Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015707.t1 | XP_003630870.1 | 96.1 | 969 | 34 | 2 | 1 | 966 | 1 | 968 | 0.00E+00 | 1703.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015707.t1 | Q9C744 | 55.1 | 859 | 311 | 7 | 4 | 854 | 3 | 794 | 1.8e-245 | 850.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015707.t1 | G7L9R3 | 96.1 | 969 | 34 | 2 | 1 | 966 | 1 | 968 | 0.0e+00 | 1703.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08515 | MS.gene015707 | PPI |
| MS.gene84170 | MS.gene015707 | PPI |
| MS.gene82003 | MS.gene015707 | PPI |
| MS.gene011991 | MS.gene015707 | PPI |
| MS.gene036995 | MS.gene015707 | PPI |
| MS.gene060477 | MS.gene015707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015707.t1 | MTR_8g104380 | 96.801 | 969 | 27 | 2 | 1 | 966 | 1 | 968 | 0.0 | 1906 |
| MS.gene015707.t1 | MTR_5g034780 | 23.832 | 428 | 279 | 9 | 18 | 412 | 10 | 423 | 1.55e-27 | 120 |
| MS.gene015707.t1 | MTR_2g084610 | 21.805 | 532 | 354 | 16 | 36 | 522 | 29 | 543 | 8.84e-21 | 99.0 |
| MS.gene015707.t1 | MTR_8g072250 | 25.455 | 385 | 258 | 10 | 20 | 379 | 27 | 407 | 1.10e-17 | 89.0 |
| MS.gene015707.t1 | MTR_8g063690 | 30.909 | 165 | 111 | 2 | 18 | 180 | 10 | 173 | 9.92e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015707.t1 | AT1G48760 | 70.943 | 530 | 154 | 0 | 4 | 533 | 3 | 532 | 0.0 | 811 |
| MS.gene015707.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 1.04e-40 | 162 |
| MS.gene015707.t1 | AT1G48760 | 70.943 | 530 | 154 | 0 | 4 | 533 | 3 | 532 | 0.0 | 811 |
| MS.gene015707.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 1.04e-40 | 162 |
| MS.gene015707.t1 | AT1G48760 | 70.943 | 530 | 154 | 0 | 4 | 533 | 3 | 532 | 0.0 | 811 |
| MS.gene015707.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 1.04e-40 | 162 |
| MS.gene015707.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 3.78e-29 | 125 |
| MS.gene015707.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 5.14e-29 | 125 |
| MS.gene015707.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 3.37e-26 | 116 |
| MS.gene015707.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 3.37e-26 | 116 |
| MS.gene015707.t1 | AT1G23900 | 22.892 | 498 | 322 | 10 | 32 | 492 | 14 | 486 | 1.34e-25 | 114 |
| MS.gene015707.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 1.05e-22 | 105 |
| MS.gene015707.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 1.05e-22 | 105 |
| MS.gene015707.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 1.05e-22 | 105 |
| MS.gene015707.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 1.05e-22 | 105 |
| MS.gene015707.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 1.05e-22 | 105 |
| MS.gene015707.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 1.05e-22 | 105 |
| MS.gene015707.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 2.32e-22 | 104 |
| MS.gene015707.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 2.32e-22 | 104 |
| MS.gene015707.t1 | AT1G31730 | 23.451 | 452 | 302 | 10 | 61 | 481 | 72 | 510 | 2.00e-21 | 101 |
