AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000515

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000515.t1 MTR_8g100040 99.676 926 3 0 1 926 1 926 0.0 1866
MS.gene000515.t1 MTR_3g102830 96.117 927 35 1 1 926 1 927 0.0 1806
MS.gene000515.t1 MTR_3g498725 90.173 926 87 2 1 926 1 922 0.0 1659
MS.gene000515.t1 MTR_3g461000 50.605 826 331 13 95 911 1 758 0.0 773
MS.gene000515.t1 MTR_3g098310 46.234 863 409 13 95 911 100 953 0.0 746
MS.gene000515.t1 MTR_6g013660 45.495 888 388 16 89 902 71 936 0.0 732
MS.gene000515.t1 MTR_7g012820 44.926 877 390 15 97 902 86 940 0.0 723
MS.gene000515.t1 MTR_7g012820 44.926 877 390 15 97 902 15 869 0.0 721
MS.gene000515.t1 MTR_3g106160 42.165 970 443 14 5 902 26 949 0.0 719
MS.gene000515.t1 MTR_4g109450 41.326 905 433 15 97 925 4 886 0.0 658
MS.gene000515.t1 MTR_4g109450 42.686 834 389 14 97 863 4 815 0.0 632
MS.gene000515.t1 MTR_7g028970 42.159 880 417 17 98 909 5 860 0.0 630
MS.gene000515.t1 MTR_3g098310 45.402 696 328 10 95 745 100 788 0.0 583
MS.gene000515.t1 MTR_6g048860 89.873 158 12 1 231 388 112 265 1.56e-87 284
MS.gene000515.t1 MTR_2g099075 40.606 330 179 3 581 909 143 456 1.04e-75 256
MS.gene000515.t1 MTR_2g006950 36.962 395 216 7 507 898 11 375 2.56e-71 247
MS.gene000515.t1 MTR_2g006950 33.803 213 109 5 701 909 371 555 7.12e-27 117
MS.gene000515.t1 MTR_1g076440 84.762 105 16 0 128 232 7 111 7.75e-50 179
MS.gene000515.t1 MTR_1g076440 65.891 129 33 2 669 797 158 275 2.03e-42 157
MS.gene000515.t1 MTR_1g076440 91.892 37 1 1 890 926 276 310 4.99e-12 68.6
MS.gene000515.t1 MTR_1614s0010 37.313 201 107 4 676 874 1 184 3.24e-29 115
MS.gene000515.t1 MTR_5g098360 41.000 100 58 1 591 690 69 167 1.47e-19 87.4
MS.gene000515.t1 MTR_5g011550 25.373 201 144 4 29 224 15 214 1.42e-12 68.9
MS.gene000515.t1 MTR_7g096480 29.661 118 50 1 578 695 11 95 1.90e-11 65.5
MS.gene000515.t1 MTR_4g129230 26.946 167 99 3 595 761 657 800 8.99e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000515.t1 AT5G50920 85.791 929 123 4 2 926 5 928 0.0 1553
MS.gene000515.t1 AT3G48870 84.146 902 134 2 31 926 22 920 0.0 1488
MS.gene000515.t1 AT3G48870 84.146 902 134 2 31 926 53 951 0.0 1484
MS.gene000515.t1 AT3G48870 84.146 902 134 2 31 926 53 951 0.0 1484
MS.gene000515.t1 AT3G48870 84.146 902 134 2 31 926 53 951 0.0 1484
MS.gene000515.t1 AT5G51070 48.951 858 382 13 94 906 78 924 0.0 772
MS.gene000515.t1 AT5G15450 45.132 873 393 14 97 902 80 933 0.0 716
MS.gene000515.t1 AT2G25140 44.469 895 401 16 90 909 77 950 0.0 716
MS.gene000515.t1 AT1G74310 42.325 886 426 14 97 919 4 867 0.0 666
MS.gene000515.t1 AT1G74310 43.133 830 388 13 97 863 4 812 0.0 640
MS.gene000515.t1 AT4G14670 43.662 568 241 10 190 699 77 623 2.55e-143 440
MS.gene000515.t1 AT3G45450 61.096 365 95 7 95 457 1 320 4.49e-124 379
MS.gene000515.t1 AT4G30350 30.994 171 105 3 591 761 563 720 1.45e-13 75.5
MS.gene000515.t1 AT4G12060 31.111 135 90 2 91 222 86 220 6.26e-11 64.3
MS.gene000515.t1 AT4G25370 28.906 128 88 2 98 222 85 212 9.83e-11 63.5

Find 255 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAGTGACAGAGAGATTT+AGG 0.133625 4.3:-7053686 MS.gene000515:CDS
TTCAGTATTTGTATGGTTTC+AGG 0.145881 4.3:+7055583 None:intergenic
TTCTTTCCCTCTATGGTTTC+GGG 0.165534 4.3:+7056366 None:intergenic
CAGATTCTATTGGGTCTTAT+TGG 0.178181 4.3:-7057521 MS.gene000515:CDS
AGCACGTGTTCTTGAAAATT+TGG 0.179133 4.3:-7056931 MS.gene000515:CDS
CGGATCTGAGCACTTGCTTT+TGG 0.186791 4.3:-7056982 MS.gene000515:CDS
GTCAAAATCACAGGGAAAAT+TGG 0.189560 4.3:-7056541 MS.gene000515:intron
AAAATAATCCTTGTCTTATT+GGG 0.195129 4.3:-7056455 MS.gene000515:CDS
CTCTGCTAGCTTGGTCAAAT+TGG 0.202101 4.3:+7056656 None:intergenic
ACATTACACAAACGCATTAT+TGG 0.214703 4.3:-7054404 MS.gene000515:CDS
ATTACGTACTTTGAATTCTT+TGG 0.223172 4.3:-7057741 MS.gene000515:CDS
CTTCTTTCCCTCTATGGTTT+CGG 0.225647 4.3:+7056365 None:intergenic
CTGTTAGCCTCCCATCTTCT+AGG 0.244391 4.3:+7054018 None:intergenic
ACCAACCTTCTTTCCCTCTA+TGG 0.244485 4.3:+7056359 None:intergenic
CACTGAGAGCTCAATCTCTT+TGG 0.250312 4.3:+7053701 None:intergenic
TCAAGACCTCTTGCCTCTTC+AGG 0.272725 4.3:+7054989 None:intergenic
AGGAATCATGTCGAGGGTTT+TGG 0.273755 4.3:-7057903 None:intergenic
GATGAAGTGCACACTCTAAT+TGG 0.276610 4.3:-7056025 MS.gene000515:CDS
AAGCTGGCAATTGGCCTGTT+AGG 0.277196 4.3:+7054317 None:intergenic
GTTGAGGTAGAGAAGATAAT+TGG 0.296604 4.3:-7057434 MS.gene000515:CDS
ACGAGCCATAATGCGACTTT+TGG 0.309688 4.3:-7053610 MS.gene000515:CDS
GTTGGCTCTGGCACTTTAAC+AGG 0.313503 4.3:+7055610 None:intergenic
CGCATTATGGCTCGTCTTAG+AGG 0.322921 4.3:+7053618 None:intergenic
TCTTGATATGAGTGAATTCA+TGG 0.325696 4.3:-7054204 MS.gene000515:CDS
AGCTGTCACATCAATATATT+AGG 0.329090 4.3:-7055489 MS.gene000515:intron
TGGAACTGAACAGATTCTAT+TGG 0.339561 4.3:-7057531 MS.gene000515:CDS
GTCCTCCAAAAGTCGCATTA+TGG 0.346892 4.3:+7053605 None:intergenic
GCACGTGTTCTTGAAAATTT+GGG 0.360653 4.3:-7056930 MS.gene000515:CDS
GTAGGTTATAACCCTAGATA+TGG 0.368738 4.3:-7056149 MS.gene000515:intron
CTACAAGTAGACCCATATCT+AGG 0.370031 4.3:+7056137 None:intergenic
TTTCAGGCAACTCACTAAAC+TGG 0.370563 4.3:-7053778 MS.gene000515:CDS
GTGAGGGTGCTGATAGTGTT+GGG 0.370689 4.3:-7056737 MS.gene000515:CDS
TGAACGTGTCACTCAAATCT+TGG 0.375274 4.3:-7056490 MS.gene000515:CDS
TGGAGGTGAACCAATGAGTT+TGG 0.375955 4.3:+7054166 None:intergenic
CTCTTGGCACGTGGGGTAAA+CGG 0.377703 4.3:+7057380 None:intergenic
AGAGCATCTGGCAATGAATC+TGG 0.383859 4.3:+7053474 None:intergenic
TTTCCAGGTCACAATTATAT+CGG 0.383974 4.3:-7057002 MS.gene000515:intron
CTCAGTGACAGAGAGATTTA+GGG 0.384010 4.3:-7053685 MS.gene000515:CDS
TCAGGAGGAAGCAAGGCGGC+TGG 0.390101 4.3:-7057567 MS.gene000515:CDS
GGAACTGAACAGATTCTATT+GGG 0.395625 4.3:-7057530 MS.gene000515:CDS
CCTTGTCTTATTGGGGAACC+TGG 0.397535 4.3:-7056447 MS.gene000515:CDS
TCCCGAGTAACTAGACAGTC+TGG 0.401943 4.3:+7057763 None:intergenic
AAGTCCTTTCAGTATTTGTA+TGG 0.403240 4.3:+7055576 None:intergenic
AAGGTTATAATCCTAGTTAT+GGG 0.408036 4.3:-7053647 MS.gene000515:CDS
CCACAACTCTAGATGAATAT+AGG 0.408234 4.3:-7055675 MS.gene000515:CDS
AAGATAATTGGAAGGGGAAG+TGG 0.413810 4.3:-7057422 MS.gene000515:CDS
GAAGGTTATAATCCTAGTTA+TGG 0.419366 4.3:-7053648 MS.gene000515:CDS
GTTGGGGCTACCGTTGGCTC+TGG 0.423794 4.3:-7056720 MS.gene000515:CDS
GGTCTTATTGGTGAAGGAAC+TGG 0.424307 4.3:-7057509 MS.gene000515:CDS
TGGGAGGCTAACAGATAGTA+AGG 0.426292 4.3:-7054009 MS.gene000515:CDS
TTAGGCCAGAGTTCTTGAAT+AGG 0.427859 4.3:-7053818 MS.gene000515:CDS
ATGCCAACTTTGGAGGAGTA+TGG 0.429557 4.3:-7056681 MS.gene000515:CDS
GAGAGTCTTGGAACTCTCAT+TGG 0.431062 4.3:-7057360 MS.gene000515:CDS
TACAACATATTGTTGCCTCT+TGG 0.434175 4.3:-7054490 MS.gene000515:CDS
CATATTGTTGCCTCTTGGAC+TGG 0.442718 4.3:-7054485 MS.gene000515:CDS
GAAAAGATGAAGCTGGCAAT+TGG 0.445821 4.3:+7054308 None:intergenic
