Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012897.t1 | RHN70355.1 | 99.6 | 927 | 4 | 0 | 1 | 927 | 1 | 927 | 0.00E+00 | 1770.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012897.t1 | P35100 | 89.8 | 927 | 90 | 3 | 1 | 927 | 1 | 922 | 0.0e+00 | 1588.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012897.t1 | A0A396J1U1 | 99.6 | 927 | 4 | 0 | 1 | 927 | 1 | 927 | 0.0e+00 | 1770.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012897 | MS.gene014362 | PPI |
| MS.gene013215 | MS.gene012897 | PPI |
| MS.gene54210 | MS.gene012897 | PPI |
| MS.gene012897 | MS.gene45242 | PPI |
| MS.gene014895 | MS.gene012897 | PPI |
| MS.gene033069 | MS.gene012897 | PPI |
| MS.gene52786 | MS.gene012897 | PPI |
| MS.gene97588 | MS.gene012897 | PPI |
| MS.gene012897 | MS.gene071279 | PPI |
| MS.gene015346 | MS.gene012897 | PPI |
| MS.gene06302 | MS.gene012897 | PPI |
| MS.gene064818 | MS.gene012897 | PPI |
| MS.gene32689 | MS.gene012897 | PPI |
| MS.gene61239 | MS.gene012897 | PPI |
| MS.gene012897 | MS.gene021811 | PPI |
| MS.gene063483 | MS.gene012897 | PPI |
| MS.gene012897 | MS.gene09688 | PPI |
| MS.gene012897 | MS.gene86083 | PPI |
| MS.gene057532 | MS.gene012897 | PPI |
| MS.gene011621 | MS.gene012897 | PPI |
| MS.gene012897 | MS.gene044439 | PPI |
| MS.gene014894 | MS.gene012897 | PPI |
| MS.gene42656 | MS.gene012897 | PPI |
| MS.gene049185 | MS.gene012897 | PPI |
| MS.gene031135 | MS.gene012897 | PPI |
| MS.gene21502 | MS.gene012897 | PPI |
| MS.gene42657 | MS.gene012897 | PPI |
| MS.gene69343 | MS.gene012897 | PPI |
| MS.gene41623 | MS.gene012897 | PPI |
| MS.gene46376 | MS.gene012897 | PPI |
| MS.gene80200 | MS.gene012897 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012897.t1 | MTR_3g102830 | 99.461 | 927 | 5 | 0 | 1 | 927 | 1 | 927 | 0.0 | 1867 |
| MS.gene012897.t1 | MTR_8g100040 | 96.224 | 927 | 34 | 1 | 1 | 927 | 1 | 926 | 0.0 | 1778 |
| MS.gene012897.t1 | MTR_3g498725 | 90.076 | 927 | 87 | 3 | 1 | 927 | 1 | 922 | 0.0 | 1654 |
| MS.gene012897.t1 | MTR_3g461000 | 51.758 | 825 | 323 | 9 | 96 | 912 | 1 | 758 | 0.0 | 825 |
| MS.gene012897.t1 | MTR_3g098310 | 46.234 | 863 | 409 | 13 | 96 | 912 | 100 | 953 | 0.0 | 748 |
| MS.gene012897.t1 | MTR_6g013660 | 43.617 | 940 | 423 | 18 | 42 | 903 | 26 | 936 | 0.0 | 723 |
| MS.gene012897.t1 | MTR_7g012820 | 44.284 | 901 | 407 | 15 | 76 | 903 | 62 | 940 | 0.0 | 721 |
| MS.gene012897.t1 | MTR_7g012820 | 44.812 | 877 | 391 | 14 | 98 | 903 | 15 | 869 | 0.0 | 720 |
| MS.gene012897.t1 | MTR_3g106160 | 44.546 | 871 | 399 | 11 | 100 | 903 | 96 | 949 | 0.0 | 711 |
| MS.gene012897.t1 | MTR_4g109450 | 41.847 | 877 | 421 | 13 | 98 | 907 | 4 | 858 | 0.0 | 651 |
| MS.gene012897.t1 | MTR_4g109450 | 42.326 | 834 | 392 | 13 | 98 | 864 | 4 | 815 | 0.0 | 626 |
| MS.gene012897.t1 | MTR_7g028970 | 41.932 | 880 | 419 | 16 | 99 | 910 | 5 | 860 | 0.0 | 624 |
| MS.gene012897.t1 | MTR_3g098310 | 45.402 | 696 | 328 | 10 | 96 | 746 | 100 | 788 | 0.0 | 585 |
| MS.gene012897.t1 | MTR_6g048860 | 91.772 | 158 | 9 | 1 | 232 | 389 | 112 | 265 | 1.57e-89 | 289 |
| MS.gene012897.t1 | MTR_2g099075 | 40.000 | 330 | 181 | 3 | 582 | 910 | 143 | 456 | 1.43e-74 | 253 |
| MS.gene012897.t1 | MTR_2g006950 | 36.294 | 394 | 220 | 6 | 508 | 899 | 11 | 375 | 5.64e-70 | 244 |
| MS.gene012897.t1 | MTR_2g006950 | 33.803 | 213 | 109 | 5 | 702 | 910 | 371 | 555 | 6.64e-27 | 117 |
| MS.gene012897.t1 | MTR_1g076440 | 83.810 | 105 | 17 | 0 | 129 | 233 | 7 | 111 | 3.91e-49 | 177 |
| MS.gene012897.t1 | MTR_1g076440 | 62.143 | 140 | 42 | 2 | 659 | 798 | 147 | 275 | 1.73e-42 | 157 |
| MS.gene012897.t1 | MTR_1g076440 | 91.892 | 37 | 1 | 1 | 891 | 927 | 276 | 310 | 9.03e-12 | 67.8 |
| MS.gene012897.t1 | MTR_1614s0010 | 37.313 | 201 | 107 | 4 | 677 | 875 | 1 | 184 | 3.41e-29 | 115 |
| MS.gene012897.t1 | MTR_5g098360 | 40.000 | 95 | 56 | 1 | 597 | 691 | 74 | 167 | 2.92e-18 | 83.6 |
| MS.gene012897.t1 | MTR_5g011550 | 28.906 | 128 | 88 | 2 | 99 | 223 | 85 | 212 | 6.77e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012897.t1 | AT5G50920 | 86.466 | 931 | 114 | 7 | 2 | 927 | 5 | 928 | 0.0 | 1561 |
| MS.gene012897.t1 | AT3G48870 | 85.102 | 886 | 128 | 2 | 32 | 916 | 21 | 903 | 0.0 | 1481 |
| MS.gene012897.t1 | AT3G48870 | 85.102 | 886 | 128 | 2 | 32 | 916 | 52 | 934 | 0.0 | 1479 |
| MS.gene012897.t1 | AT3G48870 | 85.102 | 886 | 128 | 2 | 32 | 916 | 52 | 934 | 0.0 | 1479 |
| MS.gene012897.t1 | AT3G48870 | 85.102 | 886 | 128 | 2 | 32 | 916 | 52 | 934 | 0.0 | 1479 |
| MS.gene012897.t1 | AT5G51070 | 48.775 | 857 | 385 | 10 | 95 | 907 | 78 | 924 | 0.0 | 768 |
| MS.gene012897.t1 | AT5G15450 | 43.623 | 933 | 435 | 15 | 43 | 903 | 20 | 933 | 0.0 | 714 |
| MS.gene012897.t1 | AT2G25140 | 43.237 | 902 | 416 | 13 | 91 | 917 | 77 | 957 | 0.0 | 712 |
| MS.gene012897.t1 | AT1G74310 | 42.396 | 868 | 416 | 13 | 98 | 902 | 4 | 850 | 0.0 | 659 |
| MS.gene012897.t1 | AT1G74310 | 42.771 | 830 | 391 | 13 | 98 | 864 | 4 | 812 | 0.0 | 633 |
| MS.gene012897.t1 | AT4G14670 | 42.958 | 568 | 245 | 10 | 191 | 700 | 77 | 623 | 3.38e-140 | 432 |
| MS.gene012897.t1 | AT3G45450 | 60.548 | 365 | 97 | 7 | 96 | 458 | 1 | 320 | 9.90e-124 | 379 |
| MS.gene012897.t1 | AT4G30350 | 30.409 | 171 | 106 | 3 | 592 | 762 | 563 | 720 | 3.77e-13 | 74.3 |
| MS.gene012897.t1 | AT4G12060 | 28.652 | 178 | 117 | 5 | 49 | 223 | 50 | 220 | 5.35e-11 | 64.3 |
Find 251 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTCCCTCTATGGTTTC+AGG | 0.100613 | 3.4:-90492402 | None:intergenic |
| CGCACGTGTTCTTGAAAATT+TGG | 0.126955 | 3.4:+90491849 | MS.gene012897:CDS |
| TCTCGGTGACAGAGAGATTT+AGG | 0.140708 | 3.4:+90495306 | MS.gene012897:CDS |
| CTTCCACGCGAGAGTCTTTC+AGG | 0.146397 | 3.4:-90491361 | None:intergenic |
| GCTTGACATGAGCGAATTTA+TGG | 0.159830 | 3.4:+90494788 | MS.gene012897:CDS |
| CAACATGATGCTTCAAATTC+TGG | 0.187197 | 3.4:+90494956 | MS.gene012897:CDS |
| CGGATCTGAGCACCTGCTTT+TGG | 0.194234 | 3.4:+90491798 | MS.gene012897:CDS |
| AAAATAATCCTTGTCTTATT+GGG | 0.195129 | 3.4:+90492313 | MS.gene012897:CDS |
| ATCAAAATCCTAGGGAAAAT+TGG | 0.199430 | 3.4:+90492227 | MS.gene012897:intron |
| CTCTGCTAGCTTGGTCAAAT+TGG | 0.202101 | 3.4:-90492105 | None:intergenic |
| TTAGGTTATAACTCTGGATA+TGG | 0.231513 | 3.4:+90492670 | MS.gene012897:intron |
| ACCTTACACAAACGCATTAT+TGG | 0.236179 | 3.4:+90494588 | MS.gene012897:CDS |
| ACCAACCTGCTTTCCCTCTA+TGG | 0.247395 | 3.4:-90492409 | None:intergenic |
| TAGAATCATGTCTAGGGTTT+TGG | 0.250519 | 3.4:+90490905 | None:intergenic |
| TCAAGTCCTCTTGCTTCTTC+AGG | 0.256167 | 3.4:-90494028 | None:intergenic |
| GTTGGCTCTGGCACTTTAAC+TGG | 0.258175 | 3.4:-90493383 | None:intergenic |
| AGAGACTCGGGCAATGAATT+TGG | 0.261614 | 3.4:-90495518 | None:intergenic |
| AAATACTTATGCAGTGTATA+GGG | 0.275098 | 3.4:+90493294 | MS.gene012897:intron |
| TGCTAAGGTTCTAAAGTCTA+TGG | 0.277785 | 3.4:+90491331 | MS.gene012897:CDS |
| GCACGTGTTCTTGAAAATTT+GGG | 0.281105 | 3.4:+90491850 | MS.gene012897:CDS |
| AAGAGCTATAATGCGACTTT+TGG | 0.284061 | 3.4:+90495382 | MS.gene012897:CDS |
| ATTACGTCCTTTGAACTCTT+TGG | 0.285314 | 3.4:+90491070 | MS.gene012897:CDS |
| CACCGAGAGCTCAATCTCTT+TGG | 0.293521 | 3.4:-90495291 | None:intergenic |
| TAAATACTTATGCAGTGTAT+AGG | 0.300680 | 3.4:+90493293 | MS.gene012897:intron |
| CGCATTATAGCTCTTCTTAG+AGG | 0.323792 | 3.4:-90495374 | None:intergenic |
| GTGGAAGTTGAAAAGATAAT+TGG | 0.327154 | 3.4:+90491377 | MS.gene012897:CDS |
| TCCGCGTGCCAAGAGAGTTT+TGG | 0.332554 | 3.4:+90491439 | MS.gene012897:CDS |
| GTGAGGGTGCTGACAATGTT+GGG | 0.335259 | 3.4:+90492024 | MS.gene012897:CDS |
