Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41103.t1 | XP_013467919.1 | 100 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 3.00E-82 | 314.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41103.t1 | Q9SVD7 | 92.5 | 146 | 11 | 0 | 1 | 146 | 1 | 146 | 2.6e-79 | 295.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41103.t1 | B7FNB3 | 100.0 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 2.1e-82 | 314.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene41103 | -0.826981 | 2.01E-54 | -1.69E-46 |
| MS.gene049850 | MS.gene41103 | -0.801413 | 9.11E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene41103 | -0.817684 | 2.90E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene41103 | 0.80879 | 2.60E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene41103 | -0.804871 | 1.75E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene41103 | -0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene41103 | -0.815534 | 8.80E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene41103 | -0.80361 | 3.21E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene41103 | 0.815214 | 1.04E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene41103 | 0.814249 | 1.70E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene41103 | -0.827312 | 1.68E-54 | -1.69E-46 |
| MS.gene052673 | MS.gene41103 | 0.824718 | 6.94E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene41103 | -0.835132 | 2.00E-56 | -1.69E-46 |
| MS.gene052896 | MS.gene41103 | -0.813775 | 2.16E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene41103 | -0.87232 | 3.48E-67 | -1.69E-46 |
| MS.gene053894 | MS.gene41103 | -0.806737 | 7.11E-50 | -1.69E-46 |
| MS.gene054994 | MS.gene41103 | -0.804808 | 1.81E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene41103 | -0.808729 | 2.68E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene41103 | -0.816339 | 5.82E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene41103 | -0.80086 | 1.18E-48 | -1.69E-46 |
| MS.gene058548 | MS.gene41103 | -0.807037 | 6.15E-50 | -1.69E-46 |
| MS.gene058549 | MS.gene41103 | -0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene41103 | -0.834116 | 3.61E-56 | -1.69E-46 |
| MS.gene05954 | MS.gene41103 | -0.814197 | 1.74E-51 | -1.69E-46 |
| MS.gene05979 | MS.gene41103 | -0.838826 | 2.28E-57 | -1.69E-46 |
| MS.gene059842 | MS.gene41103 | -0.802445 | 5.59E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene41103 | 0.856162 | 3.88E-62 | -1.69E-46 |
| MS.gene060322 | MS.gene41103 | -0.807477 | 4.96E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene41103 | -0.804 | 2.66E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene41103 | 0.837106 | 6.32E-57 | -1.69E-46 |