AAGCAGTAGAAGCCATTAGC+AGG 0.446141 4.3:-7054373 MS.gene000515:CDS
GCATTGGCCTCATACTACTT+TGG 0.446338 4.3:-7054248 MS.gene000515:CDS
GCCTGGGTGCGAATATTAGT+TGG 0.447285 4.3:+7056900 None:intergenic
TCAACCGAGACTTTGTCAAC+AGG 0.449665 4.3:+7054458 None:intergenic
TGGAATCGCCTCTCCAAAGC+TGG 0.451335 4.3:+7055634 None:intergenic
ATCAAATCTATAGCTTTGTC+AGG 0.451675 4.3:+7055140 None:intergenic
ATACTTATGTTGCAGTGTAT+AGG 0.455082 4.3:-7055700 MS.gene000515:intron
GGTGAGGGTGCTGATAGTGT+TGG 0.456497 4.3:-7056738 MS.gene000515:CDS
AGTTACCTCCTCTGCTAGCT+TGG 0.457680 4.3:+7056647 None:intergenic
TAACAATAAGATGCCAACTT+TGG 0.458624 4.3:-7056691 MS.gene000515:CDS
TTGGACTTAAGAACCCTAAC+AGG 0.460747 4.3:-7054331 MS.gene000515:CDS
GTGCATGTTGAAGTCGGACT+CGG 0.460857 4.3:+7055102 None:intergenic
CAGGAGGAAGCAAGGCGGCT+GGG 0.462625 4.3:-7057566 MS.gene000515:CDS
AACAAGGCAGAGAGTGAGGC+AGG 0.463527 4.3:-7054545 MS.gene000515:CDS
AGCATCATGTTGAAGACATC+AGG 0.464962 4.3:+7054047 None:intergenic
AGGAACTGGTATTGCGGCTA+AGG 0.466745 4.3:-7057495 MS.gene000515:CDS
GAGGTCTTGAAAAGGAGGTT+AGG 0.468047 4.3:-7054976 MS.gene000515:CDS
AAACTCATTGGTTCACCTCC+AGG 0.469560 4.3:-7054164 MS.gene000515:CDS
AGGAGCTGAAACAATACTTT+AGG 0.470372 4.3:-7053836 MS.gene000515:CDS
GAGAGTGAGGCAGGAGATGT+AGG 0.476103 4.3:-7054536 MS.gene000515:CDS
AGCTGGCAATTGGCCTGTTA+GGG 0.476624 4.3:+7054318 None:intergenic
GATAGCGGATATAATGTTGA+AGG 0.477705 4.3:-7053745 MS.gene000515:CDS
GTCAACTGACTGAGGCAGTT+CGG 0.478584 4.3:-7054118 MS.gene000515:CDS
TGGCTGAAAAGATGCTTGCT+AGG 0.481331 4.3:-7053578 MS.gene000515:CDS
ATGCTTCAAATCCTAGAAGA+TGG 0.482486 4.3:-7054029 MS.gene000515:CDS
AGAGCTAAGGGATAAAGAAA+TGG 0.482796 4.3:-7054615 MS.gene000515:CDS
AGAGGCCTGGCCCCATAACT+AGG 0.483439 4.3:+7053636 None:intergenic
TGTGGCTGCCTACCCACAAC+AGG 0.484594 4.3:+7056516 None:intergenic
GAACGTGTCACTCAAATCTT+GGG 0.488197 4.3:-7056489 MS.gene000515:CDS
ACCCAGACTGTCTAGTTACT+CGG 0.490173 4.3:-7057765 MS.gene000515:CDS
CACACAGTCTCCAAACTCAT+TGG 0.490778 4.3:-7054176 MS.gene000515:CDS
ACTCATATCAAGACGAATCA+TGG 0.492017 4.3:+7054214 None:intergenic
CAAAGTAATTATGTTGGCTC+AGG 0.492161 4.3:-7057585 MS.gene000515:CDS
ACTCACTAAACTGGAGGTTA+AGG 0.492407 4.3:-7053769 MS.gene000515:CDS
TCGACGGATAGCCCTGCTAA+TGG 0.493494 4.3:+7054361 None:intergenic
CTTGCTCAACGGATTGCAAA+TGG 0.493862 4.3:-7056396 MS.gene000515:CDS
TATGGCTCGTCTTAGAGGCC+TGG 0.495631 4.3:+7053623 None:intergenic
GTCTGAATTGGCTAAGGCAT+TGG 0.499413 4.3:-7054264 MS.gene000515:CDS
GCACCTTAGAATGAAAATCT+TGG 0.499615 4.3:+7057699 None:intergenic
TGAGTGACACGTTCAATTTG+TGG 0.499806 4.3:+7056498 None:intergenic
ATAGATTTGATTGATGAAGC+TGG 0.500246 4.3:-7055128 MS.gene000515:CDS
TCAAAGAGTACAACCGTGTA+GGG 0.502030 4.3:+7054089 None:intergenic
AGGTAGAGAAGATAATTGGA+AGG 0.502196 4.3:-7057430 MS.gene000515:CDS
CCTATATTCATCTAGAGTTG+TGG 0.502316 4.3:+7055675 None:intergenic
TCTAAGGTGCTCACTCAGAT+TGG 0.504328 4.3:-7057686 MS.gene000515:CDS
GGGAAAATTGGATCCTGTTG+TGG 0.505719 4.3:-7056529 MS.gene000515:CDS
AGAGGGCGACTCTGTTATAG+TGG 0.506335 4.3:-7053547 MS.gene000515:CDS
AGTAATTATGTTGGCTCAGG+AGG 0.506593 4.3:-7057582 MS.gene000515:CDS
TGGTGTGGGGAAGTCTGAAT+TGG 0.506886 4.3:-7054276 MS.gene000515:CDS
GTTTCAGGAACAGTTGGCTC+TGG 0.507634 4.3:+7055598 None:intergenic
GGAAAATTGGATCCTGTTGT+GGG 0.508304 4.3:-7056528 MS.gene000515:CDS
AATGTCCCTGGTCTAGTGGC+TGG 0.508918 4.3:-7057869 MS.gene000515:CDS
ATCTGATCGTCTTCTCAAGA+TGG 0.509066 4.3:-7054432 MS.gene000515:CDS
CAATAAGATGCCAACTTTGG+AGG 0.509184 4.3:-7056688 MS.gene000515:CDS
CTTCGACCAGCCACTAGACC+AGG 0.509991 4.3:+7057863 None:intergenic
GGAAGCAGTGTGATCGAGAA+AGG 0.510531 4.3:-7053936 MS.gene000515:CDS
TGAGAGTTCCAAGACTCTCT+TGG 0.510742 4.3:+7057364 None:intergenic
ATACTTGCAGTTACCTGAAG+AGG 0.512391 4.3:-7055002 MS.gene000515:intron
TCAGTATAACCAACATATCC+TGG 0.513853 4.3:+7054146 None:intergenic
CTGAATAGGCTGGAGAGCTA+AGG 0.514789 4.3:-7054628 MS.gene000515:intron
CTTATAATGACATCAAATGT+TGG 0.515383 4.3:-7053957 MS.gene000515:CDS
GCTCTGGCACTTTAACAGGT+TGG 0.519765 4.3:+7055614 None:intergenic
TTCAGATCCAAAGTAGTATG+AGG 0.520690 4.3:+7054241 None:intergenic
GGTTCACCTCCAGGATATGT+TGG 0.521392 4.3:-7054155 MS.gene000515:CDS
CTATTGGGTCTTATTGGTGA+AGG 0.521471 4.3:-7057515 MS.gene000515:CDS
GTGCCATACTCCTCCAAAGT+TGG 0.521933 4.3:+7056678 None:intergenic
TTGGAGGAAGCTCGTCAACT+TGG 0.522024 4.3:-7057341 MS.gene000515:intron
GGAGGTTAGGCAGATAGTAA+AGG 0.522104 4.3:-7054963 MS.gene000515:CDS
AAAGTATTGTTTCAGCTCCT+CGG 0.523545 4.3:+7053839 None:intergenic
GATTGGTACTAATCGAGCTA+AGG 0.525728 4.3:-7057669 MS.gene000515:CDS
TGTATGGTTTCAGGAACAGT+TGG 0.528654 4.3:+7055592 None:intergenic
GCGCAGTCGATTAATGTCCC+TGG 0.531046 4.3:-7057881 MS.gene000515:CDS
ATGGCTGTCTTTCCGACACC+AGG 0.532374 4.3:+7056429 None:intergenic
CTCCGTAAAACGCTCAAACA+TGG 0.532748 4.3:+7057616 None:intergenic
CTGGTCTAGTGGCTGGTCGA+AGG 0.533789 4.3:-7057862 MS.gene000515:CDS
AAATAATCCTTGTCTTATTG+GGG 0.534007 4.3:-7056454 MS.gene000515:CDS
GAGAAAGGAGGCCGTCGCAT+AGG 0.534709 4.3:-7053921 MS.gene000515:CDS
TCTTGCTAGAGGTGAACTAC+AGG 0.537146 4.3:-7055951 MS.gene000515:intron
TCCAAGACTCTCTTGGCACG+TGG 0.537851 4.3:+7057371 None:intergenic
ATTGTGCTCAACGGTAGTAC+TGG 0.541363 4.3:-7053501 MS.gene000515:CDS
GTTATTCGCATGGTTGGTGA+GGG 0.544259 4.3:-7056753 MS.gene000515:CDS
ATAATCCTAGTTATGGGGCC+AGG 0.544978 4.3:-7053641 MS.gene000515:CDS
GTAGAGAAGATAATTGGAAG+GGG 0.545295 4.3:-7057428 MS.gene000515:CDS
ATCTTTCTTCAAATTCTCCA+CGG 0.545588 4.3:+7056101 None:intergenic
CAAGAGCCTCATCAGTATAA+CGG 0.549394 4.3:+7055524 None:intergenic
AGAGGCAAGAGGTCTTGAAA+AGG 0.550450 4.3:-7054984 MS.gene000515:CDS
TGAATAGGCTGGAGAGCTAA+GGG 0.551002 4.3:-7054627 MS.gene000515:intron
GTGCACACTCTAATTGGAGC+AGG 0.551279 4.3:-7056019 MS.gene000515:CDS
TTAGAATGAAAATCTTGGCC+AGG 0.551842 4.3:+7057704 None:intergenic
AATCGAGCTAAGGGTGGTAG+AGG 0.552487 4.3:-7057659 MS.gene000515:CDS
CGAAACCATAGAGGGAAAGA+AGG 0.554723 4.3:-7056364 MS.gene000515:intron
CCTAAAAGATGCACGTGTTG+AGG 0.555604 4.3:-7057450 MS.gene000515:CDS
GATAGTGTTGGGGCTACCGT+TGG 0.556248 4.3:-7056726 MS.gene000515:CDS
GGCTGAAAAGATGCTTGCTA+GGG 0.556352 4.3:-7053577 MS.gene000515:CDS
GGTAGAGAAGATAATTGGAA+GGG 0.556988 4.3:-7057429 MS.gene000515:CDS
TGCATGTTGAAGTCGGACTC+GGG 0.557579 4.3:+7055103 None:intergenic
AGTTCACCTCTAGCAAGAGC+TGG 0.557640 4.3:+7055956 None:intergenic
AGCTATCAAAGTAATTATGT+TGG 0.558080 4.3:-7057591 MS.gene000515:CDS
GGTTATTCGCATGGTTGGTG+AGG 0.559144 4.3:-7056754 MS.gene000515:CDS
TCGCAACCAAGAGTTTGAAA+AGG 0.559598 4.3:-7054924 MS.gene000515:intron
TGCTTCAAATCCTAGAAGAT+GGG 0.561107 4.3:-7054028 MS.gene000515:CDS
AGTCTTGGAACTCTCATTGG+AGG 0.561170 4.3:-7057357 MS.gene000515:CDS
TCAAGCCTATTCAAGAACTC+TGG 0.561431 4.3:+7053813 None:intergenic