| TGAACGTGTTACTCAAATCT+TGG | 0.342471 | 3.4:+90492278 | MS.gene012897:CDS |
| AAGCTGGCAATCGGCCGGTT+AGG | 0.355998 | 3.4:-90494675 | None:intergenic |
| CTCTTGGCACGCGGAGTAAA+CGG | 0.356129 | 3.4:-90491431 | None:intergenic |
| TTTCAGGCAACTTACAAAAC+TGG | 0.356617 | 3.4:+90495214 | MS.gene012897:CDS |
| TTTCTAGGTCACAATTATAT+CGG | 0.363485 | 3.4:+90491778 | MS.gene012897:intron |
| TCAAAGAGTACAACAGTATA+GGG | 0.366004 | 3.4:-90494903 | None:intergenic |
| CTTAGAATGAAAATCTTGTC+TGG | 0.369749 | 3.4:-90491108 | None:intergenic |
| CGGAGGTGAACCAATGAGTT+TGG | 0.370786 | 3.4:-90494826 | None:intergenic |
| ATGCGAATGTCTGGTTTCTC+TGG | 0.383078 | 3.4:+90491047 | MS.gene012897:CDS |
| CTCGGTGACAGAGAGATTTA+GGG | 0.386306 | 3.4:+90495307 | MS.gene012897:CDS |
| GTAGTATGAGGCCAATGTTT+TGG | 0.397446 | 3.4:-90494739 | None:intergenic |
| CCTTGTCTTATTGGGGAACC+TGG | 0.397535 | 3.4:+90492321 | MS.gene012897:CDS |
| AGCTGTCATATCAATATATC+AGG | 0.398244 | 3.4:+90493504 | MS.gene012897:CDS |
| GATATGGGTCTACTTGTTGC+TGG | 0.403560 | 3.4:+90492686 | MS.gene012897:CDS |
| GGATAAAGAAATGGATCTTA+AGG | 0.405165 | 3.4:+90494386 | MS.gene012897:CDS |
| GCTTTCCCTCTATGGTTTCA+GGG | 0.405959 | 3.4:-90492401 | None:intergenic |
| TCGGCGGATAGCACGGCTAA+TGG | 0.414424 | 3.4:-90494631 | None:intergenic |
| GGAGGTTAGGCAGATAGTTA+AGG | 0.414639 | 3.4:+90494054 | MS.gene012897:CDS |
| ACCAATAATGCGTTTGTGTA+AGG | 0.422221 | 3.4:-90494589 | None:intergenic |
| TGGGAGGCTAACAGATAGTA+AGG | 0.426292 | 3.4:+90494983 | MS.gene012897:CDS |
| ATGCCAACTTTGGAGGAGTA+TGG | 0.429557 | 3.4:+90492080 | MS.gene012897:CDS |
| TCAACTGAGACTTTATCAAC+AGG | 0.436921 | 3.4:-90494534 | None:intergenic |
| ATTGGTGAAGGCACTGGTAT+TGG | 0.438124 | 3.4:+90491308 | MS.gene012897:CDS |
| GTTTCACTCACAGTTGGCTC+TGG | 0.438691 | 3.4:-90493395 | None:intergenic |
| ACATTGGCCTCATACTACTT+TGG | 0.440804 | 3.4:+90494744 | MS.gene012897:CDS |
| GATGAAGTGCACACTCTCAT+TGG | 0.443128 | 3.4:+90492794 | MS.gene012897:CDS |
| GAACGTGTTACTCAAATCTT+GGG | 0.444979 | 3.4:+90492279 | MS.gene012897:CDS |
| TATAGCTCTTCTTAGAGGTC+TGG | 0.445858 | 3.4:-90495369 | None:intergenic |
| ATCAAAGAGTACAACAGTAT+AGG | 0.446881 | 3.4:-90494904 | None:intergenic |
| GTTGGGGCTACTGTTGGCTC+TGG | 0.447309 | 3.4:+90492041 | MS.gene012897:CDS |
| CTTCGACCAGCCACTAGGCC+GGG | 0.448708 | 3.4:-90490945 | None:intergenic |
| ACTGCTACAATGCGAATGTC+TGG | 0.449766 | 3.4:+90491038 | MS.gene012897:CDS |
| TTAGGCCAGAGTTCTTGAAT+AGG | 0.449813 | 3.4:+90495174 | MS.gene012897:CDS |
| AGAGAGATTTAGGGAGAGAG+TGG | 0.450512 | 3.4:+90495316 | MS.gene012897:CDS |
| CATATTGTTGCCGCCTGGAC+TGG | 0.450552 | 3.4:+90494507 | MS.gene012897:CDS |
| GGGTCTTCTTCGAGAGGGTG+AGG | 0.450707 | 3.4:+90491819 | MS.gene012897:CDS |
| AAGATAATTGGAAGGGGTAG+TGG | 0.451151 | 3.4:+90491389 | MS.gene012897:CDS |
| ATCAAATCTATAGCTTTGTC+AGG | 0.451675 | 3.4:-90493873 | None:intergenic |
| ATGCTTCAAATTCTGGAAGA+TGG | 0.451874 | 3.4:+90494963 | MS.gene012897:CDS |
| TGAGTAACACGTTCAATTTG+TGG | 0.454252 | 3.4:-90492270 | None:intergenic |
| GGTGAGGGTGCTGACAATGT+TGG | 0.456250 | 3.4:+90492023 | MS.gene012897:CDS |
| AGTTACCTCCTCTGCTAGCT+TGG | 0.457680 | 3.4:-90492114 | None:intergenic |
| AATAGAGCAAGGGGTGGTAG+AGG | 0.458667 | 3.4:+90491152 | MS.gene012897:CDS |
| AGCCATGTTTGAGCGTTTCA+CGG | 0.458933 | 3.4:+90491193 | MS.gene012897:CDS |
| CAAACTCATTGGTTCACCTC+CGG | 0.462565 | 3.4:+90494827 | MS.gene012897:CDS |
| AGCAAGGCAGAGAGTGAGGC+AGG | 0.463527 | 3.4:+90494447 | MS.gene012897:CDS |
| AACGTCCCCGGCCTAGTGGC+TGG | 0.463587 | 3.4:+90490939 | MS.gene012897:CDS |
| AGCATCATGTTGAAGACATC+AGG | 0.464962 | 3.4:-90494945 | None:intergenic |
| GCCAGAGTTCTTGAATAGGC+TGG | 0.465682 | 3.4:+90495178 | MS.gene012897:CDS |
| GAGGACTTGAAAAGGAGGTT+AGG | 0.468047 | 3.4:+90494041 | MS.gene012897:CDS |
| GGTCTTATTGGTGAAGGCAC+TGG | 0.469001 | 3.4:+90491302 | MS.gene012897:CDS |
| AGCTGGCAATCGGCCGGTTA+GGG | 0.470925 | 3.4:-90494674 | None:intergenic |
| AGGAGCTGAAGCAATACTTT+AGG | 0.471670 | 3.4:+90495156 | MS.gene012897:CDS |
| GCTCTGGCACTTTAACTGGC+TGG | 0.472399 | 3.4:-90493379 | None:intergenic |
| GAGAGTGAGGCAGGAGATGT+AGG | 0.476103 | 3.4:+90494456 | MS.gene012897:CDS |
| TGGAATCTCCTCTCCAAAGC+TGG | 0.479271 | 3.4:-90493359 | None:intergenic |
| AAACTCATTGGTTCACCTCC+GGG | 0.479765 | 3.4:+90494828 | MS.gene012897:CDS |
| TAAATATCGAGGAGAATTTG+AGG | 0.479803 | 3.4:+90492712 | MS.gene012897:CDS |
| ATCACCATTTGCAATCCGTT+GGG | 0.479951 | 3.4:-90492376 | None:intergenic |
| AACCAAAGAGATTGAGCTCT+CGG | 0.480234 | 3.4:+90495289 | MS.gene012897:CDS |
| ATCTGATCGCCTTCTCAAGA+TGG | 0.482687 | 3.4:+90494560 | MS.gene012897:CDS |
| TGTGGCTGCCTACCCACAAC+AGG | 0.484594 | 3.4:-90492252 | None:intergenic |
| TAATAGCAAGATGCCAACTT+TGG | 0.484716 | 3.4:+90492070 | MS.gene012897:CDS |
| CACACAGTCTCCAAACTCAT+TGG | 0.487127 | 3.4:+90494816 | MS.gene012897:CDS |
| CCTTCGACCAGCCACTAGGC+CGG | 0.487507 | 3.4:-90490946 | None:intergenic |
| TCAAGAGGAAGCTAGGCGGC+TGG | 0.487637 | 3.4:+90491244 | MS.gene012897:CDS |
| CATCACCATTTGCAATCCGT+TGG | 0.487841 | 3.4:-90492377 | None:intergenic |
| GACAATGTTGGGGCTACTGT+TGG | 0.488557 | 3.4:+90492035 | MS.gene012897:CDS |
| AGAGCTACGGGATAAAGAAA+TGG | 0.489616 | 3.4:+90494377 | MS.gene012897:CDS |
| CATGATTTAGGTTATAACTC+TGG | 0.491292 | 3.4:+90492664 | MS.gene012897:intron |
| ACTTACAAAACTGGAGGTTA+AGG | 0.491625 | 3.4:+90495223 | MS.gene012897:CDS |
| GAAAAGATGAAGCTGGCAAT+CGG | 0.492611 | 3.4:-90494684 | None:intergenic |
| CTCGCCCAACGGATTGCAAA+TGG | 0.493109 | 3.4:+90492372 | MS.gene012897:CDS |
| GATCTGAAGAAGCCATGATT+CGG | 0.495790 | 3.4:+90494766 | MS.gene012897:CDS |
| GGAAAATTGGATCCTGTTGT+GGG | 0.497774 | 3.4:+90492240 | MS.gene012897:CDS |
| TGAGAGTTCCAAAACTCTCT+TGG | 0.497854 | 3.4:-90491447 | None:intergenic |
| CACGAGCTCGGCGGATAGCA+CGG | 0.498274 | 3.4:-90494638 | None:intergenic |
| AGAGGGTGACTCTGTTATAG+TGG | 0.499343 | 3.4:+90495445 | MS.gene012897:CDS |
| GAAGGTTATAATCCTAGTTA+TGG | 0.501031 | 3.4:+90495344 | MS.gene012897:CDS |
| AGTTATTATGCTGGCTCAAG+AGG | 0.501600 | 3.4:+90491229 | MS.gene012897:CDS |
| AGAAGCAAGAGGACTTGAAA+AGG | 0.502649 | 3.4:+90494033 | MS.gene012897:CDS |
| GCTCATGTCAAGCCGAATCA+TGG | 0.503230 | 3.4:-90494778 | None:intergenic |
| ATCAACAGGGATACCAGTCC+AGG | 0.503737 | 3.4:-90494520 | None:intergenic |
| GCCTGGGTGCGAATATTAGT+TGG | 0.503945 | 3.4:-90491880 | None:intergenic |
| TCTAAGGTGCTCACTCAGAT+TGG | 0.504328 | 3.4:+90491125 | MS.gene012897:CDS |
| TGTATTGTTTCACTCACAGT+TGG | 0.506356 | 3.4:-90493401 | None:intergenic |
| CAAGAGCATCATCGGTATAA+CGG | 0.506415 | 3.4:-90493469 | None:intergenic |
| GGGAAAATTGGATCCTGTTG+TGG | 0.507874 | 3.4:+90492239 | MS.gene012897:intron |
| TCTTCGAGAGGGTGAGGGTG+TGG | 0.509014 | 3.4:+90491825 | MS.gene012897:CDS |
| TGAATAGGCTGGAGAGCTAC+GGG | 0.510340 | 3.4:+90494365 | MS.gene012897:intron |
| CCGGCCTAGTGGCTGGTCGA+AGG | 0.513011 | 3.4:+90490946 | MS.gene012897:CDS |
| ATAGATTTGATTGACGAAGC+TGG | 0.513521 | 3.4:+90493885 | MS.gene012897:CDS |
| CTGAATAGGCTGGAGAGCTA+CGG | 0.514789 | 3.4:+90494364 | MS.gene012897:intron |
| CTTATAATGACATCAAATGT+TGG | 0.515383 | 3.4:+90495035 | MS.gene012897:CDS |
| AGAGGTCTGGCACCATAACT+AGG | 0.516524 | 3.4:-90495356 | None:intergenic |
| CAAGAGGAAGCTAGGCGGCT+GGG | 0.518796 | 3.4:+90491245 | MS.gene012897:CDS |
| TTCAGATCCAAAGTAGTATG+AGG | 0.520690 | 3.4:-90494751 | None:intergenic |
| GTGCATGTTGAAGTCGAACT+CGG | 0.521141 | 3.4:-90493911 | None:intergenic |
