AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84170.t1 MTR_2g036390 97.304 408 10 1 1 408 1 407 0.0 793
MS.gene84170.t1 MTR_8g024240 76.961 408 71 4 1 408 1 385 0.0 555
MS.gene84170.t1 MTR_4g064893 47.368 380 175 4 31 407 37 394 7.21e-100 303
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84170.t1 AT2G46800 68.510 416 105 4 1 408 1 398 2.42e-179 505
MS.gene84170.t1 AT2G46800 68.510 416 105 4 1 408 1 398 2.42e-179 505
MS.gene84170.t1 AT2G46800 68.510 416 105 4 1 408 1 398 2.42e-179 505
MS.gene84170.t1 AT2G46800 68.510 416 105 4 1 408 1 398 2.42e-179 505
MS.gene84170.t1 AT2G46800 68.510 416 105 4 1 408 1 398 2.42e-179 505
MS.gene84170.t1 AT3G58810 66.582 395 94 4 15 408 74 431 1.26e-167 477
MS.gene84170.t1 AT3G58810 66.582 395 94 4 15 408 35 392 2.33e-167 474
MS.gene84170.t1 AT3G61940 71.341 164 42 1 245 408 176 334 3.39e-74 235
MS.gene84170.t1 AT3G61940 66.667 153 47 2 24 175 7 156 1.48e-64 210
MS.gene84170.t1 AT2G29410 50.000 146 73 0 31 176 36 181 7.74e-43 154
MS.gene84170.t1 AT2G04620 28.608 395 227 10 33 383 386 769 9.16e-33 131
MS.gene84170.t1 AT2G04620 29.134 381 229 9 33 381 218 589 1.35e-30 124
MS.gene84170.t1 AT1G33020 62.069 58 18 1 351 408 491 544 8.09e-14 73.6

Find 105 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTATGGCTTTGGTATT+GGG 0.244966 2.3:-52194670 MS.gene84170:CDS
TGGTTTCTATGCAATTAATA+TGG 0.258906 2.3:-52194804 MS.gene84170:CDS
TCCAGCCCATATAGAAAATA+AGG 0.287725 2.3:+52194888 None:intergenic
TATGTTCCGTTTCTTCTTCT+CGG 0.293379 2.3:+52194396 None:intergenic
CATCATTATGGCTTTGGTAT+TGG 0.295955 2.3:-52194671 MS.gene84170:CDS
TGAGGTAGTTGGTGGTATTA+AGG 0.314580 2.3:-52194977 MS.gene84170:CDS
CAACATGCTGAGAAACATTC+TGG 0.322869 2.3:-52194218 MS.gene84170:CDS
GAGGTTACTGAACCACTTCT+TGG 0.325560 2.3:-52194436 MS.gene84170:CDS
CCGAATCCTCGTCAGTCATT+TGG 0.330373 2.3:-52194856 MS.gene84170:CDS
CTGTTCATGAGCTGCACATA+TGG 0.341164 2.3:-52194114 MS.gene84170:CDS
TCAGATTCAAAAGGGGCTAT+TGG 0.341343 2.3:-52194155 MS.gene84170:CDS
TCTTGTGGTGAACATCATTA+TGG 0.376777 2.3:-52194683 MS.gene84170:CDS
CAATTAATATGGCTGTTTGC+TGG 0.377563 2.3:-52194793 MS.gene84170:CDS
AATAGAGATTCTTGGTGCTT+TGG 0.384622 2.3:-52194824 MS.gene84170:CDS
CAGAGTATTGGTGTAATGAT+TGG 0.384953 2.3:-52194331 MS.gene84170:CDS
AGAGTATTGGTGTAATGATT+GGG 0.403737 2.3:-52194330 MS.gene84170:CDS
AAACATTCTGGAAGTCTTGA+TGG 0.415617 2.3:-52194206 MS.gene84170:CDS