| MS.gene015707.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 920 | 1088 | 4.06e-11 | 67.8 |
| MS.gene015707.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 870 | 1038 | 4.49e-11 | 67.8 |
| MS.gene015707.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 869 | 1037 | 4.53e-11 | 67.8 |
Find 0 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTCAATTCGATTTAAT+AGG | - | 57353:32973-32992 | MS.gene015707:intergenic | 15.0% |
| !!! | AATCGAATTGAATTAATTTT+TGG | + | 57353:32977-32996 | MS.gene015707:CDS | 15.0% |
| !! | ATATTAAAATTGAGTCTTTG+CGG | + | 57353:32171-32190 | MS.gene015707:CDS | 20.0% |
| !! | ATTTATATTACTGTTTGACT+TGG | - | 57353:33488-33507 | MS.gene015707:intergenic | 20.0% |
| !!! | TAAAGTTTTAAGTTTTTGTC+TGG | + | 57353:32673-32692 | MS.gene015707:CDS | 20.0% |
| !!! | TTTATATTACTGTTTGACTT+GGG | - | 57353:33487-33506 | MS.gene015707:intergenic | 20.0% |
| ! | AAAATCTCATTGCAAAATTC+TGG | - | 57353:32275-32294 | MS.gene015707:intergenic | 25.0% |
| ! | AACCAAAATCCTATAAAACT+CGG | - | 57353:31799-31818 | MS.gene015707:intergenic | 25.0% |
| ! | GAATAATTGGGTTCTTATTA+AGG | + | 57353:31827-31846 | MS.gene015707:CDS | 25.0% |
| ! | GATAACAAATTGAAGATATC+AGG | - | 57353:31576-31595 | MS.gene015707:intergenic | 25.0% |
| !! | AGAATTTTGCAATGAGATTT+TGG | + | 57353:32274-32293 | MS.gene015707:CDS | 25.0% |
| !! | AGATTTTCTTTCATTTCAGA+TGG | - | 57353:33784-33803 | MS.gene015707:intergenic | 25.0% |
| !! | GAATTTTGCAATGAGATTTT+GGG | + | 57353:32275-32294 | MS.gene015707:CDS | 25.0% |
| !! | GGTTGATTCTAAGAATAATT+GGG | + | 57353:31815-31834 | MS.gene015707:CDS | 25.0% |
| !! | TCTGAAATGAAAGAAAATCT+TGG | + | 57353:33784-33803 | MS.gene015707:CDS | 25.0% |
| !! | TGGTTGATTCTAAGAATAAT+TGG | + | 57353:31814-31833 | MS.gene015707:CDS | 25.0% |
| !!! | AGATCATTGTTGATTTTGAT+TGG | + | 57353:32333-32352 | MS.gene015707:CDS | 25.0% |
| !!! | TAGGGTTTGTTTTAAAAGAT+TGG | + | 57353:31671-31690 | MS.gene015707:CDS | 25.0% |
| !!! | TTATATTACTGTTTGACTTG+GGG | - | 57353:33486-33505 | MS.gene015707:intergenic | 25.0% |
| !!! | TTATTTTTGCTACTCGAATT+GGG | - | 57353:33838-33857 | MS.gene015707:intergenic | 25.0% |
| !!! | TTTATTTTTGCTACTCGAAT+TGG | - | 57353:33839-33858 | MS.gene015707:intergenic | 25.0% |
| AAACCAAGATACCTAAGATT+AGG | - | 57353:32059-32078 | MS.gene015707:intergenic | 30.0% | |
| AAGTACCTTCATCTTTATCA+AGG | - | 57353:32706-32725 | MS.gene015707:intergenic | 30.0% | |
| AAGTGAAGCATGAAAATGAT+TGG | - | 57353:31499-31518 | MS.gene015707:intergenic | 30.0% | |
| ACCAAAATCCTATAAAACTC+GGG | - | 57353:31798-31817 | MS.gene015707:intergenic | 30.0% | |
| ATAAAAGATGTTCTTGGAAG+TGG | + | 57353:33673-33692 | MS.gene015707:CDS | 30.0% | |
| ATGTAAACTGCTCTTATTGA+CGG | - | 57353:32641-32660 | MS.gene015707:intergenic | 30.0% | |
| CATATCTTCATCAGAAGATT+CGG | - | 57353:32873-32892 | MS.gene015707:intergenic | 30.0% | |
| CTTCTAATATGCTCACAAAT+AGG | - | 57353:31915-31934 | MS.gene015707:intergenic | 30.0% | |
| GACGATTTAAAAGCAATATG+TGG | + | 57353:33244-33263 | MS.gene015707:CDS | 30.0% | |