CCCACGTGCCAAGAGAGTCT+TGG 0.563576 4.3:-7057372 MS.gene000515:CDS
TTGCTGAAGGTCTTGCTCAA+CGG 0.563976 4.3:-7056407 MS.gene000515:CDS
GATGAACAAGGCAGAGAGTG+AGG 0.564477 4.3:-7054549 MS.gene000515:CDS
TAAGTCCAACACGGGCTCGA+CGG 0.564557 4.3:+7054345 None:intergenic
CCCAGACTGTCTAGTTACTC+GGG 0.564773 4.3:-7057764 MS.gene000515:CDS
GCTATCCGTCGAGCCCGTGT+TGG 0.565432 4.3:-7054350 MS.gene000515:CDS
TACAAGTAGACCCATATCTA+GGG 0.567209 4.3:+7056138 None:intergenic
GATTAATGTCCCTGGTCTAG+TGG 0.568714 4.3:-7057873 MS.gene000515:CDS
TGACCTTGACTATGATGAGA+AGG 0.570760 4.3:-7053895 MS.gene000515:CDS
ATTGGAGCAGGAGCAGCTGA+AGG 0.572423 4.3:-7056007 MS.gene000515:CDS
TTGGAGCAGGAGCAGCTGAA+GGG 0.573404 4.3:-7056006 MS.gene000515:CDS
GGTCTTCTTAGAGAGGGTGA+AGG 0.574148 4.3:-7056960 MS.gene000515:CDS
GAACAGGTTATTCGCATGGT+TGG 0.577586 4.3:-7056759 MS.gene000515:intron
AGCTGAAGGGGCAATTGATG+CGG 0.578062 4.3:-7055993 MS.gene000515:CDS
AGAGAGATTTAGGGAGAGAG+TGG 0.578335 4.3:-7053676 MS.gene000515:CDS
CAGGCAACTCACTAAACTGG+AGG 0.580885 4.3:-7053775 MS.gene000515:CDS
ATGGGAACAGGTTATTCGCA+TGG 0.580936 4.3:-7056763 MS.gene000515:intron
ATTGGTACTAATCGAGCTAA+GGG 0.582672 4.3:-7057668 MS.gene000515:CDS
TTTCTGGCCCTACTGGTGTG+GGG 0.583111 4.3:-7054289 MS.gene000515:CDS
TGGAGCAGGAGCAGCTGAAG+GGG 0.584707 4.3:-7056005 MS.gene000515:CDS
GGCAAGAGGTCTTGAAAAGG+AGG 0.585520 4.3:-7054981 MS.gene000515:CDS
AGGGCCAGAAAAGATGAAGC+TGG 0.586569 4.3:+7054301 None:intergenic
TAGGTTATAACCCTAGATAT+GGG 0.587092 4.3:-7056148 MS.gene000515:CDS
CATCAGTATAACGGAGCTTG+TGG 0.587701 4.3:+7055533 None:intergenic
TTGGATTCAATGTTTAGACC+TGG 0.588863 4.3:-7057722 MS.gene000515:CDS
CTTATTGGGGAACCTGGTGT+CGG 0.589543 4.3:-7056441 MS.gene000515:CDS
GATATGGGTCTACTTGTAGC+GGG 0.589741 4.3:-7056133 MS.gene000515:CDS
TTATAACAGAATCAAGAGCT+TGG 0.591045 4.3:-7053865 MS.gene000515:CDS
GCTTGCTAGGGAGATTAAAG+AGG 0.591894 4.3:-7053565 MS.gene000515:CDS
GGATATGTTGGTTATACTGA+GGG 0.591922 4.3:-7054143 MS.gene000515:CDS
TGATGTCCCCGAAACCATAG+AGG 0.595369 4.3:-7056373 MS.gene000515:CDS
TCAGACTTCCCCACACCAGT+AGG 0.597091 4.3:+7054281 None:intergenic
GGAAAGACAGCCATTGCTGA+AGG 0.598239 4.3:-7056420 MS.gene000515:CDS
TCTTAGAGAGGGTGAAGGTG+TGG 0.599604 4.3:-7056955 MS.gene000515:CDS
AGTTCGGCGTCGTCCCTACA+CGG 0.600953 4.3:-7054102 MS.gene000515:CDS
TGAGGGTGCTGATAGTGTTG+GGG 0.601686 4.3:-7056736 MS.gene000515:CDS
GGGGAAGTCTGAATTGGCTA+AGG 0.601878 4.3:-7054270 MS.gene000515:CDS
TCTTTCCCTCTATGGTTTCG+GGG 0.604706 4.3:+7056367 None:intergenic
CAATTCAGGAATCATGTCGA+GGG 0.605004 4.3:-7057909 None:intergenic
CCCGAGTAACTAGACAGTCT+GGG 0.606554 4.3:+7057764 None:intergenic
TATCCCTGTTGACAAAGTCT+CGG 0.606924 4.3:-7054462 MS.gene000515:CDS
TTTGACCAAGCTAGCAGAGG+AGG 0.607369 4.3:-7056652 MS.gene000515:intron
CAGACTTCCCCACACCAGTA+GGG 0.610250 4.3:+7054282 None:intergenic
AGCGGATATAATGTTGAAGG+AGG 0.610347 4.3:-7053742 MS.gene000515:CDS
CATGTTGAAGACATCAGGAT+GGG 0.610516 4.3:+7054052 None:intergenic
GAAACCATACAAATACTGAA+AGG 0.611115 4.3:-7055580 MS.gene000515:CDS
TGTTGGCTCAGGAGGAAGCA+AGG 0.612819 4.3:-7057574 MS.gene000515:CDS
AGTCCGACTTCAACATGCAC+AGG 0.614688 4.3:-7055099 MS.gene000515:intron
TTGAAACCAGCTCTTGCTAG+AGG 0.615304 4.3:-7055962 MS.gene000515:CDS
TGGTGAAGGAACTGGTATTG+CGG 0.615599 4.3:-7057501 MS.gene000515:CDS
CAGTTACCTGAAGAGGCAAG+AGG 0.619646 4.3:-7054995 MS.gene000515:CDS
GTTACTACTTCCAGAGCCAA+CGG 0.622846 4.3:+7056710 None:intergenic
CCAAGACTCTCTTGGCACGT+GGG 0.623311 4.3:+7057372 None:intergenic
CAAGACTCTCTTGGCACGTG+GGG 0.624750 4.3:+7057373 None:intergenic
AATTGGATCCTGTTGTGGGT+AGG 0.625477 4.3:-7056524 MS.gene000515:CDS
TTGAGCAAGACCTTCAGCAA+TGG 0.626338 4.3:+7056410 None:intergenic
TCATGTTGAAGACATCAGGA+TGG 0.628699 4.3:+7054051 None:intergenic
AAGGAGCAGCTAGATCAAGA+AGG 0.632838 4.3:-7057823 MS.gene000515:CDS
TGTCCTTCTCATCATAGTCA+AGG 0.633612 4.3:+7053892 None:intergenic
AGGGTTCTTAAGTCCAACAC+GGG 0.633806 4.3:+7054337 None:intergenic
CAAGCTCCGTTATACTGATG+AGG 0.634549 4.3:-7055530 MS.gene000515:CDS
ATCAAAGAGTACAACCGTGT+AGG 0.635792 4.3:+7054088 None:intergenic
AATCAAGAGCTTGGTGACCG+AGG 0.635925 4.3:-7053856 MS.gene000515:CDS
AGGGAGAGAGTGGTCGACGA+AGG 0.636473 4.3:-7053666 MS.gene000515:CDS
AGGATATGTTGGTTATACTG+AGG 0.636582 4.3:-7054144 MS.gene000515:CDS
AGATATGGGTCTACTTGTAG+CGG 0.638102 4.3:-7056134 MS.gene000515:CDS
CAAGGTCAAATCCTATGCGA+CGG 0.639546 4.3:+7053910 None:intergenic
CAACCGAGACTTTGTCAACA+GGG 0.642126 4.3:+7054459 None:intergenic
ACTGGAGGTTAAGGAGATAG+CGG 0.642477 4.3:-7053760 MS.gene000515:CDS
ACAATTCAGGAATCATGTCG+AGG 0.643511 4.3:-7057910 None:intergenic
CTTGCTAGGGAGATTAAAGA+GGG 0.645642 4.3:-7053564 MS.gene000515:CDS
TTCGACCAGCCACTAGACCA+GGG 0.645722 4.3:+7057864 None:intergenic
ATACCTGTGCATGTTGAAGT+CGG 0.645864 4.3:+7055096 None:intergenic
AGCAGTAGAAGCCATTAGCA+GGG 0.646108 4.3:-7054372 MS.gene000515:CDS
TCTGGGTGCAGCAGTTCGTG+TGG 0.646472 4.3:+7057781 None:intergenic
AGGTTATAATCCTAGTTATG+GGG 0.648482 4.3:-7053646 MS.gene000515:CDS
GATGTCCCCGAAACCATAGA+GGG 0.650692 4.3:-7056372 MS.gene000515:CDS
TATGTTGGTTATACTGAGGG+TGG 0.650997 4.3:-7054140 MS.gene000515:CDS
CCAGGTTCCCCAATAAGACA+AGG 0.651573 4.3:+7056447 None:intergenic
ATATGAGTGAATTCATGGAA+AGG 0.652142 4.3:-7054199 MS.gene000515:CDS
GGGAGGCTAACAGATAGTAA+GGG 0.655267 4.3:-7054008 MS.gene000515:CDS
AACAGGGATACCAGTCCAAG+AGG 0.658998 4.3:+7054475 None:intergenic
TAGGGTTCTTAAGTCCAACA+CGG 0.660525 4.3:+7054336 None:intergenic
ATAGTGGATGCTGATTCTGA+TGG 0.662089 4.3:-7053531 MS.gene000515:CDS
AGGCATGTCAATAACAACAA+AGG 0.662987 4.3:-7057842 MS.gene000515:CDS
TTCAAATCCTAGAAGATGGG+AGG 0.665767 4.3:-7054025 MS.gene000515:CDS
TCCAACTAATATTCGCACCC+AGG 0.666203 4.3:-7056901 MS.gene000515:intron
CAATTTGACCAAGCTAGCAG+AGG 0.667069 4.3:-7056655 MS.gene000515:CDS
AGATAGTAAGGGAAGAACTG+TGG 0.671130 4.3:-7053997 MS.gene000515:CDS
TGAGGGTGGTCAACTGACTG+AGG 0.676897 4.3:-7054126 MS.gene000515:CDS
AGCAGTGTGATCGAGAAAGG+AGG 0.677611 4.3:-7053933 MS.gene000515:CDS
GGTACTAATCGAGCTAAGGG+TGG 0.687277 4.3:-7057665 MS.gene000515:CDS
GGAAACGTGATTGTGCTCAA+CGG 0.722695 4.3:-7053510 MS.gene000515:CDS
GTATAACCAACATATCCTGG+AGG 0.727417 4.3:+7054149 None:intergenic
GTAGCGGGAACTAAATACCG+TGG 0.739992 4.3:-7056118 MS.gene000515:CDS
TGGCTCAGGAGGAAGCAAGG+CGG 0.762957 4.3:-7057571 MS.gene000515:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATCAAAAACAATTTA+TGG + chr4.3:7055046-7055065 None:intergenic 10.0%
!! TAAAATCAAAAACAATTTAT+GGG + chr4.3:7055045-7055064 None:intergenic 10.0%
!! ATTTGGATATATATAATTGA+AGG + chr4.3:7056664-7056683 None:intergenic 15.0%
!!! AATTGTTTTTGATTTTATTC+AGG - chr4.3:7055048-7055067 MS.gene000515:intron 15.0%
!!! AGAATTTTTTTTTATAGTTC+TGG - chr4.3:7055959-7055978 MS.gene000515:CDS 15.0%