| MS.gene060802 | MS.gene41103 | -0.815709 | 8.05E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene41103 | -0.835937 | 1.25E-56 | -1.69E-46 |
| MS.gene061040 | MS.gene41103 | 0.811971 | 5.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29973 | MS.gene41103 | PPI |
| MS.gene41103 | MS.gene020503 | PPI |
| MS.gene41103 | MS.gene015674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41103.t1 | MTR_1g058100 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 1.11e-109 | 308 |
| MS.gene41103.t1 | MTR_1g058100 | 98.649 | 148 | 0 | 1 | 1 | 146 | 1 | 148 | 6.82e-108 | 303 |
| MS.gene41103.t1 | MTR_1g058100 | 87.671 | 146 | 0 | 1 | 1 | 146 | 1 | 128 | 3.64e-90 | 258 |
| MS.gene41103.t1 | MTR_8g105010 | 80.142 | 141 | 28 | 0 | 3 | 143 | 1 | 141 | 5.09e-84 | 243 |
| MS.gene41103.t1 | MTR_8g105010 | 80.000 | 140 | 28 | 0 | 3 | 142 | 1 | 140 | 6.86e-83 | 241 |
| MS.gene41103.t1 | MTR_1g058100 | 99.020 | 102 | 1 | 0 | 1 | 102 | 1 | 102 | 6.96e-73 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41103.t1 | AT3G52560 | 92.466 | 146 | 11 | 0 | 1 | 146 | 1 | 146 | 2.04e-102 | 289 |
| MS.gene41103.t1 | AT2G36060 | 93.151 | 146 | 9 | 1 | 1 | 146 | 1 | 145 | 6.19e-102 | 288 |
| MS.gene41103.t1 | AT3G52560 | 91.837 | 147 | 11 | 1 | 1 | 146 | 1 | 147 | 1.04e-100 | 285 |
| MS.gene41103.t1 | AT2G36060 | 92.517 | 147 | 9 | 2 | 1 | 146 | 1 | 146 | 3.26e-100 | 284 |
| MS.gene41103.t1 | AT2G36060 | 92.466 | 146 | 9 | 2 | 1 | 146 | 1 | 144 | 1.80e-99 | 282 |
| MS.gene41103.t1 | AT3G52560 | 82.317 | 164 | 11 | 1 | 1 | 146 | 1 | 164 | 3.61e-98 | 279 |
| MS.gene41103.t1 | AT1G23260 | 75.177 | 141 | 35 | 0 | 3 | 143 | 1 | 141 | 6.55e-80 | 233 |
| MS.gene41103.t1 | AT1G70660 | 73.239 | 142 | 38 | 0 | 3 | 144 | 1 | 142 | 2.71e-78 | 228 |
| MS.gene41103.t1 | AT1G70660 | 73.239 | 142 | 38 | 0 | 3 | 144 | 1 | 142 | 4.98e-78 | 228 |
| MS.gene41103.t1 | AT3G52560 | 90.000 | 110 | 10 | 1 | 38 | 146 | 1 | 110 | 2.16e-73 | 215 |
| MS.gene41103.t1 | AT1G70650 | 73.529 | 136 | 36 | 0 | 8 | 143 | 442 | 577 | 3.88e-71 | 224 |
| MS.gene41103.t1 | AT1G23260 | 72.642 | 106 | 29 | 0 | 38 | 143 | 1 | 106 | 1.19e-57 | 176 |
Find 46 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCCATTTCTTTCTTCAGC+TGG | 0.199609 | 1.3:+42653475 | None:intergenic |
| CAGGTTGAACCAAAGAAATT+TGG | 0.239713 | 1.3:-42653546 | MS.gene41103:CDS |
| AATTTGGGCTTCTTGCAAAT+TGG | 0.294147 | 1.3:-42653530 | MS.gene41103:CDS |
| GCAAGAAGCCCAAATTTCTT+TGG | 0.297912 | 1.3:+42653537 | None:intergenic |