ATGTTTGTAGTTGCTGCATT+TGG 0.417750 2.3:-52194706 MS.gene84170:CDS
GGTGAACATCATTATGGCTT+TGG 0.430114 2.3:-52194677 MS.gene84170:CDS
CCAAATGACTGACGAGGATT+CGG 0.433628 2.3:+52194856 None:intergenic
GCCATTGCTAGACTCATTGC+AGG 0.434083 2.3:-52194754 MS.gene84170:CDS
CAGTAACCTCTTTGTGGTCA+TGG 0.441794 2.3:+52194449 None:intergenic
ATGTTCCGTTTCTTCTTCTC+GGG 0.446423 2.3:+52194397 None:intergenic
TTCATGTCCGTTGAGGTAGT+TGG 0.447396 2.3:-52194988 MS.gene84170:CDS
TTTCTATATGGGCTGGAGGA+TGG 0.450599 2.3:-52194882 MS.gene84170:CDS
TTCTATATGGGCTGGAGGAT+GGG 0.456683 2.3:-52194881 MS.gene84170:CDS
CATGGCCATGGCCGTGATCA+TGG 0.461736 2.3:+52194647 None:intergenic
GGTGCGCATCATCATGAGTA+TGG 0.464413 2.3:+52194479 None:intergenic
ATCACATCAGCGTCTGCTTC+AGG 0.464844 2.3:+52194043 None:intergenic
GGGGCATATCTCCACGTACT+TGG 0.471011 2.3:-52194364 MS.gene84170:CDS
AGATGCTACTCAGATTCAAA+AGG 0.472347 2.3:-52194164 MS.gene84170:CDS
GCCGACCCGAGAAGAAGAAA+CGG 0.483223 2.3:-52194402 MS.gene84170:CDS
AAGCACCAAGAATCTCTATT+CGG 0.486057 2.3:+52194827 None:intergenic
CCACTTCTTGGTGAATCAAA+AGG 0.490972 2.3:-52194424 MS.gene84170:CDS
CCATGTGAGTTCTCAGATGC+AGG 0.494225 2.3:-52195087 MS.gene84170:CDS
TCATATGGTATAAACCTGAA+TGG 0.495450 2.3:-52194300 MS.gene84170:CDS
CACATATGGGCCATTACAGT+GGG 0.495527 2.3:-52194100 MS.gene84170:CDS
AATTAATATGGCTGTTTGCT+GGG 0.498513 2.3:-52194792 MS.gene84170:CDS
CAATACCTTCCCCACTGTAA+TGG 0.500293 2.3:+52194090 None:intergenic
ATGTCCGTTGAGGTAGTTGG+TGG 0.504771 2.3:-52194985 MS.gene84170:CDS
AGCAGACGCTGATGTGATGC+TGG 0.509043 2.3:-52194038 MS.gene84170:CDS
GATGCTACTCAGATTCAAAA+GGG 0.519531 2.3:-52194163 MS.gene84170:CDS
CATGATCACGGCCATGGCCA+TGG 0.520047 2.3:-52194646 MS.gene84170:CDS
ACAAGGTCGTAGACTACATC+AGG 0.528566 2.3:-52194015 MS.gene84170:CDS
TCTCAGCATGTTGATAGTTG+TGG 0.528970 2.3:+52194228 None:intergenic
TCAAAAGGGGCTATTGGAGA+TGG 0.528979 2.3:-52194149 MS.gene84170:CDS
ATGATGCTCATCTGTATGCT+TGG 0.529964 2.3:+52194564 None:intergenic
TGATTTCAATTATTTGCCCA+TGG 0.531617 2.3:+52195154 None:intergenic
TTGGTATTGGGCCATGATCA+CGG 0.532393 2.3:-52194658 MS.gene84170:CDS
TTGGGCCATGATCACGGCCA+TGG 0.533606 2.3:-52194652 MS.gene84170:CDS
CTTTGTGGTCATGGTCATGA+TGG 0.535439 2.3:+52194458 None:intergenic
AGTTGCTGCATTTGGTCTTG+TGG 0.544560 2.3:-52194698 MS.gene84170:CDS
CGTGATCATGTCCATGGCCA+TGG 0.547666 2.3:+52194635 None:intergenic
CAATCATTACACCAATACTC+TGG 0.548068 2.3:+52194332 None:intergenic
TCCGTTTCTTCTTCTCGGGT+CGG 0.548332 2.3:+52194401 None:intergenic
