Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08515.t1 | XP_013444540.1 | 95.2 | 394 | 10 | 2 | 1 | 394 | 1 | 385 | 1.60E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08515.t1 | Q9ZT63 | 78.9 | 403 | 71 | 3 | 1 | 394 | 1 | 398 | 5.7e-137 | 488.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08515.t1 | A0A072TYD5 | 95.2 | 394 | 10 | 2 | 1 | 394 | 1 | 385 | 1.2e-167 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060477 | MS.gene08515 | 0.896751 | 2.73E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08515 | MS.gene015707 | PPI |
| MS.gene08515 | MS.gene05860 | PPI |
| MS.gene08515 | MS.gene05859 | PPI |
| MS.gene08515 | MS.gene028573 | PPI |
| MS.gene08515 | MS.gene05970 | PPI |
| MS.gene05971 | MS.gene08515 | PPI |
| MS.gene08515 | MS.gene020531 | PPI |
| MS.gene08515 | MS.gene40160 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08515.t1 | MTR_8g024240 | 95.431 | 394 | 9 | 2 | 1 | 394 | 1 | 385 | 0.0 | 749 |
| MS.gene08515.t1 | MTR_2g036390 | 76.923 | 416 | 65 | 3 | 1 | 394 | 1 | 407 | 0.0 | 575 |
| MS.gene08515.t1 | MTR_4g064893 | 48.603 | 358 | 175 | 3 | 42 | 393 | 40 | 394 | 5.48e-100 | 302 |
| MS.gene08515.t1 | MTR_6g463330 | 33.333 | 108 | 69 | 2 | 45 | 152 | 421 | 525 | 9.58e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08515.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene08515.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene08515.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene08515.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene08515.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene08515.t1 | AT3G58810 | 68.280 | 372 | 95 | 2 | 23 | 394 | 44 | 392 | 9.30e-168 | 475 |
| MS.gene08515.t1 | AT3G58810 | 64.500 | 400 | 113 | 3 | 1 | 394 | 55 | 431 | 1.26e-167 | 476 |
| MS.gene08515.t1 | AT3G61940 | 64.191 | 377 | 89 | 5 | 20 | 394 | 2 | 334 | 3.07e-152 | 433 |
| MS.gene08515.t1 | AT2G29410 | 44.578 | 166 | 90 | 1 | 13 | 176 | 16 | 181 | 1.68e-44 | 158 |
| MS.gene08515.t1 | AT2G04620 | 28.497 | 386 | 223 | 8 | 33 | 367 | 386 | 769 | 2.25e-34 | 135 |
| MS.gene08515.t1 | AT2G04620 | 29.412 | 374 | 223 | 9 | 33 | 367 | 218 | 589 | 2.15e-32 | 129 |
| MS.gene08515.t1 | AT1G33020 | 58.621 | 58 | 20 | 1 | 337 | 394 | 491 | 544 | 1.85e-12 | 69.3 |
Find 83 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATGTTCCTCTTCTTCT+TGG | 0.153720 | 8.3:-68159891 | None:intergenic |
| CCGCAAGCAGCCATATTAAT+TGG | 0.265618 | 8.3:-68159532 | None:intergenic |
| ATCATTATGGCTGTGTTATT+AGG | 0.275823 | 8.3:+68159656 | MS.gene08515:CDS |