| GAGAATCAGCTTATTGATAT+TGG | + | 57353:32416-32435 | MS.gene015707:CDS | 30.0% | |
| GATTAAATCTTTGGATGATG+AGG | + | 57353:32142-32161 | MS.gene015707:CDS | 30.0% | |
| GCAAAAATAAAGAGAGAAGA+CGG | + | 57353:33848-33867 | MS.gene015707:CDS | 30.0% | |
| GTAAAGAGAAGATTGTTGAA+GGG | + | 57353:33875-33894 | MS.gene015707:CDS | 30.0% | |
| GTGTAAAACGAAATTGATGA+AGG | - | 57353:33283-33302 | MS.gene015707:intergenic | 30.0% | |
| TAAAGAGAAGATTGTTGAAG+GGG | + | 57353:33876-33895 | MS.gene015707:CDS | 30.0% | |
| TGATATTGGTATGAGAGTTA+AGG | + | 57353:32430-32449 | MS.gene015707:CDS | 30.0% | |
| TGCTTTAATCAACTGTACAA+AGG | - | 57353:33059-33078 | MS.gene015707:intergenic | 30.0% | |
| TGTTACCTTGATAAAGATGA+AGG | + | 57353:32698-32717 | MS.gene015707:CDS | 30.0% | |
| TTCTTCATCTTCTTCAATCA+TGG | + | 57353:31134-31153 | MS.gene015707:CDS | 30.0% | |
| TTGATAAGTCATCAACTAAG+CGG | + | 57353:33728-33747 | MS.gene015707:CDS | 30.0% | |
| ! | AAAAGAAAGTCTGGAATTAC+TGG | - | 57353:34003-34022 | MS.gene015707:intergenic | 30.0% |
| ! | ACTTCCAAGAACATCTTTTA+TGG | - | 57353:33674-33693 | MS.gene015707:intergenic | 30.0% |
| ! | GATTGGTATGTATCTCTTTT+GGG | + | 57353:32350-32369 | MS.gene015707:CDS | 30.0% |
| ! | GCAGAAATAATTGATAACTC+TGG | + | 57353:33076-33095 | MS.gene015707:CDS | 30.0% |
| ! | TCATCAATTTCGTTTTACAC+AGG | + | 57353:33283-33302 | MS.gene015707:CDS | 30.0% |
| ! | TGATTGGTATGTATCTCTTT+TGG | + | 57353:32349-32368 | MS.gene015707:CDS | 30.0% |
| ! | TTCTAAAAAATGACGAGTCA+GGG | + | 57353:33350-33369 | MS.gene015707:CDS | 30.0% |
| ! | TTTGAAGATTTTTGCTAGGT+TGG | + | 57353:31851-31870 | MS.gene015707:CDS | 30.0% |
| !! | CAATTTGTTATCGTCTTCTA+GGG | + | 57353:31584-31603 | MS.gene015707:CDS | 30.0% |
| !! | TCAATTTGTTATCGTCTTCT+AGG | + | 57353:31583-31602 | MS.gene015707:CDS | 30.0% |
| !! | TTAGTTGATGACTTATCAAG+AGG | - | 57353:33727-33746 | MS.gene015707:intergenic | 30.0% |
| !!! | AGGTTTTGAAGATTTTTGCT+AGG | + | 57353:31847-31866 | MS.gene015707:CDS | 30.0% |
| AAGATCTTTACGAAGCTGAT+TGG | - | 57353:31469-31488 | MS.gene015707:intergenic | 35.0% | |
| AAGATGATTCTGTGAGAAGT+TGG | - | 57353:31209-31228 | MS.gene015707:intergenic | 35.0% | |
| AATGACAGCAATAACAACCT+TGG | - | 57353:31721-31740 | MS.gene015707:intergenic | 35.0% | |
| ATAAGTATCCTGATGCTGTT+AGG | + | 57353:31652-31671 | MS.gene015707:CDS | 35.0% | |
| ATCGTTGAAGGAAATTGAAG+CGG | - | 57353:31421-31440 | MS.gene015707:intergenic | 35.0% | |
| ATGACAGCAATAACAACCTT+GGG | - | 57353:31720-31739 | MS.gene015707:intergenic | 35.0% | |
| ATGATTCCTCATTGCCAAAA+GGG | + | 57353:32383-32402 | MS.gene015707:CDS | 35.0% | |
| GATCCTAATCTTAGGTATCT+TGG | + | 57353:32053-32072 | MS.gene015707:CDS | 35.0% | |
| GGATGCTGTGATTAAATCTT+TGG | + | 57353:32133-32152 | MS.gene015707:CDS | 35.0% | |
| GGTAAAGAGAAGATTGTTGA+AGG | + | 57353:33874-33893 | MS.gene015707:CDS | 35.0% | |
| TAAGTATCCTGATGCTGTTA+GGG | + | 57353:31653-31672 | MS.gene015707:CDS | 35.0% | |
| TCAACTTATGAACAGGATGA+GGG | + | 57353:32824-32843 | MS.gene015707:CDS | 35.0% | |