| GTGCCATACTCCTCCAAAGT+TGG | 0.521933 | 3.4:-90492083 | None:intergenic |
| TGCTTCAAATTCTGGAAGAT+GGG | 0.523168 | 3.4:+90494964 | MS.gene012897:CDS |
| GGTCTTCTTCGAGAGGGTGA+GGG | 0.523904 | 3.4:+90491820 | MS.gene012897:CDS |
| CTCAGTCAATTGACCACCCT+CGG | 0.523973 | 3.4:-90494865 | None:intergenic |
| TAGGTTATAACTCTGGATAT+GGG | 0.524032 | 3.4:+90492671 | MS.gene012897:intron |
| GAAACAATACAAATATTGAA+AGG | 0.525913 | 3.4:+90493413 | MS.gene012897:CDS |
| TCGCAATCAAGAATTTGAAA+AGG | 0.526527 | 3.4:+90494093 | MS.gene012897:CDS |
| TACAACATATTGTTGCCGCC+TGG | 0.526555 | 3.4:+90494502 | MS.gene012897:CDS |
| CCACAACACTAGATGAATAC+AGG | 0.528109 | 3.4:+90493318 | MS.gene012897:CDS |
| GCTAAGGTTCTAAAGTCTAT+GGG | 0.528708 | 3.4:+90491332 | MS.gene012897:CDS |
| CATGCCTTCGACCAGCCACT+AGG | 0.529171 | 3.4:-90490950 | None:intergenic |
| AAACAATACAAATATTGAAA+GGG | 0.529564 | 3.4:+90493414 | MS.gene012897:CDS |
| GCTATCCGCCGAGCTCGTGT+TGG | 0.533622 | 3.4:+90494642 | MS.gene012897:CDS |
| AAATAATCCTTGTCTTATTG+GGG | 0.534007 | 3.4:+90492314 | MS.gene012897:CDS |
| GTGCACACTCTCATTGGAGC+AGG | 0.534139 | 3.4:+90492800 | MS.gene012897:CDS |
| AGCGATCAAAGTTATTATGC+TGG | 0.535152 | 3.4:+90491220 | MS.gene012897:CDS |
| TTGGACTTAAGAACCCTAAC+CGG | 0.535590 | 3.4:+90494661 | MS.gene012897:CDS |
| CTCGAAGAAGACCCAAAAGC+AGG | 0.536165 | 3.4:-90491810 | None:intergenic |
| AGGGAGAGAGTGGTTGACGA+AGG | 0.536287 | 3.4:+90495326 | MS.gene012897:CDS |
| TCTTGCTAGAGGTGAACTAC+AGG | 0.537146 | 3.4:+90492868 | MS.gene012897:CDS |
| ATAGCTGTCTTTCCGACACC+AGG | 0.539131 | 3.4:-90492339 | None:intergenic |
| GGTTCACCTCCGGGATATGT+TGG | 0.540586 | 3.4:+90494837 | MS.gene012897:CDS |
| TTGGAGGAAGCTCGCCAACT+TGG | 0.541008 | 3.4:+90491470 | MS.gene012897:CDS |
| TAGCAAGATGCCAACTTTGG+AGG | 0.541747 | 3.4:+90492073 | MS.gene012897:CDS |
| TTCGACCAGCCACTAGGCCG+GGG | 0.543761 | 3.4:-90490944 | None:intergenic |
| TTGTTGGGTCTTATTGGTGA+AGG | 0.545049 | 3.4:+90491296 | MS.gene012897:CDS |
| AGGCACTGGTATTGGTGCTA+AGG | 0.545166 | 3.4:+90491316 | MS.gene012897:CDS |
| GGAAGCAGTGTGATTGAGAA+AGG | 0.546826 | 3.4:+90495056 | MS.gene012897:CDS |
| GTCTGAGTTGGCCAAAACAT+TGG | 0.548843 | 3.4:+90494728 | MS.gene012897:CDS |
| TTAGAATGAAAATCTTGTCT+GGG | 0.550033 | 3.4:-90491107 | None:intergenic |
| AGGGGAACAGGTTATTCGAA+TGG | 0.551374 | 3.4:+90491998 | MS.gene012897:intron |
| TCCAGCCTATTCAAGAACTC+TGG | 0.552565 | 3.4:-90495179 | None:intergenic |
| AGATGAAGCTGGCAATCGGC+CGG | 0.553474 | 3.4:-90494680 | None:intergenic |
| CTCCGTGAAACGCTCAAACA+TGG | 0.556050 | 3.4:-90491195 | None:intergenic |
| AGCAGCTACAAGAGCATCAT+CGG | 0.556339 | 3.4:-90493477 | None:intergenic |
| AGTTCACCTCTAGCAAGAGC+TGG | 0.557640 | 3.4:-90492863 | None:intergenic |
| GAACAGGTTATTCGAATGGT+TGG | 0.558387 | 3.4:+90492002 | MS.gene012897:intron |
| TGCATGTTGAAGTCGAACTC+GGG | 0.563322 | 3.4:-90493910 | None:intergenic |
| GATGAGCAAGGCAGAGAGTG+AGG | 0.564477 | 3.4:+90494443 | MS.gene012897:CDS |
| AATACTTATGCAGTGTATAG+GGG | 0.564843 | 3.4:+90493295 | MS.gene012897:intron |
| TGGAGCAGGAGCAGCTGAAG+GGG | 0.565092 | 3.4:+90492814 | MS.gene012897:CDS |
| GATTAACGTCCCCGGCCTAG+TGG | 0.565737 | 3.4:+90490935 | MS.gene012897:CDS |
| AAAGTATTGCTTCAGCTCCT+CGG | 0.566849 | 3.4:-90495153 | None:intergenic |
| ATTGGAGCAGGAGCAGCTGA+AGG | 0.567685 | 3.4:+90492812 | MS.gene012897:CDS |
| TGAAACCATAGAGGGAAAGC+AGG | 0.568538 | 3.4:+90492404 | MS.gene012897:CDS |
| TTATAACCGAATCAAAAGCT+TGG | 0.568690 | 3.4:+90495127 | MS.gene012897:CDS |
| TATGCTATCACTTACCAAGT+TGG | 0.569341 | 3.4:-90491484 | None:intergenic |
| TGCTGGCTCAAGAGGAAGCT+AGG | 0.570017 | 3.4:+90491237 | MS.gene012897:CDS |
| TGACCTTGACTATGATGAGA+AGG | 0.570760 | 3.4:+90495097 | MS.gene012897:CDS |
| GAGAAAGGAGGCCGTCGCAT+AGG | 0.571102 | 3.4:+90495071 | MS.gene012897:CDS |
| CATCGGTATAACGGAGCTTG+TGG | 0.572339 | 3.4:-90493460 | None:intergenic |
| AGGCATGTCAATAATAACAA+TGG | 0.572370 | 3.4:+90490966 | MS.gene012897:CDS |
| TTGGAGCAGGAGCAGCTGAA+GGG | 0.572486 | 3.4:+90492813 | MS.gene012897:CDS |
| TTGCTGAAGGTCTCGCCCAA+CGG | 0.577227 | 3.4:+90492361 | MS.gene012897:CDS |
| AGCTGAAGGGGCAATTGATG+CGG | 0.578062 | 3.4:+90492826 | MS.gene012897:CDS |
| GCTTGCTAGAGAGATTAAAG+AGG | 0.579607 | 3.4:+90495427 | MS.gene012897:CDS |
| TCTTAAGTCCAACACGAGCT+CGG | 0.580226 | 3.4:-90494650 | None:intergenic |
| TCGGTATAACCAACATATCC+CGG | 0.581823 | 3.4:-90494846 | None:intergenic |
| CCTGTATTCATCTAGTGTTG+TGG | 0.581971 | 3.4:-90493318 | None:intergenic |
| GGATATGTTGGTTATACCGA+GGG | 0.583016 | 3.4:+90494849 | MS.gene012897:CDS |
| TTTCTGGCCCTACTGGTGTG+GGG | 0.583111 | 3.4:+90494703 | MS.gene012897:CDS |
| GATAGCTGATATAATGCTGA+AGG | 0.585043 | 3.4:+90495247 | MS.gene012897:CDS |
| AGGGCCAGAAAAGATGAAGC+TGG | 0.586569 | 3.4:-90494691 | None:intergenic |
| CTTATTGGGGAACCTGGTGT+CGG | 0.589543 | 3.4:+90492327 | MS.gene012897:CDS |
| TGGTGTGGGGAAGTCTGAGT+TGG | 0.592757 | 3.4:+90494716 | MS.gene012897:CDS |
| GTTATTCGAATGGTTGGTGA+GGG | 0.593949 | 3.4:+90492008 | MS.gene012897:CDS |
| TCAGACTTCCCCACACCAGT+AGG | 0.594609 | 3.4:-90494711 | None:intergenic |
| AGCAAGAGGACTTGAAAAGG+AGG | 0.596313 | 3.4:+90494036 | MS.gene012897:CDS |
| GGAAATGTGATTGTGCTCAA+TGG | 0.597832 | 3.4:+90495482 | MS.gene012897:CDS |
| TGAGGGTGCTGACAATGTTG+GGG | 0.598035 | 3.4:+90492025 | MS.gene012897:CDS |
| AGTTGAAAAGATAATTGGAA+GGG | 0.598116 | 3.4:+90491382 | MS.gene012897:CDS |
| GATTGGTACTAATAGAGCAA+GGG | 0.598171 | 3.4:+90491142 | MS.gene012897:CDS |
| CAGGCAACTTACAAAACTGG+AGG | 0.601353 | 3.4:+90495217 | MS.gene012897:CDS |
| ATGTTACACAGGAAGAGACT+CGG | 0.602576 | 3.4:-90495531 | None:intergenic |
| ATAGAATCCAAAGAGTTCAA+AGG | 0.604996 | 3.4:-90491077 | None:intergenic |
| CAGTTACCTGAAGAAGCAAG+AGG | 0.605964 | 3.4:+90494022 | MS.gene012897:intron |
| GTTGAAAAGATAATTGGAAG+GGG | 0.606519 | 3.4:+90491383 | MS.gene012897:CDS |
| TTTGACCAAGCTAGCAGAGG+AGG | 0.607369 | 3.4:+90492109 | MS.gene012897:CDS |
| AGATTGGTACTAATAGAGCA+AGG | 0.608222 | 3.4:+90491141 | MS.gene012897:CDS |
| GCACAGTCGATTAACGTCCC+CGG | 0.608320 | 3.4:+90490927 | MS.gene012897:CDS |
| TGATGTCCCTGAAACCATAG+AGG | 0.608411 | 3.4:+90492395 | MS.gene012897:CDS |
| CATGTTGAAGACATCAGGAT+GGG | 0.610516 | 3.4:-90494940 | None:intergenic |
| CAGACTTCCCCACACCAGTA+GGG | 0.611504 | 3.4:-90494710 | None:intergenic |
| AGGTCTCTTCCATCTTGAGA+AGG | 0.614391 | 3.4:-90494569 | None:intergenic |
| AGTTCGACTTCAACATGCAC+AGG | 0.614688 | 3.4:+90493914 | MS.gene012897:CDS |
| TTGAAACCAGCTCTTGCTAG+AGG | 0.615304 | 3.4:+90492857 | MS.gene012897:CDS |
| GGAAAGACAGCTATTGCTGA+AGG | 0.616017 | 3.4:+90492348 | MS.gene012897:CDS |
| CTTGCTAGAGAGATTAAAGA+GGG | 0.623990 | 3.4:+90495428 | MS.gene012897:CDS |
| AATTGGATCCTGTTGTGGGT+AGG | 0.625477 | 3.4:+90492244 | MS.gene012897:CDS |
| ATTGTGCTCAATGGTAGTAG+TGG | 0.625985 | 3.4:+90495491 | MS.gene012897:CDS |
| TCATGTTGAAGACATCAGGA+TGG | 0.628699 | 3.4:-90494941 | None:intergenic |
| GGTTATTCGAATGGTTGGTG+AGG | 0.630747 | 3.4:+90492007 | MS.gene012897:intron |
| TGTTACACAGGAAGAGACTC+GGG | 0.631623 | 3.4:-90495530 | None:intergenic |
| TGTCCTTCTCATCATAGTCA+AGG | 0.633612 | 3.4:-90495100 | None:intergenic |
| AGACCTAGGTCTTGATCTCG+CGG | 0.633922 | 3.4:-90490991 | None:intergenic |
| ATTGGTACTAATAGAGCAAG+GGG | 0.634310 | 3.4:+90491143 | MS.gene012897:CDS |
| ACAAGTACACAATGTTACAC+AGG | 0.636724 | 3.4:-90495542 | None:intergenic |
| GGGATATGTTGGTTATACCG+AGG | 0.637510 | 3.4:+90494848 | MS.gene012897:CDS |