| CTGTTCATGAGCTTCACATT+TGG | 0.282555 | 8.3:+68160170 | MS.gene08515:CDS |
| TGTTCATGAGCTTCACATTT+GGG | 0.294250 | 8.3:+68160171 | MS.gene08515:CDS |
| TAGTGTCTATCCAATTAATA+TGG | 0.295359 | 8.3:+68159522 | MS.gene08515:CDS |
| TCAGCTTGAAAAGGGGATAT+TGG | 0.326926 | 8.3:+68160129 | MS.gene08515:CDS |
| CAATTAATATGGCTGCTTGC+GGG | 0.339016 | 8.3:+68159533 | MS.gene08515:CDS |
| TTCTTTATGGGCTGCGGGAT+GGG | 0.345119 | 8.3:+68159445 | MS.gene08515:CDS |
| TCTTGTGGTTAACATCATTA+TGG | 0.346550 | 8.3:+68159643 | MS.gene08515:CDS |
| CCGCGATGCCGATGCAGAAA+TGG | 0.394198 | 8.3:+68160240 | MS.gene08515:CDS |
| GCTACTCCTCGCCAGTCGTA+TGG | 0.416422 | 8.3:+68159470 | MS.gene08515:CDS |
| CAAAGTATTGGAGTAATGAT+TGG | 0.429651 | 8.3:+68159953 | MS.gene08515:CDS |
| CAATCATTACTCCAATACTT+TGG | 0.433927 | 8.3:-68159952 | None:intergenic |
| CAAATCTTCCTTCCAGCATC+AGG | 0.435707 | 8.3:-68159206 | None:intergenic |
| CACATTTGGGCCATTACAGT+TGG | 0.444553 | 8.3:+68160184 | MS.gene08515:CDS |
| TGCCGATGCAGAAATGGTCT+TGG | 0.445950 | 8.3:+68160246 | MS.gene08515:CDS |
| TGATGCTACTCAGCTTGAAA+AGG | 0.447061 | 8.3:+68160120 | MS.gene08515:CDS |
| AACGCAGATCTTCCTGATGC+TGG | 0.451107 | 8.3:+68159194 | MS.gene08515:CDS |
| TGATTCACCGATAAGTGGTT+CGG | 0.460837 | 8.3:-68159858 | None:intergenic |
| TTTCTTTATGGGCTGCGGGA+TGG | 0.463688 | 8.3:+68159444 | MS.gene08515:CDS |
| GCCATTGATAGACTCATTGC+CGG | 0.464636 | 8.3:+68159572 | MS.gene08515:CDS |
| CAAAATCTTCCCAACTGTAA+TGG | 0.466674 | 8.3:-68160194 | None:intergenic |
| CCATGTGGATTCTCAGATGC+TGG | 0.472337 | 8.3:+68159239 | MS.gene08515:CDS |
| ATGACTGTTGAACTGGTTGG+TGG | 0.480251 | 8.3:+68159341 | MS.gene08515:CDS |
| GATGCTACTCAGCTTGAAAA+GGG | 0.481257 | 8.3:+68160121 | MS.gene08515:CDS |
| TTCTTTAGAATCGTTAGAGA+TGG | 0.488494 | 8.3:-68159264 | None:intergenic |
| GGTGTTACCGAACCACTTAT+CGG | 0.489345 | 8.3:+68159851 | MS.gene08515:CDS |
| AATTAATATGGCTGCTTGCG+GGG | 0.503347 | 8.3:+68159534 | MS.gene08515:CDS |
| GGATAGAGTCGCCGAGTACA+TGG | 0.506706 | 8.3:-68159931 | None:intergenic |
| CTACTCCTCGCCAGTCGTAT+GGG | 0.515170 | 8.3:+68159471 | MS.gene08515:CDS |
| GTCCAAGACCATTTCTGCAT+CGG | 0.516842 | 8.3:-68160248 | None:intergenic |
| GGCGACTCTATCCAAAGTAT+TGG | 0.525010 | 8.3:+68159941 | MS.gene08515:CDS |
| ACATTTGGGCCATTACAGTT+GGG | 0.528212 | 8.3:+68160185 | MS.gene08515:CDS |
| AGTTGCTGCATTTGGTCTTG+TGG | 0.528547 | 8.3:+68159628 | MS.gene08515:CDS |
| AAAGGGGATATTGGAGATGG+AGG | 0.528785 | 8.3:+68160138 | MS.gene08515:CDS |
| TGACTGTTGAACTGGTTGGT+GGG | 0.528847 | 8.3:+68159342 | MS.gene08515:CDS |
| ATGCGCACAGCTCTCAGCAC+GGG | 0.529246 | 8.3:+68159156 | MS.gene08515:CDS |
| TGATTGGAGGAGCAGTCATA+TGG | 0.529348 | 8.3:+68159969 | MS.gene08515:CDS |
| TTCATGACTGTTGAACTGGT+TGG | 0.537554 | 8.3:+68159338 | MS.gene08515:CDS |
| GACCACGGACATGGTCATCA+TGG | 0.538513 | 8.3:+68159731 | MS.gene08515:CDS |
| CGCAGCCCATAAAGAAAACA+AGG | 0.541633 | 8.3:-68159438 | None:intergenic |
| TGATGCTGCACATCTTCTCT+CGG | 0.546138 | 8.3:+68159394 | MS.gene08515:CDS |
| TCATATGGTATAAACCAGAA+TGG | 0.551207 | 8.3:+68159984 | MS.gene08515:CDS |
| ATTGGAGATGGAGGAAGTAG+TGG | 0.552789 | 8.3:+68160147 | MS.gene08515:CDS |
| TGCAGAAATGGTCTTGGACA+AGG | 0.558212 | 8.3:+68160252 | MS.gene08515:CDS |
| ACCGGCAATGAGTCTATCAA+TGG | 0.559996 | 8.3:-68159573 | None:intergenic |
| TGAAAAGGGGATATTGGAGA+TGG | 0.560441 | 8.3:+68160135 | MS.gene08515:CDS |
| GCCGGTCCTCAAAATGTGGA+TGG | 0.562681 | 8.3:+68159590 | MS.gene08515:CDS |
| GATGCGCACAGCTCTCAGCA+CGG | 0.572499 | 8.3:+68159155 | MS.gene08515:CDS |
| CCAATTAATATGGCTGCTTG+CGG | 0.573913 | 8.3:+68159532 | MS.gene08515:CDS |
| CATTGCCGGTCCTCAAAATG+TGG | 0.576379 | 8.3:+68159586 | MS.gene08515:CDS |
| CACGGTCATGATCACGGCCA+TGG | 0.576823 | 8.3:+68159698 | MS.gene08515:CDS |
| TTAGGTCATGATCACGGCCA+TGG | 0.578885 | 8.3:+68159674 | MS.gene08515:CDS |
| CAGATCTTCCTGATGCTGGA+AGG | 0.583756 | 8.3:+68159198 | MS.gene08515:CDS |
| TTCGATGCGAAAGCTTATGA+TGG | 0.585844 | 8.3:+68159295 | MS.gene08515:CDS |
| AGTATTGGAGTAATGATTGG+AGG | 0.590084 | 8.3:+68159956 | MS.gene08515:CDS |
| CATGATCACGGCCATGGTCA+CGG | 0.600715 | 8.3:+68159680 | MS.gene08515:CDS |
| AGAGGAACATAAATGTGCAA+GGG | 0.601512 | 8.3:+68159900 | MS.gene08515:CDS |
| CATGGTCACGGTCATGATCA+CGG | 0.602486 | 8.3:+68159692 | MS.gene08515:CDS |
| CATGATCACGGCCATGGTCA+CGG | 0.602707 | 8.3:+68159704 | MS.gene08515:CDS |
| AAGAGGAACATAAATGTGCA+AGG | 0.606363 | 8.3:+68159899 | MS.gene08515:CDS |
| ATTCACCATCACGCACATGA+AGG | 0.615684 | 8.3:+68159830 | MS.gene08515:CDS |
| CACGGTCATGACCACGGACA+TGG | 0.619001 | 8.3:+68159722 | MS.gene08515:CDS |
| GAGGAACATAAATGTGCAAG+GGG | 0.624945 | 8.3:+68159901 | MS.gene08515:CDS |
| GATGCTGGAAGGAAGATTTG+TGG | 0.628927 | 8.3:+68159209 | MS.gene08515:CDS |
| GGGGCTTATCTCCATGTACT+CGG | 0.633375 | 8.3:+68159920 | MS.gene08515:CDS |
| CGTGGTCATGACCGTGACCA+TGG | 0.633589 | 8.3:-68159715 | None:intergenic |
| TGTGATCTTCATGAGTATGA+TGG | 0.636300 | 8.3:-68159808 | None:intergenic |
| CGTGATCATGACCGTGACCA+TGG | 0.646434 | 8.3:-68159691 | None:intergenic |
| AAACTGTAAGTCCGTGACTG+TGG | 0.653391 | 8.3:-68159754 | None:intergenic |
| GTGTTATTAGGTCATGATCA+CGG | 0.662294 | 8.3:+68159668 | MS.gene08515:CDS |
| ATGCTACTCAGCTTGAAAAG+GGG | 0.663099 | 8.3:+68160122 | MS.gene08515:CDS |
| GGTCATCATGGCCACAGTCA+CGG | 0.667903 | 8.3:+68159743 | MS.gene08515:CDS |
| CATGGTCACGGTCATGACCA+CGG | 0.670414 | 8.3:+68159716 | MS.gene08515:CDS |
| TGAGTAGCATCAATCTCGCG+AGG | 0.676529 | 8.3:-68160109 | None:intergenic |
| TAACACCTTCATGTGCGTGA+TGG | 0.678047 | 8.3:-68159835 | None:intergenic |
| CCAGCATCTGAGAATCCACA+TGG | 0.679240 | 8.3:-68159239 | None:intergenic |
| GGCCATGATGACCATGTCCG+TGG | 0.689643 | 8.3:-68159733 | None:intergenic |
| ATTTGTGGTGAAGCACCATG+TGG | 0.697709 | 8.3:+68159224 | MS.gene08515:CDS |
| CCATTTCTGCATCGGCATCG+CGG | 0.700086 | 8.3:-68160240 | None:intergenic |
| CAGTCATGAAAATCACACAC+AGG | 0.700380 | 8.3:-68159325 | None:intergenic |
| GATCTTCATGAGTATGATGG+TGG | 0.722381 | 8.3:-68159805 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TAGTGTCTATCCAATTAATA+TGG | + | chr8.3:68159522-68159541 | MS.gene08515:CDS | 25.0% |
| !! | AAATCAACTATTTTCCATTC+TGG | - | chr8.3:68160001-68160020 | None:intergenic | 25.0% |
| !! | AATTTGCACTCTATTCTTTT+CGG | + | chr8.3:68160021-68160040 | MS.gene08515:CDS | 25.0% |
| !!! | TAACATTTTAGAAGTTCTGA+TGG | + | chr8.3:68160078-68160097 | MS.gene08515:CDS | 25.0% |
| !!! | TATCTCCTTGTTTTCTTTAT+GGG | + | chr8.3:68159433-68159452 | MS.gene08515:CDS | 25.0% |
| !!! | TTTTTCAGAATAGAGATTCT+CGG | + | chr8.3:68159494-68159513 | MS.gene08515:CDS | 25.0% |
| AAGAAAAATCCAAGAAGAAG+AGG | + | chr8.3:68159882-68159901 | MS.gene08515:CDS | 30.0% | |
| ATTTATGTTCCTCTTCTTCT+TGG | - | chr8.3:68159894-68159913 | None:intergenic | 30.0% | |
| CAATCATTACTCCAATACTT+TGG | - | chr8.3:68159955-68159974 | None:intergenic | 30.0% | |
| TCATATGGTATAAACCAGAA+TGG | + | chr8.3:68159984-68160003 | MS.gene08515:CDS | 30.0% | |
| TCTTGTGGTTAACATCATTA+TGG | + | chr8.3:68159643-68159662 | MS.gene08515:CDS | 30.0% | |
| ! | AAAAAACCATCCACATTTTG+AGG | - | chr8.3:68159599-68159618 | None:intergenic | 30.0% |
| ! | ATCATTATGGCTGTGTTATT+AGG | + | chr8.3:68159656-68159675 | MS.gene08515:CDS | 30.0% |
| ! | ATTCTTTTCGGCAATTGTTT+TGG | + | chr8.3:68160033-68160052 | MS.gene08515:CDS | 30.0% |
| ! | TTCTTTTCGGCAATTGTTTT+GGG | + | chr8.3:68160034-68160053 | MS.gene08515:CDS | 30.0% |
| !! | CAAAGTATTGGAGTAATGAT+TGG | + | chr8.3:68159953-68159972 | MS.gene08515:CDS | 30.0% |
| !! | TTCTTTAGAATCGTTAGAGA+TGG | - | chr8.3:68159267-68159286 | None:intergenic | 30.0% |
| !!! | CTATCTCCTTGTTTTCTTTA+TGG | + | chr8.3:68159432-68159451 | MS.gene08515:CDS | 30.0% |
| AAGAGGAACATAAATGTGCA+AGG | + | chr8.3:68159899-68159918 | MS.gene08515:CDS | 35.0% | |
| AGAGGAACATAAATGTGCAA+GGG | + | chr8.3:68159900-68159919 | MS.gene08515:CDS | 35.0% | |
| CAAAATCTTCCCAACTGTAA+TGG | - | chr8.3:68160197-68160216 | None:intergenic | 35.0% | |
| TGTGATCTTCATGAGTATGA+TGG | - | chr8.3:68159811-68159830 | None:intergenic | 35.0% | |
| TGTTCATGAGCTTCACATTT+GGG | + | chr8.3:68160171-68160190 | MS.gene08515:CDS | 35.0% | |
| ! | AGTATTGGAGTAATGATTGG+AGG | + | chr8.3:68159956-68159975 | MS.gene08515:CDS | 35.0% |
| ! | ATGTTTTCAGTTGCTGCATT+TGG | + | chr8.3:68159620-68159639 | MS.gene08515:CDS | 35.0% |
| ! | GATTTTCATGACTGTTGAAC+TGG | + | chr8.3:68159334-68159353 | MS.gene08515:CDS | 35.0% |
| ! | GTGTTATTAGGTCATGATCA+CGG | + | chr8.3:68159668-68159687 | MS.gene08515:CDS | 35.0% |
| !! | TCTTTTGATTCACCGATAAG+TGG | - | chr8.3:68159866-68159885 | None:intergenic | 35.0% |
| AATTAATATGGCTGCTTGCG+GGG | + | chr8.3:68159534-68159553 | MS.gene08515:CDS | 40.0% | |
| ACATTTGGGCCATTACAGTT+GGG | + | chr8.3:68160185-68160204 | MS.gene08515:CDS | 40.0% | |
| ATGCTACTCAGCTTGAAAAG+GGG | + | chr8.3:68160122-68160141 | MS.gene08515:CDS | 40.0% | |
| CAATTAATATGGCTGCTTGC+GGG | + | chr8.3:68159533-68159552 | MS.gene08515:CDS | 40.0% | |
| CAGTCATGAAAATCACACAC+AGG | - | chr8.3:68159328-68159347 | None:intergenic | 40.0% | |
| CCAATTAATATGGCTGCTTG+CGG | + | chr8.3:68159532-68159551 | MS.gene08515:CDS | 40.0% | |
| CTGTTCATGAGCTTCACATT+TGG | + | chr8.3:68160170-68160189 | MS.gene08515:CDS | 40.0% | |
| GAGGAACATAAATGTGCAAG+GGG | + | chr8.3:68159901-68159920 | MS.gene08515:CDS | 40.0% | |
| GATCTTCATGAGTATGATGG+TGG | - | chr8.3:68159808-68159827 | None:intergenic | 40.0% | |
| GATGCTACTCAGCTTGAAAA+GGG | + | chr8.3:68160121-68160140 | MS.gene08515:CDS | 40.0% | |
| TCAGCTTGAAAAGGGGATAT+TGG | + | chr8.3:68160129-68160148 | MS.gene08515:CDS | 40.0% | |
| TGAAAAGGGGATATTGGAGA+TGG | + | chr8.3:68160135-68160154 | MS.gene08515:CDS | 40.0% | |
| TGATGCTACTCAGCTTGAAA+AGG | + | chr8.3:68160120-68160139 | MS.gene08515:CDS | 40.0% | |
| TGATTCACCGATAAGTGGTT+CGG | - | chr8.3:68159861-68159880 | None:intergenic | 40.0% | |
| TTCATGACTGTTGAACTGGT+TGG | + | chr8.3:68159338-68159357 | MS.gene08515:CDS | 40.0% | |
| TTCGATGCGAAAGCTTATGA+TGG | + | chr8.3:68159295-68159314 | MS.gene08515:CDS | 40.0% | |
| ! | TTCTGAAAAACCCATACGAC+TGG | - | chr8.3:68159484-68159503 | None:intergenic | 40.0% |
| !! | CTTGTTTTCTTTATGGGCTG+CGG | + | chr8.3:68159439-68159458 | MS.gene08515:CDS | 40.0% |
| !! | TTGTTTTCTTTATGGGCTGC+GGG | + | chr8.3:68159440-68159459 | MS.gene08515:CDS | 40.0% |
| AAACTGTAAGTCCGTGACTG+TGG | - | chr8.3:68159757-68159776 | None:intergenic | 45.0% | |
| AAAGGGGATATTGGAGATGG+AGG | + | chr8.3:68160138-68160157 | MS.gene08515:CDS | 45.0% | |
| ACCGGCAATGAGTCTATCAA+TGG | - | chr8.3:68159576-68159595 | None:intergenic | 45.0% | |
| ATGACTGTTGAACTGGTTGG+TGG | + | chr8.3:68159341-68159360 | MS.gene08515:CDS | 45.0% | |
| ATTCACCATCACGCACATGA+AGG | + | chr8.3:68159830-68159849 | MS.gene08515:CDS | 45.0% | |
| ATTGGAGATGGAGGAAGTAG+TGG | + | chr8.3:68160147-68160166 | MS.gene08515:CDS | 45.0% | |
| CAAATCTTCCTTCCAGCATC+AGG | - | chr8.3:68159209-68159228 | None:intergenic | 45.0% | |
| CACATTTGGGCCATTACAGT+TGG | + | chr8.3:68160184-68160203 | MS.gene08515:CDS | 45.0% | |
| CCGCAAGCAGCCATATTAAT+TGG | - | chr8.3:68159535-68159554 | None:intergenic | 45.0% | |
| CGCAGCCCATAAAGAAAACA+AGG | - | chr8.3:68159441-68159460 | None:intergenic | 45.0% | |
| GATGCTGGAAGGAAGATTTG+TGG | + | chr8.3:68159209-68159228 | MS.gene08515:CDS | 45.0% | |
| GCCATTGATAGACTCATTGC+CGG | + | chr8.3:68159572-68159591 | MS.gene08515:CDS | 45.0% | |
| GGCGACTCTATCCAAAGTAT+TGG | + | chr8.3:68159941-68159960 | MS.gene08515:CDS | 45.0% | |
| GTCCAAGACCATTTCTGCAT+CGG | - | chr8.3:68160251-68160270 | None:intergenic | 45.0% | |
| TAACACCTTCATGTGCGTGA+TGG | - | chr8.3:68159838-68159857 | None:intergenic | 45.0% | |
| TGACTGTTGAACTGGTTGGT+GGG | + | chr8.3:68159342-68159361 | MS.gene08515:CDS | 45.0% | |
| TGATGCTGCACATCTTCTCT+CGG | + | chr8.3:68159394-68159413 | MS.gene08515:CDS | 45.0% | |
| TGATTGGAGGAGCAGTCATA+TGG | + | chr8.3:68159969-68159988 | MS.gene08515:CDS | 45.0% | |
| ! | ATTTGTGGTGAAGCACCATG+TGG | + | chr8.3:68159224-68159243 | MS.gene08515:CDS | 45.0% |
| ! | GGTGTTACCGAACCACTTAT+CGG | + | chr8.3:68159851-68159870 | MS.gene08515:CDS | 45.0% |
| ! | TGCAGAAATGGTCTTGGACA+AGG | + | chr8.3:68160252-68160271 | MS.gene08515:CDS | 45.0% |
| !! | ACCATCCACATTTTGAGGAC+CGG | - | chr8.3:68159594-68159613 | None:intergenic | 45.0% |
| !! | AGTTGCTGCATTTGGTCTTG+TGG | + | chr8.3:68159628-68159647 | MS.gene08515:CDS | 45.0% |
| !! | CATCGCGGTTGATTTTCACA+TGG | - | chr8.3:68160228-68160247 | None:intergenic | 45.0% |
| AAAAACCCATACGACTGGCG+AGG | - | chr8.3:68159479-68159498 | None:intergenic | 50.0% | |
| AACGCAGATCTTCCTGATGC+TGG | + | chr8.3:68159194-68159213 | MS.gene08515:CDS | 50.0% | |
| CAGATCTTCCTGATGCTGGA+AGG | + | chr8.3:68159198-68159217 | MS.gene08515:CDS | 50.0% | |
| CATGGTCACGGTCATGATCA+CGG | + | chr8.3:68159692-68159711 | MS.gene08515:CDS | 50.0% | |
| CATTGCCGGTCCTCAAAATG+TGG | + | chr8.3:68159586-68159605 | MS.gene08515:CDS | 50.0% | |
| CCAGCATCTGAGAATCCACA+TGG | - | chr8.3:68159242-68159261 | None:intergenic | 50.0% | |
| CCATGTGGATTCTCAGATGC+TGG | + | chr8.3:68159239-68159258 | MS.gene08515:CDS | 50.0% | |
| GGGGCTTATCTCCATGTACT+CGG | + | chr8.3:68159920-68159939 | MS.gene08515:CDS | 50.0% | |
| TGAGTAGCATCAATCTCGCG+AGG | - | chr8.3:68160112-68160131 | None:intergenic | 50.0% | |
| TGCCGATGCAGAAATGGTCT+TGG | + | chr8.3:68160246-68160265 | MS.gene08515:CDS | 50.0% | |
| TTAGGTCATGATCACGGCCA+TGG | + | chr8.3:68159674-68159693 | MS.gene08515:CDS | 50.0% | |
| ! | TTCTTTATGGGCTGCGGGAT+GGG | + | chr8.3:68159445-68159464 | MS.gene08515:CDS | 50.0% |
| ! | TTTCTTTATGGGCTGCGGGA+TGG | + | chr8.3:68159444-68159463 | MS.gene08515:CDS | 50.0% |
| CATGATCACGGCCATGGTCA+CGG | + | chr8.3:68159680-68159699 | MS.gene08515:CDS | 55.0% | |
| CATGGTCACGGTCATGACCA+CGG | + | chr8.3:68159716-68159735 | MS.gene08515:CDS | 55.0% | |
| CGTGATCATGACCGTGACCA+TGG | - | chr8.3:68159694-68159713 | None:intergenic | 55.0% | |
| CTACTCCTCGCCAGTCGTAT+GGG | + | chr8.3:68159471-68159490 | MS.gene08515:CDS | 55.0% | |
| GACCACGGACATGGTCATCA+TGG | + | chr8.3:68159731-68159750 | MS.gene08515:CDS | 55.0% | |
| GCCGGTCCTCAAAATGTGGA+TGG | + | chr8.3:68159590-68159609 | MS.gene08515:CDS | 55.0% | |
| GGATAGAGTCGCCGAGTACA+TGG | - | chr8.3:68159934-68159953 | None:intergenic | 55.0% | |
| GGTCATCATGGCCACAGTCA+CGG | + | chr8.3:68159743-68159762 | MS.gene08515:CDS | 55.0% | |
| ! | CCATTTCTGCATCGGCATCG+CGG | - | chr8.3:68160243-68160262 | None:intergenic | 55.0% |
| ATGCGCACAGCTCTCAGCAC+GGG | + | chr8.3:68159156-68159175 | MS.gene08515:CDS | 60.0% | |
| CACGGTCATGACCACGGACA+TGG | + | chr8.3:68159722-68159741 | MS.gene08515:CDS | 60.0% | |
| CACGGTCATGATCACGGCCA+TGG | + | chr8.3:68159698-68159717 | MS.gene08515:CDS | 60.0% | |
| CCGCGATGCCGATGCAGAAA+TGG | + | chr8.3:68160240-68160259 | MS.gene08515:CDS | 60.0% | |
| CGTGGTCATGACCGTGACCA+TGG | - | chr8.3:68159718-68159737 | None:intergenic | 60.0% | |
| GATGCGCACAGCTCTCAGCA+CGG | + | chr8.3:68159155-68159174 | MS.gene08515:CDS | 60.0% | |
| GCTACTCCTCGCCAGTCGTA+TGG | + | chr8.3:68159470-68159489 | MS.gene08515:CDS | 60.0% | |
| GGCCATGATGACCATGTCCG+TGG | - | chr8.3:68159736-68159755 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 68159152 | 68160336 | 68159152 | ID=MS.gene08515 |
| chr8.3 | mRNA | 68159152 | 68160336 | 68159152 | ID=MS.gene08515.t1;Parent=MS.gene08515 |
| chr8.3 | exon | 68159152 | 68160336 | 68159152 | ID=MS.gene08515.t1.exon1;Parent=MS.gene08515.t1 |
| chr8.3 | CDS | 68159152 | 68160336 | 68159152 | ID=cds.MS.gene08515.t1;Parent=MS.gene08515.t1 |
| Gene Sequence |
| Protein sequence |