| TGAAGGTTCAACTTATGAAC+AGG | + | 57353:32817-32836 | MS.gene015707:CDS | 35.0% | |
| TGTGAGCATATTAGAAGATC+TGG | + | 57353:31918-31937 | MS.gene015707:CDS | 35.0% | |
| TTCAACTTATGAACAGGATG+AGG | + | 57353:32823-32842 | MS.gene015707:CDS | 35.0% | |
| TTCGAAAATTAGGGAGTTGT+TGG | + | 57353:32022-32041 | MS.gene015707:CDS | 35.0% | |
| TTGATCAGGATCCTAATCTT+AGG | + | 57353:32045-32064 | MS.gene015707:CDS | 35.0% | |
| TTGATTGATCCTGCATTGTT+GGG | + | 57353:32491-32510 | MS.gene015707:CDS | 35.0% | |
| TTTCTGTGAACTTAGTTCCA+AGG | + | 57353:31746-31765 | MS.gene015707:CDS | 35.0% | |
| ! | AAGGTTGTTATTGCTGTCAT+TGG | + | 57353:31720-31739 | MS.gene015707:CDS | 35.0% |
| ! | AATATAATCCATGCCGCTTA+CGG | - | 57353:33408-33427 | MS.gene015707:intergenic | 35.0% |
| ! | ATGCTAGATTACAGCTTGTT+CGG | + | 57353:32453-32472 | MS.gene015707:CDS | 35.0% |
| ! | CTTCTAAAAAATGACGAGTC+AGG | + | 57353:33349-33368 | MS.gene015707:CDS | 35.0% |
| ! | TCAATTTCGTTTTACACAGG+AGG | + | 57353:33286-33305 | MS.gene015707:CDS | 35.0% |
| ! | TCTCAATTTCTTCACCCTTT+TGG | - | 57353:32400-32419 | MS.gene015707:intergenic | 35.0% |
| ! | TCTTTAAGAGCTAATCCATC+TGG | - | 57353:33217-33236 | MS.gene015707:intergenic | 35.0% |
| ! | TTTAGAAAGTTCTGATCCCA+AGG | + | 57353:31701-31720 | MS.gene015707:CDS | 35.0% |
| !! | AGTCACTTCTTTTGAAGAAG+AGG | + | 57353:33542-33561 | MS.gene015707:CDS | 35.0% |
| !! | GATTACTTTGAGACAAACTC+GGG | - | 57353:33705-33724 | MS.gene015707:intergenic | 35.0% |
| !! | GGATTACTTTGAGACAAACT+CGG | - | 57353:33706-33725 | MS.gene015707:intergenic | 35.0% |
| !!! | AAGCTATTGCTGTTGTTTTG+AGG | + | 57353:31622-31641 | MS.gene015707:CDS | 35.0% |
| !!! | AGCTATTGCTGTTGTTTTGA+GGG | + | 57353:31623-31642 | MS.gene015707:CDS | 35.0% |
| !!! | CGTCTTCTAGGGTTTTTATT+AGG | + | 57353:31595-31614 | MS.gene015707:CDS | 35.0% |
| AAACAAACCCTAACAGCATC+AGG | - | 57353:31663-31682 | MS.gene015707:intergenic | 40.0% | |
| AAATAAAAGGCCAGAGCCAA+GGG | + | 57353:33630-33649 | MS.gene015707:CDS | 40.0% | |
| AACCACGTTTAAGGGTGAAT+TGG | - | 57353:33971-33990 | MS.gene015707:intergenic | 40.0% | |
| AAGTCATCAACTAAGCGGAA+AGG | + | 57353:33733-33752 | MS.gene015707:CDS | 40.0% | |
| AATAAAGAGAGAAGACGGAG+AGG | + | 57353:33853-33872 | MS.gene015707:CDS | 40.0% | |
| AGTCATCAACTAAGCGGAAA+GGG | + | 57353:33734-33753 | MS.gene015707:CDS | 40.0% | |
| AGTTGGCGGTTTCGAAAATT+AGG | + | 57353:32012-32031 | MS.gene015707:CDS | 40.0% | |
| ATAAACATTCCTACCACACG+TGG | - | 57353:32312-32331 | MS.gene015707:intergenic | 40.0% | |
| ATCTTCATCAGAAGATTCGG+CGG | - | 57353:32870-32889 | MS.gene015707:intergenic | 40.0% | |
| CTCTTCCTTCACAAACGAAT+TGG | + | 57353:31387-31406 | MS.gene015707:CDS | 40.0% | |
| GAAATAGTGGCAACATGTGA+AGG | + | 57353:32800-32819 | MS.gene015707:CDS | 40.0% | |
| GATGATTCCTCATTGCCAAA+AGG | + | 57353:32382-32401 | MS.gene015707:CDS | 40.0% | |
| GGATTTGATGAGATCGTCTA+GGG | - | 57353:31178-31197 | MS.gene015707:intergenic | 40.0% | |
| GGTAACCAATTCGTTTGTGA+AGG | - | 57353:31395-31414 | MS.gene015707:intergenic | 40.0% | |