| TTCAAATTCTGGAAGATGGG+AGG | 0.638703 | 3.4:+90494967 | MS.gene012897:CDS |
| AGCTGATATAATGCTGAAGG+AGG | 0.638939 | 3.4:+90495250 | MS.gene012897:CDS |
| CAAGGTCAAATCCTATGCGA+CGG | 0.639546 | 3.4:-90495082 | None:intergenic |
| AAGTTGAAAAGATAATTGGA+AGG | 0.639691 | 3.4:+90491381 | MS.gene012897:CDS |
| TCCAAAACTCTCTTGGCACG+CGG | 0.640826 | 3.4:-90491440 | None:intergenic |
| TACATCATTCTGACAGACCT+AGG | 0.643234 | 3.4:-90491005 | None:intergenic |
| GATCCGCGAGATCAAGACCT+AGG | 0.650976 | 3.4:+90490988 | MS.gene012897:CDS |
| CCAGGTTCCCCAATAAGACA+AGG | 0.651573 | 3.4:-90492321 | None:intergenic |
| AATCAAAAGCTTGGTGACCG+AGG | 0.652415 | 3.4:+90495136 | MS.gene012897:CDS |
| CAACTGAGACTTTATCAACA+GGG | 0.655191 | 3.4:-90494533 | None:intergenic |
| GGGAGGCTAACAGATAGTAA+GGG | 0.655267 | 3.4:+90494984 | MS.gene012897:CDS |
| TAACCTGAAAGACTCTCGCG+TGG | 0.657562 | 3.4:+90491358 | MS.gene012897:CDS |
| ACATGAGCGAATTTATGGAA+CGG | 0.659884 | 3.4:+90494793 | MS.gene012897:CDS |
| ATAGTGGATGCTGATTCTGA+TGG | 0.662089 | 3.4:+90495461 | MS.gene012897:CDS |
| TATGTTGGTTATACCGAGGG+TGG | 0.666290 | 3.4:+90494852 | MS.gene012897:CDS |
| CAATTTGACCAAGCTAGCAG+AGG | 0.667069 | 3.4:+90492106 | MS.gene012897:CDS |
| TAAGTCCAACACGAGCTCGG+CGG | 0.668859 | 3.4:-90494647 | None:intergenic |
| TCCAACTAATATTCGCACCC+AGG | 0.669218 | 3.4:+90491879 | MS.gene012897:CDS |
| AGAGTACAACAGTATAGGGA+CGG | 0.669857 | 3.4:-90494899 | None:intergenic |
| AGCAGTGTGATTGAGAAAGG+AGG | 0.675394 | 3.4:+90495059 | MS.gene012897:CDS |
| GATGTCCCTGAAACCATAGA+GGG | 0.678856 | 3.4:+90492396 | MS.gene012897:CDS |
| GGTACTAATAGAGCAAGGGG+TGG | 0.680045 | 3.4:+90491146 | MS.gene012897:CDS |
| GTTGCTGGAACTAAATATCG+AGG | 0.680415 | 3.4:+90492701 | MS.gene012897:CDS |
| AACAGGGATACCAGTCCAGG+CGG | 0.697211 | 3.4:-90494517 | None:intergenic |
| CGAGGGTGGTCAATTGACTG+AGG | 0.703199 | 3.4:+90494866 | MS.gene012897:CDS |
| GTATAACCAACATATCCCGG+AGG | 0.777636 | 3.4:-90494843 | None:intergenic |
| TGGCTCAAGAGGAAGCTAGG+CGG | 0.788911 | 3.4:+90491240 | MS.gene012897:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAAAATTCTGAA+TGG | + | chr3.4:90493172-90493191 | MS.gene012897:intron | 10.0% |
| !! | ATATAATAAATATACGTAAA+CGG | - | chr3.4:90491928-90491947 | None:intergenic | 10.0% |
| !!! | ATTGTTTACAAAATTTATTT+TGG | + | chr3.4:90493737-90493756 | MS.gene012897:intron | 10.0% |
| !!! | TTTTTTTTTTTTAATAGTTC+TGG | + | chr3.4:90493593-90493612 | MS.gene012897:intron | 10.0% |
| !! | AAAAAATGAAATGTTGAAAA+TGG | - | chr3.4:90493136-90493155 | None:intergenic | 15.0% |
| !! | AAAAATGAAATGTTGAAAAT+GGG | - | chr3.4:90493135-90493154 | None:intergenic | 15.0% |
| !! | AAACAATACAAATATTGAAA+GGG | + | chr3.4:90493414-90493433 | MS.gene012897:CDS | 15.0% |
| !! | ACATAATATTAAGCTAATTA+AGG | + | chr3.4:90494197-90494216 | MS.gene012897:intron | 15.0% |
| !!! | AAATTTTGTAAACAATTCAA+AGG | - | chr3.4:90493733-90493752 | None:intergenic | 15.0% |
| !! | AAAAATAATCCTTGTCTTAT+TGG | + | chr3.4:90492312-90492331 | MS.gene012897:CDS | 20.0% |
| !! | ATATGAAAAACGACATATAA+AGG | - | chr3.4:90491510-90491529 | None:intergenic | 20.0% |
| !! | GAAACAATACAAATATTGAA+AGG | + | chr3.4:90493413-90493432 | MS.gene012897:CDS | 20.0% |
| !! | TCAAGCTAAATCTTAAATTA+TGG | - | chr3.4:90494124-90494143 | None:intergenic | 20.0% |
| !!! | AAAATAATCCTTGTCTTATT+GGG | + | chr3.4:90492313-90492332 | MS.gene012897:CDS | 20.0% |
| !!! | AAATTACAAAAGATTGACTT+TGG | - | chr3.4:90493701-90493720 | None:intergenic | 20.0% |
| !!! | AATAAGACAAGGATTATTTT+TGG | - | chr3.4:90492313-90492332 | None:intergenic | 20.0% |
| !!! | TAACATTAACCAACATTTTT+AGG | + | chr3.4:90494144-90494163 | MS.gene012897:intron | 20.0% |
| !!! | TGGAATTTTAGCATATTTTA+TGG | + | chr3.4:90492611-90492630 | MS.gene012897:intron | 20.0% |
| !!! | TTTGTTTACGTTTGAAATTT+TGG | + | chr3.4:90491741-90491760 | MS.gene012897:intron | 20.0% |
| ! | AAACACAACATTACAACAAA+GGG | + | chr3.4:90492567-90492586 | MS.gene012897:intron | 25.0% |
| ! | AAATACTTATGCAGTGTATA+GGG | + | chr3.4:90493294-90493313 | MS.gene012897:intron | 25.0% |
| ! | AAGTTGAAAAGATAATTGGA+AGG | + | chr3.4:90491381-90491400 | MS.gene012897:CDS | 25.0% |
| ! | ACATAAATTAAGATGAAAGC+AGG | - | chr3.4:90491956-90491975 | None:intergenic | 25.0% |
| ! | AGCACTTATACAAAAAAACA+AGG | + | chr3.4:90494419-90494438 | MS.gene012897:CDS | 25.0% |
| ! | AGCCAAAAAGTAAAAGAATT+TGG | - | chr3.4:90494313-90494332 | None:intergenic | 25.0% |
| ! | AGTTGAAAAGATAATTGGAA+GGG | + | chr3.4:90491382-90491401 | MS.gene012897:CDS | 25.0% |
| ! | ATCAAGAATTTGAAAAGGTA+AGG | + | chr3.4:90494098-90494117 | MS.gene012897:intron | 25.0% |
| ! | CTGGTATTGTATGTTTAAAT+GGG | + | chr3.4:90493665-90493684 | MS.gene012897:intron | 25.0% |
| ! | CTTATAATGACATCAAATGT+TGG | + | chr3.4:90495035-90495054 | MS.gene012897:CDS | 25.0% |
| ! | GTTAAGTATCCTAAAAATGT+TGG | - | chr3.4:90494156-90494175 | None:intergenic | 25.0% |
| ! | TAAACACAACATTACAACAA+AGG | + | chr3.4:90492566-90492585 | MS.gene012897:intron | 25.0% |
| ! | TAAATACTTATGCAGTGTAT+AGG | + | chr3.4:90493293-90493312 | MS.gene012897:intron | 25.0% |
| ! | TAATCTCGTATGAAAAAAAG+TGG | - | chr3.4:90494178-90494197 | None:intergenic | 25.0% |
| ! | TCTGGTATTGTATGTTTAAA+TGG | + | chr3.4:90493664-90493683 | MS.gene012897:intron | 25.0% |
| ! | TTAGAATGAAAATCTTGTCT+GGG | - | chr3.4:90491110-90491129 | None:intergenic | 25.0% |
| ! | TTGAAACTTCAGCAAATATA+TGG | - | chr3.4:90493026-90493045 | None:intergenic | 25.0% |
| ! | TTTCTAGGTCACAATTATAT+CGG | + | chr3.4:90491778-90491797 | MS.gene012897:intron | 25.0% |
| !! | AAATAATCCTTGTCTTATTG+GGG | + | chr3.4:90492314-90492333 | MS.gene012897:CDS | 25.0% |
| !! | GAAGTTTCAATAATTAGCTT+TGG | + | chr3.4:90493036-90493055 | MS.gene012897:intron | 25.0% |
| !! | TCTAGTTTACAAATTGTTGT+TGG | + | chr3.4:90492449-90492468 | MS.gene012897:intron | 25.0% |
| !! | TCTTTCTTTTATTAGGAATG+TGG | + | chr3.4:90491705-90491724 | MS.gene012897:intron | 25.0% |
| !! | TTTACAAATTGTTGTTGGTT+TGG | + | chr3.4:90492454-90492473 | MS.gene012897:intron | 25.0% |
| !! | TTTCTGCTCTTTCTTTTATT+AGG | + | chr3.4:90491698-90491717 | MS.gene012897:intron | 25.0% |
| !!! | ACTTTTTGGCTAATAATTAG+CGG | + | chr3.4:90494322-90494341 | MS.gene012897:intron | 25.0% |
| !!! | CTCCAAATTCTTTTACTTTT+TGG | + | chr3.4:90494308-90494327 | MS.gene012897:intron | 25.0% |
| !!! | CTGTTTTAAGTTCTTAGATA+TGG | + | chr3.4:90492591-90492610 | MS.gene012897:intron | 25.0% |
| !!! | TGAAATTTTGGCTTACATTT+TGG | + | chr3.4:90491753-90491772 | MS.gene012897:intron | 25.0% |
| AAAATTCTGAATGGTCACTT+TGG | + | chr3.4:90493181-90493200 | MS.gene012897:intron | 30.0% | |
| AATACTTATGCAGTGTATAG+GGG | + | chr3.4:90493295-90493314 | MS.gene012897:intron | 30.0% | |
| AATCTGTCACTAAGAAAACT+AGG | - | chr3.4:90492146-90492165 | None:intergenic | 30.0% | |
| AGCTGTCATATCAATATATC+AGG | + | chr3.4:90493504-90493523 | MS.gene012897:CDS | 30.0% | |
| AGGCATGTCAATAATAACAA+TGG | + | chr3.4:90490966-90490985 | MS.gene012897:CDS | 30.0% | |
| ATAGAATCCAAAGAGTTCAA+AGG | - | chr3.4:90491080-90491099 | None:intergenic | 30.0% | |
| ATCAAAATCCTAGGGAAAAT+TGG | + | chr3.4:90492227-90492246 | MS.gene012897:intron | 30.0% | |
| ATCAATCAAAGCAACAATCA+AGG | - | chr3.4:90491604-90491623 | None:intergenic | 30.0% | |
| CTTAGAATGAAAATCTTGTC+TGG | - | chr3.4:90491111-90491130 | None:intergenic | 30.0% | |
| GAAGGTTATAATCCTAGTTA+TGG | + | chr3.4:90495344-90495363 | MS.gene012897:CDS | 30.0% | |
| GAGATTGAAAAAACTAATGG+AGG | + | chr3.4:90492736-90492755 | MS.gene012897:CDS | 30.0% | |
