Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060477.t1 | XP_013444540.1 | 95.2 | 394 | 10 | 2 | 1 | 394 | 1 | 385 | 1.60E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060477.t1 | Q9ZT63 | 78.9 | 403 | 71 | 3 | 1 | 394 | 1 | 398 | 5.7e-137 | 488.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060477.t1 | A0A072TYD5 | 95.2 | 394 | 10 | 2 | 1 | 394 | 1 | 385 | 1.2e-167 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060477 | MS.gene08515 | 0.896751 | 2.73E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060477 | MS.gene05860 | PPI |
| MS.gene40160 | MS.gene060477 | PPI |
| MS.gene060477 | MS.gene020531 | PPI |
| MS.gene060477 | MS.gene05970 | PPI |
| MS.gene05971 | MS.gene060477 | PPI |
| MS.gene060477 | MS.gene015707 | PPI |
| MS.gene060477 | MS.gene05859 | PPI |
| MS.gene060477 | MS.gene028573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060477.t1 | MTR_8g024240 | 95.431 | 394 | 9 | 2 | 1 | 394 | 1 | 385 | 0.0 | 749 |
| MS.gene060477.t1 | MTR_2g036390 | 76.923 | 416 | 65 | 3 | 1 | 394 | 1 | 407 | 0.0 | 575 |
| MS.gene060477.t1 | MTR_4g064893 | 48.603 | 358 | 175 | 3 | 42 | 393 | 40 | 394 | 5.48e-100 | 302 |
| MS.gene060477.t1 | MTR_6g463330 | 33.333 | 108 | 69 | 2 | 45 | 152 | 421 | 525 | 9.58e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060477.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene060477.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene060477.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene060477.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene060477.t1 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
| MS.gene060477.t1 | AT3G58810 | 68.280 | 372 | 95 | 2 | 23 | 394 | 44 | 392 | 9.30e-168 | 475 |
| MS.gene060477.t1 | AT3G58810 | 64.500 | 400 | 113 | 3 | 1 | 394 | 55 | 431 | 1.26e-167 | 476 |
| MS.gene060477.t1 | AT3G61940 | 64.191 | 377 | 89 | 5 | 20 | 394 | 2 | 334 | 3.07e-152 | 433 |
| MS.gene060477.t1 | AT2G29410 | 44.578 | 166 | 90 | 1 | 13 | 176 | 16 | 181 | 1.68e-44 | 158 |
| MS.gene060477.t1 | AT2G04620 | 28.497 | 386 | 223 | 8 | 33 | 367 | 386 | 769 | 2.25e-34 | 135 |
| MS.gene060477.t1 | AT2G04620 | 29.412 | 374 | 223 | 9 | 33 | 367 | 218 | 589 | 2.15e-32 | 129 |
| MS.gene060477.t1 | AT1G33020 | 58.621 | 58 | 20 | 1 | 337 | 394 | 491 | 544 | 1.85e-12 | 69.3 |
Find 84 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATGTTCCTCTTCTTCT+TGG | 0.153720 | 8.1:-76044389 | None:intergenic |
| CCGCAAGCAGCCATATTAAT+TGG | 0.265618 | 8.1:-76044030 | None:intergenic |
| ATCATTATGGCTGTGTTATT+AGG | 0.275823 | 8.1:+76044154 | MS.gene060477:CDS |
| TAGTGTCTATCCAATTAATA+TGG | 0.295359 | 8.1:+76044020 | MS.gene060477:CDS |