| GTTGATTGATCCTGCATTGT+TGG | + | 57353:32490-32509 | MS.gene015707:CDS | 40.0% | |
| GTTGGCGGTTTCGAAAATTA+GGG | + | 57353:32013-32032 | MS.gene015707:CDS | 40.0% | |
| GTTTGGGAAACCACGTTTAA+GGG | - | 57353:33979-33998 | MS.gene015707:intergenic | 40.0% | |
| TAAACTGCTCTTATTGACGG+AGG | - | 57353:32638-32657 | MS.gene015707:intergenic | 40.0% | |
| TACACATTACCCAACAATGC+AGG | - | 57353:32503-32522 | MS.gene015707:intergenic | 40.0% | |
| TCACATGTTGCCACTATTTC+AGG | - | 57353:32800-32819 | MS.gene015707:intergenic | 40.0% | |
| TGATAACTCTGGTCAGAATG+TGG | + | 57353:33087-33106 | MS.gene015707:CDS | 40.0% | |
| TGGATTTGATGAGATCGTCT+AGG | - | 57353:31179-31198 | MS.gene015707:intergenic | 40.0% | |
| TGGGTAATGTGTACTTGCAT+AGG | + | 57353:32510-32529 | MS.gene015707:CDS | 40.0% | |
| TGTTTGGGAAACCACGTTTA+AGG | - | 57353:33980-33999 | MS.gene015707:intergenic | 40.0% | |
| TTCCTTCAACGATTCAACAC+CGG | + | 57353:31428-31447 | MS.gene015707:CDS | 40.0% | |
| TTTGCTGGGGGATAATCATT+TGG | - | 57353:33460-33479 | MS.gene015707:intergenic | 40.0% | |
| TTTGTGAAGGAAGAGAGAAG+AGG | - | 57353:31382-31401 | MS.gene015707:intergenic | 40.0% | |
| ! | AGAGCATCAATGAGTTCAAG+TGG | - | 57353:32590-32609 | MS.gene015707:intergenic | 40.0% |
| ! | AGTCTGGAATTACTGGTGTT+TGG | - | 57353:33996-34015 | MS.gene015707:intergenic | 40.0% |
| ! | CAATGTGGTGGAGATATCTA+GGG | + | 57353:32220-32239 | MS.gene015707:CDS | 40.0% |
| ! | CTACTCGAATTGGGATTTTC+AGG | - | 57353:33829-33848 | MS.gene015707:intergenic | 40.0% |
| ! | GGTGCCATAAAAGATGTTCT+TGG | + | 57353:33667-33686 | MS.gene015707:CDS | 40.0% |
| ! | GTCTGGAATTACTGGTGTTT+GGG | - | 57353:33995-34014 | MS.gene015707:intergenic | 40.0% |
| ! | TCTCAGTCTTATCTGAAGCA+AGG | - | 57353:33432-33451 | MS.gene015707:intergenic | 40.0% |
| ! | TCTGAAGTAGTGCCAAATTG+AGG | - | 57353:33313-33332 | MS.gene015707:intergenic | 40.0% |
| ! | TGCTAGATTACAGCTTGTTC+GGG | + | 57353:32454-32473 | MS.gene015707:CDS | 40.0% |
| !! | CAATTTTAACCACGTGTGGT+AGG | + | 57353:32300-32319 | MS.gene015707:CDS | 40.0% |
| !! | GAATTGGGATTTTCAGGATC+AGG | - | 57353:33823-33842 | MS.gene015707:intergenic | 40.0% |
| !! | GCCCGAGTTTTATAGGATTT+TGG | + | 57353:31794-31813 | MS.gene015707:CDS | 40.0% |
| !! | GGTTCAATTTTAACCACGTG+TGG | + | 57353:32296-32315 | MS.gene015707:CDS | 40.0% |
| !! | TTGGTGATGAGAAGAAGAAC+CGG | - | 57353:31450-31469 | MS.gene015707:intergenic | 40.0% |
| !!! | GTAGGTGAGTTTTTGAAGTG+CGG | - | 57353:31298-31317 | MS.gene015707:intergenic | 40.0% |
| !!! | TTTTTGAAGTGCGGTGGATT+TGG | - | 57353:31289-31308 | MS.gene015707:intergenic | 40.0% |
| AAAAAGAGTAGCCACCGTCA+TGG | + | 57353:33922-33941 | MS.gene015707:CDS | 45.0% | |
| AAGATACGATCTCGGATCCT+TGG | - | 57353:31766-31785 | MS.gene015707:intergenic | 45.0% | |
| AAGTGACTGCTCTGTCAACT+TGG | - | 57353:33530-33549 | MS.gene015707:intergenic | 45.0% | |
| AATCTCACCACTACAGGTCT+GGG | - | 57353:33583-33602 | MS.gene015707:intergenic | 45.0% | |
| ACAATCCTCTTCCCTAACCT+AGG | - | 57353:31888-31907 | MS.gene015707:intergenic | 45.0% | |