!!! ATTGTTTTACAACATTATTT+TGG - chr4.3:7056050-7056069 MS.gene000515:CDS 15.0%
!!! ATTGTTTTTGATTTTATTCA+GGG - chr4.3:7055049-7055068 MS.gene000515:intron 15.0%
!!! GTTCTTTTGTTTATTTTATT+TGG - chr4.3:7054263-7054282 MS.gene000515:CDS 15.0%
!! AAAAATAATCCTTGTCTTAT+TGG - chr4.3:7054904-7054923 MS.gene000515:intron 20.0%
!! AAAATATAATGTAATCTCAC+TGG + chr4.3:7056538-7056557 None:intergenic 20.0%
!! AAATAAACAAAAGAACAGAA+AGG + chr4.3:7054259-7054278 None:intergenic 20.0%
!! AATGTTGTAAAACAATTCAA+AGG + chr4.3:7056046-7056065 None:intergenic 20.0%
!! AGAAAGATTGAAAAAACTAA+TGG - chr4.3:7055274-7055293 MS.gene000515:intron 20.0%
!! TAAATTCTTAATGATCACTT+TGG - chr4.3:7055599-7055618 MS.gene000515:CDS 20.0%
!!! AAAATAATCCTTGTCTTATT+GGG - chr4.3:7054905-7054924 MS.gene000515:intron 20.0%
!!! AATAAGACAAGGATTATTTT+TGG + chr4.3:7054905-7054924 None:intergenic 20.0%
!!! TTGTTTTTGATTTTATTCAG+GGG - chr4.3:7055050-7055069 MS.gene000515:intron 20.0%
! AAATTCCAGATGATTAACTT+CGG + chr4.3:7056014-7056033 None:intergenic 25.0%
! AAGATTGAAAAAACTAATGG+AGG - chr4.3:7055277-7055296 MS.gene000515:intron 25.0%
! AAGGTTATAATCCTAGTTAT+GGG - chr4.3:7057713-7057732 MS.gene000515:CDS 25.0%
! AGCACTTATAGAAAAAAACA+AGG - chr4.3:7056787-7056806 MS.gene000515:intron 25.0%
! AGCTATCAAAGTAATTATGT+TGG - chr4.3:7053769-7053788 MS.gene000515:CDS 25.0%
! ATTACGTACTTTGAATTCTT+TGG - chr4.3:7053619-7053638 MS.gene000515:CDS 25.0%
! ATTTATTAGCCAGAATGTAA+AGG + chr4.3:7056688-7056707 None:intergenic 25.0%
! CTGATTATAATTCTTAGATG+TGG - chr4.3:7055134-7055153 MS.gene000515:CDS 25.0%
! CTGGTATTACATGTTTAAAT+GGG - chr4.3:7055978-7055997 MS.gene000515:CDS 25.0%
! CTTATAATGACATCAAATGT+TGG - chr4.3:7057403-7057422 MS.gene000515:CDS 25.0%
! GTTGAAATTTATCCATGAAT+TGG - chr4.3:7054212-7054231 MS.gene000515:CDS 25.0%
! TCTGGTATTACATGTTTAAA+TGG - chr4.3:7055977-7055996 MS.gene000515:CDS 25.0%
! TGATACCTTAATTTCTGAAT+AGG - chr4.3:7056718-7056737 MS.gene000515:CDS 25.0%
!! AAATAATCCTTGTCTTATTG+GGG - chr4.3:7054906-7054925 MS.gene000515:intron 25.0%
!! TTCTTTTGACATCTCAAAAA+TGG - chr4.3:7055439-7055458 MS.gene000515:intron 25.0%
!! TTGATGAAATGATTGTTTTC+AGG - chr4.3:7057566-7057585 MS.gene000515:CDS 25.0%
!!! ATGTGGAATTTTAGTACTTT+CGG - chr4.3:7055151-7055170 MS.gene000515:CDS 25.0%
!!! TGTTTTTGATTTTATTCAGG+GGG - chr4.3:7055051-7055070 MS.gene000515:intron 25.0%
AAAAAACAAGGAGATGAACA+AGG - chr4.3:7056799-7056818 MS.gene000515:intron 30.0%
AAGTCCTTTCAGTATTTGTA+TGG + chr4.3:7055787-7055806 None:intergenic 30.0%
ACATCACGAAAGAGAAAAAT+TGG + chr4.3:7054801-7054820 None:intergenic 30.0%
ACATTACACAAACGCATTAT+TGG - chr4.3:7056956-7056975 MS.gene000515:CDS 30.0%
AGCAAAAATCAAGTCATGTT+TGG + chr4.3:7054143-7054162 None:intergenic 30.0%
AGCTGTCACATCAATATATT+AGG - chr4.3:7055871-7055890 MS.gene000515:intron 30.0%
AGGTTATAATCCTAGTTATG+GGG - chr4.3:7057714-7057733 MS.gene000515:CDS 30.0%
ATAAACCGAAGTTAATCATC+TGG - chr4.3:7056006-7056025 MS.gene000515:CDS 30.0%
ATACTTATGTTGCAGTGTAT+AGG - chr4.3:7055660-7055679 MS.gene000515:CDS 30.0%
ATAGATTTGATTGATGAAGC+TGG - chr4.3:7056232-7056251 MS.gene000515:intron 30.0%
ATATGAGTGAATTCATGGAA+AGG - chr4.3:7057161-7057180 MS.gene000515:intron 30.0%
ATCCAAATTCCTTTACATTC+TGG - chr4.3:7056676-7056695 MS.gene000515:CDS 30.0%
ATCTTTCTTCAAATTCTCCA+CGG + chr4.3:7055262-7055281 None:intergenic 30.0%
CTATGAAATGTAAAGACTGA+AGG - chr4.3:7055627-7055646 MS.gene000515:CDS 30.0%
GAAACCATACAAATACTGAA+AGG - chr4.3:7055780-7055799 MS.gene000515:intron 30.0%
GAAGATAACAAGATAGAAGA+AGG + chr4.3:7056130-7056149 None:intergenic 30.0%
GAAGGTTATAATCCTAGTTA+TGG - chr4.3:7057712-7057731 MS.gene000515:CDS 30.0%
GTTGAGTATCCTAAAAATGT+GGG + chr4.3:7056505-7056524 None:intergenic 30.0%
TAACAATAAGATGCCAACTT+TGG - chr4.3:7054669-7054688 MS.gene000515:intron 30.0%
TAGGTTATAACCCTAGATAT+GGG - chr4.3:7055212-7055231 MS.gene000515:intron 30.0%
TCTTGATATGAGTGAATTCA+TGG - chr4.3:7057156-7057175 MS.gene000515:intron 30.0%
TCTTTCCTAAAGTTCTATAG+CGG - chr4.3:7056594-7056613 MS.gene000515:intron 30.0%
TTATAACAGAATCAAGAGCT+TGG - chr4.3:7057495-7057514 MS.gene000515:CDS 30.0%
TTCAGTATTTGTATGGTTTC+AGG + chr4.3:7055780-7055799 None:intergenic 30.0%
TTGAGTATCCTAAAAATGTG+GGG + chr4.3:7056504-7056523 None:intergenic 30.0%
TTTCCAGGTCACAATTATAT+CGG - chr4.3:7054358-7054377 MS.gene000515:CDS 30.0%
TTTGTTTGAAGACATTGTAG+TGG - chr4.3:7056632-7056651 MS.gene000515:intron 30.0%
! ACATTCTGGCTAATAAATAG+TGG - chr4.3:7056690-7056709 MS.gene000515:CDS 30.0%
! CATTCTGGCTAATAAATAGT+GGG - chr4.3:7056691-7056710 MS.gene000515:CDS 30.0%
! TAACATAACCCCACATTTTT+AGG - chr4.3:7056493-7056512 MS.gene000515:CDS 30.0%
!! ATCAAATCTATAGCTTTGTC+AGG + chr4.3:7056223-7056242 None:intergenic 30.0%
!! TGTGGAATTTTAGTACTTTC+GGG - chr4.3:7055152-7055171 MS.gene000515:CDS 30.0%
!! TTTTGCTTTGAGTGATTTGT+TGG - chr4.3:7054156-7054175 MS.gene000515:CDS 30.0%
AAACAAAAGAACAGAAAGGC+CGG + chr4.3:7054255-7054274 None:intergenic 35.0%
AAAGATAAAACAGCCTTACG+TGG + chr4.3:7056579-7056598 None:intergenic 35.0%
AATCTTGTACTCCACTTGAT+GGG - chr4.3:7054579-7054598 MS.gene000515:CDS 35.0%
ACATAAATCACGCCAATTCA+TGG + chr4.3:7054227-7054246 None:intergenic 35.0%
ACCTTAATTTCTGAATAGGC+TGG - chr4.3:7056722-7056741 MS.gene000515:CDS 35.0%
ACTCATATCAAGACGAATCA+TGG + chr4.3:7057149-7057168 None:intergenic 35.0%
AGAGCTAAGGGATAAAGAAA+TGG - chr4.3:7056745-7056764 MS.gene000515:CDS 35.0%
AGCACGTGTTCTTGAAAATT+TGG - chr4.3:7054429-7054448 MS.gene000515:CDS 35.0%
AGCCAGAATGTAAAGGAATT+TGG + chr4.3:7056681-7056700 None:intergenic 35.0%
AGGAGCTGAAACAATACTTT+AGG - chr4.3:7057524-7057543 MS.gene000515:CDS 35.0%
AGGCATGTCAATAACAACAA+AGG - chr4.3:7053518-7053537 MS.gene000515:CDS 35.0%
AGGTAGAGAAGATAATTGGA+AGG - chr4.3:7053930-7053949 MS.gene000515:CDS 35.0%
ATGATGACATAATACTTGCC+TGG + chr4.3:7054480-7054499 None:intergenic 35.0%
ATGCTTCAAATCCTAGAAGA+TGG - chr4.3:7057331-7057350 MS.gene000515:intron 35.0%
ATGTAATCTCACTGGAAAGA+AGG + chr4.3:7056530-7056549 None:intergenic 35.0%
ATTGGTACTAATCGAGCTAA+GGG - chr4.3:7053692-7053711 MS.gene000515:CDS 35.0%
CATCTGTCATGAAGAAAACT+AGG + chr4.3:7054746-7054765 None:intergenic 35.0%
CATTGAAAAAGATCCAGCTT+TGG - chr4.3:7055713-7055732 MS.gene000515:intron 35.0%
CCACAACTCTAGATGAATAT+AGG - chr4.3:7055685-7055704 MS.gene000515:CDS 35.0%
CCTGGAAATTGCAAAATGTA+AGG + chr4.3:7054346-7054365 None:intergenic 35.0%
GAGCAAGTTAAACATGTTCA+AGG + chr4.3:7055105-7055124 None:intergenic 35.0%
GCACCTTAGAATGAAAATCT+TGG + chr4.3:7053664-7053683 None:intergenic 35.0%
GCACGTGTTCTTGAAAATTT+GGG - chr4.3:7054430-7054449 MS.gene000515:CDS 35.0%
GGAACTGAACAGATTCTATT+GGG - chr4.3:7053830-7053849 MS.gene000515:CDS 35.0%
GGTAGAGAAGATAATTGGAA+GGG - chr4.3:7053931-7053950 MS.gene000515:CDS 35.0%