ATGTAGGAAGGAAAATTTGT+GGG 0.548918 2.3:-52195116 MS.gene84170:CDS
GGACATGAAAATAACGCAAA+GGG 0.552650 2.3:+52195002 None:intergenic
GCAGGTCCTCAAGAAGTGGA+TGG 0.553959 2.3:-52194736 MS.gene84170:CDS
CAGGTCCTCAAGAAGTGGAT+GGG 0.559249 2.3:-52194735 MS.gene84170:CDS
GTGGTTCAGTAACCTCTTTG+TGG 0.561769 2.3:+52194443 None:intergenic
AGTGGAGAACTCCCTGATGT+AGG 0.568018 2.3:-52195132 MS.gene84170:CDS
AAACGGAACATAAATGTACA+TGG 0.573750 2.3:-52194385 MS.gene84170:CDS
TGTTCATGAGCTGCACATAT+GGG 0.573784 2.3:-52194113 MS.gene84170:CDS
CATTGCAGGTCCTCAAGAAG+TGG 0.575236 2.3:-52194740 MS.gene84170:CDS
GGAGACTCTATCCAGAGTAT+TGG 0.578371 2.3:-52194343 MS.gene84170:CDS
CATGGCCATGGACATGATCA+CGG 0.583188 2.3:-52194634 MS.gene84170:CDS
CATGGACATGATCACGGCCA+CGG 0.584750 2.3:-52194628 MS.gene84170:CDS
ATGGGCCATTACAGTGGGGA+AGG 0.591116 2.3:-52194095 MS.gene84170:CDS
GAGTATTGGTGTAATGATTG+GGG 0.591360 2.3:-52194329 MS.gene84170:CDS
GGGCAAATAATTGAAATCAG+TGG 0.595396 2.3:-52195150 MS.gene84170:CDS
CCATATAGAAAATAAGGAGA+TGG 0.595760 2.3:+52194894 None:intergenic
CGCTGATGTGATGCTGGACA+AGG 0.600547 2.3:-52194032 MS.gene84170:CDS
ACCTGCAATGAGTCTAGCAA+TGG 0.601692 2.3:+52194753 None:intergenic
ATTGGAGATGGAAGAAGTAG+TGG 0.601966 2.3:-52194137 MS.gene84170:CDS
AAACTGAAATACCATGGCTG+TGG 0.606255 2.3:+52194590 None:intergenic
CGTGGCCGTGATCATGTCCA+TGG 0.606876 2.3:+52194629 None:intergenic
GAGAACTCCCTGATGTAGGA+AGG 0.609906 2.3:-52195128 MS.gene84170:CDS
AAGCACAAAGTGGTCACCAT+GGG 0.612715 2.3:-52195170 MS.gene84170:CDS
GATGTAGGAAGGAAAATTTG+TGG 0.619238 2.3:-52195117 MS.gene84170:CDS
AACGGAACATAAATGTACAT+GGG 0.622867 2.3:-52194384 MS.gene84170:CDS
GGCCACGGACATGATCATCA+TGG 0.626939 2.3:-52194613 MS.gene84170:CDS
TTTCGAAGGATTCTGAAGAA+CGG 0.630672 2.3:-52195059 MS.gene84170:CDS
CCTGCATCTGAGAACTCACA+TGG 0.630931 2.3:+52195087 None:intergenic
AGATGCAGGATCTATTTCGA+AGG 0.632610 2.3:-52195073 MS.gene84170:CDS
GCACATATGGGCCATTACAG+TGG 0.634593 2.3:-52194101 MS.gene84170:CDS
CGGACATGAAAATAACGCAA+AGG 0.635615 2.3:+52195001 None:intergenic
AATACCACCAACTACCTCAA+CGG 0.636394 2.3:+52194981 None:intergenic
GAAGCACAAAGTGGTCACCA+TGG 0.639833 2.3:-52195171 MS.gene84170:CDS
GCGAAAGCTTCTGATAGCAG+TGG 0.645701 2.3:-52195025 MS.gene84170:CDS
TCATGACCATGACCACAAAG+AGG 0.650002 2.3:-52194455 MS.gene84170:CDS
GATCATCATGGCCACAGCCA+TGG 0.655433 2.3:-52194601 MS.gene84170:CDS
TGAGTAGCATCTATCTCGCG+TGG 0.657042 2.3:+52194175 None:intergenic