| AGCCAATTCACCCTTAAACG+TGG | + | 57353:33966-33985 | MS.gene015707:CDS | 45.0% | |
| AGGGGAAGAATCTGATCAGA+AGG | + | 57353:33894-33913 | MS.gene015707:CDS | 45.0% | |
| ATTCGGCGGTTGAATTCCTT+GGG | - | 57353:32856-32875 | MS.gene015707:intergenic | 45.0% | |
| CAAATAAAAGGCCAGAGCCA+AGG | + | 57353:33629-33648 | MS.gene015707:CDS | 45.0% | |
| CACTGAAGCTCCTGAAATAG+TGG | + | 57353:32787-32806 | MS.gene015707:CDS | 45.0% | |
| CAGCACCAGGTCCAAATAAA+AGG | + | 57353:33617-33636 | MS.gene015707:CDS | 45.0% | |
| CCAAGGGACAATTCTCTTTC+TGG | + | 57353:33646-33665 | MS.gene015707:CDS | 45.0% | |
| CCAGAAAGAGAATTGTCCCT+TGG | - | 57353:33649-33668 | MS.gene015707:intergenic | 45.0% | |
| CCAGTCTCAATAAGTGCACA+GGG | + | 57353:33178-33197 | MS.gene015707:CDS | 45.0% | |
| CCATGGAATCGACATGTCAT+GGG | + | 57353:31329-31348 | MS.gene015707:CDS | 45.0% | |
| CGGAAAGGGAAGAAGAAACT+AGG | + | 57353:33748-33767 | MS.gene015707:CDS | 45.0% | |
| GGAAGAGTTACTGTACCAGA+TGG | + | 57353:33199-33218 | MS.gene015707:CDS | 45.0% | |
| GGGGAAGAATCTGATCAGAA+GGG | + | 57353:33895-33914 | MS.gene015707:CDS | 45.0% | |
| GTAGTGGTGAGATTGGATGA+TGG | + | 57353:33589-33608 | MS.gene015707:CDS | 45.0% | |
| TACACAGGAGGTCCTCAATT+TGG | + | 57353:33298-33317 | MS.gene015707:CDS | 45.0% | |
| TATTGACGGAGGCAAGAGAT+TGG | - | 57353:32627-32646 | MS.gene015707:intergenic | 45.0% | |
| TCACGAGTCTGCTGTTAAGT+TGG | + | 57353:31995-32014 | MS.gene015707:CDS | 45.0% | |
| TCATCCAATCTCACCACTAC+AGG | - | 57353:33589-33608 | MS.gene015707:intergenic | 45.0% | |
| TCCAGTCTCAATAAGTGCAC+AGG | + | 57353:33177-33196 | MS.gene015707:CDS | 45.0% | |
| TCCATGGAATCGACATGTCA+TGG | + | 57353:31328-31347 | MS.gene015707:CDS | 45.0% | |
| TGAAGGAAATTGAAGCGGCA+TGG | - | 57353:31416-31435 | MS.gene015707:intergenic | 45.0% | |
| TGAGTCTTTGCGGTTGTTGA+TGG | + | 57353:32181-32200 | MS.gene015707:CDS | 45.0% | |
| TGGTTCACTGACAGCAAATC+AGG | + | 57353:32997-33016 | MS.gene015707:CDS | 45.0% | |
| TTCCCTAACCTAGGTTCCAA+AGG | - | 57353:31879-31898 | MS.gene015707:intergenic | 45.0% | |
| TTGATGCTCTTGTACAGCCT+CGG | + | 57353:32600-32619 | MS.gene015707:CDS | 45.0% | |
| ! | AACCGGTGTTGAATCGTTGA+AGG | - | 57353:31433-31452 | MS.gene015707:intergenic | 45.0% |
| ! | GATATTGTGTGCTGCTGCTT+GGG | + | 57353:32532-32551 | MS.gene015707:CDS | 45.0% |
| ! | GCAATGTGGTGGAGATATCT+AGG | + | 57353:32219-32238 | MS.gene015707:CDS | 45.0% |
| ! | TAGGGAGTTGTTGGTTGATC+AGG | + | 57353:32031-32050 | MS.gene015707:CDS | 45.0% |
| ! | TATGGTCTCTGAGAGCAATG+TGG | + | 57353:32205-32224 | MS.gene015707:CDS | 45.0% |
| ! | TCTTCACCCTTTTGGCAATG+AGG | - | 57353:32392-32411 | MS.gene015707:intergenic | 45.0% |
| ! | TGCTACGCTGAAGCATTTGT+GGG | + | 57353:32094-32113 | MS.gene015707:CDS | 45.0% |
| ! | TTGCTACGCTGAAGCATTTG+TGG | + | 57353:32093-32112 | MS.gene015707:CDS | 45.0% |
| !! | ACTTTGAGACAAACTCGGGT+TGG | - | 57353:33701-33720 | MS.gene015707:intergenic | 45.0% |
| !! | CTCCTTTGGAACCTAGGTTA+GGG | + | 57353:31874-31893 | MS.gene015707:CDS | 45.0% |