| GCACAGCTATATATATTCTT+CGG | - | chr3.4:90493228-90493247 | None:intergenic | 30.0% | |
| GGAGAGATTGAAAAAACTAA+TGG | + | chr3.4:90492733-90492752 | MS.gene012897:CDS | 30.0% | |
| GGATAAAGAAATGGATCTTA+AGG | + | chr3.4:90494386-90494405 | MS.gene012897:CDS | 30.0% | |
| GTGGAAGTTGAAAAGATAAT+TGG | + | chr3.4:90491377-90491396 | MS.gene012897:CDS | 30.0% | |
| GTTGAAAAGATAATTGGAAG+GGG | + | chr3.4:90491383-90491402 | MS.gene012897:CDS | 30.0% | |
| TAAATATCGAGGAGAATTTG+AGG | + | chr3.4:90492712-90492731 | MS.gene012897:CDS | 30.0% | |
| TAATGTTGTGTTTAGTTGTG+TGG | - | chr3.4:90492560-90492579 | None:intergenic | 30.0% | |
| TACTTAAGAGATAGAAGTTG+TGG | - | chr3.4:90493265-90493284 | None:intergenic | 30.0% | |
| TAGGTTATAACTCTGGATAT+GGG | + | chr3.4:90492671-90492690 | MS.gene012897:intron | 30.0% | |
| TCGCAATCAAGAATTTGAAA+AGG | + | chr3.4:90494093-90494112 | MS.gene012897:CDS | 30.0% | |
| TGAAGTTGCTATAGAACTTT+AGG | - | chr3.4:90494236-90494255 | None:intergenic | 30.0% | |
| TGGTACCTTAATTTCTGAAT+AGG | + | chr3.4:90494350-90494369 | MS.gene012897:intron | 30.0% | |
| TTAGGTTATAACTCTGGATA+TGG | + | chr3.4:90492670-90492689 | MS.gene012897:intron | 30.0% | |
| TTATAACCGAATCAAAAGCT+TGG | + | chr3.4:90495127-90495146 | MS.gene012897:CDS | 30.0% | |
| TTATTAAGATGAACAGCAAG+TGG | - | chr3.4:90493822-90493841 | None:intergenic | 30.0% | |
| TTTGTTTGAAGACATTGTAG+TGG | + | chr3.4:90494264-90494283 | MS.gene012897:intron | 30.0% | |
| ! | CAGACAAGATTTTCATTCTA+AGG | + | chr3.4:90491109-90491128 | MS.gene012897:CDS | 30.0% |
| ! | CATGATTTAGGTTATAACTC+TGG | + | chr3.4:90492664-90492683 | MS.gene012897:intron | 30.0% |
| ! | GTTGAAAATGGGTTTAACTT+CGG | - | chr3.4:90493124-90493143 | None:intergenic | 30.0% |
| ! | TGGATGAAATGATTGTTTTC+AGG | + | chr3.4:90495198-90495217 | MS.gene012897:CDS | 30.0% |
| !! | ATCAAATCTATAGCTTTGTC+AGG | - | chr3.4:90493876-90493895 | None:intergenic | 30.0% |
| !! | CAAATTTTGTTGGGTCTTAT+TGG | + | chr3.4:90491290-90491309 | MS.gene012897:CDS | 30.0% |
| !! | CCTCTAAAATCAAAATCCTA+GGG | + | chr3.4:90492219-90492238 | MS.gene012897:intron | 30.0% |
| !! | TCCTCTAAAATCAAAATCCT+AGG | + | chr3.4:90492218-90492237 | MS.gene012897:intron | 30.0% |
| !!! | AGTATTTCACTTTTGACTTG+CGG | + | chr3.4:90492992-90493011 | MS.gene012897:intron | 30.0% |
| !!! | CTTTTTGGCTAATAATTAGC+GGG | + | chr3.4:90494323-90494342 | MS.gene012897:intron | 30.0% |
| !!! | GCTTACATTTTGGAATTTCT+AGG | + | chr3.4:90491763-90491782 | MS.gene012897:intron | 30.0% |
| AAAAAACAAGGAGATGAGCA+AGG | + | chr3.4:90494431-90494450 | MS.gene012897:CDS | 35.0% | |
| AACCTAAATCATGCAGAATG+AGG | - | chr3.4:90492657-90492676 | None:intergenic | 35.0% | |
| ACATGAGCGAATTTATGGAA+CGG | + | chr3.4:90494793-90494812 | MS.gene012897:CDS | 35.0% | |
| ACCAATAATGCGTTTGTGTA+AGG | - | chr3.4:90494592-90494611 | None:intergenic | 35.0% | |
| ACCTTAATTTCTGAATAGGC+TGG | + | chr3.4:90494354-90494373 | MS.gene012897:intron | 35.0% | |
| ACCTTACACAAACGCATTAT+TGG | + | chr3.4:90494588-90494607 | MS.gene012897:CDS | 35.0% | |
| ACTTACAAAACTGGAGGTTA+AGG | + | chr3.4:90495223-90495242 | MS.gene012897:CDS | 35.0% | |
| AGATTGGTACTAATAGAGCA+AGG | + | chr3.4:90491141-90491160 | MS.gene012897:CDS | 35.0% | |
| AGCGATCAAAGTTATTATGC+TGG | + | chr3.4:90491220-90491239 | MS.gene012897:CDS | 35.0% | |
| AGTGGAAAACAACAAGATAC+AGG | - | chr3.4:90493804-90493823 | None:intergenic | 35.0% | |
| ATAGATTTGATTGACGAAGC+TGG | + | chr3.4:90493885-90493904 | MS.gene012897:CDS | 35.0% | |
| ATGAGAACATAATACTAGCC+TGG | - | chr3.4:90491900-90491919 | None:intergenic | 35.0% | |
| ATTACGTCCTTTGAACTCTT+TGG | + | chr3.4:90491070-90491089 | MS.gene012897:CDS | 35.0% | |
| ATTGGTACTAATAGAGCAAG+GGG | + | chr3.4:90491143-90491162 | MS.gene012897:CDS | 35.0% | |
| CAACATGATGCTTCAAATTC+TGG | + | chr3.4:90494956-90494975 | MS.gene012897:CDS | 35.0% | |
| CAACTGAGACTTTATCAACA+GGG | - | chr3.4:90494536-90494555 | None:intergenic | 35.0% | |
| CATTGAAAAAGATCCAGCTT+TGG | + | chr3.4:90493346-90493365 | MS.gene012897:CDS | 35.0% | |
| CGTCTATTGTTGAGCTAATT+GGG | + | chr3.4:90493982-90494001 | MS.gene012897:intron | 35.0% | |
| CTTGCTAGAGAGATTAAAGA+GGG | + | chr3.4:90495428-90495447 | MS.gene012897:CDS | 35.0% | |
| GATAGCTGATATAATGCTGA+AGG | + | chr3.4:90495247-90495266 | MS.gene012897:CDS | 35.0% | |
| GATTGGTACTAATAGAGCAA+GGG | + | chr3.4:90491142-90491161 | MS.gene012897:CDS | 35.0% | |
| GCACGTGTTCTTGAAAATTT+GGG | + | chr3.4:90491850-90491869 | MS.gene012897:CDS | 35.0% | |
| GTGGAAAACAACAAGATACA+GGG | - | chr3.4:90493803-90493822 | None:intergenic | 35.0% | |
| TAATAGCAAGATGCCAACTT+TGG | + | chr3.4:90492070-90492089 | MS.gene012897:CDS | 35.0% | |
| TATGCTATCACTTACCAAGT+TGG | - | chr3.4:90491487-90491506 | None:intergenic | 35.0% | |
| TCAACTGAGACTTTATCAAC+AGG | - | chr3.4:90494537-90494556 | None:intergenic | 35.0% | |
| TCCAGCCTATTCAGAAATTA+AGG | - | chr3.4:90494358-90494377 | None:intergenic | 35.0% | |
| TCGTCTATTGTTGAGCTAAT+TGG | + | chr3.4:90493981-90494000 | MS.gene012897:intron | 35.0% | |
| TGAGTAACACGTTCAATTTG+TGG | - | chr3.4:90492273-90492292 | None:intergenic | 35.0% | |
| TGTATTGTTTCACTCACAGT+TGG | - | chr3.4:90493404-90493423 | None:intergenic | 35.0% | |
| TTCAGATCCAAAGTAGTATG+AGG | - | chr3.4:90494754-90494773 | None:intergenic | 35.0% | |
| TTTCAGGCAACTTACAAAAC+TGG | + | chr3.4:90495214-90495233 | MS.gene012897:CDS | 35.0% | |
| ! | AAGAGCTATAATGCGACTTT+TGG | + | chr3.4:90495382-90495401 | MS.gene012897:CDS | 35.0% |
| ! | AATCTTCTAGAAAGAGTCGA+CGG | + | chr3.4:90492501-90492520 | MS.gene012897:intron | 35.0% |
| ! | ACGCGACATTTTACATAGTA+CGG | + | chr3.4:90492919-90492938 | MS.gene012897:intron | 35.0% |
| ! | ATGCTTCAAATTCTGGAAGA+TGG | + | chr3.4:90494963-90494982 | MS.gene012897:CDS | 35.0% |
| ! | GAACGTGTTACTCAAATCTT+GGG | + | chr3.4:90492279-90492298 | MS.gene012897:CDS | 35.0% |
| ! | GGAACAGAGCAAATTTTGTT+GGG | + | chr3.4:90491281-90491300 | MS.gene012897:CDS | 35.0% |
| ! | TGAACGTGTTACTCAAATCT+TGG | + | chr3.4:90492278-90492297 | MS.gene012897:CDS | 35.0% |
| ! | TGAGAACATAATACTAGCCT+GGG | - | chr3.4:90491899-90491918 | None:intergenic | 35.0% |
| ! | TGCTTCAAATTCTGGAAGAT+GGG | + | chr3.4:90494964-90494983 | MS.gene012897:CDS | 35.0% |
| !! | AATTGTTGTTGGTTTGGTTC+AGG | + | chr3.4:90492460-90492479 | MS.gene012897:intron | 35.0% |
| !! | AGAACTGTTGGTTCAGAAAA+TGG | - | chr3.4:90493957-90493976 | None:intergenic | 35.0% |
| !! | ATTGTTGTTGGTTTGGTTCA+GGG | + | chr3.4:90492461-90492480 | MS.gene012897:intron | 35.0% |
| !! | CAAATTTTCAAGAACACGTG+CGG | - | chr3.4:90491851-90491870 | None:intergenic | 35.0% |
| !! | GCTAAGGTTCTAAAGTCTAT+GGG | + | chr3.4:90491332-90491351 | MS.gene012897:CDS | 35.0% |
| !! | TGCTAAGGTTCTAAAGTCTA+TGG | + | chr3.4:90491331-90491350 | MS.gene012897:CDS | 35.0% |
| !! | TGTTGCTTTGATTGATCTGA+TGG | + | chr3.4:90491608-90491627 | MS.gene012897:intron | 35.0% |
| !!! | CCCTAGGATTTTGATTTTAG+AGG | - | chr3.4:90492222-90492241 | None:intergenic | 35.0% |
| AACCAAAGAGATTGAGCTCT+CGG | + | chr3.4:90495289-90495308 | MS.gene012897:CDS | 40.0% | |
| AAGATAATTGGAAGGGGTAG+TGG | + | chr3.4:90491389-90491408 | MS.gene012897:CDS | 40.0% | |
| AGAAGCAAGAGGACTTGAAA+AGG | + | chr3.4:90494033-90494052 | MS.gene012897:CDS | 40.0% | |
| AGAGCTACGGGATAAAGAAA+TGG | + | chr3.4:90494377-90494396 | MS.gene012897:CDS | 40.0% | |
| AGCAACAATCAAGGCATGTT+TGG | - | chr3.4:90491595-90491614 | None:intergenic | 40.0% | |
| AGCATCATGTTGAAGACATC+AGG | - | chr3.4:90494948-90494967 | None:intergenic | 40.0% | |