GGTTGAGTATCCTAAAAATG+TGG + chr4.3:7056506-7056525 None:intergenic 35.0%
GTAGAGAAGATAATTGGAAG+GGG - chr4.3:7053932-7053951 MS.gene000515:CDS 35.0%
GTAGGTTATAACCCTAGATA+TGG - chr4.3:7055211-7055230 MS.gene000515:intron 35.0%
GTCAAAATCACAGGGAAAAT+TGG - chr4.3:7054819-7054838 MS.gene000515:intron 35.0%
GTTGAGGTAGAGAAGATAAT+TGG - chr4.3:7053926-7053945 MS.gene000515:CDS 35.0%
TAATCTTGTACTCCACTTGA+TGG - chr4.3:7054578-7054597 MS.gene000515:CDS 35.0%
TACAACATATTGTTGCCTCT+TGG - chr4.3:7056870-7056889 MS.gene000515:intron 35.0%
TACAAGTAGACCCATATCTA+GGG + chr4.3:7055225-7055244 None:intergenic 35.0%
TCAGTATAACCAACATATCC+TGG + chr4.3:7057217-7057236 None:intergenic 35.0%
TCCAGCCTATTCAGAAATTA+AGG + chr4.3:7056726-7056745 None:intergenic 35.0%
TGATGACATAATACTTGCCT+GGG + chr4.3:7054479-7054498 None:intergenic 35.0%
TGCTTCAAATCCTAGAAGAT+GGG - chr4.3:7057332-7057351 MS.gene000515:intron 35.0%
TGGAACTGAACAGATTCTAT+TGG - chr4.3:7053829-7053848 MS.gene000515:CDS 35.0%
TTAGAATGAAAATCTTGGCC+AGG + chr4.3:7053659-7053678 None:intergenic 35.0%
TTCAGATCCAAAGTAGTATG+AGG + chr4.3:7057122-7057141 None:intergenic 35.0%
TTCGTGATGTCAAAATCACA+GGG - chr4.3:7054811-7054830 MS.gene000515:intron 35.0%
TTGGATTCAATGTTTAGACC+TGG - chr4.3:7053638-7053657 MS.gene000515:CDS 35.0%
TTTCGTGATGTCAAAATCAC+AGG - chr4.3:7054810-7054829 MS.gene000515:intron 35.0%
! AGGATATGTTGGTTATACTG+AGG - chr4.3:7057216-7057235 MS.gene000515:intron 35.0%
! CAGATTCTATTGGGTCTTAT+TGG - chr4.3:7053839-7053858 MS.gene000515:CDS 35.0%
! CCTATATTCATCTAGAGTTG+TGG + chr4.3:7055688-7055707 None:intergenic 35.0%
! CCTTACATTTTGCAATTTCC+AGG - chr4.3:7054343-7054362 MS.gene000515:CDS 35.0%
! GCATTACCTTTTCAAACTCT+TGG + chr4.3:7056445-7056464 None:intergenic 35.0%
! GGATATGTTGGTTATACTGA+GGG - chr4.3:7057217-7057236 MS.gene000515:intron 35.0%
! TGATTTTATTCAGGGGGTAA+GGG - chr4.3:7055057-7055076 MS.gene000515:intron 35.0%
! TGGCCAAGATTTTCATTCTA+AGG - chr4.3:7053658-7053677 MS.gene000515:CDS 35.0%
! TTGATTTTATTCAGGGGGTA+AGG - chr4.3:7055056-7055075 MS.gene000515:intron 35.0%
!! AAAGTATTGTTTCAGCTCCT+CGG + chr4.3:7057524-7057543 None:intergenic 35.0%
!! CAAAGTAATTATGTTGGCTC+AGG - chr4.3:7053775-7053794 MS.gene000515:CDS 35.0%
!! CTAGTTTTCTTCATGACAGA+TGG - chr4.3:7054744-7054763 MS.gene000515:intron 35.0%
!! GATAGCGGATATAATGTTGA+AGG - chr4.3:7057615-7057634 MS.gene000515:CDS 35.0%
!!! CTAAGGTTTTGAAGTCTATG+GGG - chr4.3:7053882-7053901 MS.gene000515:CDS 35.0%
!!! GCTAAGGTTTTGAAGTCTAT+GGG - chr4.3:7053881-7053900 MS.gene000515:CDS 35.0%
AACCTACATCATGCAGAACA+AGG + chr4.3:7055198-7055217 None:intergenic 40.0%
AAGATAATTGGAAGGGGAAG+TGG - chr4.3:7053938-7053957 MS.gene000515:CDS 40.0%
AATAACCTGTTCCCATCAAG+TGG + chr4.3:7054593-7054612 None:intergenic 40.0%
ACTCACTAAACTGGAGGTTA+AGG - chr4.3:7057591-7057610 MS.gene000515:CDS 40.0%
AGATAGTAAGGGAAGAACTG+TGG - chr4.3:7057363-7057382 MS.gene000515:CDS 40.0%
AGATATGGGTCTACTTGTAG+CGG - chr4.3:7055226-7055245 MS.gene000515:intron 40.0%
AGCATCATGTTGAAGACATC+AGG + chr4.3:7057316-7057335 None:intergenic 40.0%
AGCGGATATAATGTTGAAGG+AGG - chr4.3:7057618-7057637 MS.gene000515:CDS 40.0%
ATACCTGTGCATGTTGAAGT+CGG + chr4.3:7056267-7056286 None:intergenic 40.0%
ATACTTGCAGTTACCTGAAG+AGG - chr4.3:7056358-7056377 MS.gene000515:intron 40.0%
ATAGACGAGAAAAGAACTGC+TGG + chr4.3:7056312-7056331 None:intergenic 40.0%
ATCTGATCGTCTTCTCAAGA+TGG - chr4.3:7056928-7056947 MS.gene000515:CDS 40.0%
CAAAGCCGCTATAGAACTTT+AGG + chr4.3:7056602-7056621 None:intergenic 40.0%
CAAGAGCCTCATCAGTATAA+CGG + chr4.3:7055839-7055858 None:intergenic 40.0%
CAATAAGATGCCAACTTTGG+AGG - chr4.3:7054672-7054691 MS.gene000515:intron 40.0%
CATGTTGAAGACATCAGGAT+GGG + chr4.3:7057311-7057330 None:intergenic 40.0%
CTACAAGTAGACCCATATCT+AGG + chr4.3:7055226-7055245 None:intergenic 40.0%
CTCAGTGACAGAGAGATTTA+GGG - chr4.3:7057675-7057694 MS.gene000515:CDS 40.0%
CTTCTTTCCCTCTATGGTTT+CGG + chr4.3:7054998-7055017 None:intergenic 40.0%
CTTGCTAGGGAGATTAAAGA+GGG - chr4.3:7057796-7057815 MS.gene000515:CDS 40.0%
GAAAAGATGAAGCTGGCAAT+TGG + chr4.3:7057055-7057074 None:intergenic 40.0%
GAAGAAAAGTAAGCCACGTA+AGG - chr4.3:7056563-7056582 MS.gene000515:intron 40.0%
GATCCGATATAATTGTGACC+TGG + chr4.3:7054364-7054383 None:intergenic 40.0%
GATGAAGTGCACACTCTAAT+TGG - chr4.3:7055335-7055354 MS.gene000515:intron 40.0%
GATTGGTACTAATCGAGCTA+AGG - chr4.3:7053691-7053710 MS.gene000515:CDS 40.0%
GGAAAATTGGATCCTGTTGT+GGG - chr4.3:7054832-7054851 MS.gene000515:intron 40.0%
GTATAACCAACATATCCTGG+AGG + chr4.3:7057214-7057233 None:intergenic 40.0%
GTCTCACATAGTGCTTGTAT+GGG - chr4.3:7056088-7056107 MS.gene000515:CDS 40.0%
TAATCTCACTGGAAAGAAGG+TGG + chr4.3:7056527-7056546 None:intergenic 40.0%
TAGGGTTCTTAAGTCCAACA+CGG + chr4.3:7057027-7057046 None:intergenic 40.0%
TATCCCTGTTGACAAAGTCT+CGG - chr4.3:7056898-7056917 MS.gene000515:intron 40.0%
TCAAGCCTATTCAAGAACTC+TGG + chr4.3:7057550-7057569 None:intergenic 40.0%
TCATGTTGAAGACATCAGGA+TGG + chr4.3:7057312-7057331 None:intergenic 40.0%
TCGCAACCAAGAGTTTGAAA+AGG - chr4.3:7056436-7056455 MS.gene000515:CDS 40.0%
TCTCAGTGACAGAGAGATTT+AGG - chr4.3:7057674-7057693 MS.gene000515:CDS 40.0%
TGACCTTGACTATGATGAGA+AGG - chr4.3:7057465-7057484 MS.gene000515:CDS 40.0%
TGAGTGACACGTTCAATTTG+TGG + chr4.3:7054865-7054884 None:intergenic 40.0%
TGTATGGTTTCAGGAACAGT+TGG + chr4.3:7055771-7055790 None:intergenic 40.0%
TGTCCTTCTCATCATAGTCA+AGG + chr4.3:7057471-7057490 None:intergenic 40.0%
TGTCTCACATAGTGCTTGTA+TGG - chr4.3:7056087-7056106 MS.gene000515:CDS 40.0%
TTAGGCCAGAGTTCTTGAAT+AGG - chr4.3:7057542-7057561 MS.gene000515:CDS 40.0%
TTCAAATCCTAGAAGATGGG+AGG - chr4.3:7057335-7057354 MS.gene000515:intron 40.0%
TTCTTTCCCTCTATGGTTTC+GGG + chr4.3:7054997-7055016 None:intergenic 40.0%
TTGGACTTAAGAACCCTAAC+AGG - chr4.3:7057029-7057048 MS.gene000515:intron 40.0%
TTTCAGGCAACTCACTAAAC+TGG - chr4.3:7057582-7057601 MS.gene000515:CDS 40.0%
! AGCCATGTTTGAGCGTTTTA+CGG - chr4.3:7053742-7053761 MS.gene000515:CDS 40.0%
! ATCAAAGAGTACAACCGTGT+AGG + chr4.3:7057275-7057294 None:intergenic 40.0%
! ATTGCCAGCTTCATCTTTTC+TGG - chr4.3:7057055-7057074 MS.gene000515:intron 40.0%
! GAACGTGTCACTCAAATCTT+GGG - chr4.3:7054871-7054890 MS.gene000515:intron 40.0%
! GATTTTATTCAGGGGGTAAG+GGG - chr4.3:7055058-7055077 MS.gene000515:intron 40.0%
! GGCGTGATTTATGTTTTGTC+CGG - chr4.3:7054233-7054252 MS.gene000515:CDS 40.0%
! TATGTTGGTTATACTGAGGG+TGG - chr4.3:7057220-7057239 MS.gene000515:intron 40.0%
! TCAAAGAGTACAACCGTGTA+GGG + chr4.3:7057274-7057293 None:intergenic 40.0%
! TGAACGTGTCACTCAAATCT+TGG - chr4.3:7054870-7054889 MS.gene000515:intron 40.0%
!! AAAAAGATCCAGCTTTGGAG+AGG - chr4.3:7055718-7055737 MS.gene000515:intron 40.0%
!! AGAAAAGAACTGCTGGTTCA+GGG + chr4.3:7056305-7056324 None:intergenic 40.0%