| !! | GGTGGATTTGGTTTGTGGAT+CGG | - | 57353:31277-31296 | MS.gene015707:intergenic | 45.0% |
| !! | TCTGGCCTTTTATTTGGACC+TGG | - | 57353:33625-33644 | MS.gene015707:intergenic | 45.0% |
| !! | TGACATGTCGATTCCATGGA+TGG | - | 57353:31328-31347 | MS.gene015707:intergenic | 45.0% |
| !! | TTGACTTGGGGTCATTTGCT+GGG | - | 57353:33474-33493 | MS.gene015707:intergenic | 45.0% |
| !! | TTTGACTTGGGGTCATTTGC+TGG | - | 57353:33475-33494 | MS.gene015707:intergenic | 45.0% |
| !! | TTTGCGGTTGTTGATGGCTA+TGG | + | 57353:32187-32206 | MS.gene015707:CDS | 45.0% |
| !! | TTTTGCTAGGTTGGCTCCTT+TGG | + | 57353:31860-31879 | MS.gene015707:CDS | 45.0% |
| !!! | CGCTTGTTTTTGAGTGTGTG+AGG | + | 57353:31949-31968 | MS.gene015707:CDS | 45.0% |
| !!! | CTTGGCTCTGGCCTTTTATT+TGG | - | 57353:33631-33650 | MS.gene015707:intergenic | 45.0% |
| !!! | GATGCTTTTTCCGTGGAACT+TGG | + | 57353:33154-33173 | MS.gene015707:CDS | 45.0% |
| AATGAAGCCCAGACCTGTAG+TGG | + | 57353:33573-33592 | MS.gene015707:CDS | 50.0% | |
| ACTCTGGTCAGAATGTGGAC+AGG | + | 57353:33092-33111 | MS.gene015707:CDS | 50.0% | |
| AGAGAATTGTCCCTTGGCTC+TGG | - | 57353:33643-33662 | MS.gene015707:intergenic | 50.0% | |
| AGGACATTACCTCGACAACG+TGG | - | 57353:31362-31381 | MS.gene015707:intergenic | 50.0% | |
| CAATCTCACCACTACAGGTC+TGG | - | 57353:33584-33603 | MS.gene015707:intergenic | 50.0% | |
| CAGACCTGTAGTGGTGAGAT+TGG | + | 57353:33582-33601 | MS.gene015707:CDS | 50.0% | |
| CATTACCTCGACAACGTGGA+AGG | - | 57353:31358-31377 | MS.gene015707:intergenic | 50.0% | |
| CCCTGTGCACTTATTGAGAC+TGG | - | 57353:33181-33200 | MS.gene015707:intergenic | 50.0% | |
| CCTTGCTTGAACACCGTAAG+CGG | + | 57353:33392-33411 | MS.gene015707:CDS | 50.0% | |
| CTATAAAACTCGGGCGCCAA+CGG | - | 57353:31789-31808 | MS.gene015707:intergenic | 50.0% | |
| GATTCGGCGGTTGAATTCCT+TGG | - | 57353:32857-32876 | MS.gene015707:intergenic | 50.0% | |
| GCCAACGGAAGATACGATCT+CGG | - | 57353:31774-31793 | MS.gene015707:intergenic | 50.0% | |
| GTGGGCAGTGCTAGAGAATA+AGG | + | 57353:32112-32131 | MS.gene015707:CDS | 50.0% | |
| TCCGAGATCGTATCTTCCGT+TGG | + | 57353:31770-31789 | MS.gene015707:CDS | 50.0% | |
| TGAGACTGGACCAAGTTCCA+CGG | - | 57353:33167-33186 | MS.gene015707:intergenic | 50.0% | |
| TGGAACCTAGGTTAGGGAAG+AGG | + | 57353:31880-31899 | MS.gene015707:CDS | 50.0% | |
| TGTGAGAAGTTGGAGTCGCA+TGG | - | 57353:31199-31218 | MS.gene015707:intergenic | 50.0% | |
| ! | AGGATGAGGGCTTTAACCCA+AGG | + | 57353:32837-32856 | MS.gene015707:CDS | 50.0% |
| ! | GAGTTTTACGCCTGCCATGA+CGG | - | 57353:33939-33958 | MS.gene015707:intergenic | 50.0% |
| ! | GGATATTGTGTGCTGCTGCT+TGG | + | 57353:32531-32550 | MS.gene015707:CDS | 50.0% |
| ! | TGACTTGGGGTCATTTGCTG+GGG | - | 57353:33473-33492 | MS.gene015707:intergenic | 50.0% |
| ! | TGAGATCGTCTAGGGTTCGT+TGG | - | 57353:31170-31189 | MS.gene015707:intergenic | 50.0% |
| !! | AGTGCGGTGGATTTGGTTTG+TGG | - | 57353:31282-31301 | MS.gene015707:intergenic | 50.0% |
| !! | CATGTCGATTCCATGGATGG+AGG | - | 57353:31325-31344 | MS.gene015707:intergenic | 50.0% |