| AGCCTCATTCTGCATGATTT+AGG | + | chr3.4:90492652-90492671 | MS.gene012897:intron | 40.0% | |
| AGCTGATATAATGCTGAAGG+AGG | + | chr3.4:90495250-90495269 | MS.gene012897:CDS | 40.0% | |
| AGGAGCTGAAGCAATACTTT+AGG | + | chr3.4:90495156-90495175 | MS.gene012897:CDS | 40.0% | |
| ATAGACGAGACAAGAACTGT+TGG | - | chr3.4:90493969-90493988 | None:intergenic | 40.0% | |
| ATCACCATTTGCAATCCGTT+GGG | - | chr3.4:90492379-90492398 | None:intergenic | 40.0% | |
| ATTGTGCTCAATGGTAGTAG+TGG | + | chr3.4:90495491-90495510 | MS.gene012897:CDS | 40.0% | |
| CATGTTGAAGACATCAGGAT+GGG | - | chr3.4:90494943-90494962 | None:intergenic | 40.0% | |
| CCACAACACTAGATGAATAC+AGG | + | chr3.4:90493318-90493337 | MS.gene012897:CDS | 40.0% | |
| CCTGTATTCATCTAGTGTTG+TGG | - | chr3.4:90493321-90493340 | None:intergenic | 40.0% | |
| CGCACGTGTTCTTGAAAATT+TGG | + | chr3.4:90491849-90491868 | MS.gene012897:CDS | 40.0% | |
| CGCATTATAGCTCTTCTTAG+AGG | - | chr3.4:90495377-90495396 | None:intergenic | 40.0% | |
| CTGGTATTGCATGTTTAACC+CGG | + | chr3.4:90493612-90493631 | MS.gene012897:intron | 40.0% | |
| GAAAAGATGAAGCTGGCAAT+CGG | - | chr3.4:90494687-90494706 | None:intergenic | 40.0% | |
| GAACAGGTTATTCGAATGGT+TGG | + | chr3.4:90492002-90492021 | MS.gene012897:intron | 40.0% | |
| GATCTGAAGAAGCCATGATT+CGG | + | chr3.4:90494766-90494785 | MS.gene012897:CDS | 40.0% | |
| GCTTGACATGAGCGAATTTA+TGG | + | chr3.4:90494788-90494807 | MS.gene012897:CDS | 40.0% | |
| GGAAAATTGGATCCTGTTGT+GGG | + | chr3.4:90492240-90492259 | MS.gene012897:CDS | 40.0% | |
| GGAAATGTGATTGTGCTCAA+TGG | + | chr3.4:90495482-90495501 | MS.gene012897:CDS | 40.0% | |
| GTGTGCGTAAGCTTCATAAA+GGG | - | chr3.4:90492528-90492547 | None:intergenic | 40.0% | |
| GTTGCTGGAACTAAATATCG+AGG | + | chr3.4:90492701-90492720 | MS.gene012897:CDS | 40.0% | |
| TACATCATTCTGACAGACCT+AGG | - | chr3.4:90491008-90491027 | None:intergenic | 40.0% | |
| TATAGCTCTTCTTAGAGGTC+TGG | - | chr3.4:90495372-90495391 | None:intergenic | 40.0% | |
| TATTGTTGAGCTAATTGGGC+TGG | + | chr3.4:90493986-90494005 | MS.gene012897:intron | 40.0% | |
| TCATGTTGAAGACATCAGGA+TGG | - | chr3.4:90494944-90494963 | None:intergenic | 40.0% | |
| TCGGTATAACCAACATATCC+CGG | - | chr3.4:90494849-90494868 | None:intergenic | 40.0% | |
| TGACCTTGACTATGATGAGA+AGG | + | chr3.4:90495097-90495116 | MS.gene012897:CDS | 40.0% | |
| TGAGAGTTCCAAAACTCTCT+TGG | - | chr3.4:90491450-90491469 | None:intergenic | 40.0% | |
| TGTCCTTCTCATCATAGTCA+AGG | - | chr3.4:90495103-90495122 | None:intergenic | 40.0% | |
| TGTGTGCGTAAGCTTCATAA+AGG | - | chr3.4:90492529-90492548 | None:intergenic | 40.0% | |
| TTAGGCCAGAGTTCTTGAAT+AGG | + | chr3.4:90495174-90495193 | MS.gene012897:CDS | 40.0% | |
| TTGGACTTAAGAACCCTAAC+CGG | + | chr3.4:90494661-90494680 | MS.gene012897:CDS | 40.0% | |
| ! | AACAGGATCCAATTTTCCCT+AGG | - | chr3.4:90492238-90492257 | None:intergenic | 40.0% |
| ! | AAGGCTTGGTTATTGTTGTC+TGG | + | chr3.4:90493646-90493665 | MS.gene012897:intron | 40.0% |
| ! | ACATTGGCCTCATACTACTT+TGG | + | chr3.4:90494744-90494763 | MS.gene012897:CDS | 40.0% |
| ! | ATTGCCAGCTTCATCTTTTC+TGG | + | chr3.4:90494687-90494706 | MS.gene012897:CDS | 40.0% |
| ! | CGGAACAGAGCAAATTTTGT+TGG | + | chr3.4:90491280-90491299 | MS.gene012897:CDS | 40.0% |
| ! | GCTTGCTAGAGAGATTAAAG+AGG | + | chr3.4:90495427-90495446 | MS.gene012897:CDS | 40.0% |
| ! | GGATATGTTGGTTATACCGA+GGG | + | chr3.4:90494849-90494868 | MS.gene012897:CDS | 40.0% |
| ! | GTAGTATGAGGCCAATGTTT+TGG | - | chr3.4:90494742-90494761 | None:intergenic | 40.0% |
| ! | TTCAAATTCTGGAAGATGGG+AGG | + | chr3.4:90494967-90494986 | MS.gene012897:CDS | 40.0% |
| !! | AAAAAGATCCAGCTTTGGAG+AGG | + | chr3.4:90493351-90493370 | MS.gene012897:CDS | 40.0% |
| !! | AAAGTATTGCTTCAGCTCCT+CGG | - | chr3.4:90495156-90495175 | None:intergenic | 40.0% |
| !! | ACTTCGGTGACTTTGAGTTT+TGG | - | chr3.4:90493108-90493127 | None:intergenic | 40.0% |
| !! | AGTTATTATGCTGGCTCAAG+AGG | + | chr3.4:90491229-90491248 | MS.gene012897:CDS | 40.0% |
| !! | ATAGTGGATGCTGATTCTGA+TGG | + | chr3.4:90495461-90495480 | MS.gene012897:CDS | 40.0% |
| !! | CAAGAGCATCATCGGTATAA+CGG | - | chr3.4:90493472-90493491 | None:intergenic | 40.0% |
| !! | GTTATTCGAATGGTTGGTGA+GGG | + | chr3.4:90492008-90492027 | MS.gene012897:CDS | 40.0% |
| !! | TTGTTGGGTCTTATTGGTGA+AGG | + | chr3.4:90491296-90491315 | MS.gene012897:CDS | 40.0% |
| !!! | AGTTTTGGAACTCTCATTGG+AGG | + | chr3.4:90491454-90491473 | MS.gene012897:CDS | 40.0% |
| !!! | GAGAGTTTTGGAACTCTCAT+TGG | + | chr3.4:90491451-90491470 | MS.gene012897:CDS | 40.0% |
| AATAACCTGTTCCCCTCAAG+TGG | - | chr3.4:90491994-90492013 | None:intergenic | 45.0% | |
| AATTGGATCCTGTTGTGGGT+AGG | + | chr3.4:90492244-90492263 | MS.gene012897:CDS | 45.0% | |
| ACTGCTACAATGCGAATGTC+TGG | + | chr3.4:90491038-90491057 | MS.gene012897:CDS | 45.0% | |
| AGAGACTCGGGCAATGAATT+TGG | - | chr3.4:90495521-90495540 | None:intergenic | 45.0% | |
| AGAGAGATTTAGGGAGAGAG+TGG | + | chr3.4:90495316-90495335 | MS.gene012897:CDS | 45.0% | |
| AGAGGGTGACTCTGTTATAG+TGG | + | chr3.4:90495445-90495464 | MS.gene012897:CDS | 45.0% | |
| AGCAAGAGGACTTGAAAAGG+AGG | + | chr3.4:90494036-90494055 | MS.gene012897:CDS | 45.0% | |
| AGCAGTGTGATTGAGAAAGG+AGG | + | chr3.4:90495059-90495078 | MS.gene012897:CDS | 45.0% | |
| AGCCATGTTTGAGCGTTTCA+CGG | + | chr3.4:90491193-90491212 | MS.gene012897:CDS | 45.0% | |
| AGGGGAACAGGTTATTCGAA+TGG | + | chr3.4:90491998-90492017 | MS.gene012897:intron | 45.0% | |
| AGGTCTCTTCCATCTTGAGA+AGG | - | chr3.4:90494572-90494591 | None:intergenic | 45.0% | |
| AGTTCGACTTCAACATGCAC+AGG | + | chr3.4:90493914-90493933 | MS.gene012897:CDS | 45.0% | |
| ATCTGATCGCCTTCTCAAGA+TGG | + | chr3.4:90494560-90494579 | MS.gene012897:CDS | 45.0% | |
| CAAGGTCAAATCCTATGCGA+CGG | - | chr3.4:90495085-90495104 | None:intergenic | 45.0% | |
| CAATTTGACCAAGCTAGCAG+AGG | + | chr3.4:90492106-90492125 | MS.gene012897:CDS | 45.0% | |
| CACACAGTCTCCAAACTCAT+TGG | + | chr3.4:90494816-90494835 | MS.gene012897:CDS | 45.0% | |
| CAGGCAACTTACAAAACTGG+AGG | + | chr3.4:90495217-90495236 | MS.gene012897:CDS | 45.0% | |
| CAGTTACCTGAAGAAGCAAG+AGG | + | chr3.4:90494022-90494041 | MS.gene012897:intron | 45.0% | |
| CATCACCATTTGCAATCCGT+TGG | - | chr3.4:90492380-90492399 | None:intergenic | 45.0% | |
| CTCGGTGACAGAGAGATTTA+GGG | + | chr3.4:90495307-90495326 | MS.gene012897:CDS | 45.0% | |
| GAGGACTTGAAAAGGAGGTT+AGG | + | chr3.4:90494041-90494060 | MS.gene012897:CDS | 45.0% | |
| GATGAAGTGCACACTCTCAT+TGG | + | chr3.4:90492794-90492813 | MS.gene012897:CDS | 45.0% | |
| GATGTCCCTGAAACCATAGA+GGG | + | chr3.4:90492396-90492415 | MS.gene012897:CDS | 45.0% | |
| GCTTTCCCTCTATGGTTTCA+GGG | - | chr3.4:90492404-90492423 | None:intergenic | 45.0% | |
| GGAAAGACAGCTATTGCTGA+AGG | + | chr3.4:90492348-90492367 | MS.gene012897:CDS | 45.0% | |
| GGAAGCAGTGTGATTGAGAA+AGG | + | chr3.4:90495056-90495075 | MS.gene012897:CDS | 45.0% | |
| GGAGGTTAGGCAGATAGTTA+AGG | + | chr3.4:90494054-90494073 | MS.gene012897:CDS | 45.0% | |
| GGGAAAATTGGATCCTGTTG+TGG | + | chr3.4:90492239-90492258 | MS.gene012897:intron | 45.0% | |
| GGGAGGCTAACAGATAGTAA+GGG | + | chr3.4:90494984-90495003 | MS.gene012897:CDS | 45.0% | |
| GTATAACCAACATATCCCGG+AGG | - | chr3.4:90494846-90494865 | None:intergenic | 45.0% | |
| GTGCATGTTGAAGTCGAACT+CGG | - | chr3.4:90493914-90493933 | None:intergenic | 45.0% | |
| GTTGTGTTTAGTTGTGTGGC+TGG | - | chr3.4:90492556-90492575 | None:intergenic | 45.0% | |