!! AGTAATTATGTTGGCTCAGG+AGG - chr4.3:7053778-7053797 MS.gene000515:CDS 40.0%
!! ATAGTGGATGCTGATTCTGA+TGG - chr4.3:7057829-7057848 MS.gene000515:CDS 40.0%
!! CTATTGGGTCTTATTGGTGA+AGG - chr4.3:7053845-7053864 MS.gene000515:CDS 40.0%
!! CTTTTGGGTCTTCTTAGAGA+GGG - chr4.3:7054394-7054413 MS.gene000515:CDS 40.0%
!!! GGCTAAGGTTTTGAAGTCTA+TGG - chr4.3:7053880-7053899 MS.gene000515:CDS 40.0%
AAGCAGTAGAAGCCATTAGC+AGG - chr4.3:7056987-7057006 MS.gene000515:CDS 45.0%
AAGGAGCAGCTAGATCAAGA+AGG - chr4.3:7053537-7053556 MS.gene000515:CDS 45.0%
AATTGGATCCTGTTGTGGGT+AGG - chr4.3:7054836-7054855 MS.gene000515:intron 45.0%
ACCAACCTTCTTTCCCTCTA+TGG + chr4.3:7055004-7055023 None:intergenic 45.0%
ACCATAGAGGGAAAGAAGGT+TGG - chr4.3:7055000-7055019 MS.gene000515:intron 45.0%
ACCCAGACTGTCTAGTTACT+CGG - chr4.3:7053595-7053614 MS.gene000515:CDS 45.0%
ACTGGAGGTTAAGGAGATAG+CGG - chr4.3:7057600-7057619 MS.gene000515:CDS 45.0%
AGAGAGATTTAGGGAGAGAG+TGG - chr4.3:7057684-7057703 MS.gene000515:CDS 45.0%
AGAGGCAAGAGGTCTTGAAA+AGG - chr4.3:7056376-7056395 MS.gene000515:CDS 45.0%
AGCAGTAGAAGCCATTAGCA+GGG - chr4.3:7056988-7057007 MS.gene000515:CDS 45.0%
AGGGTTCTTAAGTCCAACAC+GGG + chr4.3:7057026-7057045 None:intergenic 45.0%
AGTCTTGGAACTCTCATTGG+AGG - chr4.3:7054003-7054022 MS.gene000515:CDS 45.0%
ATAATCCTAGTTATGGGGCC+AGG - chr4.3:7057719-7057738 MS.gene000515:CDS 45.0%
ATGGGAACAGGTTATTCGCA+TGG - chr4.3:7054597-7054616 MS.gene000515:CDS 45.0%
ATTGTGCTCAACGGTAGTAC+TGG - chr4.3:7057859-7057878 MS.gene000515:CDS 45.0%
CAACCGAGACTTTGTCAACA+GGG + chr4.3:7056904-7056923 None:intergenic 45.0%
CAAGCTCCGTTATACTGATG+AGG - chr4.3:7055830-7055849 MS.gene000515:intron 45.0%
CAATTTGACCAAGCTAGCAG+AGG - chr4.3:7054705-7054724 MS.gene000515:intron 45.0%
CACACAGTCTCCAAACTCAT+TGG - chr4.3:7057184-7057203 MS.gene000515:intron 45.0%
CACTGAGAGCTCAATCTCTT+TGG + chr4.3:7057662-7057681 None:intergenic 45.0%
CATATTGTTGCCTCTTGGAC+TGG - chr4.3:7056875-7056894 MS.gene000515:intron 45.0%
CCTAAAAGATGCACGTGTTG+AGG - chr4.3:7053910-7053929 MS.gene000515:CDS 45.0%
CGAAACCATAGAGGGAAAGA+AGG - chr4.3:7054996-7055015 MS.gene000515:intron 45.0%
CTCCGTAAAACGCTCAAACA+TGG + chr4.3:7053747-7053766 None:intergenic 45.0%
GAACAGGTTATTCGCATGGT+TGG - chr4.3:7054601-7054620 MS.gene000515:CDS 45.0%
GAGAGTCTTGGAACTCTCAT+TGG - chr4.3:7054000-7054019 MS.gene000515:CDS 45.0%
GAGGTCTTGAAAAGGAGGTT+AGG - chr4.3:7056384-7056403 MS.gene000515:CDS 45.0%
GATATGGGTCTACTTGTAGC+GGG - chr4.3:7055227-7055246 MS.gene000515:intron 45.0%
GATTAATGTCCCTGGTCTAG+TGG - chr4.3:7053487-7053506 MS.gene000515:CDS 45.0%
GGAAACGTGATTGTGCTCAA+CGG - chr4.3:7057850-7057869 MS.gene000515:CDS 45.0%
GGAGGTTAGGCAGATAGTAA+AGG - chr4.3:7056397-7056416 MS.gene000515:CDS 45.0%
GGGAAAATTGGATCCTGTTG+TGG - chr4.3:7054831-7054850 MS.gene000515:intron 45.0%
GGGAGGCTAACAGATAGTAA+GGG - chr4.3:7057352-7057371 MS.gene000515:CDS 45.0%
GTCCTCCAAAAGTCGCATTA+TGG + chr4.3:7057758-7057777 None:intergenic 45.0%
GTCTGAATTGGCTAAGGCAT+TGG - chr4.3:7057096-7057115 MS.gene000515:intron 45.0%
GTTACTACTTCCAGAGCCAA+CGG + chr4.3:7054653-7054672 None:intergenic 45.0%
TCAACCGAGACTTTGTCAAC+AGG + chr4.3:7056905-7056924 None:intergenic 45.0%
TCCAACTAATATTCGCACCC+AGG - chr4.3:7054459-7054478 MS.gene000515:CDS 45.0%
TCTTGCTAGAGGTGAACTAC+AGG - chr4.3:7055409-7055428 MS.gene000515:intron 45.0%
TCTTTCCCTCTATGGTTTCG+GGG + chr4.3:7054996-7055015 None:intergenic 45.0%
TGAATAGGCTGGAGAGCTAA+GGG - chr4.3:7056733-7056752 MS.gene000515:CDS 45.0%
TGAGAGTTCCAAGACTCTCT+TGG + chr4.3:7053999-7054018 None:intergenic 45.0%
TGGAGGTGAACCAATGAGTT+TGG + chr4.3:7057197-7057216 None:intergenic 45.0%
TGGCTGAAAAGATGCTTGCT+AGG - chr4.3:7057782-7057801 MS.gene000515:CDS 45.0%
TGGGAGGCTAACAGATAGTA+AGG - chr4.3:7057351-7057370 MS.gene000515:CDS 45.0%
TGGTGAAGGAACTGGTATTG+CGG - chr4.3:7053859-7053878 MS.gene000515:CDS 45.0%
TTGAAACCAGCTCTTGCTAG+AGG - chr4.3:7055398-7055417 MS.gene000515:intron 45.0%
TTGAGCAAGACCTTCAGCAA+TGG + chr4.3:7054953-7054972 None:intergenic 45.0%
TTGCTGAAGGTCTTGCTCAA+CGG - chr4.3:7054953-7054972 MS.gene000515:CDS 45.0%
! ACAAGGCATTCACGTCATTC+AGG + chr4.3:7055181-7055200 None:intergenic 45.0%
! ACGAGCCATAATGCGACTTT+TGG - chr4.3:7057750-7057769 MS.gene000515:CDS 45.0%
! AGAGCATCTGGCAATGAATC+TGG + chr4.3:7057889-7057908 None:intergenic 45.0%
! AGCCATAATGCGACTTTTGG+AGG - chr4.3:7057753-7057772 MS.gene000515:CDS 45.0%
! ATGCCAACTTTGGAGGAGTA+TGG - chr4.3:7054679-7054698 MS.gene000515:intron 45.0%
! CATCAGTATAACGGAGCTTG+TGG + chr4.3:7055830-7055849 None:intergenic 45.0%
! CCTCAACACGTGCATCTTTT+AGG + chr4.3:7053913-7053932 None:intergenic 45.0%
! CTCTGCTAGCTTGGTCAAAT+TGG + chr4.3:7054707-7054726 None:intergenic 45.0%
! GCATTGGCCTCATACTACTT+TGG - chr4.3:7057112-7057131 MS.gene000515:intron 45.0%
! GCTTGCTAGGGAGATTAAAG+AGG - chr4.3:7057795-7057814 MS.gene000515:CDS 45.0%
! GGCTGAAAAGATGCTTGCTA+GGG - chr4.3:7057783-7057802 MS.gene000515:CDS 45.0%
! TCTAAGGTGCTCACTCAGAT+TGG - chr4.3:7053674-7053693 MS.gene000515:CDS 45.0%
! TGCCTTGTTCTGCATGATGT+AGG - chr4.3:7055193-7055212 MS.gene000515:intron 45.0%
!! AAACTCATTGGTTCACCTCC+AGG - chr4.3:7057196-7057215 MS.gene000515:intron 45.0%
!! CTTGCTCAACGGATTGCAAA+TGG - chr4.3:7054964-7054983 MS.gene000515:CDS 45.0%
!! GAGAAAAGAACTGCTGGTTC+AGG + chr4.3:7056306-7056325 None:intergenic 45.0%
!! GCTTTTGGGTCTTCTTAGAG+AGG - chr4.3:7054393-7054412 MS.gene000515:CDS 45.0%
!! GGATCTGAGCACTTGCTTTT+GGG - chr4.3:7054379-7054398 MS.gene000515:CDS 45.0%
!! GGTCTTATTGGTGAAGGAAC+TGG - chr4.3:7053851-7053870 MS.gene000515:CDS 45.0%
!! GTTATTCGCATGGTTGGTGA+GGG - chr4.3:7054607-7054626 MS.gene000515:CDS 45.0%
!! TTCATCTTTTCTGGCCCTAC+TGG - chr4.3:7057064-7057083 MS.gene000515:intron 45.0%
!! ATATAATAAAAATACATAAA+AGG + chr4.3:7054508-7054527 None:intergenic 5.0%
AACAGGGATACCAGTCCAAG+AGG + chr4.3:7056888-7056907 None:intergenic 50.0%
AATCGAGCTAAGGGTGGTAG+AGG - chr4.3:7053701-7053720 MS.gene000515:CDS 50.0%
AGAGGGCGACTCTGTTATAG+TGG - chr4.3:7057813-7057832 MS.gene000515:CDS 50.0%
AGCAGTGTGATCGAGAAAGG+AGG - chr4.3:7057427-7057446 MS.gene000515:CDS 50.0%
AGCTGAAGGGGCAATTGATG+CGG - chr4.3:7055367-7055386 MS.gene000515:intron 50.0%
AGGAACTGGTATTGCGGCTA+AGG - chr4.3:7053865-7053884 MS.gene000515:CDS 50.0%
AGGGCCAGAAAAGATGAAGC+TGG + chr4.3:7057062-7057081 None:intergenic 50.0%
AGTCCGACTTCAACATGCAC+AGG - chr4.3:7056261-7056280 MS.gene000515:intron 50.0%
AGTTACCTCCTCTGCTAGCT+TGG + chr4.3:7054716-7054735 None:intergenic 50.0%
AGTTCACCTCTAGCAAGAGC+TGG + chr4.3:7055407-7055426 None:intergenic 50.0%
CAGGCAACTCACTAAACTGG+AGG - chr4.3:7057585-7057604 MS.gene000515:CDS 50.0%
CAGTTACCTGAAGAGGCAAG+AGG - chr4.3:7056365-7056384 MS.gene000515:CDS 50.0%