| TGCTAAAAGTAAGTTCCTTC+TGG | 0.317643 | 1.3:+42653423 | None:intergenic |
| TCCAAGGAACTTCAGATTGC+TGG | 0.330124 | 1.3:-42654618 | MS.gene41103:CDS |
| TCTTGGACTGGCACCATCAT+TGG | 0.337902 | 1.3:-42654512 | MS.gene41103:CDS |
| CTGATACCACGCCAGTTTCA+TGG | 0.343773 | 1.3:+42653730 | None:intergenic |
| CTGGAGGCTGGACAAGCTTC+CGG | 0.358439 | 1.3:+42653442 | None:intergenic |
| AGGTTGAACCAAAGAAATTT+GGG | 0.360917 | 1.3:-42653545 | MS.gene41103:CDS |
| GAGCTTGAACGAGGTGAAAA+AGG | 0.363928 | 1.3:-42654593 | MS.gene41103:CDS |
| CAGAGAAATACTTACATTAT+GGG | 0.376890 | 1.3:+42654487 | None:intergenic |
| TGCCATTTCTTTCTTCAGCT+GGG | 0.392353 | 1.3:+42653476 | None:intergenic |
| ATGACATTTACATGCGCTCT+TGG | 0.418963 | 1.3:-42654529 | MS.gene41103:CDS |
| AAATGGCAGCCCCTCATAAC+CGG | 0.419954 | 1.3:-42653461 | MS.gene41103:CDS |
| TCCATGACGCTTGGCTCAGC+CGG | 0.429765 | 1.3:-42655807 | MS.gene41103:CDS |
| ATTTACATGCGCTCTTGGAC+TGG | 0.438813 | 1.3:-42654524 | MS.gene41103:CDS |
| TGGACAAGCTTCCGGTTATG+AGG | 0.443651 | 1.3:+42653450 | None:intergenic |
| AGTAAGTTCCTTCTGGAGGC+TGG | 0.451073 | 1.3:+42653430 | None:intergenic |
| TCCAGCAATCTGAAGTTCCT+TGG | 0.453074 | 1.3:+42654617 | None:intergenic |
| CAGAAAAGCCGCCAAGTGTT+CGG | 0.455334 | 1.3:-42653785 | MS.gene41103:CDS |
| ACTTGTGTTAACCATGAAAC+TGG | 0.470899 | 1.3:-42653741 | MS.gene41103:CDS |
| AGAGAAATACTTACATTATG+GGG | 0.501433 | 1.3:+42654488 | None:intergenic |
| CTAACCGACGACACTGGATC+CGG | 0.502436 | 1.3:+42655788 | None:intergenic |
| CGTGAATGAAACCGAACACT+TGG | 0.519764 | 1.3:+42653774 | None:intergenic |
| GGACAAGCTTCCGGTTATGA+GGG | 0.527492 | 1.3:+42653451 | None:intergenic |
| GAATGAAACCGAACACTTGG+CGG | 0.532883 | 1.3:+42653777 | None:intergenic |
| TCCGGCTGAGCCAAGCGTCA+TGG | 0.534232 | 1.3:+42655806 | None:intergenic |
| CAAAATCCATCCATGACGCT+TGG | 0.537360 | 1.3:-42655816 | None:intergenic |
| GACCCAGCTGAAGAAAGAAA+TGG | 0.541436 | 1.3:-42653478 | MS.gene41103:CDS |
| TGGTAACTAACCGACGACAC+TGG | 0.573621 | 1.3:+42655782 | None:intergenic |
| TACTTTCAGACTGTACATGA+AGG | 0.578155 | 1.3:-42653849 | MS.gene41103:intron |
| GTTAGCTATGGAATGGATGA+TGG | 0.588764 | 1.3:-42654554 | MS.gene41103:CDS |
| GGTGATGGCACTGTTAGCTA+TGG | 0.599683 | 1.3:-42654566 | MS.gene41103:CDS |
| TGCGCTTCAATGCAGTTCCA+AGG | 0.600751 | 1.3:-42654634 | MS.gene41103:intron |
| AAGCTTGTCCAGCCTCCAGA+AGG | 0.603455 | 1.3:-42653438 | MS.gene41103:CDS |
| AAGGAACTTCAGATTGCTGG+AGG | 0.606974 | 1.3:-42654615 | MS.gene41103:CDS |
| GACAAGCTTCCGGTTATGAG+GGG | 0.622492 | 1.3:+42653452 | None:intergenic |
| TCAGCCGGATCCAGTGTCGT+CGG | 0.640126 | 1.3:-42655792 | MS.gene41103:intron |