| TACAACATATTGTTGCCGCC+TGG | + | chr3.4:90494502-90494521 | MS.gene012897:CDS | 45.0% | |
| TAGCAAGATGCCAACTTTGG+AGG | + | chr3.4:90492073-90492092 | MS.gene012897:CDS | 45.0% | |
| TCAAGTCCTCTTGCTTCTTC+AGG | - | chr3.4:90494031-90494050 | None:intergenic | 45.0% | |
| TCCAACTAATATTCGCACCC+AGG | + | chr3.4:90491879-90491898 | MS.gene012897:CDS | 45.0% | |
| TCCAGCCTATTCAAGAACTC+TGG | - | chr3.4:90495182-90495201 | None:intergenic | 45.0% | |
| TCTCGGTGACAGAGAGATTT+AGG | + | chr3.4:90495306-90495325 | MS.gene012897:CDS | 45.0% | |
| TCTTAAGTCCAACACGAGCT+CGG | - | chr3.4:90494653-90494672 | None:intergenic | 45.0% | |
| TCTTGCTAGAGGTGAACTAC+AGG | + | chr3.4:90492868-90492887 | MS.gene012897:CDS | 45.0% | |
| TGAAACCATAGAGGGAAAGC+AGG | + | chr3.4:90492404-90492423 | MS.gene012897:CDS | 45.0% | |
| TGATGTCCCTGAAACCATAG+AGG | + | chr3.4:90492395-90492414 | MS.gene012897:CDS | 45.0% | |
| TGCATGTTGAAGTCGAACTC+GGG | - | chr3.4:90493913-90493932 | None:intergenic | 45.0% | |
| TGCTTTCCCTCTATGGTTTC+AGG | - | chr3.4:90492405-90492424 | None:intergenic | 45.0% | |
| TGGGAGGCTAACAGATAGTA+AGG | + | chr3.4:90494983-90495002 | MS.gene012897:CDS | 45.0% | |
| TTGAAACCAGCTCTTGCTAG+AGG | + | chr3.4:90492857-90492876 | MS.gene012897:CDS | 45.0% | |
| ! | AAAGAGCAGAAAGCGCAGAA+AGG | - | chr3.4:90491690-90491709 | None:intergenic | 45.0% |
| ! | AATCAAAAGCTTGGTGACCG+AGG | + | chr3.4:90495136-90495155 | MS.gene012897:CDS | 45.0% |
| ! | ATGCCAACTTTGGAGGAGTA+TGG | + | chr3.4:90492080-90492099 | MS.gene012897:CDS | 45.0% |
| ! | ATGCGAATGTCTGGTTTCTC+TGG | + | chr3.4:90491047-90491066 | MS.gene012897:CDS | 45.0% |
| ! | CTCTGCTAGCTTGGTCAAAT+TGG | - | chr3.4:90492108-90492127 | None:intergenic | 45.0% |
| ! | GATATGGGTCTACTTGTTGC+TGG | + | chr3.4:90492686-90492705 | MS.gene012897:CDS | 45.0% |
| ! | GGGATATGTTGGTTATACCG+AGG | + | chr3.4:90494848-90494867 | MS.gene012897:CDS | 45.0% |
| ! | GGTTATTCGAATGGTTGGTG+AGG | + | chr3.4:90492007-90492026 | MS.gene012897:intron | 45.0% |
| ! | GTCTGAGTTGGCCAAAACAT+TGG | + | chr3.4:90494728-90494747 | MS.gene012897:CDS | 45.0% |
| ! | TATGTTGGTTATACCGAGGG+TGG | + | chr3.4:90494852-90494871 | MS.gene012897:CDS | 45.0% |
| ! | TCTAAGGTGCTCACTCAGAT+TGG | + | chr3.4:90491125-90491144 | MS.gene012897:CDS | 45.0% |
| ! | TCTGAATGGTCACTTTGGAC+TGG | + | chr3.4:90493186-90493205 | MS.gene012897:intron | 45.0% |
| !! | AAACTCATTGGTTCACCTCC+GGG | + | chr3.4:90494828-90494847 | MS.gene012897:CDS | 45.0% |
| !! | AGCAGCTACAAGAGCATCAT+CGG | - | chr3.4:90493480-90493499 | None:intergenic | 45.0% |
| !! | ATTGGTGAAGGCACTGGTAT+TGG | + | chr3.4:90491308-90491327 | MS.gene012897:CDS | 45.0% |
| !! | CAAACTCATTGGTTCACCTC+CGG | + | chr3.4:90494827-90494846 | MS.gene012897:CDS | 45.0% |
| !! | CGGTCACCAAGCTTTTGATT+CGG | - | chr3.4:90495136-90495155 | None:intergenic | 45.0% |
| !! | CTTTTGGGTCTTCTTCGAGA+GGG | + | chr3.4:90491814-90491833 | MS.gene012897:CDS | 45.0% |
| !! | GCTAATAATTAGCGGGCTGA+TGG | + | chr3.4:90494330-90494349 | MS.gene012897:intron | 45.0% |
| !! | TTCATCTTTTCTGGCCCTAC+TGG | + | chr3.4:90494696-90494715 | MS.gene012897:CDS | 45.0% |
| AATAGAGCAAGGGGTGGTAG+AGG | + | chr3.4:90491152-90491171 | MS.gene012897:CDS | 50.0% | |
| ACCAACCTGCTTTCCCTCTA+TGG | - | chr3.4:90492412-90492431 | None:intergenic | 50.0% | |
| ACCATAGAGGGAAAGCAGGT+TGG | + | chr3.4:90492408-90492427 | MS.gene012897:intron | 50.0% | |
| AGACCTAGGTCTTGATCTCG+CGG | - | chr3.4:90490994-90491013 | None:intergenic | 50.0% | |
| AGAGGTCTGGCACCATAACT+AGG | - | chr3.4:90495359-90495378 | None:intergenic | 50.0% | |
| AGCTGAAGGGGCAATTGATG+CGG | + | chr3.4:90492826-90492845 | MS.gene012897:CDS | 50.0% | |
| AGGGCCAGAAAAGATGAAGC+TGG | - | chr3.4:90494694-90494713 | None:intergenic | 50.0% | |
| AGTTACCTCCTCTGCTAGCT+TGG | - | chr3.4:90492117-90492136 | None:intergenic | 50.0% | |
| AGTTCACCTCTAGCAAGAGC+TGG | - | chr3.4:90492866-90492885 | None:intergenic | 50.0% | |
| ATAGCTGTCTTTCCGACACC+AGG | - | chr3.4:90492342-90492361 | None:intergenic | 50.0% | |
| ATCAACAGGGATACCAGTCC+AGG | - | chr3.4:90494523-90494542 | None:intergenic | 50.0% | |
| CACCGAGAGCTCAATCTCTT+TGG | - | chr3.4:90495294-90495313 | None:intergenic | 50.0% | |
| CATGTTTAACCCGGCGTAGT+GGG | + | chr3.4:90493621-90493640 | MS.gene012897:intron | 50.0% | |
| CCAGGTTCCCCAATAAGACA+AGG | - | chr3.4:90492324-90492343 | None:intergenic | 50.0% | |
| CGGAGGTGAACCAATGAGTT+TGG | - | chr3.4:90494829-90494848 | None:intergenic | 50.0% | |
| CTCAGTCAATTGACCACCCT+CGG | - | chr3.4:90494868-90494887 | None:intergenic | 50.0% | |
| CTCCGTGAAACGCTCAAACA+TGG | - | chr3.4:90491198-90491217 | None:intergenic | 50.0% | |
| CTCGAAGAAGACCCAAAAGC+AGG | - | chr3.4:90491813-90491832 | None:intergenic | 50.0% | |
| CTGAATAGGCTGGAGAGCTA+CGG | + | chr3.4:90494364-90494383 | MS.gene012897:intron | 50.0% | |
| CTTATTGGGGAACCTGGTGT+CGG | + | chr3.4:90492327-90492346 | MS.gene012897:CDS | 50.0% | |
| GACAATGTTGGGGCTACTGT+TGG | + | chr3.4:90492035-90492054 | MS.gene012897:CDS | 50.0% | |
| GCCAGAGTTCTTGAATAGGC+TGG | + | chr3.4:90495178-90495197 | MS.gene012897:CDS | 50.0% | |
| GCCTGGGTGCGAATATTAGT+TGG | - | chr3.4:90491883-90491902 | None:intergenic | 50.0% | |
| GCTCATGTCAAGCCGAATCA+TGG | - | chr3.4:90494781-90494800 | None:intergenic | 50.0% | |
| GGTACTAATAGAGCAAGGGG+TGG | + | chr3.4:90491146-90491165 | MS.gene012897:CDS | 50.0% | |
| GTGCCATACTCCTCCAAAGT+TGG | - | chr3.4:90492086-90492105 | None:intergenic | 50.0% | |
| TAACCTGAAAGACTCTCGCG+TGG | + | chr3.4:90491358-90491377 | MS.gene012897:CDS | 50.0% | |
| TCCAAAACTCTCTTGGCACG+CGG | - | chr3.4:90491443-90491462 | None:intergenic | 50.0% | |
| TGAATAGGCTGGAGAGCTAC+GGG | + | chr3.4:90494365-90494384 | MS.gene012897:intron | 50.0% | |
| TGGAATCTCCTCTCCAAAGC+TGG | - | chr3.4:90493362-90493381 | None:intergenic | 50.0% | |
| TGTGTTTGCGCTCCACTTGA+GGG | + | chr3.4:90491979-90491998 | MS.gene012897:intron | 50.0% | |
| TTTGACCAAGCTAGCAGAGG+AGG | + | chr3.4:90492109-90492128 | MS.gene012897:CDS | 50.0% | |
| ! | CATCGGTATAACGGAGCTTG+TGG | - | chr3.4:90493463-90493482 | None:intergenic | 50.0% |
| ! | CCTTGTCTTATTGGGGAACC+TGG | + | chr3.4:90492321-90492340 | MS.gene012897:CDS | 50.0% |
| ! | CGGCTGGGTCACAATTTTGT+CGG | + | chr3.4:90491260-90491279 | MS.gene012897:CDS | 50.0% |
| ! | GTTTCACTCACAGTTGGCTC+TGG | - | chr3.4:90493398-90493417 | None:intergenic | 50.0% |
| !! | AGGCACTGGTATTGGTGCTA+AGG | + | chr3.4:90491316-90491335 | MS.gene012897:CDS | 50.0% |
| !! | GCGACTTTTGGAAGACAGCA+TGG | + | chr3.4:90495394-90495413 | MS.gene012897:CDS | 50.0% |
| !! | GCTTTTGGGTCTTCTTCGAG+AGG | + | chr3.4:90491813-90491832 | MS.gene012897:CDS | 50.0% |
| !! | GGATCTGAGCACCTGCTTTT+GGG | + | chr3.4:90491799-90491818 | MS.gene012897:CDS | 50.0% |
| !! | GGTCTTATTGGTGAAGGCAC+TGG | + | chr3.4:90491302-90491321 | MS.gene012897:CDS | 50.0% |
| !! | GTGAGGGTGCTGACAATGTT+GGG | + | chr3.4:90492024-90492043 | MS.gene012897:CDS | 50.0% |
| !! | GTTGGCTCTGGCACTTTAAC+TGG | - | chr3.4:90493386-90493405 | None:intergenic | 50.0% |
| !! | TGAGGGTGCTGACAATGTTG+GGG | + | chr3.4:90492025-90492044 | MS.gene012897:CDS | 50.0% |
| !! | TTTTCTGGCCCTACTGGTGT+GGG | + | chr3.4:90494702-90494721 | MS.gene012897:CDS | 50.0% |
| AACAGGGATACCAGTCCAGG+CGG | - | chr3.4:90494520-90494539 | None:intergenic | 55.0% | |
| AGATGAAGCTGGCAATCGGC+CGG | - | chr3.4:90494683-90494702 | None:intergenic | 55.0% | |
| AGGGAGAGAGTGGTTGACGA+AGG | + | chr3.4:90495326-90495345 | MS.gene012897:CDS | 55.0% | |
| ATTGGAGCAGGAGCAGCTGA+AGG | + | chr3.4:90492812-90492831 | MS.gene012897:CDS | 55.0% | |
| CAGACTTCCCCACACCAGTA+GGG | - | chr3.4:90494713-90494732 | None:intergenic | 55.0% | |
| CATATTGTTGCCGCCTGGAC+TGG | + | chr3.4:90494507-90494526 | MS.gene012897:CDS | 55.0% | |
| CGAGGGTGGTCAATTGACTG+AGG | + | chr3.4:90494866-90494885 | MS.gene012897:CDS | 55.0% | |
| CTCTTGGCACGCGGAGTAAA+CGG | - | chr3.4:90491434-90491453 | None:intergenic | 55.0% | |
| CTTCCACGCGAGAGTCTTTC+AGG | - | chr3.4:90491364-90491383 | None:intergenic | 55.0% | |
| GAGAGTGAGGCAGGAGATGT+AGG | + | chr3.4:90494456-90494475 | MS.gene012897:CDS | 55.0% | |
| GATCCGCGAGATCAAGACCT+AGG | + | chr3.4:90490988-90491007 | MS.gene012897:CDS | 55.0% | |
| GATGAGCAAGGCAGAGAGTG+AGG | + | chr3.4:90494443-90494462 | MS.gene012897:CDS | 55.0% | |
| GCACAGTCGATTAACGTCCC+CGG | + | chr3.4:90490927-90490946 | MS.gene012897:CDS | 55.0% | |
| GCATGTTTAACCCGGCGTAG+TGG | + | chr3.4:90493620-90493639 | MS.gene012897:intron | 55.0% | |
| GCTCTGGCACTTTAACTGGC+TGG | - | chr3.4:90493382-90493401 | None:intergenic | 55.0% | |
| GGTCTTCTTCGAGAGGGTGA+GGG | + | chr3.4:90491820-90491839 | MS.gene012897:CDS | 55.0% | |
| GGTTCACCTCCGGGATATGT+TGG | + | chr3.4:90494837-90494856 | MS.gene012897:CDS | 55.0% | |
| GTGCACACTCTCATTGGAGC+AGG | + | chr3.4:90492800-90492819 | MS.gene012897:CDS | 55.0% | |
| GTGTGTTTGCGCTCCACTTG+AGG | + | chr3.4:90491978-90491997 | MS.gene012897:intron | 55.0% | |
| GTGTTTGCGCTCCACTTGAG+GGG | + | chr3.4:90491980-90491999 | MS.gene012897:intron | 55.0% | |
| TAAGTCCAACACGAGCTCGG+CGG | - | chr3.4:90494650-90494669 | None:intergenic | 55.0% | |
| TCAGACTTCCCCACACCAGT+AGG | - | chr3.4:90494714-90494733 | None:intergenic | 55.0% | |
| TGGCTCAAGAGGAAGCTAGG+CGG | + | chr3.4:90491240-90491259 | MS.gene012897:CDS | 55.0% | |
| TGGTGTGGGGAAGTCTGAGT+TGG | + | chr3.4:90494716-90494735 | MS.gene012897:CDS | 55.0% | |
| TTGCTGAAGGTCTCGCCCAA+CGG | + | chr3.4:90492361-90492380 | MS.gene012897:CDS | 55.0% | |
| TTGGAGCAGGAGCAGCTGAA+GGG | + | chr3.4:90492813-90492832 | MS.gene012897:CDS | 55.0% | |
| TTGGAGGAAGCTCGCCAACT+TGG | + | chr3.4:90491470-90491489 | MS.gene012897:CDS | 55.0% | |
| ! | AAGCCTTTTCCCACTACGCC+GGG | - | chr3.4:90493633-90493652 | None:intergenic | 55.0% |
| ! | AGCAGAAAGCGCAGAAAGGC+GGG | - | chr3.4:90491686-90491705 | None:intergenic | 55.0% |
| ! | CAAGCCTTTTCCCACTACGC+CGG | - | chr3.4:90493634-90493653 | None:intergenic | 55.0% |
| ! | CGGATCTGAGCACCTGCTTT+TGG | + | chr3.4:90491798-90491817 | MS.gene012897:CDS | 55.0% |
| ! | GAGCAGAAAGCGCAGAAAGG+CGG | - | chr3.4:90491687-90491706 | None:intergenic | 55.0% |
| ! | TAACCCGGCGTAGTGGGAAA+AGG | + | chr3.4:90493627-90493646 | MS.gene012897:intron | 55.0% |
| ! | TCCGCGTGCCAAGAGAGTTT+TGG | + | chr3.4:90491439-90491458 | MS.gene012897:CDS | 55.0% |
| ! | TTTCTGGCCCTACTGGTGTG+GGG | + | chr3.4:90494703-90494722 | MS.gene012897:CDS | 55.0% |
| !! | CTCGCCCAACGGATTGCAAA+TGG | + | chr3.4:90492372-90492391 | MS.gene012897:CDS | 55.0% |
| !! | CTTTTCTGGCCCTACTGGTG+TGG | + | chr3.4:90494701-90494720 | MS.gene012897:CDS | 55.0% |
| !! | GGTGAGGGTGCTGACAATGT+TGG | + | chr3.4:90492023-90492042 | MS.gene012897:CDS | 55.0% |
| !! | TGCTGGCTCAAGAGGAAGCT+AGG | + | chr3.4:90491237-90491256 | MS.gene012897:CDS | 55.0% |
| AAGCTGGCAATCGGCCGGTT+AGG | - | chr3.4:90494678-90494697 | None:intergenic | 60.0% | |
| AGCAAGGCAGAGAGTGAGGC+AGG | + | chr3.4:90494447-90494466 | MS.gene012897:CDS | 60.0% | |
| AGCTGGCAATCGGCCGGTTA+GGG | - | chr3.4:90494677-90494696 | None:intergenic | 60.0% | |
| CAAGAGGAAGCTAGGCGGCT+GGG | + | chr3.4:90491245-90491264 | MS.gene012897:CDS | 60.0% | |
| CATGCCTTCGACCAGCCACT+AGG | - | chr3.4:90490953-90490972 | None:intergenic | 60.0% | |
| GAGAAAGGAGGCCGTCGCAT+AGG | + | chr3.4:90495071-90495090 | MS.gene012897:CDS | 60.0% | |
| GATTAACGTCCCCGGCCTAG+TGG | + | chr3.4:90490935-90490954 | MS.gene012897:CDS | 60.0% | |
| GGGTCTTCTTCGAGAGGGTG+AGG | + | chr3.4:90491819-90491838 | MS.gene012897:CDS | 60.0% | |
| TCAAGAGGAAGCTAGGCGGC+TGG | + | chr3.4:90491244-90491263 | MS.gene012897:CDS | 60.0% | |
| TCGGCGGATAGCACGGCTAA+TGG | - | chr3.4:90494634-90494653 | None:intergenic | 60.0% | |
| TCTTCGAGAGGGTGAGGGTG+TGG | + | chr3.4:90491825-90491844 | MS.gene012897:CDS | 60.0% | |
| TGGAGCAGGAGCAGCTGAAG+GGG | + | chr3.4:90492814-90492833 | MS.gene012897:CDS | 60.0% | |
| TGTGGCTGCCTACCCACAAC+AGG | - | chr3.4:90492255-90492274 | None:intergenic | 60.0% | |
| ! | CGGCGTAGTGGGAAAAGGCT+TGG | + | chr3.4:90493632-90493651 | MS.gene012897:intron | 60.0% |
| !! | GTTGGGGCTACTGTTGGCTC+TGG | + | chr3.4:90492041-90492060 | MS.gene012897:CDS | 60.0% |
| CACGAGCTCGGCGGATAGCA+CGG | - | chr3.4:90494641-90494660 | None:intergenic | 65.0% | |
| CCTTCGACCAGCCACTAGGC+CGG | - | chr3.4:90490949-90490968 | None:intergenic | 65.0% | |
| CTTCGACCAGCCACTAGGCC+GGG | - | chr3.4:90490948-90490967 | None:intergenic | 65.0% | |
| GCGCTCCACTTGAGGGGAAC+AGG | + | chr3.4:90491986-90492005 | MS.gene012897:intron | 65.0% | |
| GCTATCCGCCGAGCTCGTGT+TGG | + | chr3.4:90494642-90494661 | MS.gene012897:CDS | 65.0% | |
| TTCGACCAGCCACTAGGCCG+GGG | - | chr3.4:90490947-90490966 | None:intergenic | 65.0% | |
| AACGTCCCCGGCCTAGTGGC+TGG | + | chr3.4:90490939-90490958 | MS.gene012897:CDS | 70.0% | |
| ! | CCGGCCTAGTGGCTGGTCGA+AGG | + | chr3.4:90490946-90490965 | MS.gene012897:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90490912 | 90495550 | 90490912 | ID=MS.gene012897 |
| chr3.4 | mRNA | 90490912 | 90495550 | 90490912 | ID=MS.gene012897.t1;Parent=MS.gene012897 |
| chr3.4 | exon | 90490912 | 90491491 | 90490912 | ID=MS.gene012897.t1.exon1;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90490912 | 90491491 | 90490912 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| chr3.4 | exon | 90491785 | 90491900 | 90491785 | ID=MS.gene012897.t1.exon2;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90491785 | 90491900 | 90491785 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| chr3.4 | exon | 90492008 | 90492130 | 90492008 | ID=MS.gene012897.t1.exon3;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90492008 | 90492130 | 90492008 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| chr3.4 | exon | 90492240 | 90492425 | 90492240 | ID=MS.gene012897.t1.exon4;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90492240 | 90492425 | 90492240 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| chr3.4 | exon | 90492674 | 90492889 | 90492674 | ID=MS.gene012897.t1.exon5;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90492674 | 90492889 | 90492674 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| chr3.4 | exon | 90493308 | 90493525 | 90493308 | ID=MS.gene012897.t1.exon6;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90493308 | 90493525 | 90493308 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| chr3.4 | exon | 90493860 | 90493935 | 90493860 | ID=MS.gene012897.t1.exon7;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90493860 | 90493935 | 90493860 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| chr3.4 | exon | 90494025 | 90494114 | 90494025 | ID=MS.gene012897.t1.exon8;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90494025 | 90494114 | 90494025 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| chr3.4 | exon | 90494372 | 90495550 | 90494372 | ID=MS.gene012897.t1.exon9;Parent=MS.gene012897.t1 |
| chr3.4 | CDS | 90494372 | 90495550 | 90494372 | ID=cds.MS.gene012897.t1;Parent=MS.gene012897.t1 |
| Gene Sequence |
| Protein sequence |