CCAGGTTCCCCAATAAGACA+AGG + chr4.3:7054916-7054935 None:intergenic 50.0%
CCCAGACTGTCTAGTTACTC+GGG - chr4.3:7053596-7053615 MS.gene000515:CDS 50.0%
CCCGAGTAACTAGACAGTCT+GGG + chr4.3:7053599-7053618 None:intergenic 50.0%
CGCATTATGGCTCGTCTTAG+AGG + chr4.3:7057745-7057764 None:intergenic 50.0%
CTGAATAGGCTGGAGAGCTA+AGG - chr4.3:7056732-7056751 MS.gene000515:CDS 50.0%
CTTATTGGGGAACCTGGTGT+CGG - chr4.3:7054919-7054938 MS.gene000515:intron 50.0%
GATGAACAAGGCAGAGAGTG+AGG - chr4.3:7056811-7056830 MS.gene000515:intron 50.0%
GATGTCCCCGAAACCATAGA+GGG - chr4.3:7054988-7055007 MS.gene000515:CDS 50.0%
GCCTGGGTGCGAATATTAGT+TGG + chr4.3:7054463-7054482 None:intergenic 50.0%
GCTCTGGCACTTTAACAGGT+TGG + chr4.3:7055749-7055768 None:intergenic 50.0%
GGAAAGACAGCCATTGCTGA+AGG - chr4.3:7054940-7054959 MS.gene000515:CDS 50.0%
GGAAGCAGTGTGATCGAGAA+AGG - chr4.3:7057424-7057443 MS.gene000515:CDS 50.0%
GGCAAGAGGTCTTGAAAAGG+AGG - chr4.3:7056379-7056398 MS.gene000515:CDS 50.0%
GGGGAAGTCTGAATTGGCTA+AGG - chr4.3:7057090-7057109 MS.gene000515:intron 50.0%
GGTACTAATCGAGCTAAGGG+TGG - chr4.3:7053695-7053714 MS.gene000515:CDS 50.0%
GGTCTTCTTAGAGAGGGTGA+AGG - chr4.3:7054400-7054419 MS.gene000515:CDS 50.0%
GGTTCACCTCCAGGATATGT+TGG - chr4.3:7057205-7057224 MS.gene000515:intron 50.0%
GTACTCCACTTGATGGGAAC+AGG - chr4.3:7054585-7054604 MS.gene000515:CDS 50.0%
GTCAACTGACTGAGGCAGTT+CGG - chr4.3:7057242-7057261 MS.gene000515:intron 50.0%
GTGCACACTCTAATTGGAGC+AGG - chr4.3:7055341-7055360 MS.gene000515:intron 50.0%
GTGCATGTTGAAGTCGGACT+CGG + chr4.3:7056261-7056280 None:intergenic 50.0%
GTGCCATACTCCTCCAAAGT+TGG + chr4.3:7054685-7054704 None:intergenic 50.0%
TCAAGACCTCTTGCCTCTTC+AGG + chr4.3:7056374-7056393 None:intergenic 50.0%
TCCCGAGTAACTAGACAGTC+TGG + chr4.3:7053600-7053619 None:intergenic 50.0%
TCTTAGAGAGGGTGAAGGTG+TGG - chr4.3:7054405-7054424 MS.gene000515:CDS 50.0%
TGATGTCCCCGAAACCATAG+AGG - chr4.3:7054987-7055006 MS.gene000515:CDS 50.0%
TGCATGTTGAAGTCGGACTC+GGG + chr4.3:7056260-7056279 None:intergenic 50.0%
TGGTGTGGGGAAGTCTGAAT+TGG - chr4.3:7057084-7057103 MS.gene000515:intron 50.0%
TTGGAGGAAGCTCGTCAACT+TGG - chr4.3:7054019-7054038 MS.gene000515:CDS 50.0%
TTTGACCAAGCTAGCAGAGG+AGG - chr4.3:7054708-7054727 MS.gene000515:intron 50.0%
! AAGCTGGCAATTGGCCTGTT+AGG + chr4.3:7057046-7057065 None:intergenic 50.0%
! AATCAAGAGCTTGGTGACCG+AGG - chr4.3:7057504-7057523 MS.gene000515:CDS 50.0%
! AGCTGGCAATTGGCCTGTTA+GGG + chr4.3:7057045-7057064 None:intergenic 50.0%
! CCTTGTCTTATTGGGGAACC+TGG - chr4.3:7054913-7054932 MS.gene000515:intron 50.0%
! CGGATCTGAGCACTTGCTTT+TGG - chr4.3:7054378-7054397 MS.gene000515:CDS 50.0%
! CGGCTGGGACACAATTTTGT+TGG - chr4.3:7053809-7053828 MS.gene000515:CDS 50.0%
! CTGTTAGCCTCCCATCTTCT+AGG + chr4.3:7057345-7057364 None:intergenic 50.0%
! GGTTATTCGCATGGTTGGTG+AGG - chr4.3:7054606-7054625 MS.gene000515:CDS 50.0%
! GTAGCGGGAACTAAATACCG+TGG - chr4.3:7055242-7055261 MS.gene000515:intron 50.0%
! GTTTCAGGAACAGTTGGCTC+TGG + chr4.3:7055765-7055784 None:intergenic 50.0%
!! AGAACTGCTGGTTCAGGGAA+TGG + chr4.3:7056300-7056319 None:intergenic 50.0%
!! GTGAGGGTGCTGATAGTGTT+GGG - chr4.3:7054623-7054642 MS.gene000515:CDS 50.0%
!! GTTGGCTCTGGCACTTTAAC+AGG + chr4.3:7055753-7055772 None:intergenic 50.0%
!! TGAGGGTGCTGATAGTGTTG+GGG - chr4.3:7054624-7054643 MS.gene000515:intron 50.0%
!! TTTTCTGGCCCTACTGGTGT+GGG - chr4.3:7057070-7057089 MS.gene000515:intron 50.0%
AACAAGGCAGAGAGTGAGGC+AGG - chr4.3:7056815-7056834 MS.gene000515:intron 55.0%
AATGTCCCTGGTCTAGTGGC+TGG - chr4.3:7053491-7053510 MS.gene000515:CDS 55.0%
ATGGCTGTCTTTCCGACACC+AGG + chr4.3:7054934-7054953 None:intergenic 55.0%
ATTGGAGCAGGAGCAGCTGA+AGG - chr4.3:7055353-7055372 MS.gene000515:intron 55.0%
CAAGACTCTCTTGGCACGTG+GGG + chr4.3:7053990-7054009 None:intergenic 55.0%
CAGACTTCCCCACACCAGTA+GGG + chr4.3:7057081-7057100 None:intergenic 55.0%
CCAAGACTCTCTTGGCACGT+GGG + chr4.3:7053991-7054010 None:intergenic 55.0%
CTCTTGGCACGTGGGGTAAA+CGG + chr4.3:7053983-7054002 None:intergenic 55.0%
GAGAGTGAGGCAGGAGATGT+AGG - chr4.3:7056824-7056843 MS.gene000515:intron 55.0%
GCGCAGTCGATTAATGTCCC+TGG - chr4.3:7053479-7053498 MS.gene000515:CDS 55.0%
TAAGTCCAACACGGGCTCGA+CGG + chr4.3:7057018-7057037 None:intergenic 55.0%
TATGGCTCGTCTTAGAGGCC+TGG + chr4.3:7057740-7057759 None:intergenic 55.0%
TCAGACTTCCCCACACCAGT+AGG + chr4.3:7057082-7057101 None:intergenic 55.0%
TCCAAGACTCTCTTGGCACG+TGG + chr4.3:7053992-7054011 None:intergenic 55.0%
TCGACGGATAGCCCTGCTAA+TGG + chr4.3:7057002-7057021 None:intergenic 55.0%
TGAGGGTGGTCAACTGACTG+AGG - chr4.3:7057234-7057253 MS.gene000515:intron 55.0%
TGGAATCGCCTCTCCAAAGC+TGG + chr4.3:7055729-7055748 None:intergenic 55.0%
TTCGACCAGCCACTAGACCA+GGG + chr4.3:7053499-7053518 None:intergenic 55.0%
TTGGAGCAGGAGCAGCTGAA+GGG - chr4.3:7055354-7055373 MS.gene000515:intron 55.0%
! GATAGTGTTGGGGCTACCGT+TGG - chr4.3:7054634-7054653 MS.gene000515:intron 55.0%
! TTTCTGGCCCTACTGGTGTG+GGG - chr4.3:7057071-7057090 MS.gene000515:intron 55.0%
!! ACTGCTGGTTCAGGGAATGG+TGG + chr4.3:7056297-7056316 None:intergenic 55.0%
!! CTTTTCTGGCCCTACTGGTG+TGG - chr4.3:7057069-7057088 MS.gene000515:intron 55.0%
!! GCGACTTTTGGAGGACAGCA+TGG - chr4.3:7057762-7057781 MS.gene000515:CDS 55.0%
!! GGTGAGGGTGCTGATAGTGT+TGG - chr4.3:7054622-7054641 MS.gene000515:CDS 55.0%
!! TGTTGGCTCAGGAGGAAGCA+AGG - chr4.3:7053786-7053805 MS.gene000515:CDS 55.0%
AGAGGCCTGGCCCCATAACT+AGG + chr4.3:7057727-7057746 None:intergenic 60.0%
AGGGAGAGAGTGGTCGACGA+AGG - chr4.3:7057694-7057713 MS.gene000515:CDS 60.0%
AGTTCGGCGTCGTCCCTACA+CGG - chr4.3:7057258-7057277 MS.gene000515:intron 60.0%
CCCACGTGCCAAGAGAGTCT+TGG - chr4.3:7053988-7054007 MS.gene000515:CDS 60.0%
CTTCGACCAGCCACTAGACC+AGG + chr4.3:7053500-7053519 None:intergenic 60.0%
GAGAAAGGAGGCCGTCGCAT+AGG - chr4.3:7057439-7057458 MS.gene000515:CDS 60.0%
TCTGGGTGCAGCAGTTCGTG+TGG + chr4.3:7053582-7053601 None:intergenic 60.0%
TGGAGCAGGAGCAGCTGAAG+GGG - chr4.3:7055355-7055374 MS.gene000515:intron 60.0%
TGGCTCAGGAGGAAGCAAGG+CGG - chr4.3:7053789-7053808 MS.gene000515:CDS 60.0%
TGTGGCTGCCTACCCACAAC+AGG + chr4.3:7054847-7054866 None:intergenic 60.0%
! CTGGTCTAGTGGCTGGTCGA+AGG - chr4.3:7053498-7053517 MS.gene000515:CDS 60.0%
CAGGAGGAAGCAAGGCGGCT+GGG - chr4.3:7053794-7053813 MS.gene000515:CDS 65.0%
GCTATCCGTCGAGCCCGTGT+TGG - chr4.3:7057010-7057029 MS.gene000515:intron 65.0%
TCAGGAGGAAGCAAGGCGGC+TGG - chr4.3:7053793-7053812 MS.gene000515:CDS 65.0%
!! GTTGGGGCTACCGTTGGCTC+TGG - chr4.3:7054640-7054659 MS.gene000515:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 7053464 7057918 7053464 ID=MS.gene000515
chr4.3 mRNA 7053464 7057918 7053464 ID=MS.gene000515.t1;Parent=MS.gene000515
chr4.3 exon 7057342 7057918 7057342 ID=MS.gene000515.t1.exon1;Parent=MS.gene000515.t1