| CTGTTCATGAGCTCCACATT+TGG | 0.312952 | 8.1:+76044668 | MS.gene060477:CDS |
| TCAGCTTGAAAAGGGGATAT+TGG | 0.326926 | 8.1:+76044627 | MS.gene060477:CDS |
| CAATTAATATGGCTGCTTGC+GGG | 0.339016 | 8.1:+76044031 | MS.gene060477:CDS |
| TTCTTTATGGGCTGCGGGAT+GGG | 0.345119 | 8.1:+76043943 | MS.gene060477:CDS |
| TCTTGTGGTTAACATCATTA+TGG | 0.346550 | 8.1:+76044141 | MS.gene060477:CDS |
| TGTTCATGAGCTCCACATTT+GGG | 0.346809 | 8.1:+76044669 | MS.gene060477:CDS |
| CCGCGATGCCGATGCAGAAA+TGG | 0.394198 | 8.1:+76044738 | MS.gene060477:CDS |
| GCTACTCCTCGCCAGTCGTA+TGG | 0.416422 | 8.1:+76043968 | MS.gene060477:CDS |
| CAAAGTATTGGAGTAATGAT+TGG | 0.429651 | 8.1:+76044451 | MS.gene060477:CDS |
| CAATCATTACTCCAATACTT+TGG | 0.433927 | 8.1:-76044450 | None:intergenic |
| CAAATCTTCCTTCCAGCATC+AGG | 0.435707 | 8.1:-76043704 | None:intergenic |
| TGATTCACCTATAAGTGGTT+CGG | 0.435730 | 8.1:-76044356 | None:intergenic |
| TGCCGATGCAGAAATGGTCT+TGG | 0.445950 | 8.1:+76044744 | MS.gene060477:CDS |
| TGATGCTACTCAGCTTGAAA+AGG | 0.447061 | 8.1:+76044618 | MS.gene060477:CDS |
| CACATTTGGGCCATTACAGT+TGG | 0.449190 | 8.1:+76044682 | MS.gene060477:CDS |
| AACGCAGATCTTCCTGATGC+TGG | 0.451107 | 8.1:+76043692 | MS.gene060477:CDS |
| TTTCTTTATGGGCTGCGGGA+TGG | 0.463688 | 8.1:+76043942 | MS.gene060477:CDS |
| GCCATTGATAGACTCATTGC+CGG | 0.464636 | 8.1:+76044070 | MS.gene060477:CDS |
| CAAAATCTTCCCAACTGTAA+TGG | 0.466674 | 8.1:-76044692 | None:intergenic |
| CCATGTGGATTCTCAGATGC+TGG | 0.472337 | 8.1:+76043737 | MS.gene060477:CDS |
| ATGACTGTTGAACTGGTTGG+TGG | 0.480251 | 8.1:+76043839 | MS.gene060477:CDS |
| GATGCTACTCAGCTTGAAAA+GGG | 0.481257 | 8.1:+76044619 | MS.gene060477:CDS |
| GGTGTTACCGAACCACTTAT+AGG | 0.481440 | 8.1:+76044349 | MS.gene060477:CDS |
| TTCTTTAGAATCGTTAGAGA+TGG | 0.488494 | 8.1:-76043762 | None:intergenic |
| AATTAATATGGCTGCTTGCG+GGG | 0.503347 | 8.1:+76044032 | MS.gene060477:CDS |
| GGATAGAGTCGCCGAGTACA+TGG | 0.506706 | 8.1:-76044429 | None:intergenic |
| CTACTCCTCGCCAGTCGTAT+GGG | 0.515170 | 8.1:+76043969 | MS.gene060477:CDS |
| GTCCAAGACCATTTCTGCAT+CGG | 0.516842 | 8.1:-76044746 | None:intergenic |
| GGCGACTCTATCCAAAGTAT+TGG | 0.525010 | 8.1:+76044439 | MS.gene060477:CDS |
| ACATTTGGGCCATTACAGTT+GGG | 0.528212 | 8.1:+76044683 | MS.gene060477:CDS |
| AGTTGCTGCATTTGGTCTTG+TGG | 0.528547 | 8.1:+76044126 | MS.gene060477:CDS |
| AAAGGGGATATTGGAGATGG+AGG | 0.528785 | 8.1:+76044636 | MS.gene060477:CDS |
| TGACTGTTGAACTGGTTGGT+GGG | 0.528847 | 8.1:+76043840 | MS.gene060477:CDS |
| ATGCGCACAGCTCTCAGCAC+GGG | 0.529246 | 8.1:+76043654 | MS.gene060477:CDS |
| TGATTGGAGGAGCAGTCATA+TGG | 0.529348 | 8.1:+76044467 | MS.gene060477:CDS |
| TTCATGACTGTTGAACTGGT+TGG | 0.537554 | 8.1:+76043836 | MS.gene060477:CDS |
| GACCACGGACATGGTCATCA+TGG | 0.538513 | 8.1:+76044229 | MS.gene060477:CDS |
| CGCAGCCCATAAAGAAAACA+AGG | 0.541633 | 8.1:-76043936 | None:intergenic |
| TGATGCTGCACATCTTCTCT+CGG | 0.546138 | 8.1:+76043892 | MS.gene060477:CDS |
| TCATATGGTATAAACCAGAA+TGG | 0.551207 | 8.1:+76044482 | MS.gene060477:CDS |
| ATTGGAGATGGAGGAAGTAG+TGG | 0.552789 | 8.1:+76044645 | MS.gene060477:CDS |
| TGCAGAAATGGTCTTGGACA+AGG | 0.558212 | 8.1:+76044750 | MS.gene060477:CDS |
| ACCGGCAATGAGTCTATCAA+TGG | 0.559996 | 8.1:-76044071 | None:intergenic |
| TGAAAAGGGGATATTGGAGA+TGG | 0.560441 | 8.1:+76044633 | MS.gene060477:CDS |
| GCCGGTCCTCAAAATGTGGA+TGG | 0.562681 | 8.1:+76044088 | MS.gene060477:CDS |
| GATGCGCACAGCTCTCAGCA+CGG | 0.572499 | 8.1:+76043653 | MS.gene060477:CDS |
| CCAATTAATATGGCTGCTTG+CGG | 0.573913 | 8.1:+76044030 | MS.gene060477:CDS |
| CATTGCCGGTCCTCAAAATG+TGG | 0.576379 | 8.1:+76044084 | MS.gene060477:CDS |
| CACGGTCATGATCACGGCCA+TGG | 0.576823 | 8.1:+76044196 | MS.gene060477:CDS |
| TTAGGTCATGATCACGGCCA+TGG | 0.578885 | 8.1:+76044172 | MS.gene060477:CDS |
| CAGATCTTCCTGATGCTGGA+AGG | 0.583756 | 8.1:+76043696 | MS.gene060477:CDS |
| TTCGATGCGAAAGCTTATGA+TGG | 0.585844 | 8.1:+76043793 | MS.gene060477:CDS |
| AGTATTGGAGTAATGATTGG+AGG | 0.590084 | 8.1:+76044454 | MS.gene060477:CDS |
| CAACTGTAATGGCCCAAATG+TGG | 0.594141 | 8.1:-76044681 | None:intergenic |
| CATGATCACGGCCATGGTCA+CGG | 0.600715 | 8.1:+76044178 | MS.gene060477:CDS |
| AGAGGAACATAAATGTGCAA+GGG | 0.601512 | 8.1:+76044398 | MS.gene060477:CDS |
| CATGGTCACGGTCATGATCA+CGG | 0.602486 | 8.1:+76044190 | MS.gene060477:CDS |
| CATGATCACGGCCATGGTCA+CGG | 0.602707 | 8.1:+76044202 | MS.gene060477:CDS |
| AAGAGGAACATAAATGTGCA+AGG | 0.606363 | 8.1:+76044397 | MS.gene060477:CDS |
| ATTCACCATCACGCACATGA+AGG | 0.615684 | 8.1:+76044328 | MS.gene060477:CDS |
| CACGGTCATGACCACGGACA+TGG | 0.619001 | 8.1:+76044220 | MS.gene060477:CDS |
| GAGGAACATAAATGTGCAAG+GGG | 0.624945 | 8.1:+76044399 | MS.gene060477:CDS |
| GATGCTGGAAGGAAGATTTG+TGG | 0.628927 | 8.1:+76043707 | MS.gene060477:CDS |
| GGGGCTTATCTCCATGTACT+CGG | 0.633375 | 8.1:+76044418 | MS.gene060477:CDS |
| CGTGGTCATGACCGTGACCA+TGG | 0.633589 | 8.1:-76044213 | None:intergenic |
| TGTGATCTTCATGAGTATGA+TGG | 0.636300 | 8.1:-76044306 | None:intergenic |
| CGTGATCATGACCGTGACCA+TGG | 0.646434 | 8.1:-76044189 | None:intergenic |
| AAACTGTAAGTCCGTGACTG+TGG | 0.653391 | 8.1:-76044252 | None:intergenic |
| GTGTTATTAGGTCATGATCA+CGG | 0.662294 | 8.1:+76044166 | MS.gene060477:CDS |
| ATGCTACTCAGCTTGAAAAG+GGG | 0.663099 | 8.1:+76044620 | MS.gene060477:CDS |
| GGTCATCATGGCCACAGTCA+CGG | 0.667903 | 8.1:+76044241 | MS.gene060477:CDS |
| CATGGTCACGGTCATGACCA+CGG | 0.670414 | 8.1:+76044214 | MS.gene060477:CDS |
| TGAGTAGCATCAATCTCGCG+AGG | 0.676529 | 8.1:-76044607 | None:intergenic |
| TAACACCTTCATGTGCGTGA+TGG | 0.678047 | 8.1:-76044333 | None:intergenic |
| CCAGCATCTGAGAATCCACA+TGG | 0.679240 | 8.1:-76043737 | None:intergenic |
| GGCCATGATGACCATGTCCG+TGG | 0.689643 | 8.1:-76044231 | None:intergenic |
| ATTTGTGGTGAAGCACCATG+TGG | 0.697709 | 8.1:+76043722 | MS.gene060477:CDS |
| CCATTTCTGCATCGGCATCG+CGG | 0.700086 | 8.1:-76044738 | None:intergenic |
| CAGTCATGAAAATCACACAC+AGG | 0.700380 | 8.1:-76043823 | None:intergenic |
| GATCTTCATGAGTATGATGG+TGG | 0.722381 | 8.1:-76044303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TAGTGTCTATCCAATTAATA+TGG | + | chr8.1:76044020-76044039 | MS.gene060477:CDS | 25.0% |
| !! | AAATCAACTATTTTCCATTC+TGG | - | chr8.1:76044499-76044518 | None:intergenic | 25.0% |
| !! | AATTTGCACTCTATTCTTTT+CGG | + | chr8.1:76044519-76044538 | MS.gene060477:CDS | 25.0% |
| !!! | TAACATTTTAGAAGTTCTGA+TGG | + | chr8.1:76044576-76044595 | MS.gene060477:CDS | 25.0% |
| !!! | TATCTCCTTGTTTTCTTTAT+GGG | + | chr8.1:76043931-76043950 | MS.gene060477:CDS | 25.0% |
| !!! | TTTTTCAGAATAGAGATTCT+CGG | + | chr8.1:76043992-76044011 | MS.gene060477:CDS | 25.0% |
| AAGAAAAATCCAAGAAGAAG+AGG | + | chr8.1:76044380-76044399 | MS.gene060477:CDS | 30.0% | |
| ATTTATGTTCCTCTTCTTCT+TGG | - | chr8.1:76044392-76044411 | None:intergenic | 30.0% | |
| CAATCATTACTCCAATACTT+TGG | - | chr8.1:76044453-76044472 | None:intergenic | 30.0% | |
| TCATATGGTATAAACCAGAA+TGG | + | chr8.1:76044482-76044501 | MS.gene060477:CDS | 30.0% | |
| TCTTGTGGTTAACATCATTA+TGG | + | chr8.1:76044141-76044160 | MS.gene060477:CDS | 30.0% | |
| ! | AAAAAACCATCCACATTTTG+AGG | - | chr8.1:76044097-76044116 | None:intergenic | 30.0% |
| ! | ATCATTATGGCTGTGTTATT+AGG | + | chr8.1:76044154-76044173 | MS.gene060477:CDS | 30.0% |
| ! | ATTCTTTTCGGCAATTGTTT+TGG | + | chr8.1:76044531-76044550 | MS.gene060477:CDS | 30.0% |
| ! | TTCTTTTCGGCAATTGTTTT+GGG | + | chr8.1:76044532-76044551 | MS.gene060477:CDS | 30.0% |
| !! | CAAAGTATTGGAGTAATGAT+TGG | + | chr8.1:76044451-76044470 | MS.gene060477:CDS | 30.0% |
| !! | TCTTTTGATTCACCTATAAG+TGG | - | chr8.1:76044364-76044383 | None:intergenic | 30.0% |
| !! | TTCTTTAGAATCGTTAGAGA+TGG | - | chr8.1:76043765-76043784 | None:intergenic | 30.0% |
| !!! | CTATCTCCTTGTTTTCTTTA+TGG | + | chr8.1:76043930-76043949 | MS.gene060477:CDS | 30.0% |
| AAGAGGAACATAAATGTGCA+AGG | + | chr8.1:76044397-76044416 | MS.gene060477:CDS | 35.0% | |
| AGAGGAACATAAATGTGCAA+GGG | + | chr8.1:76044398-76044417 | MS.gene060477:CDS | 35.0% | |
| CAAAATCTTCCCAACTGTAA+TGG | - | chr8.1:76044695-76044714 | None:intergenic | 35.0% | |
| TGATTCACCTATAAGTGGTT+CGG | - | chr8.1:76044359-76044378 | None:intergenic | 35.0% | |
| TGTGATCTTCATGAGTATGA+TGG | - | chr8.1:76044309-76044328 | None:intergenic | 35.0% | |
| ! | AGTATTGGAGTAATGATTGG+AGG | + | chr8.1:76044454-76044473 | MS.gene060477:CDS | 35.0% |
| ! | ATGTTTTCAGTTGCTGCATT+TGG | + | chr8.1:76044118-76044137 | MS.gene060477:CDS | 35.0% |
| ! | GATTTTCATGACTGTTGAAC+TGG | + | chr8.1:76043832-76043851 | MS.gene060477:CDS | 35.0% |
| ! | GTGTTATTAGGTCATGATCA+CGG | + | chr8.1:76044166-76044185 | MS.gene060477:CDS | 35.0% |
| AATTAATATGGCTGCTTGCG+GGG | + | chr8.1:76044032-76044051 | MS.gene060477:CDS | 40.0% | |
| ACATTTGGGCCATTACAGTT+GGG | + | chr8.1:76044683-76044702 | MS.gene060477:CDS | 40.0% | |
| ATGCTACTCAGCTTGAAAAG+GGG | + | chr8.1:76044620-76044639 | MS.gene060477:CDS | 40.0% | |
| CAATTAATATGGCTGCTTGC+GGG | + | chr8.1:76044031-76044050 | MS.gene060477:CDS | 40.0% | |
| CAGTCATGAAAATCACACAC+AGG | - | chr8.1:76043826-76043845 | None:intergenic | 40.0% | |
| CCAATTAATATGGCTGCTTG+CGG | + | chr8.1:76044030-76044049 | MS.gene060477:CDS | 40.0% | |
| GAGGAACATAAATGTGCAAG+GGG | + | chr8.1:76044399-76044418 | MS.gene060477:CDS | 40.0% | |
| GATCTTCATGAGTATGATGG+TGG | - | chr8.1:76044306-76044325 | None:intergenic | 40.0% | |
| GATGCTACTCAGCTTGAAAA+GGG | + | chr8.1:76044619-76044638 | MS.gene060477:CDS | 40.0% | |
| TCAGCTTGAAAAGGGGATAT+TGG | + | chr8.1:76044627-76044646 | MS.gene060477:CDS | 40.0% | |
| TGAAAAGGGGATATTGGAGA+TGG | + | chr8.1:76044633-76044652 | MS.gene060477:CDS | 40.0% | |
| TGATGCTACTCAGCTTGAAA+AGG | + | chr8.1:76044618-76044637 | MS.gene060477:CDS | 40.0% | |
| TGTTCATGAGCTCCACATTT+GGG | + | chr8.1:76044669-76044688 | MS.gene060477:CDS | 40.0% | |
| TTCATGACTGTTGAACTGGT+TGG | + | chr8.1:76043836-76043855 | MS.gene060477:CDS | 40.0% | |
| TTCGATGCGAAAGCTTATGA+TGG | + | chr8.1:76043793-76043812 | MS.gene060477:CDS | 40.0% | |
| ! | TTCTGAAAAACCCATACGAC+TGG | - | chr8.1:76043982-76044001 | None:intergenic | 40.0% |
| !! | CTTGTTTTCTTTATGGGCTG+CGG | + | chr8.1:76043937-76043956 | MS.gene060477:CDS | 40.0% |
| !! | TTGTTTTCTTTATGGGCTGC+GGG | + | chr8.1:76043938-76043957 | MS.gene060477:CDS | 40.0% |
| AAACTGTAAGTCCGTGACTG+TGG | - | chr8.1:76044255-76044274 | None:intergenic | 45.0% | |
| AAAGGGGATATTGGAGATGG+AGG | + | chr8.1:76044636-76044655 | MS.gene060477:CDS | 45.0% | |
| ACCGGCAATGAGTCTATCAA+TGG | - | chr8.1:76044074-76044093 | None:intergenic | 45.0% | |
| ATGACTGTTGAACTGGTTGG+TGG | + | chr8.1:76043839-76043858 | MS.gene060477:CDS | 45.0% | |
| ATTCACCATCACGCACATGA+AGG | + | chr8.1:76044328-76044347 | MS.gene060477:CDS | 45.0% | |
| ATTGGAGATGGAGGAAGTAG+TGG | + | chr8.1:76044645-76044664 | MS.gene060477:CDS | 45.0% | |
| CAAATCTTCCTTCCAGCATC+AGG | - | chr8.1:76043707-76043726 | None:intergenic | 45.0% | |
| CAACTGTAATGGCCCAAATG+TGG | - | chr8.1:76044684-76044703 | None:intergenic | 45.0% | |
| CACATTTGGGCCATTACAGT+TGG | + | chr8.1:76044682-76044701 | MS.gene060477:CDS | 45.0% | |
| CCGCAAGCAGCCATATTAAT+TGG | - | chr8.1:76044033-76044052 | None:intergenic | 45.0% | |
| CGCAGCCCATAAAGAAAACA+AGG | - | chr8.1:76043939-76043958 | None:intergenic | 45.0% | |
| CTGTTCATGAGCTCCACATT+TGG | + | chr8.1:76044668-76044687 | MS.gene060477:CDS | 45.0% | |
| GATGCTGGAAGGAAGATTTG+TGG | + | chr8.1:76043707-76043726 | MS.gene060477:CDS | 45.0% | |
| GCCATTGATAGACTCATTGC+CGG | + | chr8.1:76044070-76044089 | MS.gene060477:CDS | 45.0% | |
| GGCGACTCTATCCAAAGTAT+TGG | + | chr8.1:76044439-76044458 | MS.gene060477:CDS | 45.0% | |
| GTCCAAGACCATTTCTGCAT+CGG | - | chr8.1:76044749-76044768 | None:intergenic | 45.0% | |
| TAACACCTTCATGTGCGTGA+TGG | - | chr8.1:76044336-76044355 | None:intergenic | 45.0% | |
| TGACTGTTGAACTGGTTGGT+GGG | + | chr8.1:76043840-76043859 | MS.gene060477:CDS | 45.0% | |
| TGATGCTGCACATCTTCTCT+CGG | + | chr8.1:76043892-76043911 | MS.gene060477:CDS | 45.0% | |
| TGATTGGAGGAGCAGTCATA+TGG | + | chr8.1:76044467-76044486 | MS.gene060477:CDS | 45.0% | |
| ! | ATTTGTGGTGAAGCACCATG+TGG | + | chr8.1:76043722-76043741 | MS.gene060477:CDS | 45.0% |
| ! | GGTGTTACCGAACCACTTAT+AGG | + | chr8.1:76044349-76044368 | MS.gene060477:CDS | 45.0% |
| ! | TGCAGAAATGGTCTTGGACA+AGG | + | chr8.1:76044750-76044769 | MS.gene060477:CDS | 45.0% |
| !! | ACCATCCACATTTTGAGGAC+CGG | - | chr8.1:76044092-76044111 | None:intergenic | 45.0% |
| !! | AGTTGCTGCATTTGGTCTTG+TGG | + | chr8.1:76044126-76044145 | MS.gene060477:CDS | 45.0% |
| !! | CATCGCGGTTGATTTTCACA+TGG | - | chr8.1:76044726-76044745 | None:intergenic | 45.0% |
| AAAAACCCATACGACTGGCG+AGG | - | chr8.1:76043977-76043996 | None:intergenic | 50.0% | |
| AACGCAGATCTTCCTGATGC+TGG | + | chr8.1:76043692-76043711 | MS.gene060477:CDS | 50.0% | |
| CAGATCTTCCTGATGCTGGA+AGG | + | chr8.1:76043696-76043715 | MS.gene060477:CDS | 50.0% | |
| CATGGTCACGGTCATGATCA+CGG | + | chr8.1:76044190-76044209 | MS.gene060477:CDS | 50.0% | |
| CATTGCCGGTCCTCAAAATG+TGG | + | chr8.1:76044084-76044103 | MS.gene060477:CDS | 50.0% | |
| CCAGCATCTGAGAATCCACA+TGG | - | chr8.1:76043740-76043759 | None:intergenic | 50.0% | |
| CCATGTGGATTCTCAGATGC+TGG | + | chr8.1:76043737-76043756 | MS.gene060477:CDS | 50.0% | |
| GGGGCTTATCTCCATGTACT+CGG | + | chr8.1:76044418-76044437 | MS.gene060477:CDS | 50.0% | |
| TGAGTAGCATCAATCTCGCG+AGG | - | chr8.1:76044610-76044629 | None:intergenic | 50.0% | |
| TGCCGATGCAGAAATGGTCT+TGG | + | chr8.1:76044744-76044763 | MS.gene060477:CDS | 50.0% | |
| TTAGGTCATGATCACGGCCA+TGG | + | chr8.1:76044172-76044191 | MS.gene060477:CDS | 50.0% | |
| ! | TTCTTTATGGGCTGCGGGAT+GGG | + | chr8.1:76043943-76043962 | MS.gene060477:CDS | 50.0% |
| ! | TTTCTTTATGGGCTGCGGGA+TGG | + | chr8.1:76043942-76043961 | MS.gene060477:CDS | 50.0% |
| CATGATCACGGCCATGGTCA+CGG | + | chr8.1:76044178-76044197 | MS.gene060477:CDS | 55.0% | |
| CATGGTCACGGTCATGACCA+CGG | + | chr8.1:76044214-76044233 | MS.gene060477:CDS | 55.0% | |
| CGTGATCATGACCGTGACCA+TGG | - | chr8.1:76044192-76044211 | None:intergenic | 55.0% | |
| CTACTCCTCGCCAGTCGTAT+GGG | + | chr8.1:76043969-76043988 | MS.gene060477:CDS | 55.0% | |
| GACCACGGACATGGTCATCA+TGG | + | chr8.1:76044229-76044248 | MS.gene060477:CDS | 55.0% | |
| GCCGGTCCTCAAAATGTGGA+TGG | + | chr8.1:76044088-76044107 | MS.gene060477:CDS | 55.0% | |
| GGATAGAGTCGCCGAGTACA+TGG | - | chr8.1:76044432-76044451 | None:intergenic | 55.0% | |
| GGTCATCATGGCCACAGTCA+CGG | + | chr8.1:76044241-76044260 | MS.gene060477:CDS | 55.0% | |
| ! | CCATTTCTGCATCGGCATCG+CGG | - | chr8.1:76044741-76044760 | None:intergenic | 55.0% |
| ATGCGCACAGCTCTCAGCAC+GGG | + | chr8.1:76043654-76043673 | MS.gene060477:CDS | 60.0% | |
| CACGGTCATGACCACGGACA+TGG | + | chr8.1:76044220-76044239 | MS.gene060477:CDS | 60.0% | |
| CACGGTCATGATCACGGCCA+TGG | + | chr8.1:76044196-76044215 | MS.gene060477:CDS | 60.0% | |
| CCGCGATGCCGATGCAGAAA+TGG | + | chr8.1:76044738-76044757 | MS.gene060477:CDS | 60.0% | |
| CGTGGTCATGACCGTGACCA+TGG | - | chr8.1:76044216-76044235 | None:intergenic | 60.0% | |
| GATGCGCACAGCTCTCAGCA+CGG | + | chr8.1:76043653-76043672 | MS.gene060477:CDS | 60.0% | |
| GCTACTCCTCGCCAGTCGTA+TGG | + | chr8.1:76043968-76043987 | MS.gene060477:CDS | 60.0% | |
| GGCCATGATGACCATGTCCG+TGG | - | chr8.1:76044234-76044253 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 76043650 | 76044834 | 76043650 | ID=MS.gene060477 |
| chr8.1 | mRNA | 76043650 | 76044834 | 76043650 | ID=MS.gene060477.t1;Parent=MS.gene060477 |
| chr8.1 | exon | 76043650 | 76044834 | 76043650 | ID=MS.gene060477.t1.exon1;Parent=MS.gene060477.t1 |
| chr8.1 | CDS | 76043650 | 76044834 | 76043650 | ID=cds.MS.gene060477.t1;Parent=MS.gene060477.t1 |
| Gene Sequence |
| Protein sequence |