| !! | CCCATGACATGTCGATTCCA+TGG | - | 57353:31332-31351 | MS.gene015707:intergenic | 50.0% |
| !! | CGAGTCTGCTGTTAAGTTGG+CGG | + | 57353:31998-32017 | MS.gene015707:CDS | 50.0% |
| !! | GAAGGTACTTCATCCTCACG+TGG | + | 57353:32716-32735 | MS.gene015707:CDS | 50.0% |
| !! | GCTCCTTTGGAACCTAGGTT+AGG | + | 57353:31873-31892 | MS.gene015707:CDS | 50.0% |
| !! | GGATTTGGTTTGTGGATCGG+TGG | - | 57353:31274-31293 | MS.gene015707:intergenic | 50.0% |
| !! | GTTCCACGGAAAAAGCATCG+CGG | - | 57353:33153-33172 | MS.gene015707:intergenic | 50.0% |
| !!! | GGTGAGTTTTTGAAGTGCGG+TGG | - | 57353:31295-31314 | MS.gene015707:intergenic | 50.0% |
| ACCTACCTCTCCTCCATCCA+TGG | + | 57353:31312-31331 | MS.gene015707:CDS | 55.0% | |
| CCGCTTACGGTGTTCAAGCA+AGG | - | 57353:33395-33414 | MS.gene015707:intergenic | 55.0% | |
| CGATTCCATGGATGGAGGAG+AGG | - | 57353:31320-31339 | MS.gene015707:intergenic | 55.0% | |
| CTTGAACACCGTAAGCGGCA+TGG | + | 57353:33397-33416 | MS.gene015707:CDS | 55.0% | |
| GGTACTTCATCCTCACGTGG+TGG | + | 57353:32719-32738 | MS.gene015707:CDS | 55.0% | |
| TCCATGGATGGAGGAGAGGT+AGG | - | 57353:31316-31335 | MS.gene015707:intergenic | 55.0% | |
| ! | ATCCTCACGTGGTGGCGAAT+TGG | + | 57353:32727-32746 | MS.gene015707:CDS | 55.0% |
| ! | GACTTGGGGTCATTTGCTGG+GGG | - | 57353:33472-33491 | MS.gene015707:intergenic | 55.0% |
| ! | GGTCTCTGAGAGCAATGTGG+TGG | + | 57353:32208-32227 | MS.gene015707:CDS | 55.0% |
| ! | TTTTACGCCTGCCATGACGG+TGG | - | 57353:33936-33955 | MS.gene015707:intergenic | 55.0% |
| !! | CACGGAAAAAGCATCGCGGA+TGG | - | 57353:33149-33168 | MS.gene015707:intergenic | 55.0% |
| !! | CGTTGGCGCCCGAGTTTTAT+AGG | + | 57353:31787-31806 | MS.gene015707:CDS | 55.0% |
| !! | GATGATGGAGATGCAGCACC+AGG | + | 57353:33604-33623 | MS.gene015707:CDS | 55.0% |
| !! | GGTTGGCTCCTTTGGAACCT+AGG | + | 57353:31868-31887 | MS.gene015707:CDS | 55.0% |
| !!! | CATCCGCGATGCTTTTTCCG+TGG | + | 57353:33147-33166 | MS.gene015707:CDS | 55.0% |
| AGAGTAGCCACCGTCATGGC+AGG | + | 57353:33926-33945 | MS.gene015707:CDS | 60.0% | |
| AGCCAATTCGCCACCACGTG+AGG | - | 57353:32732-32751 | MS.gene015707:intergenic | 60.0% | |
| GGCTTCCTTCCACGTTGTCG+AGG | + | 57353:31350-31369 | MS.gene015707:CDS | 60.0% | |
| ! | CGTGGTGGCGAATTGGCTAG+CGG | + | 57353:32734-32753 | MS.gene015707:CDS | 60.0% |
| ! | GGAGGCAAGAGATTGGTCCG+AGG | - | 57353:32620-32639 | MS.gene015707:intergenic | 60.0% |
| ! | TGTGCTGCTGCTTGGGTTGC+TGG | + | 57353:32539-32558 | MS.gene015707:CDS | 60.0% |
| ATCACGCGCGAGGTCGAGAG+TGG | - | 57353:31547-31566 | MS.gene015707:intergenic | 65.0% | |
| CAGGAGTGAGATCACGCGCG+AGG | - | 57353:31557-31576 | MS.gene015707:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57353 | gene | 31126 | 34026 | 31126 | ID=MS.gene015707 |
| 57353 | mRNA | 31126 | 34026 | 31126 | ID=MS.gene015707.t1;Parent=MS.gene015707 |
| 57353 | exon | 31126 | 34026 | 31126 | ID=MS.gene015707.t1.exon1;Parent=MS.gene015707.t1 |
| 57353 | CDS | 31126 | 34026 | 31126 | ID=cds.MS.gene015707.t1;Parent=MS.gene015707.t1 |
| Gene Sequence |
| Protein sequence |