GGATAGAGTCTCCAAGTACG+TGG 0.658730 2.3:+52194353 None:intergenic
AGGTCGTAGACTACATCAGG+AGG 0.671694 2.3:-52194012 MS.gene84170:CDS
ATGCTACTCAGATTCAAAAG+GGG 0.673395 2.3:-52194162 MS.gene84170:CDS
ACGGAACATAAATGTACATG+GGG 0.674674 2.3:-52194383 MS.gene84170:CDS
TTGCAGATGGAAGCACAAAG+TGG 0.690821 2.3:-52195180 None:intergenic
TGTAGGAAGGAAAATTTGTG+GGG 0.696003 2.3:-52195115 MS.gene84170:CDS
GATGAGCATCATCACACACA+TGG 0.698036 2.3:-52194553 MS.gene84170:CDS
AGTATTGGTGTAATGATTGG+GGG 0.700635 2.3:-52194328 MS.gene84170:CDS
TGGTAGAAACTGAAATACCA+TGG 0.701092 2.3:+52194584 None:intergenic
GGCCATGATGATCATGTCCG+TGG 0.701854 2.3:+52194611 None:intergenic
GCGCATCATCATGAGTATGG+TGG 0.706117 2.3:+52194482 None:intergenic
GGTCGTAGACTACATCAGGA+GGG 0.723067 2.3:-52194011 MS.gene84170:CDS
ACATATGGGCCATTACAGTG+GGG 0.768745 2.3:-52194099 MS.gene84170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGGTTTCTATGCAATTAATA+TGG - chr2.3:52194340-52194359 MS.gene84170:CDS 25.0%
!! AATCTTTTCTGTAATTGTCT+TGG - chr2.3:52194893-52194912 MS.gene84170:CDS 25.0%
!!! CATCTCCTTATTTTCTATAT+GGG - chr2.3:52194251-52194270 MS.gene84170:CDS 25.0%
AAACGGAACATAAATGTACA+TGG - chr2.3:52194759-52194778 MS.gene84170:CDS 30.0%
AACGGAACATAAATGTACAT+GGG - chr2.3:52194760-52194779 MS.gene84170:CDS 30.0%
AATTAATATGGCTGTTTGCT+GGG - chr2.3:52194352-52194371 MS.gene84170:CDS 30.0%
ATGTAGGAAGGAAAATTTGT+GGG - chr2.3:52194028-52194047 MS.gene84170:CDS 30.0%
CCATATAGAAAATAAGGAGA+TGG + chr2.3:52194253-52194272 None:intergenic 30.0%
TCATATGGTATAAACCTGAA+TGG - chr2.3:52194844-52194863 MS.gene84170:CDS 30.0%
TGATTTCAATTATTTGCCCA+TGG + chr2.3:52193993-52194012 None:intergenic 30.0%
! AAATCGACTATTTTCCATTC+AGG + chr2.3:52194861-52194880 None:intergenic 30.0%
! AAATTTTCCTTCCTACATCA+GGG + chr2.3:52194026-52194045 None:intergenic 30.0%
! AATGCTTTTCATCATCATGA+TGG + chr2.3:52194629-52194648 None:intergenic 30.0%
! TTTTTCCGAATAGAGATTCT+TGG - chr2.3:52194312-52194331 MS.gene84170:CDS 30.0%
!! AGAGTATTGGTGTAATGATT+GGG - chr2.3:52194814-52194833 MS.gene84170:CDS 30.0%
!! ATCATTATGGCTTTGGTATT+GGG - chr2.3:52194474-52194493 MS.gene84170:CDS 30.0%
!!! CCATCTCCTTATTTTCTATA+TGG - chr2.3:52194250-52194269 MS.gene84170:CDS 30.0%
AAAAATCCAAATGACTGACG+AGG + chr2.3:52194297-52194316 None:intergenic 35.0%
AAGCACCAAGAATCTCTATT+CGG + chr2.3:52194320-52194339 None:intergenic 35.0%
ACGGAACATAAATGTACATG+GGG - chr2.3:52194761-52194780 MS.gene84170:CDS 35.0%
AGATGCTACTCAGATTCAAA+AGG - chr2.3:52194980-52194999 MS.gene84170:CDS 35.0%
ATGCTACTCAGATTCAAAAG+GGG - chr2.3:52194982-52195001 MS.gene84170:CDS 35.0%
ATGTTTGTAGTTGCTGCATT+TGG - chr2.3:52194438-52194457 MS.gene84170:CDS 35.0%
CAATCATTACACCAATACTC+TGG + chr2.3:52194815-52194834 None:intergenic 35.0%
CAATTAATATGGCTGTTTGC+TGG - chr2.3:52194351-52194370 MS.gene84170:CDS 35.0%
GATGCTACTCAGATTCAAAA+GGG - chr2.3:52194981-52195000 MS.gene84170:CDS 35.0%
GATGTAGGAAGGAAAATTTG+TGG - chr2.3:52194027-52194046 MS.gene84170:CDS 35.0%
GGACATGAAAATAACGCAAA+GGG + chr2.3:52194145-52194164 None:intergenic 35.0%
GGGCAAATAATTGAAATCAG+TGG - chr2.3:52193994-52194013 MS.gene84170:CDS 35.0%
TATGTTCCGTTTCTTCTTCT+CGG + chr2.3:52194751-52194770 None:intergenic 35.0%
TCCAGCCCATATAGAAAATA+AGG + chr2.3:52194259-52194278 None:intergenic 35.0%
TCTTGTGGTGAACATCATTA+TGG - chr2.3:52194461-52194480 MS.gene84170:CDS 35.0%
TGGTAGAAACTGAAATACCA+TGG + chr2.3:52194563-52194582 None:intergenic 35.0%
TGTAGGAAGGAAAATTTGTG+GGG - chr2.3:52194029-52194048 MS.gene84170:CDS 35.0%
! AAACATTCTGGAAGTCTTGA+TGG - chr2.3:52194938-52194957 MS.gene84170:CDS 35.0%
! CAAATTTTCCTTCCTACATC+AGG + chr2.3:52194027-52194046 None:intergenic 35.0%
! TTTCGAAGGATTCTGAAGAA+CGG - chr2.3:52194085-52194104 MS.gene84170:CDS 35.0%
!! AATAGAGATTCTTGGTGCTT+TGG - chr2.3:52194320-52194339 MS.gene84170:CDS 35.0%
!! AGTATTGGTGTAATGATTGG+GGG - chr2.3:52194816-52194835 MS.gene84170:CDS 35.0%
!! CAGAGTATTGGTGTAATGAT+TGG - chr2.3:52194813-52194832 MS.gene84170:CDS 35.0%
!! CATCATTATGGCTTTGGTAT+TGG - chr2.3:52194473-52194492 MS.gene84170:CDS 35.0%
!! GAGTATTGGTGTAATGATTG+GGG - chr2.3:52194815-52194834 MS.gene84170:CDS 35.0%
!!! TCCTTATTTTCTATATGGGC+TGG - chr2.3:52194255-52194274 MS.gene84170:CDS 35.0%
!!! TTATTTTCTATATGGGCTGG+AGG - chr2.3:52194258-52194277 MS.gene84170:CDS 35.0%
AAAAACCCATCCACTTCTTG+AGG + chr2.3:52194417-52194436 None:intergenic 40.0%
AAACTGAAATACCATGGCTG+TGG + chr2.3:52194557-52194576 None:intergenic 40.0%
AATACCACCAACTACCTCAA+CGG + chr2.3:52194166-52194185 None:intergenic 40.0%
AGATGCAGGATCTATTTCGA+AGG - chr2.3:52194071-52194090 MS.gene84170:CDS 40.0%
ATGATGCTCATCTGTATGCT+TGG + chr2.3:52194583-52194602 None:intergenic 40.0%
ATGTTCCGTTTCTTCTTCTC+GGG + chr2.3:52194750-52194769 None:intergenic 40.0%
ATTGGAGATGGAAGAAGTAG+TGG - chr2.3:52195007-52195026 MS.gene84170:CDS 40.0%
CAACATGCTGAGAAACATTC+TGG - chr2.3:52194926-52194945 MS.gene84170:CDS 40.0%
CCACTTCTTGGTGAATCAAA+AGG - chr2.3:52194720-52194739 MS.gene84170:CDS 40.0%
CGGACATGAAAATAACGCAA+AGG + chr2.3:52194146-52194165 None:intergenic 40.0%
GGTGAACATCATTATGGCTT+TGG - chr2.3:52194467-52194486 MS.gene84170:CDS 40.0%
TCAGATTCAAAAGGGGCTAT+TGG - chr2.3:52194989-52195008 MS.gene84170:CDS 40.0%
TGTTCATGAGCTGCACATAT+GGG - chr2.3:52195031-52195050 MS.gene84170:CDS 40.0%
!! CCTTTTGATTCACCAAGAAG+TGG + chr2.3:52194723-52194742 None:intergenic 40.0%
!! CGTTATTTTCATGTCCGTTG+AGG - chr2.3:52194149-52194168 MS.gene84170:CDS 40.0%
!! TCTCAGCATGTTGATAGTTG+TGG + chr2.3:52194919-52194938 None:intergenic 40.0%
!! TGAGGTAGTTGGTGGTATTA+AGG - chr2.3:52194167-52194186 MS.gene84170:CDS 40.0%
AAGCACAAAGTGGTCACCAT+GGG - chr2.3:52193974-52193993 MS.gene84170:CDS 45.0%
ACAAGGTCGTAGACTACATC+AGG - chr2.3:52195129-52195148 MS.gene84170:CDS 45.0%
ACATATGGGCCATTACAGTG+GGG - chr2.3:52195045-52195064 MS.gene84170:CDS 45.0%
ACCTGCAATGAGTCTAGCAA+TGG + chr2.3:52194394-52194413 None:intergenic 45.0%
CAATACCTTCCCCACTGTAA+TGG + chr2.3:52195057-52195076 None:intergenic 45.0%
CACATATGGGCCATTACAGT+GGG - chr2.3:52195044-52195063 MS.gene84170:CDS 45.0%
CAGTAACCTCTTTGTGGTCA+TGG + chr2.3:52194698-52194717 None:intergenic 45.0%
CCAAATGACTGACGAGGATT+CGG + chr2.3:52194291-52194310 None:intergenic 45.0%
CTGTTCATGAGCTGCACATA+TGG - chr2.3:52195030-52195049 MS.gene84170:CDS 45.0%
CTTTGTGGTCATGGTCATGA+TGG + chr2.3:52194689-52194708 None:intergenic 45.0%
GAGGTTACTGAACCACTTCT+TGG - chr2.3:52194708-52194727 MS.gene84170:CDS 45.0%
GATGAGCATCATCACACACA+TGG - chr2.3:52194591-52194610 MS.gene84170:CDS 45.0%
GGAGACTCTATCCAGAGTAT+TGG - chr2.3:52194801-52194820 MS.gene84170:CDS 45.0%
GTGGTTCAGTAACCTCTTTG+TGG + chr2.3:52194704-52194723 None:intergenic 45.0%
TCAAAAGGGGCTATTGGAGA+TGG - chr2.3:52194995-52195014 MS.gene84170:CDS 45.0%
TCATGACCATGACCACAAAG+AGG - chr2.3:52194689-52194708 MS.gene84170:CDS 45.0%
TGATTGGGGGAGCAATCATA+TGG - chr2.3:52194829-52194848 MS.gene84170:CDS 45.0%
TTCATGTCCGTTGAGGTAGT+TGG - chr2.3:52194156-52194175 MS.gene84170:CDS 45.0%
! TTGGTATTGGGCCATGATCA+CGG - chr2.3:52194486-52194505 MS.gene84170:CDS 45.0%
!! AGTTGCTGCATTTGGTCTTG+TGG - chr2.3:52194446-52194465 MS.gene84170:CDS 45.0%
!! TTCTATATGGGCTGGAGGAT+GGG - chr2.3:52194263-52194282 MS.gene84170:CDS 45.0%
!! TTTCTATATGGGCTGGAGGA+TGG - chr2.3:52194262-52194281 MS.gene84170:CDS 45.0%
AGGTCGTAGACTACATCAGG+AGG - chr2.3:52195132-52195151 MS.gene84170:CDS 50.0%
AGTGGAGAACTCCCTGATGT+AGG - chr2.3:52194012-52194031 MS.gene84170:CDS 50.0%
ATCACATCAGCGTCTGCTTC+AGG + chr2.3:52195104-52195123 None:intergenic 50.0%
ATGTCCGTTGAGGTAGTTGG+TGG - chr2.3:52194159-52194178 MS.gene84170:CDS 50.0%
CAGGTCCTCAAGAAGTGGAT+GGG - chr2.3:52194409-52194428 MS.gene84170:CDS 50.0%
CATGGCCATGGACATGATCA+CGG - chr2.3:52194510-52194529 MS.gene84170:CDS 50.0%
CATTGCAGGTCCTCAAGAAG+TGG - chr2.3:52194404-52194423 MS.gene84170:CDS 50.0%
CCATGTGAGTTCTCAGATGC+AGG - chr2.3:52194057-52194076 MS.gene84170:CDS 50.0%
CCGAATCCTCGTCAGTCATT+TGG - chr2.3:52194288-52194307 MS.gene84170:CDS 50.0%
CCTGCATCTGAGAACTCACA+TGG + chr2.3:52194060-52194079 None:intergenic 50.0%
GAAGCACAAAGTGGTCACCA+TGG - chr2.3:52193973-52193992 MS.gene84170:CDS 50.0%
GAGAACTCCCTGATGTAGGA+AGG - chr2.3:52194016-52194035 MS.gene84170:CDS 50.0%
GCACATATGGGCCATTACAG+TGG - chr2.3:52195043-52195062 MS.gene84170:CDS 50.0%
GCCATTGCTAGACTCATTGC+AGG - chr2.3:52194390-52194409 MS.gene84170:CDS 50.0%
GCGAAAGCTTCTGATAGCAG+TGG - chr2.3:52194119-52194138 MS.gene84170:CDS 50.0%
GCGCATCATCATGAGTATGG+TGG + chr2.3:52194665-52194684 None:intergenic 50.0%
GGATAGAGTCTCCAAGTACG+TGG + chr2.3:52194794-52194813 None:intergenic 50.0%
GGTCGTAGACTACATCAGGA+GGG - chr2.3:52195133-52195152 MS.gene84170:CDS 50.0%
GGTGCGCATCATCATGAGTA+TGG + chr2.3:52194668-52194687 None:intergenic 50.0%
TCCGTTTCTTCTTCTCGGGT+CGG + chr2.3:52194746-52194765 None:intergenic 50.0%
TGAGTAGCATCTATCTCGCG+TGG + chr2.3:52194972-52194991 None:intergenic 50.0%
AGCAGACGCTGATGTGATGC+TGG - chr2.3:52195106-52195125 MS.gene84170:CDS 55.0%
ATGGGCCATTACAGTGGGGA+AGG - chr2.3:52195049-52195068 MS.gene84170:CDS 55.0%
CATGGACATGATCACGGCCA+CGG - chr2.3:52194516-52194535 MS.gene84170:CDS 55.0%
CGCTGATGTGATGCTGGACA+AGG - chr2.3:52195112-52195131 MS.gene84170:CDS 55.0%
CGTGATCATGTCCATGGCCA+TGG + chr2.3:52194512-52194531 None:intergenic 55.0%
GATCATCATGGCCACAGCCA+TGG - chr2.3:52194543-52194562 MS.gene84170:CDS 55.0%
GCAGGTCCTCAAGAAGTGGA+TGG - chr2.3:52194408-52194427 MS.gene84170:CDS 55.0%
GCCGACCCGAGAAGAAGAAA+CGG - chr2.3:52194742-52194761 MS.gene84170:CDS 55.0%
GGCCACGGACATGATCATCA+TGG - chr2.3:52194531-52194550 MS.gene84170:CDS 55.0%
GGCCATGATGATCATGTCCG+TGG + chr2.3:52194536-52194555 None:intergenic 55.0%
GGGGCATATCTCCACGTACT+TGG - chr2.3:52194780-52194799 MS.gene84170:CDS 55.0%
CATGATCACGGCCATGGCCA+TGG - chr2.3:52194498-52194517 MS.gene84170:CDS 60.0%
CATGGCCATGGCCGTGATCA+TGG + chr2.3:52194500-52194519 None:intergenic 60.0%
CGTGGCCGTGATCATGTCCA+TGG + chr2.3:52194518-52194537 None:intergenic 60.0%
TTGGGCCATGATCACGGCCA+TGG - chr2.3:52194492-52194511 MS.gene84170:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 52193970 52195196 52193970 ID=MS.gene84170
chr2.3 mRNA 52193970 52195196 52193970 ID=MS.gene84170.t1;Parent=MS.gene84170
chr2.3 exon 52193970 52195196 52193970 ID=MS.gene84170.t1.exon1;Parent=MS.gene84170.t1
chr2.3 CDS 52193970 52195196 52193970 ID=cds.MS.gene84170.t1;Parent=MS.gene84170.t1
Gene Sequence

>MS.gene84170

ATGGAAGCACAAAGTGGTCACCATGGGCAAATAATTGAAATCAGTGGAGAACTCCCTGATGTAGGAAGGAAAATTTGTGGGGAAGCACCATGTGAGTTCTCAGATGCAGGATCTATTTCGAAGGATTCTGAAGAACGGTCAACTTCTATGCGAAAGCTTCTGATAGCAGTGGCCCTTTGCGTTATTTTCATGTCCGTTGAGGTAGTTGGTGGTATTAAGGCTAACAGTCTTGCAATATTGACTGATGCAGCACATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCCTTATTTTCTATATGGGCTGGAGGATGGGAACCGAATCCTCGTCAGTCATTTGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATGCAATTAATATGGCTGTTTGCTGGGATTCTTGTATATGAAGCCATTGCTAGACTCATTGCAGGTCCTCAAGAAGTGGATGGGTTTTTAATGTTTGTAGTTGCTGCATTTGGTCTTGTGGTGAACATCATTATGGCTTTGGTATTGGGCCATGATCACGGCCATGGCCATGGACATGATCACGGCCACGGACATGATCATCATGGCCACAGCCATGGTATTTCAGTTTCTACCAAGCATACAGATGAGCATCATCACACACATGGCGATCAGACTCACCATCATGATGATGAAAAGCATTCGAAAGATGAACACCACCATACTCATGATGATGCGCACCATCATGACCATGACCACAAAGAGGTTACTGAACCACTTCTTGGTGAATCAAAAGGCCGACCCGAGAAGAAGAAACGGAACATAAATGTACATGGGGCATATCTCCACGTACTTGGAGACTCTATCCAGAGTATTGGTGTAATGATTGGGGGAGCAATCATATGGTATAAACCTGAATGGAAAATAGTCGATTTGATTTGCACTCTAATCTTTTCTGTAATTGTCTTGGCCACAACTATCAACATGCTGAGAAACATTCTGGAAGTCTTGATGGAAAGCACACCACGCGAGATAGATGCTACTCAGATTCAAAAGGGGCTATTGGAGATGGAAGAAGTAGTGGCTGTTCATGAGCTGCACATATGGGCCATTACAGTGGGGAAGGTATTGCTAGCTTGTCATGTTAAAGTCATTCCTGAAGCAGACGCTGATGTGATGCTGGACAAGGTCGTAGACTACATCAGGAGGGTTCATAACATTAGTCATGTAACTATTCAGATAGAACGCTAA
Protein sequence

>MS.gene84170.t1

MEAQSGHHGQIIEISGELPDVGRKICGEAPCEFSDAGSISKDSEERSTSMRKLLIAVALCVIFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSIWAGGWEPNPRQSFGFFRIEILGALVSMQLIWLFAGILVYEAIARLIAGPQEVDGFLMFVVAAFGLVVNIIMALVLGHDHGHGHGHDHGHGHDHHGHSHGISVSTKHTDEHHHTHGDQTHHHDDEKHSKDEHHHTHDDAHHHDHDHKEVTEPLLGESKGRPEKKKRNINVHGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLATTINMLRNILEVLMESTPREIDATQIQKGLLEMEEVVAVHELHIWAITVGKVLLACHVKVIPEADADVMLDKVVDYIRRVHNISHVTIQIER