| TGGCACTGTTAGCTATGGAA+TGG | 0.640972 | 1.3:-42654561 | MS.gene41103:CDS |
| GAGAAATACTTACATTATGG+GGG | 0.651874 | 1.3:+42654489 | None:intergenic |
| TTGCTGGAGGAGCTTGAACG+AGG | 0.667991 | 1.3:-42654602 | MS.gene41103:CDS |
| TAAAAGTAAGTTCCTTCTGG+AGG | 0.670760 | 1.3:+42653426 | None:intergenic |
| TTGGCAAAGAGAGTACAGCA+TGG | 0.708361 | 1.3:-42653511 | MS.gene41103:CDS |
| TGTTAACCATGAAACTGGCG+TGG | 0.731270 | 1.3:-42653736 | MS.gene41103:intron |
| GCAAAGAGAGTACAGCATGG+AGG | 0.733074 | 1.3:-42653508 | MS.gene41103:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAGAAATATGAAATAT+TGG | - | chr1.3:42655240-42655259 | MS.gene41103:intron | 15.0% |
| !! | TAAAAAGAAAAATGGTAAAA+TGG | - | chr1.3:42654124-42654143 | MS.gene41103:intron | 15.0% |
| !! | TTTAAAGAAATAGAAATCAA+TGG | - | chr1.3:42653955-42653974 | MS.gene41103:intron | 15.0% |
| !!! | ATGTAATTGTTGTTAATTTT+GGG | - | chr1.3:42653622-42653641 | MS.gene41103:intron | 15.0% |
| !!! | TATGTAATTGTTGTTAATTT+TGG | - | chr1.3:42653621-42653640 | MS.gene41103:intron | 15.0% |
| !!! | TGATACTTTAAAAAGAAAAA+TGG | - | chr1.3:42654116-42654135 | MS.gene41103:intron | 15.0% |
| !! | AATCAAGATTTATATGAAAC+AGG | - | chr1.3:42655664-42655683 | MS.gene41103:intron | 20.0% |
| !! | CTGTAATTGAATTATAATTC+TGG | - | chr1.3:42654180-42654199 | MS.gene41103:intron | 20.0% |
| !!! | TTTTGTTTTTTTTTTACCGA+TGG | - | chr1.3:42653652-42653671 | MS.gene41103:intron | 20.0% |
| ! | AAAAATGAAAACGACGAAAA+CGG | + | chr1.3:42653486-42653505 | None:intergenic | 25.0% |
| ! | AAAGAAAAATGGTAAAATGG+TGG | - | chr1.3:42654127-42654146 | MS.gene41103:intron | 25.0% |
| ! | AAGAAAAATGGTAAAATGGT+GGG | - | chr1.3:42654128-42654147 | MS.gene41103:intron | 25.0% |
| ! | ACAGAGAAATACTTACATTA+TGG | + | chr1.3:42654746-42654765 | None:intergenic | 25.0% |
| ! | AGAGAAATACTTACATTATG+GGG | + | chr1.3:42654744-42654763 | None:intergenic | 25.0% |
| ! | ATATACTACAGATTTAAGCA+TGG | + | chr1.3:42654514-42654533 | None:intergenic | 25.0% |
| ! | ATATGAAATATTGGTGTATC+TGG | - | chr1.3:42655249-42655268 | MS.gene41103:intron | 25.0% |
| ! | CAGAGAAATACTTACATTAT+GGG | + | chr1.3:42654745-42654764 | None:intergenic | 25.0% |
| ! | GATATGTACAAAATATTAGC+CGG | + | chr1.3:42654218-42654237 | None:intergenic | 25.0% |
| ! | TATACTACAGATTTAAGCAT+GGG | + | chr1.3:42654513-42654532 | None:intergenic | 25.0% |
| !! | AAAACTACATCGATGATTTT+AGG | + | chr1.3:42653590-42653609 | None:intergenic | 25.0% |
| !! | ATTGAAATGTTCGATCATTT+TGG | - | chr1.3:42653782-42653801 | MS.gene41103:CDS | 25.0% |
| !!! | TAAACTGGTTCTATCAAATT+AGG | + | chr1.3:42654860-42654879 | None:intergenic | 25.0% |