chr4.3 CDS 7057342 7057918 7057342 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
chr4.3 exon 7056902 7057017 7056902 ID=MS.gene000515.t1.exon2;Parent=MS.gene000515.t1
chr4.3 CDS 7056902 7057017 7056902 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
chr4.3 exon 7056653 7056775 7056653 ID=MS.gene000515.t1.exon3;Parent=MS.gene000515.t1
chr4.3 CDS 7056653 7056775 7056653 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
chr4.3 exon 7056365 7056550 7056365 ID=MS.gene000515.t1.exon4;Parent=MS.gene000515.t1
chr4.3 CDS 7056365 7056550 7056365 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
chr4.3 exon 7055952 7056167 7055952 ID=MS.gene000515.t1.exon5;Parent=MS.gene000515.t1
chr4.3 CDS 7055952 7056167 7055952 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
chr4.3 exon 7055490 7055707 7055490 ID=MS.gene000515.t1.exon6;Parent=MS.gene000515.t1
chr4.3 CDS 7055490 7055707 7055490 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
chr4.3 exon 7055100 7055175 7055100 ID=MS.gene000515.t1.exon7;Parent=MS.gene000515.t1
chr4.3 CDS 7055100 7055175 7055100 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
chr4.3 exon 7054925 7055014 7054925 ID=MS.gene000515.t1.exon8;Parent=MS.gene000515.t1
chr4.3 CDS 7054925 7055014 7054925 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
chr4.3 exon 7053464 7054642 7053464 ID=MS.gene000515.t1.exon9;Parent=MS.gene000515.t1
chr4.3 CDS 7053464 7054642 7053464 ID=cds.MS.gene000515.t1;Parent=MS.gene000515.t1
Gene Sequence

>MS.gene000515

ATGTCGAGGGTTTTGGCGCAGTCGATTAATGTCCCTGGTCTAGTGGCTGGTCGAAGGCATGTCAATAACAACAAAGGAGCAGCTAGATCAAGAAGGTCTGTCAGAATGATGTTTACCACACGAACTGCTGCACCCAGACTGTCTAGTTACTCGGGATTACGTACTTTGAATTCTTTGGATTCAATGTTTAGACCTGGCCAAGATTTTCATTCTAAGGTGCTCACTCAGATTGGTACTAATCGAGCTAAGGGTGGTAGAGGTAGCAGATGTGTCACTAAAGCCATGTTTGAGCGTTTTACGGAGAAAGCTATCAAAGTAATTATGTTGGCTCAGGAGGAAGCAAGGCGGCTGGGACACAATTTTGTTGGAACTGAACAGATTCTATTGGGTCTTATTGGTGAAGGAACTGGTATTGCGGCTAAGGTTTTGAAGTCTATGGGGATTAACCTAAAAGATGCACGTGTTGAGGTAGAGAAGATAATTGGAAGGGGAAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACCCCACGTGCCAAGAGAGTCTTGGAACTCTCATTGGAGGAAGCTCGTCAACTTGGTAAACGATAGCATACTTTTATAATGTCGTTTTGCATATCTAATCAATTACTTTGTTTACAAAAAATGTGTTCACGACTTATTATTTGTATGATATATTCCAAACATGACTTGATTTTTGCTTTGAGTGATTTGTTGGTTGACTAATTTGAATTATTTTCATTCAAAGTGAGTTGAAATTTATCCATGAATTGGCGTGATTTATGTTTTGTCCGGCCTTTCTGTTCTTTTGTTTATTTTATTTGGAGTGTTTAAAAATTAGTATTCACGTGCAATACTTTGCTTGTGCTTGCTGAAAGTTTGCCTTACATTTTGCAATTTCCAGGTCACAATTATATCGGATCTGAGCACTTGCTTTTGGGTCTTCTTAGAGAGGGTGAAGGTGTGGCAGCACGTGTTCTTGAAAATTTGGGTGCTGATCCAACTAATATTCGCACCCAGGCAAGTATTATGTCATCATTTATTCCTTTTATGTATTTTTATTATATAAGAACATGTTTTCATTTCACTTTTTATCTGAATTTATGTTTTTGTGTGTTAATCTTGTACTCCACTTGATGGGAACAGGTTATTCGCATGGTTGGTGAGGGTGCTGATAGTGTTGGGGCTACCGTTGGCTCTGGAAGTAGTAACAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGTAACTTACAATTCCTAGTTTTCTTCATGACAGATGGTAGATAATGTCTCAGTCTGTGTTGATGCTTACCAATTTTTCTCTTTCGTGATGTCAAAATCACAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATCTTGGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGGGAACCTGGTGTCGGAAAGACAGCCATTGCTGAAGGTCTTGCTCAACGGATTGCAAATGGTGATGTCCCCGAAACCATAGAGGGAAAGAAGGTTGGTGTTTGTTTCTATCTCTAGCCCATAAATTGTTTTTGATTTTATTCAGGGGGTAAGGGGTTTGCTCTTTCATTTTCAGCACCTTGAACATGTTTAACTTGCTCAATCTTGATCTGATTATAATTCTTAGATGTGGAATTTTAGTACTTTCGGGTGTCCTGAATGACGTGAATGCCTTGTTCTGCATGATGTAGGTTATAACCCTAGATATGGGTCTACTTGTAGCGGGAACTAAATACCGTGGAGAATTTGAAGAAAGATTGAAAAAACTAATGGAGGAAATCAAACAAAGTGATGAAATAATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCGGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGGTAATGTTTTCTTTTGACATCTCAAAAATGGATACGTTGCACTTTTGACTTGCAGATCAATGAAAATATGTATGCAGAAGTTTCAATAATAAGCTTTTGAATACTTCTATCTATAAAAAAGTGTACACATTTTCACAGTTCATTTTTAATCAATAGTATTAAAAAATTTAAATTCTTAATGATCACTTTGGATTGTCTATGAAATGTAAAGACTGAAGGCATAATTAAAATACTTATGTTGCAGTGTATAGGAGCCACAACTCTAGATGAATATAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGCGATTCCAACCTGTTAAAGTGCCAGAGCCAACTGTTCCTGAAACCATACAAATACTGAAAGGACTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACTGATGAGGCTCTTGTAGCTGCTGCAGAGCTGTCACATCAATATATTAGGTTTGTCATAATTTATATTTATGCACATTCTCTGCACGTTTTCAATTTTAATTTATGATGTAGAAAAGAATTTTTTTTTATAGTTCTGGTATTACATGTTTAAATGGGAATTTATAAACCGAAGTTAATCATCTGGAATTTAGTATTATGCCTTTGAATTGTTTTACAACATTATTTTGGAACTCTCACGTAGTTGTCTCACATAGTGCTTGTATGGGAATGAATCAAACTGCACCTTCTTCTATCTTGTTATCTTCTACTTGCTGTTTATCTCAAGTGTTTTCTCGCTCATAAAATAATTATGATTTTTGCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGACTTCAACATGCACAGGTATTGTTCATCCACCATTCCCTGAACCAGCAGTTCTTTTCTCGTCTATTATTGAGCTAATTGTGTCAGATTTACATACTTGCAGTTACCTGAAGAGGCAAGAGGTCTTGAAAAGGAGGTTAGGCAGATAGTAAAGGAGAAAGATGAAGCTGTTCGCAACCAAGAGTTTGAAAAGGTAATGCTTTAATTTAAAACTTAACTTGTAAACTTTAACATAACCCCACATTTTTAGGATACTCAACCACCTTCTTTCCAGTGAGATTACATTATATTTTTCAAAGAAGAAAAGTAAGCCACGTAAGGCTGTTTTATCTTTCCTAAAGTTCTATAGCGGCTTTGTTCTCTAGTTTTTGTTTGAAGACATTGTAGTGGTTTGTTCCTTCAATTATATATATCCAAATTCCTTTACATTCTGGCTAATAAATAGTGGGCTGATGATACCTTAATTTCTGAATAGGCTGGAGAGCTAAGGGATAAAGAAATGGATCTCAAGACTCAGATATCAGCACTTATAGAAAAAAACAAGGAGATGAACAAGGCAGAGAGTGAGGCAGGAGATGTAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTTGCCTCTTGGACTGGTATCCCTGTTGACAAAGTCTCGGTTGACGAATCTGATCGTCTTCTCAAGATGGAAGACACATTACACAAACGCATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCAGGGCTATCCGTCGAGCCCGTGTTGGACTTAAGAACCCTAACAGGCCAATTGCCAGCTTCATCTTTTCTGGCCCTACTGGTGTGGGGAAGTCTGAATTGGCTAAGGCATTGGCCTCATACTACTTTGGATCTGAAGAAGCCATGATTCGTCTTGATATGAGTGAATTCATGGAAAGGCACACAGTCTCCAAACTCATTGGTTCACCTCCAGGATATGTTGGTTATACTGAGGGTGGTCAACTGACTGAGGCAGTTCGGCGTCGTCCCTACACGGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTCTTCAACATGATGCTTCAAATCCTAGAAGATGGGAGGCTAACAGATAGTAAGGGAAGAACTGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATCGAGAAAGGAGGCCGTCGCATAGGATTTGACCTTGACTATGATGAGAAGGACAGCAGTTATAACAGAATCAAGAGCTTGGTGACCGAGGAGCTGAAACAATACTTTAGGCCAGAGTTCTTGAATAGGCTTGATGAAATGATTGTTTTCAGGCAACTCACTAAACTGGAGGTTAAGGAGATAGCGGATATAATGTTGAAGGAGGTGTTTGAGAGACTGAAAACCAAAGAGATTGAGCTCTCAGTGACAGAGAGATTTAGGGAGAGAGTGGTCGACGAAGGTTATAATCCTAGTTATGGGGCCAGGCCTCTAAGACGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAAAAGATGCTTGCTAGGGAGATTAAAGAGGGCGACTCTGTTATAGTGGATGCTGATTCTGATGGAAACGTGATTGTGCTCAACGGTAGTACTGGTGCTCCAGATTCATTGCCAGATGCTCTTCCTGTGTAA
Protein sequence

>MS.gene000515.t1

MSRVLAQSINVPGLVAGRRHVNNNKGAARSRRSVRMMFTTRTAAPRLSSYSGLRTLNSLDSMFRPGQDFHSKVLTQIGTNRAKGGRGSRCVTKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGEGADSVGATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVPETIQILKGLRERYEIHHKLRYTDEALVAAAELSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIVKEKDEAVRNQEFEKAGELRDKEMDLKTQISALIEKNKEMNKAESEAGDVGALVTEVDIQHIVASWTGIPVDKVSVDESDRLLKMEDTLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSTGAPDSLPDALPV