AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036995

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036995.t1 MTR_2g036390 97.549 408 9 1 1 408 1 407 0.0 795
MS.gene036995.t1 MTR_8g024240 77.206 408 70 4 1 408 1 385 0.0 556
MS.gene036995.t1 MTR_4g064893 47.368 380 175 4 31 407 37 394 4.43e-100 303
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036995.t1 AT2G46800 68.750 416 104 4 1 408 1 398 8.02e-180 506
MS.gene036995.t1 AT2G46800 68.750 416 104 4 1 408 1 398 8.02e-180 506
MS.gene036995.t1 AT2G46800 68.750 416 104 4 1 408 1 398 8.02e-180 506
MS.gene036995.t1 AT2G46800 68.750 416 104 4 1 408 1 398 8.02e-180 506
MS.gene036995.t1 AT2G46800 68.750 416 104 4 1 408 1 398 8.02e-180 506
MS.gene036995.t1 AT3G58810 66.835 395 93 4 15 408 74 431 5.93e-168 478
MS.gene036995.t1 AT3G58810 66.835 395 93 4 15 408 35 392 7.16e-168 476
MS.gene036995.t1 AT3G61940 71.341 164 42 1 245 408 176 334 3.14e-74 235
MS.gene036995.t1 AT3G61940 67.320 153 46 2 24 175 7 156 4.27e-65 211
MS.gene036995.t1 AT2G29410 50.000 146 73 0 31 176 36 181 4.70e-43 155
MS.gene036995.t1 AT2G04620 28.608 395 227 10 33 383 386 769 5.42e-33 131
MS.gene036995.t1 AT2G04620 29.134 381 229 9 33 381 218 589 8.39e-31 124
MS.gene036995.t1 AT1G33020 62.069 58 18 1 351 408 491 544 7.67e-14 73.6

Find 105 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTATGGCTTTGGTATT+GGG 0.244966 2.1:-53864859 MS.gene036995:CDS
TGGTTTCTATGCAATTAATA+TGG 0.258906 2.1:-53864993 MS.gene036995:CDS
TCCAGCCCATATAGAAAATA+AGG 0.287725 2.1:+53865077 None:intergenic
TATGTTCCGTTTCTTCTTCT+CGG 0.293379 2.1:+53864585 None:intergenic
CATCATTATGGCTTTGGTAT+TGG 0.295955 2.1:-53864860 MS.gene036995:CDS
TGAGGTAGTTGGTGGTATTA+AGG 0.314580 2.1:-53865166 MS.gene036995:CDS
CAACATGCTGAGAAACATTC+TGG 0.322869 2.1:-53864407 MS.gene036995:CDS
GAGGTTACTGAACCACTTCT+TGG 0.325560 2.1:-53864625 MS.gene036995:CDS
CAATTAATATGGCTGCTTGC+TGG 0.329178 2.1:-53864982 MS.gene036995:CDS
CCGAATCCTCGTCAGTCATT+TGG 0.330373 2.1:-53865045 MS.gene036995:CDS
CTGTTCATGAGCTGCACATA+TGG 0.341164 2.1:-53864303 MS.gene036995:CDS
TCAGATTCAAAAGGGGCTAT+TGG 0.341343 2.1:-53864344 MS.gene036995:CDS
TCTTGTGGTGAACATCATTA+TGG 0.376777 2.1:-53864872 MS.gene036995:CDS
AATAGAGATTCTTGGTGCTT+TGG 0.384622 2.1:-53865013 MS.gene036995:CDS
CAGAGTATTGGTGTAATGAT+TGG 0.384953 2.1:-53864520 MS.gene036995:CDS
AGAGTATTGGTGTAATGATT+GGG 0.403737 2.1:-53864519 MS.gene036995:CDS
AAACATTCTGGAAGTCTTGA+TGG 0.415617 2.1:-53864395 MS.gene036995:CDS
ATGTTTGTAGTTGCTGCATT+TGG 0.417750 2.1:-53864895 MS.gene036995:CDS
GGTGAACATCATTATGGCTT+TGG 0.430114 2.1:-53864866 MS.gene036995:CDS
AATTAATATGGCTGCTTGCT+GGG 0.433529 2.1:-53864981 MS.gene036995:CDS
CCAAATGACTGACGAGGATT+CGG 0.433628 2.1:+53865045 None:intergenic
GCCATTGCTAGACTCATTGC+AGG 0.434083 2.1:-53864943 MS.gene036995:CDS
CAGTAACCTCTTTGTGGTCA+TGG 0.441794 2.1:+53864638 None:intergenic
ATGTTCCGTTTCTTCTTCTC+GGG 0.446423 2.1:+53864586 None:intergenic
TTCATGTCCGTTGAGGTAGT+TGG 0.447396 2.1:-53865177 MS.gene036995:CDS
TTTCTATATGGGCTGGAGGA+TGG 0.450599 2.1:-53865071 MS.gene036995:CDS
TTCTATATGGGCTGGAGGAT+GGG 0.456683 2.1:-53865070 MS.gene036995:CDS
CATGGCCATGGCCGTGATCA+TGG 0.461736 2.1:+53864836 None:intergenic
GGTGCGCATCATCATGAGTA+TGG 0.464413 2.1:+53864668 None:intergenic
ATCACATCAGCGTCTGCTTC+AGG 0.464844 2.1:+53864232 None:intergenic
GGGGCATATCTCCACGTACT+TGG 0.471011 2.1:-53864553 MS.gene036995:CDS
AGATGCTACTCAGATTCAAA+AGG 0.472347 2.1:-53864353 MS.gene036995:CDS
GCCGACCCGAGAAGAAGAAA+CGG 0.483223 2.1:-53864591 MS.gene036995:CDS
AAGCACCAAGAATCTCTATT+CGG 0.486057 2.1:+53865016 None:intergenic
CCACTTCTTGGTGAATCAAA+AGG 0.490972 2.1:-53864613 MS.gene036995:CDS
CCATGTGAGTTCTCAGATGC+AGG 0.494225 2.1:-53865276 MS.gene036995:CDS
TCATATGGTATAAACCTGAA+TGG 0.495450 2.1:-53864489 MS.gene036995:CDS
CACATATGGGCCATTACAGT+GGG 0.495527 2.1:-53864289 MS.gene036995:CDS
CAATACCTTCCCCACTGTAA+TGG 0.500293 2.1:+53864279 None:intergenic
ATGTCCGTTGAGGTAGTTGG+TGG 0.504771 2.1:-53865174 MS.gene036995:CDS
AGCAGACGCTGATGTGATGC+TGG 0.509043 2.1:-53864227 MS.gene036995:CDS
GATGCTACTCAGATTCAAAA+GGG 0.519531 2.1:-53864352 MS.gene036995:CDS
CATGATCACGGCCATGGCCA+TGG 0.520047 2.1:-53864835 MS.gene036995:CDS
ACAAGGTCGTAGACTACATC+AGG 0.528566 2.1:-53864204 MS.gene036995:CDS
TCTCAGCATGTTGATAGTTG+TGG 0.528970 2.1:+53864417 None:intergenic
TCAAAAGGGGCTATTGGAGA+TGG 0.528979 2.1:-53864338 MS.gene036995:CDS
ATGATGCTCATCTGTATGCT+TGG 0.529964 2.1:+53864753 None:intergenic
TGATTTCAATTATTTGCCCA+TGG 0.531617 2.1:+53865343 None:intergenic
TTGGTATTGGGCCATGATCA+CGG 0.532393 2.1:-53864847 MS.gene036995:CDS
TTGGGCCATGATCACGGCCA+TGG 0.533606 2.1:-53864841 MS.gene036995:CDS
CTTTGTGGTCATGGTCATGA+TGG 0.535439 2.1:+53864647 None:intergenic
AGTTGCTGCATTTGGTCTTG+TGG 0.544560 2.1:-53864887 MS.gene036995:CDS
CGTGATCATGTCCATGGCCA+TGG 0.547666 2.1:+53864824 None:intergenic
CAATCATTACACCAATACTC+TGG 0.548068 2.1:+53864521 None:intergenic
TCCGTTTCTTCTTCTCGGGT+CGG 0.548332 2.1:+53864590 None:intergenic
ATGTAGGAAGGAAAATTTGT+GGG 0.548918 2.1:-53865305 MS.gene036995:CDS
GGACATGAAAATAACGCAAA+GGG 0.552650 2.1:+53865191 None:intergenic
GCAGGTCCTCAAGAAGTGGA+TGG 0.553959 2.1:-53864925 MS.gene036995:CDS
CAGGTCCTCAAGAAGTGGAT+GGG 0.559249 2.1:-53864924 MS.gene036995:CDS
GTGGTTCAGTAACCTCTTTG+TGG 0.561769 2.1:+53864632 None:intergenic
AGTGGAGAACTCCCTGATGT+AGG 0.568018 2.1:-53865321 MS.gene036995:CDS
AAACGGAACATAAATGTACA+TGG 0.573750 2.1:-53864574 MS.gene036995:CDS
TGTTCATGAGCTGCACATAT+GGG 0.573784 2.1:-53864302 MS.gene036995:CDS
CATTGCAGGTCCTCAAGAAG+TGG 0.575236 2.1:-53864929 MS.gene036995:CDS
GGAGACTCTATCCAGAGTAT+TGG 0.578371 2.1:-53864532 MS.gene036995:CDS
CATGGCCATGGACATGATCA+CGG 0.583188 2.1:-53864823 MS.gene036995:CDS
CATGGACATGATCACGGCCA+CGG 0.584750 2.1:-53864817 MS.gene036995:CDS
ATGGGCCATTACAGTGGGGA+AGG 0.591116 2.1:-53864284 MS.gene036995:CDS
GAGTATTGGTGTAATGATTG+GGG 0.591360 2.1:-53864518 MS.gene036995:CDS
GGGCAAATAATTGAAATCAG+TGG 0.595396 2.1:-53865339 MS.gene036995:CDS
CCATATAGAAAATAAGGAGA+TGG 0.595760 2.1:+53865083 None:intergenic
CGCTGATGTGATGCTGGACA+AGG 0.600547 2.1:-53864221 MS.gene036995:CDS
ACCTGCAATGAGTCTAGCAA+TGG 0.601692 2.1:+53864942 None:intergenic
ATTGGAGATGGAAGAAGTAG+TGG 0.601966 2.1:-53864326 MS.gene036995:CDS
AAACTGAAATACCATGGCTG+TGG 0.606255 2.1:+53864779 None:intergenic
CGTGGCCGTGATCATGTCCA+TGG 0.606876 2.1:+53864818 None:intergenic
GAGAACTCCCTGATGTAGGA+AGG 0.609906 2.1:-53865317 MS.gene036995:CDS
AAGCACAAAGTGGTCACCAT+GGG 0.612715 2.1:-53865359 MS.gene036995:CDS
GATGTAGGAAGGAAAATTTG+TGG 0.619238 2.1:-53865306 MS.gene036995:CDS
AACGGAACATAAATGTACAT+GGG 0.622867 2.1:-53864573 MS.gene036995:CDS
GGCCACGGACATGATCATCA+TGG 0.626939 2.1:-53864802 MS.gene036995:CDS
TTTCGAAGGATTCTGAAGAA+CGG 0.630672 2.1:-53865248 MS.gene036995:CDS
CCTGCATCTGAGAACTCACA+TGG 0.630931 2.1:+53865276 None:intergenic
AGATGCAGGATCTATTTCGA+AGG 0.632610 2.1:-53865262 MS.gene036995:CDS
GCACATATGGGCCATTACAG+TGG 0.634593 2.1:-53864290 MS.gene036995:CDS
CGGACATGAAAATAACGCAA+AGG 0.635615 2.1:+53865190 None:intergenic
AATACCACCAACTACCTCAA+CGG 0.636394 2.1:+53865170 None:intergenic
GAAGCACAAAGTGGTCACCA+TGG 0.639833 2.1:-53865360 MS.gene036995:CDS
GCGAAAGCTTCTGATAGCAG+TGG 0.645701 2.1:-53865214 MS.gene036995:CDS
TCATGACCATGACCACAAAG+AGG 0.650002 2.1:-53864644 MS.gene036995:CDS
GATCATCATGGCCACAGCCA+TGG 0.655433 2.1:-53864790 MS.gene036995:CDS
TGAGTAGCATCTATCTCGCG+TGG 0.657042 2.1:+53864364 None:intergenic
GGATAGAGTCTCCAAGTACG+TGG 0.658730 2.1:+53864542 None:intergenic
AGGTCGTAGACTACATCAGG+AGG 0.671694 2.1:-53864201 MS.gene036995:CDS
ATGCTACTCAGATTCAAAAG+GGG 0.673395 2.1:-53864351 MS.gene036995:CDS
ACGGAACATAAATGTACATG+GGG 0.674674 2.1:-53864572 MS.gene036995:CDS
TTGCAGATGGAAGCACAAAG+TGG 0.690821 2.1:-53865369 None:intergenic
TGTAGGAAGGAAAATTTGTG+GGG 0.696003 2.1:-53865304 MS.gene036995:CDS
GATGAGCATCATCACACACA+TGG 0.698036 2.1:-53864742 MS.gene036995:CDS
AGTATTGGTGTAATGATTGG+GGG 0.700635 2.1:-53864517 MS.gene036995:CDS
TGGTAGAAACTGAAATACCA+TGG 0.701092 2.1:+53864773 None:intergenic
GGCCATGATGATCATGTCCG+TGG 0.701854 2.1:+53864800 None:intergenic
GCGCATCATCATGAGTATGG+TGG 0.706117 2.1:+53864671 None:intergenic
GGTCGTAGACTACATCAGGA+GGG 0.723067 2.1:-53864200 MS.gene036995:CDS
ACATATGGGCCATTACAGTG+GGG 0.768745 2.1:-53864288 MS.gene036995:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGGTTTCTATGCAATTAATA+TGG - chr2.1:53864529-53864548 MS.gene036995:CDS 25.0%
!! AATCTTTTCTGTAATTGTCT+TGG - chr2.1:53865082-53865101 MS.gene036995:CDS 25.0%
!!! CATCTCCTTATTTTCTATAT+GGG - chr2.1:53864440-53864459 MS.gene036995:CDS 25.0%
AAACGGAACATAAATGTACA+TGG - chr2.1:53864948-53864967 MS.gene036995:CDS 30.0%
AACGGAACATAAATGTACAT+GGG - chr2.1:53864949-53864968 MS.gene036995:CDS 30.0%
ATGTAGGAAGGAAAATTTGT+GGG - chr2.1:53864217-53864236 MS.gene036995:CDS 30.0%
CCATATAGAAAATAAGGAGA+TGG + chr2.1:53864442-53864461 None:intergenic 30.0%
TCATATGGTATAAACCTGAA+TGG - chr2.1:53865033-53865052 MS.gene036995:CDS 30.0%
TGATTTCAATTATTTGCCCA+TGG + chr2.1:53864182-53864201 None:intergenic 30.0%
! AAATCGACTATTTTCCATTC+AGG + chr2.1:53865050-53865069 None:intergenic 30.0%
! AAATTTTCCTTCCTACATCA+GGG + chr2.1:53864215-53864234 None:intergenic 30.0%
! AATGCTTTTCATCATCATGA+TGG + chr2.1:53864818-53864837 None:intergenic 30.0%
! TTTTTCCGAATAGAGATTCT+TGG - chr2.1:53864501-53864520 MS.gene036995:CDS 30.0%
!! AGAGTATTGGTGTAATGATT+GGG - chr2.1:53865003-53865022 MS.gene036995:CDS 30.0%
!! ATCATTATGGCTTTGGTATT+GGG - chr2.1:53864663-53864682 MS.gene036995:CDS 30.0%
!!! CCATCTCCTTATTTTCTATA+TGG - chr2.1:53864439-53864458 MS.gene036995:CDS 30.0%
AAAAATCCAAATGACTGACG+AGG + chr2.1:53864486-53864505 None:intergenic 35.0%
AAGCACCAAGAATCTCTATT+CGG + chr2.1:53864509-53864528 None:intergenic 35.0%
AATTAATATGGCTGCTTGCT+GGG - chr2.1:53864541-53864560 MS.gene036995:CDS 35.0%
ACGGAACATAAATGTACATG+GGG - chr2.1:53864950-53864969 MS.gene036995:CDS 35.0%
AGATGCTACTCAGATTCAAA+AGG - chr2.1:53865169-53865188 MS.gene036995:CDS 35.0%
ATGCTACTCAGATTCAAAAG+GGG - chr2.1:53865171-53865190 MS.gene036995:CDS 35.0%
ATGTTTGTAGTTGCTGCATT+TGG - chr2.1:53864627-53864646 MS.gene036995:CDS 35.0%
CAATCATTACACCAATACTC+TGG + chr2.1:53865004-53865023 None:intergenic 35.0%
GATGCTACTCAGATTCAAAA+GGG - chr2.1:53865170-53865189 MS.gene036995:CDS 35.0%
GATGTAGGAAGGAAAATTTG+TGG - chr2.1:53864216-53864235 MS.gene036995:CDS 35.0%
GGACATGAAAATAACGCAAA+GGG + chr2.1:53864334-53864353 None:intergenic 35.0%
GGGCAAATAATTGAAATCAG+TGG - chr2.1:53864183-53864202 MS.gene036995:CDS 35.0%
TATGTTCCGTTTCTTCTTCT+CGG + chr2.1:53864940-53864959 None:intergenic 35.0%
TCCAGCCCATATAGAAAATA+AGG + chr2.1:53864448-53864467 None:intergenic 35.0%
TCTTGTGGTGAACATCATTA+TGG - chr2.1:53864650-53864669 MS.gene036995:CDS 35.0%
TGGTAGAAACTGAAATACCA+TGG + chr2.1:53864752-53864771 None:intergenic 35.0%
TGTAGGAAGGAAAATTTGTG+GGG - chr2.1:53864218-53864237 MS.gene036995:CDS 35.0%
! AAACATTCTGGAAGTCTTGA+TGG - chr2.1:53865127-53865146 MS.gene036995:CDS 35.0%
! CAAATTTTCCTTCCTACATC+AGG + chr2.1:53864216-53864235 None:intergenic 35.0%
! TTTCGAAGGATTCTGAAGAA+CGG - chr2.1:53864274-53864293 MS.gene036995:CDS 35.0%
!! AATAGAGATTCTTGGTGCTT+TGG - chr2.1:53864509-53864528 MS.gene036995:CDS 35.0%
!! AGTATTGGTGTAATGATTGG+GGG - chr2.1:53865005-53865024 MS.gene036995:CDS 35.0%
!! CAGAGTATTGGTGTAATGAT+TGG - chr2.1:53865002-53865021 MS.gene036995:CDS 35.0%
!! CATCATTATGGCTTTGGTAT+TGG - chr2.1:53864662-53864681 MS.gene036995:CDS 35.0%
!! GAGTATTGGTGTAATGATTG+GGG - chr2.1:53865004-53865023 MS.gene036995:CDS 35.0%
!!! TCCTTATTTTCTATATGGGC+TGG - chr2.1:53864444-53864463 MS.gene036995:CDS 35.0%
!!! TTATTTTCTATATGGGCTGG+AGG - chr2.1:53864447-53864466 MS.gene036995:CDS 35.0%
AAAAACCCATCCACTTCTTG+AGG + chr2.1:53864606-53864625 None:intergenic 40.0%
AAACTGAAATACCATGGCTG+TGG + chr2.1:53864746-53864765 None:intergenic 40.0%
AATACCACCAACTACCTCAA+CGG + chr2.1:53864355-53864374 None:intergenic 40.0%
AGATGCAGGATCTATTTCGA+AGG - chr2.1:53864260-53864279 MS.gene036995:CDS 40.0%
ATGATGCTCATCTGTATGCT+TGG + chr2.1:53864772-53864791 None:intergenic 40.0%
ATGTTCCGTTTCTTCTTCTC+GGG + chr2.1:53864939-53864958 None:intergenic 40.0%
ATTGGAGATGGAAGAAGTAG+TGG - chr2.1:53865196-53865215 MS.gene036995:CDS 40.0%
CAACATGCTGAGAAACATTC+TGG - chr2.1:53865115-53865134 MS.gene036995:CDS 40.0%
CAATTAATATGGCTGCTTGC+TGG - chr2.1:53864540-53864559 MS.gene036995:CDS 40.0%
CCACTTCTTGGTGAATCAAA+AGG - chr2.1:53864909-53864928 MS.gene036995:CDS 40.0%
CGGACATGAAAATAACGCAA+AGG + chr2.1:53864335-53864354 None:intergenic 40.0%
GGTGAACATCATTATGGCTT+TGG - chr2.1:53864656-53864675 MS.gene036995:CDS 40.0%
TCAGATTCAAAAGGGGCTAT+TGG - chr2.1:53865178-53865197 MS.gene036995:CDS 40.0%
TGTTCATGAGCTGCACATAT+GGG - chr2.1:53865220-53865239 MS.gene036995:CDS 40.0%
!! CCTTTTGATTCACCAAGAAG+TGG + chr2.1:53864912-53864931 None:intergenic 40.0%
!! CGTTATTTTCATGTCCGTTG+AGG - chr2.1:53864338-53864357 MS.gene036995:CDS 40.0%
!! TCTCAGCATGTTGATAGTTG+TGG + chr2.1:53865108-53865127 None:intergenic 40.0%
!! TGAGGTAGTTGGTGGTATTA+AGG - chr2.1:53864356-53864375 MS.gene036995:CDS 40.0%
AAGCACAAAGTGGTCACCAT+GGG - chr2.1:53864163-53864182 MS.gene036995:CDS 45.0%
ACAAGGTCGTAGACTACATC+AGG - chr2.1:53865318-53865337 MS.gene036995:CDS 45.0%
ACATATGGGCCATTACAGTG+GGG - chr2.1:53865234-53865253 MS.gene036995:CDS 45.0%
ACCTGCAATGAGTCTAGCAA+TGG + chr2.1:53864583-53864602 None:intergenic 45.0%
CAATACCTTCCCCACTGTAA+TGG + chr2.1:53865246-53865265 None:intergenic 45.0%
CACATATGGGCCATTACAGT+GGG - chr2.1:53865233-53865252 MS.gene036995:CDS 45.0%
CAGTAACCTCTTTGTGGTCA+TGG + chr2.1:53864887-53864906 None:intergenic 45.0%
CCAAATGACTGACGAGGATT+CGG + chr2.1:53864480-53864499 None:intergenic 45.0%
CTGTTCATGAGCTGCACATA+TGG - chr2.1:53865219-53865238 MS.gene036995:CDS 45.0%
CTTTGTGGTCATGGTCATGA+TGG + chr2.1:53864878-53864897 None:intergenic 45.0%
GAGGTTACTGAACCACTTCT+TGG - chr2.1:53864897-53864916 MS.gene036995:CDS 45.0%
GATGAGCATCATCACACACA+TGG - chr2.1:53864780-53864799 MS.gene036995:CDS 45.0%
GGAGACTCTATCCAGAGTAT+TGG - chr2.1:53864990-53865009 MS.gene036995:CDS 45.0%
GTGGTTCAGTAACCTCTTTG+TGG + chr2.1:53864893-53864912 None:intergenic 45.0%
TCAAAAGGGGCTATTGGAGA+TGG - chr2.1:53865184-53865203 MS.gene036995:CDS 45.0%
TCATGACCATGACCACAAAG+AGG - chr2.1:53864878-53864897 MS.gene036995:CDS 45.0%
TGATTGGGGGAGCAATCATA+TGG - chr2.1:53865018-53865037 MS.gene036995:CDS 45.0%
TTCATGTCCGTTGAGGTAGT+TGG - chr2.1:53864345-53864364 MS.gene036995:CDS 45.0%
! TTGGTATTGGGCCATGATCA+CGG - chr2.1:53864675-53864694 MS.gene036995:CDS 45.0%
!! AGTTGCTGCATTTGGTCTTG+TGG - chr2.1:53864635-53864654 MS.gene036995:CDS 45.0%
!! TTCTATATGGGCTGGAGGAT+GGG - chr2.1:53864452-53864471 MS.gene036995:CDS 45.0%
!! TTTCTATATGGGCTGGAGGA+TGG - chr2.1:53864451-53864470 MS.gene036995:CDS 45.0%
AGGTCGTAGACTACATCAGG+AGG - chr2.1:53865321-53865340 MS.gene036995:CDS 50.0%
AGTGGAGAACTCCCTGATGT+AGG - chr2.1:53864201-53864220 MS.gene036995:CDS 50.0%
ATCACATCAGCGTCTGCTTC+AGG + chr2.1:53865293-53865312 None:intergenic 50.0%
ATGTCCGTTGAGGTAGTTGG+TGG - chr2.1:53864348-53864367 MS.gene036995:CDS 50.0%
CAGGTCCTCAAGAAGTGGAT+GGG - chr2.1:53864598-53864617 MS.gene036995:CDS 50.0%
CATGGCCATGGACATGATCA+CGG - chr2.1:53864699-53864718 MS.gene036995:CDS 50.0%
CATTGCAGGTCCTCAAGAAG+TGG - chr2.1:53864593-53864612 MS.gene036995:CDS 50.0%
CCATGTGAGTTCTCAGATGC+AGG - chr2.1:53864246-53864265 MS.gene036995:CDS 50.0%
CCGAATCCTCGTCAGTCATT+TGG - chr2.1:53864477-53864496 MS.gene036995:CDS 50.0%
CCTGCATCTGAGAACTCACA+TGG + chr2.1:53864249-53864268 None:intergenic 50.0%
GAAGCACAAAGTGGTCACCA+TGG - chr2.1:53864162-53864181 MS.gene036995:CDS 50.0%
GAGAACTCCCTGATGTAGGA+AGG - chr2.1:53864205-53864224 MS.gene036995:CDS 50.0%
GCACATATGGGCCATTACAG+TGG - chr2.1:53865232-53865251 MS.gene036995:CDS 50.0%
GCCATTGCTAGACTCATTGC+AGG - chr2.1:53864579-53864598 MS.gene036995:CDS 50.0%
GCGAAAGCTTCTGATAGCAG+TGG - chr2.1:53864308-53864327 MS.gene036995:CDS 50.0%
GCGCATCATCATGAGTATGG+TGG + chr2.1:53864854-53864873 None:intergenic 50.0%
GGATAGAGTCTCCAAGTACG+TGG + chr2.1:53864983-53865002 None:intergenic 50.0%
GGTCGTAGACTACATCAGGA+GGG - chr2.1:53865322-53865341 MS.gene036995:CDS 50.0%
GGTGCGCATCATCATGAGTA+TGG + chr2.1:53864857-53864876 None:intergenic 50.0%
TCCGTTTCTTCTTCTCGGGT+CGG + chr2.1:53864935-53864954 None:intergenic 50.0%
TGAGTAGCATCTATCTCGCG+TGG + chr2.1:53865161-53865180 None:intergenic 50.0%
AGCAGACGCTGATGTGATGC+TGG - chr2.1:53865295-53865314 MS.gene036995:CDS 55.0%
ATGGGCCATTACAGTGGGGA+AGG - chr2.1:53865238-53865257 MS.gene036995:CDS 55.0%
CATGGACATGATCACGGCCA+CGG - chr2.1:53864705-53864724 MS.gene036995:CDS 55.0%
CGCTGATGTGATGCTGGACA+AGG - chr2.1:53865301-53865320 MS.gene036995:CDS 55.0%
CGTGATCATGTCCATGGCCA+TGG + chr2.1:53864701-53864720 None:intergenic 55.0%
GATCATCATGGCCACAGCCA+TGG - chr2.1:53864732-53864751 MS.gene036995:CDS 55.0%
GCAGGTCCTCAAGAAGTGGA+TGG - chr2.1:53864597-53864616 MS.gene036995:CDS 55.0%
GCCGACCCGAGAAGAAGAAA+CGG - chr2.1:53864931-53864950 MS.gene036995:CDS 55.0%
GGCCACGGACATGATCATCA+TGG - chr2.1:53864720-53864739 MS.gene036995:CDS 55.0%
GGCCATGATGATCATGTCCG+TGG + chr2.1:53864725-53864744 None:intergenic 55.0%
GGGGCATATCTCCACGTACT+TGG - chr2.1:53864969-53864988 MS.gene036995:CDS 55.0%
CATGATCACGGCCATGGCCA+TGG - chr2.1:53864687-53864706 MS.gene036995:CDS 60.0%
CATGGCCATGGCCGTGATCA+TGG + chr2.1:53864689-53864708 None:intergenic 60.0%
CGTGGCCGTGATCATGTCCA+TGG + chr2.1:53864707-53864726 None:intergenic 60.0%
TTGGGCCATGATCACGGCCA+TGG - chr2.1:53864681-53864700 MS.gene036995:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 53864159 53865385 53864159 ID=MS.gene036995
chr2.1 mRNA 53864159 53865385 53864159 ID=MS.gene036995.t1;Parent=MS.gene036995
chr2.1 exon 53864159 53865385 53864159 ID=MS.gene036995.t1.exon1;Parent=MS.gene036995.t1
chr2.1 CDS 53864159 53865385 53864159 ID=cds.MS.gene036995.t1;Parent=MS.gene036995.t1
Gene Sequence

>MS.gene036995

ATGGAAGCACAAAGTGGTCACCATGGGCAAATAATTGAAATCAGTGGAGAACTCCCTGATGTAGGAAGGAAAATTTGTGGGGAAGCACCATGTGAGTTCTCAGATGCAGGATCTATTTCGAAGGATTCTGAAGAACGGTCAACTTCTATGCGAAAGCTTCTGATAGCAGTGGCCCTTTGCGTTATTTTCATGTCCGTTGAGGTAGTTGGTGGTATTAAGGCTAACAGTCTTGCAATATTGACTGATGCAGCACATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCCTTATTTTCTATATGGGCTGGAGGATGGGAACCGAATCCTCGTCAGTCATTTGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATGCAATTAATATGGCTGCTTGCTGGGATTCTTGTATATGAAGCCATTGCTAGACTCATTGCAGGTCCTCAAGAAGTGGATGGGTTTTTAATGTTTGTAGTTGCTGCATTTGGTCTTGTGGTGAACATCATTATGGCTTTGGTATTGGGCCATGATCACGGCCATGGCCATGGACATGATCACGGCCACGGACATGATCATCATGGCCACAGCCATGGTATTTCAGTTTCTACCAAGCATACAGATGAGCATCATCACACACATGGCGATCAGACTCACCATCATGATGATGAAAAGCATTCGAAAGATGAACACCACCATACTCATGATGATGCGCACCATCATGACCATGACCACAAAGAGGTTACTGAACCACTTCTTGGTGAATCAAAAGGCCGACCCGAGAAGAAGAAACGGAACATAAATGTACATGGGGCATATCTCCACGTACTTGGAGACTCTATCCAGAGTATTGGTGTAATGATTGGGGGAGCAATCATATGGTATAAACCTGAATGGAAAATAGTCGATTTGATTTGCACTCTAATCTTTTCTGTAATTGTCTTGGCCACAACTATCAACATGCTGAGAAACATTCTGGAAGTCTTGATGGAAAGCACACCACGCGAGATAGATGCTACTCAGATTCAAAAGGGGCTATTGGAGATGGAAGAAGTAGTGGCTGTTCATGAGCTGCACATATGGGCCATTACAGTGGGGAAGGTATTGCTAGCTTGTCATGTTAAAGTCATTCCTGAAGCAGACGCTGATGTGATGCTGGACAAGGTCGTAGACTACATCAGGAGGGTTCATAACATTAGTCATGTAACTATTCAAATAGAACGCTAA
Protein sequence

>MS.gene036995.t1

MEAQSGHHGQIIEISGELPDVGRKICGEAPCEFSDAGSISKDSEERSTSMRKLLIAVALCVIFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSIWAGGWEPNPRQSFGFFRIEILGALVSMQLIWLLAGILVYEAIARLIAGPQEVDGFLMFVVAAFGLVVNIIMALVLGHDHGHGHGHDHGHGHDHHGHSHGISVSTKHTDEHHHTHGDQTHHHDDEKHSKDEHHHTHDDAHHHDHDHKEVTEPLLGESKGRPEKKKRNINVHGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLATTINMLRNILEVLMESTPREIDATQIQKGLLEMEEVVAVHELHIWAITVGKVLLACHVKVIPEADADVMLDKVVDYIRRVHNISHVTIQIER