| !!! | TTTTTAGTAGTTTCTTGTTG+AGG | - | chr1.3:42653864-42653883 | MS.gene41103:intron | 25.0% |
| !!! | TTTTTTTACCGATGGAATTT+TGG | - | chr1.3:42653660-42653679 | MS.gene41103:intron | 25.0% |
| AGGTTGAACCAAAGAAATTT+GGG | - | chr1.3:42655684-42655703 | MS.gene41103:intron | 30.0% | |
| ATATTACGAACACCTAACAA+TGG | + | chr1.3:42654782-42654801 | None:intergenic | 30.0% | |
| ATTACAGAAAACTTGCACAA+AGG | + | chr1.3:42654167-42654186 | None:intergenic | 30.0% | |
| CATGAACACTTCTTACTTAT+TGG | - | chr1.3:42655142-42655161 | MS.gene41103:intron | 30.0% | |
| GAGAAATACTTACATTATGG+GGG | + | chr1.3:42654743-42654762 | None:intergenic | 30.0% | |
| GATTACATCTCTGATAACAA+TGG | + | chr1.3:42655648-42655667 | None:intergenic | 30.0% | |
| TGATGTCTTGTGAATGTAAA+GGG | - | chr1.3:42654281-42654300 | MS.gene41103:intron | 30.0% | |
| TTGATGTCTTGTGAATGTAA+AGG | - | chr1.3:42654280-42654299 | MS.gene41103:intron | 30.0% | |
| TTTGATAGAACCAGTTTATG+TGG | - | chr1.3:42654862-42654881 | MS.gene41103:intron | 30.0% | |
| ! | CGCATAAACTACAATTTTCA+AGG | + | chr1.3:42654953-42654972 | None:intergenic | 30.0% |
| !!! | ATTCTGGTTTTTCTTGTTTC+CGG | - | chr1.3:42654196-42654215 | MS.gene41103:intron | 30.0% |
| AAATCCTAAAACTCAAGGAC+CGG | + | chr1.3:42654402-42654421 | None:intergenic | 35.0% | |
| AATTTGGGCTTCTTGCAAAT+TGG | - | chr1.3:42655699-42655718 | MS.gene41103:intron | 35.0% | |
| ACTTGTGTTAACCATGAAAC+TGG | - | chr1.3:42655488-42655507 | MS.gene41103:intron | 35.0% | |
| ATGCGAAATCCTAAAACTCA+AGG | + | chr1.3:42654407-42654426 | None:intergenic | 35.0% | |
| CAAGAACTCAAAAAACATGC+CGG | + | chr1.3:42654987-42655006 | None:intergenic | 35.0% | |
| CATATCATGTGTTTATCCTG+AGG | - | chr1.3:42654232-42654251 | MS.gene41103:intron | 35.0% | |
| CGTGGTTAAAATATGGAGAA+AGG | - | chr1.3:42654431-42654450 | MS.gene41103:intron | 35.0% | |
| TAAAAGTAAGTTCCTTCTGG+AGG | + | chr1.3:42655806-42655825 | None:intergenic | 35.0% | |
| TACTTTCAGACTGTACATGA+AGG | - | chr1.3:42655380-42655399 | MS.gene41103:intron | 35.0% | |
| TATCCAACTTCCACATAAAC+TGG | + | chr1.3:42654875-42654894 | None:intergenic | 35.0% | |
| TTTCAAATATGTACTGCCTC+AGG | + | chr1.3:42654251-42654270 | None:intergenic | 35.0% | |
| ! | CAGGTTGAACCAAAGAAATT+TGG | - | chr1.3:42655683-42655702 | MS.gene41103:intron | 35.0% |
| ! | CTCTGATAACAATGGATTCA+AGG | + | chr1.3:42655640-42655659 | None:intergenic | 35.0% |
| ! | GATGATGATATGAAAGCATG+TGG | + | chr1.3:42655534-42655553 | None:intergenic | 35.0% |
| ! | GTATCTGGAATCTGAAAGTT+CGG | - | chr1.3:42655264-42655283 | MS.gene41103:intron | 35.0% |
| ! | TCATTTTGTGCGTACTTAAC+AGG | - | chr1.3:42655321-42655340 | MS.gene41103:intron | 35.0% |
| ! | TTACCGATGGAATTTTGGAT+CGG | - | chr1.3:42653665-42653684 | MS.gene41103:intron | 35.0% |
| ! | TTCGAGCTGTGAATTTTGTT+CGG | - | chr1.3:42653698-42653717 | MS.gene41103:intron | 35.0% |
| ! | TTTATGCGAAGTGTTTACAC+CGG | - | chr1.3:42654965-42654984 | MS.gene41103:intron | 35.0% |
| !! | AACACAATCTCTCTGCTTTT+TGG | - | chr1.3:42655608-42655627 | MS.gene41103:intron | 35.0% |
| !! | CATCGATGATTTTAGGTCAA+CGG | + | chr1.3:42653583-42653602 | None:intergenic | 35.0% |
| !!! | GAGTTTTAGGATTTCGCATT+GGG | - | chr1.3:42654408-42654427 | MS.gene41103:intron | 35.0% |
| !!! | TGAGTTTTAGGATTTCGCAT+TGG | - | chr1.3:42654407-42654426 | MS.gene41103:intron | 35.0% |
| AAAACGGCGATGAGTTAGAT+TGG | + | chr1.3:42653470-42653489 | None:intergenic | 40.0% | |
| ACTTCTCTGCATCCATTGTT+AGG | - | chr1.3:42654767-42654786 | MS.gene41103:intron | 40.0% | |
| ATGACATTTACATGCGCTCT+TGG | - | chr1.3:42654700-42654719 | MS.gene41103:intron | 40.0% | |
| ATGGATGTTACTGCATGTGT+CGG | - | chr1.3:42653974-42653993 | MS.gene41103:intron | 40.0% | |
| CATTGGGCGTGGTTAAAATA+TGG | - | chr1.3:42654424-42654443 | MS.gene41103:intron | 40.0% | |
| CTGTATTTGCACATGAACAC+TGG | - | chr1.3:42655050-42655069 | MS.gene41103:intron | 40.0% | |
| GAACCAGTTTATGTGGAAGT+TGG | - | chr1.3:42654869-42654888 | MS.gene41103:intron | 40.0% | |
| GCAAGAAGCCCAAATTTCTT+TGG | + | chr1.3:42655695-42655714 | None:intergenic | 40.0% | |
| GTTAGCTATGGAATGGATGA+TGG | - | chr1.3:42654675-42654694 | MS.gene41103:intron | 40.0% | |
| TAAGCATGGGAGTAGTAACT+AGG | + | chr1.3:42654500-42654519 | None:intergenic | 40.0% | |
| TATCCGTACTTCAGAGTTTC+CGG | - | chr1.3:42654063-42654082 | MS.gene41103:intron | 40.0% | |
| TCACCGATCCAAAATTCCAT+CGG | + | chr1.3:42653671-42653690 | None:intergenic | 40.0% | |
| ! | GAACGAGGTGAAAAAGGTAT+TGG | - | chr1.3:42654642-42654661 | MS.gene41103:intron | 40.0% |
| ! | GTACTTAACAGGTGGTTTTC+AGG | - | chr1.3:42655332-42655351 | MS.gene41103:intron | 40.0% |
| ! | TATGTTCTGTTGCTTCAAGC+TGG | + | chr1.3:42654915-42654934 | None:intergenic | 40.0% |
| ! | TGCCATTTCTTTCTTCAGCT+GGG | + | chr1.3:42655756-42655775 | None:intergenic | 40.0% |
| ! | TTTTGTGCGTACTTAACAGG+TGG | - | chr1.3:42655324-42655343 | MS.gene41103:intron | 40.0% |
| !! | GGTGAAAAAGGTATTGGTGA+TGG | - | chr1.3:42654648-42654667 | MS.gene41103:intron | 40.0% |
| !! | GTGTAGTTGGTGTTAGGATT+CGG | - | chr1.3:42653996-42654015 | MS.gene41103:intron | 40.0% |
| AAGGAACTTCAGATTGCTGG+AGG | - | chr1.3:42654614-42654633 | MS.gene41103:CDS | 45.0% | |
| AAGTACGAGTGCACTTGTTC+CGG | - | chr1.3:42654380-42654399 | MS.gene41103:intron | 45.0% | |
| ATGCGTGTCAGACACTTTGA+CGG | - | chr1.3:42654025-42654044 | MS.gene41103:intron | 45.0% | |
| ATTTACATGCGCTCTTGGAC+TGG | - | chr1.3:42654705-42654724 | MS.gene41103:intron | 45.0% | |
| CATATGCCCTTCCTATGTTC+TGG | - | chr1.3:42655185-42655204 | MS.gene41103:intron | 45.0% | |
| CATCACACTTATCTCGTAGC+CGG | + | chr1.3:42654085-42654104 | None:intergenic | 45.0% | |
| CGTGAATGAAACCGAACACT+TGG | + | chr1.3:42655458-42655477 | None:intergenic | 45.0% | |
| GAATGAAACCGAACACTTGG+CGG | + | chr1.3:42655455-42655474 | None:intergenic | 45.0% | |
| GACCCAGCTGAAGAAAGAAA+TGG | - | chr1.3:42655751-42655770 | MS.gene41103:intron | 45.0% | |
| GAGCTTGAACGAGGTGAAAA+AGG | - | chr1.3:42654636-42654655 | MS.gene41103:intron | 45.0% | |
| GCTACGAGATAAGTGTGATG+AGG | - | chr1.3:42654085-42654104 | MS.gene41103:intron | 45.0% | |
| GCTCACAAGCAACTAAACAC+AGG | + | chr1.3:42655022-42655041 | None:intergenic | 45.0% | |
| TACATTATGGGGGCCAATGA+TGG | + | chr1.3:42654733-42654752 | None:intergenic | 45.0% | |
| TCCAAGGAACTTCAGATTGC+TGG | - | chr1.3:42654611-42654630 | MS.gene41103:CDS | 45.0% | |
| TGGCACTGTTAGCTATGGAA+TGG | - | chr1.3:42654668-42654687 | MS.gene41103:intron | 45.0% | |
| TGTTAACCATGAAACTGGCG+TGG | - | chr1.3:42655493-42655512 | MS.gene41103:intron | 45.0% | |
| ! | CTGCCATTTCTTTCTTCAGC+TGG | + | chr1.3:42655757-42655776 | None:intergenic | 45.0% |
| ! | TCCAGCAATCTGAAGTTCCT+TGG | + | chr1.3:42654615-42654634 | None:intergenic | 45.0% |
| ! | TGTTCCGGTCCTTGAGTTTT+AGG | - | chr1.3:42654395-42654414 | MS.gene41103:intron | 45.0% |
| ! | TTGGCAAAGAGAGTACAGCA+TGG | - | chr1.3:42655718-42655737 | MS.gene41103:intron | 45.0% |
| !! | TAGCCGGAAACTCTGAAGTA+CGG | + | chr1.3:42654069-42654088 | None:intergenic | 45.0% |
| AAATGGCAGCCCCTCATAAC+CGG | - | chr1.3:42655768-42655787 | MS.gene41103:intron | 50.0% | |
| ATGCCCTTCCTATGTTCTGG+CGG | - | chr1.3:42655188-42655207 | MS.gene41103:intron | 50.0% | |
| CAGAAAAGCCGCCAAGTGTT+CGG | - | chr1.3:42655444-42655463 | MS.gene41103:intron | 50.0% | |
| CTGATACCACGCCAGTTTCA+TGG | + | chr1.3:42655502-42655521 | None:intergenic | 50.0% | |
| GAAAAGACCCGCCAGAACAT+AGG | + | chr1.3:42655199-42655218 | None:intergenic | 50.0% | |
| GACAAGCTTCCGGTTATGAG+GGG | + | chr1.3:42655780-42655799 | None:intergenic | 50.0% | |
| GGACAAGCTTCCGGTTATGA+GGG | + | chr1.3:42655781-42655800 | None:intergenic | 50.0% | |
| TGCGCTTCAATGCAGTTCCA+AGG | - | chr1.3:42654595-42654614 | MS.gene41103:CDS | 50.0% | |
| TGGACAAGCTTCCGGTTATG+AGG | + | chr1.3:42655782-42655801 | None:intergenic | 50.0% | |
| TGGTAACTAACCGACGACAC+TGG | + | chr1.3:42653450-42653469 | None:intergenic | 50.0% | |
| TTAGGATTTCGCATTGGGCG+TGG | - | chr1.3:42654413-42654432 | MS.gene41103:intron | 50.0% | |
| ! | ACTGCATGTGTCGGTGTAGT+TGG | - | chr1.3:42653983-42654002 | MS.gene41103:intron | 50.0% |
| ! | AGTAAGTTCCTTCTGGAGGC+TGG | + | chr1.3:42655802-42655821 | None:intergenic | 50.0% |
| ! | GAACACTTGGCGGCTTTTCT+GGG | + | chr1.3:42655445-42655464 | None:intergenic | 50.0% |
| ! | GCAAAGAGAGTACAGCATGG+AGG | - | chr1.3:42655721-42655740 | MS.gene41103:intron | 50.0% |
| ! | GGTGATGGCACTGTTAGCTA+TGG | - | chr1.3:42654663-42654682 | MS.gene41103:intron | 50.0% |
| ! | GTGTCGGTGTAGTTGGTGTT+AGG | - | chr1.3:42653990-42654009 | MS.gene41103:intron | 50.0% |
| !! | TCTTGGACTGGCACCATCAT+TGG | - | chr1.3:42654717-42654736 | MS.gene41103:intron | 50.0% |
| AAGCTTGTCCAGCCTCCAGA+AGG | - | chr1.3:42655791-42655810 | MS.gene41103:intron | 55.0% | |
| AGACCCGCCAGAACATAGGA+AGG | + | chr1.3:42655195-42655214 | None:intergenic | 55.0% | |
| CTAACCGACGACACTGGATC+CGG | + | chr1.3:42653444-42653463 | None:intergenic | 55.0% | |
| GACCCGCCAGAACATAGGAA+GGG | + | chr1.3:42655194-42655213 | None:intergenic | 55.0% | |
| TGCCCTTCCTATGTTCTGGC+GGG | - | chr1.3:42655189-42655208 | MS.gene41103:intron | 55.0% | |
| TTGCTGGAGGAGCTTGAACG+AGG | - | chr1.3:42654627-42654646 | MS.gene41103:intron | 55.0% | |
| ! | CGAACACTTGGCGGCTTTTC+TGG | + | chr1.3:42655446-42655465 | None:intergenic | 55.0% |
| CTGGAGGCTGGACAAGCTTC+CGG | + | chr1.3:42655790-42655809 | None:intergenic | 60.0% | |
| TCAGCCGGATCCAGTGTCGT+CGG | - | chr1.3:42653437-42653456 | MS.gene41103:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 42653425 | 42655826 | 42653425 | ID=MS.gene41103 |
| chr1.3 | mRNA | 42653425 | 42655826 | 42653425 | ID=MS.gene41103.t1;Parent=MS.gene41103 |
| chr1.3 | exon | 42655793 | 42655826 | 42655793 | ID=MS.gene41103.t1.exon1;Parent=MS.gene41103.t1 |
| chr1.3 | CDS | 42655793 | 42655826 | 42655793 | ID=cds.MS.gene41103.t1;Parent=MS.gene41103.t1 |
| chr1.3 | exon | 42654502 | 42654641 | 42654502 | ID=MS.gene41103.t1.exon2;Parent=MS.gene41103.t1 |
| chr1.3 | CDS | 42654502 | 42654641 | 42654502 | ID=cds.MS.gene41103.t1;Parent=MS.gene41103.t1 |
| chr1.3 | exon | 42653737 | 42653862 | 42653737 | ID=MS.gene41103.t1.exon3;Parent=MS.gene41103.t1 |
| chr1.3 | CDS | 42653737 | 42653862 | 42653737 | ID=cds.MS.gene41103.t1;Parent=MS.gene41103.t1 |
| chr1.3 | exon | 42653425 | 42653565 | 42653425 | ID=MS.gene41103.t1.exon4;Parent=MS.gene41103.t1 |
| chr1.3 | CDS | 42653425 | 42653565 | 42653425 | ID=cds.MS.gene41103.t1;Parent=MS.gene41103.t1 |
| Gene Sequence |
| Protein sequence |
