTTGTCTCGTCTATTGTTGAGCTAATTGGGCTGGATTTATATTCTTGCAGTTACCTGAAGAAGCAAGAGGACTTGAAAAGGAGGTTAGGCAGATAGTTAAGGAGAAAGATGAAGCTGTTCGCAATCAAGAATTTGAAAAGGTAAGGCCATAATTTAAGATTTAGCTTGATAACATTAACCAACATTTTTAGGATACTTAACCACCTTTTTTCATACGAGATTACATAATATTAAGCTAATTAAGGCTATGTTATCTTTCCTAAAGTTCTATAGCGACTTCAGTCTAGTTTTTGTTTGAAGACATTGTAGTGGTTTGTTCTTTCGATTATATATCTCCAAATTCTTTTACTTTTTGGCTAATAATTAGCGGGCTGATGGTACCTTAATTTCTGAATAGGCTGGAGAGCTACGGGATAAAGAAATGGATCTTAAGGCTCAGATATCAGCTCTTATACAAAAAAACAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGTAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTTGCCGCCTGGACTGGTATCCCTGTTGATAAAGTCTCAGTTGACGAATCTGATCGCCTTCTCAAGATGGAAGAGACCTTACACAAACGCATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGTGCTATCCGCCGAGCTCGTGTTGGACTTAAGAACCCTAACCGGCCGATTGCCAGCTTCATCTTTTCTGGCCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACATTGGCCTCATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGACATGAGCGAATTTATGGAACGGCACACAGTCTCCAAACTCATTGGTTCACCTCCGGGATATGTTGGTTATACCGAGGGTGGTCAATTGACTGAGGCAGTTCGGCGCCGTCCCTATACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTCTTCAACATGATGCTTCAAATTCTGGAAGATGGGAGGCTAACAGATAGTAAGGGAAGAACCGTCGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTCGCATAGGATTTGACCTTGACTATGATGAGAAGGACAGCAGTTATAACCGAATCAAAAGCTTGGTGACCGAGGAGCTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGCTGGATGAAATGATTGTTTTCAGGCAACTTACAAAACTGGAGGTTAAGGAGATAGCTGATATAATGCTGAAGGAGGTGTTCGAGAGACTGAAAACCAAAGAGATTGAGCTCTCGGTGACAGAGAGATTTAGGGAGAGAGTGGTTGACGAAGGTTATAATCCTAGTTATGGTGCCAGACCTCTAAGAAGAGCTATAATGCGACTTTTGGAAGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGTGACTCTGTTATAGTGGATGCTGATTCTGATGGAAATGTGATTGTGCTCAATGGTAGTAGTGGTGCTCCAAATTCATTGCCCGAGTCTCTTCCTGTGTAA

Protein sequence

>MS.gene32894.t1

MSRVLAQSINVPGLVAGRRHVNNNNGSARSRPRSVRMMYATQTATMRMSGFSGLRPLNSLDSMFRPRQDFHSKVLTQIGTNRARGGRGSRCVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIGAKVLKSMGINLKDSRVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGEGADNVGATVGSGSSNSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKQVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIVKEKDEAVRNQEFEKAGELRDKEMDLKAQISALIQKNKEMSKAESEAGDVGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEETLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGAPNSLPESLPV