Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82003.t1 | XP_013444540.1 | 95.4 | 393 | 10 | 1 | 1 | 393 | 1 | 385 | 1.30E-169 | 605.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82003.t1 | Q9ZT63 | 78.2 | 403 | 73 | 3 | 1 | 393 | 1 | 398 | 1.4e-135 | 484.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82003.t1 | A0A072TYD5 | 95.4 | 393 | 10 | 1 | 1 | 393 | 1 | 385 | 9.5e-170 | 605.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058055 | MS.gene82003 | 0.802281 | 6.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82003 | MS.gene020531 | PPI |
| MS.gene82003 | MS.gene40160 | PPI |
| MS.gene82003 | MS.gene015707 | PPI |
| MS.gene82003 | MS.gene05860 | PPI |
| MS.gene82003 | MS.gene05859 | PPI |
| MS.gene82003 | MS.gene028573 | PPI |
| MS.gene05971 | MS.gene82003 | PPI |
| MS.gene82003 | MS.gene05970 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82003.t1 | MTR_8g024240 | 95.420 | 393 | 10 | 1 | 1 | 393 | 1 | 385 | 0.0 | 753 |
| MS.gene82003.t1 | MTR_2g036390 | 76.442 | 416 | 66 | 4 | 1 | 393 | 1 | 407 | 0.0 | 568 |
| MS.gene82003.t1 | MTR_4g064893 | 48.883 | 358 | 175 | 3 | 41 | 392 | 39 | 394 | 2.34e-101 | 306 |
| MS.gene82003.t1 | MTR_6g463330 | 30.000 | 170 | 115 | 3 | 225 | 392 | 735 | 902 | 1.17e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82003.t1 | AT2G46800 | 69.727 | 403 | 107 | 3 | 1 | 393 | 1 | 398 | 0.0 | 513 |
| MS.gene82003.t1 | AT2G46800 | 69.727 | 403 | 107 | 3 | 1 | 393 | 1 | 398 | 0.0 | 513 |
| MS.gene82003.t1 | AT2G46800 | 69.727 | 403 | 107 | 3 | 1 | 393 | 1 | 398 | 0.0 | 513 |
| MS.gene82003.t1 | AT2G46800 | 69.727 | 403 | 107 | 3 | 1 | 393 | 1 | 398 | 0.0 | 513 |
| MS.gene82003.t1 | AT2G46800 | 69.727 | 403 | 107 | 3 | 1 | 393 | 1 | 398 | 0.0 | 513 |
| MS.gene82003.t1 | AT3G58810 | 64.912 | 399 | 112 | 4 | 1 | 393 | 55 | 431 | 1.49e-168 | 478 |
| MS.gene82003.t1 | AT3G58810 | 64.912 | 399 | 112 | 4 | 1 | 393 | 16 | 392 | 1.49e-168 | 477 |
| MS.gene82003.t1 | AT3G61940 | 64.096 | 376 | 90 | 5 | 20 | 393 | 2 | 334 | 1.24e-150 | 429 |
| MS.gene82003.t1 | AT2G29410 | 44.578 | 166 | 90 | 1 | 13 | 176 | 16 | 181 | 7.69e-44 | 156 |
| MS.gene82003.t1 | AT2G04620 | 28.238 | 386 | 223 | 7 | 33 | 366 | 386 | 769 | 1.19e-35 | 139 |
| MS.gene82003.t1 | AT2G04620 | 29.178 | 377 | 219 | 9 | 33 | 366 | 218 | 589 | 9.28e-34 | 132 |
| MS.gene82003.t1 | AT1G33020 | 58.621 | 58 | 20 | 1 | 336 | 393 | 491 | 544 | 1.94e-12 | 68.9 |
Find 83 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTTATGTTCCTCTTCT+TGG | 0.070300 | 8.2:-71559183 | None:intergenic |
| CAATATGCTGCGAAACATTT+TGG | 0.138374 | 8.2:+71559355 | MS.gene82003:CDS |
| CAGCAAGCAGCCATATTAAT+TGG | 0.268819 | 8.2:-71558824 | None:intergenic |
| TGGTGTCTATCCAATTAATA+TGG | 0.287924 | 8.2:+71558814 | MS.gene82003:CDS |
| CTGTTCATGAGCTCCACATT+TGG | 0.312952 | 8.2:+71559459 | MS.gene82003:CDS |
| CAATTAATATGGCTGCTTGC+TGG | 0.335401 | 8.2:+71558825 | MS.gene82003:CDS |
| TTCTTTATGGGCTGCGGGAT+GGG | 0.345119 | 8.2:+71558737 | MS.gene82003:CDS |
| TCTTGTGGTTAACATCATTA+TGG | 0.346550 | 8.2:+71558935 | MS.gene82003:CDS |
| TGTTCATGAGCTCCACATTT+GGG | 0.346809 | 8.2:+71559460 | MS.gene82003:CDS |
| ATCATTATGGCTGTGTTGTT+AGG | 0.367511 | 8.2:+71558948 | MS.gene82003:CDS |
| AGATGCTGGATCCATCTCTA+TGG | 0.383341 | 8.2:+71558545 | MS.gene82003:CDS |
| CCGCGATGCCGATGCAGAAA+TGG | 0.388971 | 8.2:+71559529 | MS.gene82003:CDS |
| AATTAATATGGCTGCTTGCT+GGG | 0.391583 | 8.2:+71558826 | MS.gene82003:CDS |
| AATAGAGATTCTCGGTGCTT+TGG | 0.420283 | 8.2:+71558794 | MS.gene82003:CDS |
| CAAAGTATTGGAGTAATGAT+TGG | 0.429651 | 8.2:+71559242 | MS.gene82003:CDS |
| CAATCATTACTCCAATACTT+TGG | 0.433927 | 8.2:-71559241 | None:intergenic |
| CAAATCTTCCTTCCAGCATC+AGG | 0.435707 | 8.2:-71558498 | None:intergenic |
| GCTACTCCTCGCCAGTCGTA+CGG | 0.447568 | 8.2:+71558762 | MS.gene82003:CDS |
| CACATTTGGGCCATTACAGT+TGG | 0.449190 | 8.2:+71559473 | MS.gene82003:CDS |
| AACGCAGATCTTCCTGATGC+TGG | 0.451107 | 8.2:+71558486 | MS.gene82003:CDS |
| TGATTCACCGATAAGTGGTT+CGG | 0.460837 | 8.2:-71559150 | None:intergenic |
| TGATGCTACTCAACTTGAAA+GGG | 0.461546 | 8.2:+71559409 | MS.gene82003:CDS |
| TTTCTTTATGGGCTGCGGGA+TGG | 0.463688 | 8.2:+71558736 | MS.gene82003:CDS |
| CAAAATCTTCCCAACTGTAA+TGG | 0.466674 | 8.2:-71559483 | None:intergenic |
| CCATGTGGATTCTCAGATGC+TGG | 0.470318 | 8.2:+71558531 | MS.gene82003:CDS |
| ATGACTGTTGAACTGGTTGG+TGG | 0.480251 | 8.2:+71558633 | MS.gene82003:CDS |
| GGTGTTACCGAACCACTTAT+CGG | 0.489345 | 8.2:+71559143 | MS.gene82003:CDS |
| CTACTCCTCGCCAGTCGTAC+GGG | 0.497721 | 8.2:+71558763 | MS.gene82003:CDS |
| GGATAGAGTCGCCGAGTACA+TGG | 0.506706 | 8.2:-71559220 | None:intergenic |
| TTCTTTAGAATCCATAGAGA+TGG | 0.517511 | 8.2:-71558556 | None:intergenic |
| GCATCTTCTTTCAGATGTTG+CGG | 0.520632 | 8.2:+71558695 | MS.gene82003:CDS |
| TTGATGCTACTCAACTTGAA+AGG | 0.524765 | 8.2:+71559408 | MS.gene82003:CDS |
| GGCGACTCTATCCAAAGTAT+TGG | 0.525010 | 8.2:+71559230 | MS.gene82003:CDS |
| GTCCAACACCATTTCTGCAT+CGG | 0.525223 | 8.2:-71559537 | None:intergenic |
| ACATTTGGGCCATTACAGTT+GGG | 0.528212 | 8.2:+71559474 | MS.gene82003:CDS |
| AGTTGCTGCATTTGGTCTTG+TGG | 0.528547 | 8.2:+71558920 | MS.gene82003:CDS |
| TGACTGTTGAACTGGTTGGT+GGG | 0.528847 | 8.2:+71558634 | MS.gene82003:CDS |
| ATGCGCACAGCTCTCAGCAC+GGG | 0.529246 | 8.2:+71558448 | MS.gene82003:CDS |
| TGATTGGAGGAGCAGTCATA+TGG | 0.529348 | 8.2:+71559258 | MS.gene82003:CDS |
| TTCATGACTGTTGAACTGGT+TGG | 0.537554 | 8.2:+71558630 | MS.gene82003:CDS |
| GACCACGGACATGGTCATCA+TGG | 0.538513 | 8.2:+71559023 | MS.gene82003:CDS |
| CGCAGCCCATAAAGAAAACA+AGG | 0.541633 | 8.2:-71558730 | None:intergenic |
| TCATATGGTATAAACCAGAA+TGG | 0.551207 | 8.2:+71559273 | MS.gene82003:CDS |
| ATTGGAGATGGAGGAAGTAG+TGG | 0.552789 | 8.2:+71559436 | MS.gene82003:CDS |
| TGCCGATGCAGAAATGGTGT+TGG | 0.560331 | 8.2:+71559535 | MS.gene82003:CDS |
| CATGATCACGGCCATGGTCA+TGG | 0.563428 | 8.2:+71558996 | MS.gene82003:CDS |
| GATGCGCACAGCTCTCAGCA+CGG | 0.572499 | 8.2:+71558447 | MS.gene82003:CDS |
| CATGGTCACGGTCATGATCA+CGG | 0.576200 | 8.2:+71558984 | MS.gene82003:CDS |
| CACGGTCATGATCACGGCCA+TGG | 0.576823 | 8.2:+71558990 | MS.gene82003:CDS |
| CAGATCTTCCTGATGCTGGA+AGG | 0.583756 | 8.2:+71558490 | MS.gene82003:CDS |
| AAGAGGAACATAAATGTGCA+AGG | 0.586911 | 8.2:+71559188 | MS.gene82003:CDS |
| ACCAGCGACGAGTCTATCAA+TGG | 0.586936 | 8.2:-71558865 | None:intergenic |
| GCCATTGATAGACTCGTCGC+TGG | 0.587922 | 8.2:+71558864 | MS.gene82003:CDS |
| AGTATTGGAGTAATGATTGG+AGG | 0.590084 | 8.2:+71559245 | MS.gene82003:CDS |
| CAACTGTAATGGCCCAAATG+TGG | 0.594141 | 8.2:-71559472 | None:intergenic |
| CATGATCATGGCCATGGTCA+CGG | 0.598005 | 8.2:+71558972 | MS.gene82003:CDS |
| TTAGGTCATGATCATGGCCA+TGG | 0.598482 | 8.2:+71558966 | MS.gene82003:CDS |
| AGAGGAACATAAATGTGCAA+GGG | 0.601512 | 8.2:+71559189 | MS.gene82003:CDS |
| CGTCGCTGGTCCTCAAAACG+TGG | 0.608749 | 8.2:+71558878 | MS.gene82003:CDS |
| ATTCACCATCACGCACATGA+AGG | 0.615684 | 8.2:+71559122 | MS.gene82003:CDS |
| CCATAAAGAAAACAAGGAGA+TGG | 0.615898 | 8.2:-71558724 | None:intergenic |
| GTGTTGTTAGGTCATGATCA+TGG | 0.617887 | 8.2:+71558960 | MS.gene82003:CDS |
| GAGGAACATAAATGTGCAAG+GGG | 0.624945 | 8.2:+71559190 | MS.gene82003:CDS |
| TGCAGAAATGGTGTTGGACA+AGG | 0.626604 | 8.2:+71559541 | MS.gene82003:CDS |
| GATGCTGGAAGGAAGATTTG+TGG | 0.628927 | 8.2:+71558501 | MS.gene82003:CDS |
| CGTGATCATGACCGTGACCA+TGG | 0.633043 | 8.2:-71558983 | None:intergenic |
| GGGGCTTATCTCCATGTACT+CGG | 0.633375 | 8.2:+71559209 | MS.gene82003:CDS |
| CATGGTCATGACCACGGACA+TGG | 0.634246 | 8.2:+71559014 | MS.gene82003:CDS |
| TGTGATCTTCATGAGTATGA+TGG | 0.636300 | 8.2:-71559100 | None:intergenic |
| GATGCTACTCAACTTGAAAG+GGG | 0.649578 | 8.2:+71559410 | MS.gene82003:CDS |
| CATGGTCATGGTCATGACCA+CGG | 0.650452 | 8.2:+71559008 | MS.gene82003:CDS |
| AAACTGTAAGTCCGTGACTG+TGG | 0.653391 | 8.2:-71559046 | None:intergenic |
| CGTGGTCATGACCATGACCA+TGG | 0.666154 | 8.2:-71559007 | None:intergenic |
| GGTCATCATGGCCACAGTCA+CGG | 0.667903 | 8.2:+71559035 | MS.gene82003:CDS |
| TGAGTAGCATCAATCTCTCG+AGG | 0.673866 | 8.2:-71559398 | None:intergenic |
| GCTGGTCCTCAAAACGTGGA+CGG | 0.674901 | 8.2:+71558882 | MS.gene82003:CDS |
| ATGCTACTCAACTTGAAAGG+GGG | 0.675065 | 8.2:+71559411 | MS.gene82003:CDS |
| CCAGCATCTGAGAATCCACA+TGG | 0.676862 | 8.2:-71558531 | None:intergenic |
| TAACACCTTCATGTGCGTGA+TGG | 0.678047 | 8.2:-71559127 | None:intergenic |
| GGCCATGATGACCATGTCCG+TGG | 0.689643 | 8.2:-71559025 | None:intergenic |
| CCATTTCTGCATCGGCATCG+CGG | 0.700876 | 8.2:-71559529 | None:intergenic |
| ATTTGTGGTGAAGCGCCATG+TGG | 0.704077 | 8.2:+71558516 | MS.gene82003:CDS |
| GATCTTCATGAGTATGATGG+TGG | 0.722381 | 8.2:-71559097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAACTATTTTCCATTC+TGG | - | chr8.2:71559290-71559309 | None:intergenic | 25.0% |
| !! | AATTTGCACTCTATTCTTTT+CGG | + | chr8.2:71559310-71559329 | MS.gene82003:CDS | 25.0% |
| !!! | TTTTTCAGAATAGAGATTCT+CGG | + | chr8.2:71558786-71558805 | MS.gene82003:CDS | 25.0% |
| CAAAAGAAAAATCCAAGAAG+AGG | + | chr8.2:71559171-71559190 | MS.gene82003:CDS | 30.0% | |
| CAATCATTACTCCAATACTT+TGG | - | chr8.2:71559244-71559263 | None:intergenic | 30.0% | |
| TCATATGGTATAAACCAGAA+TGG | + | chr8.2:71559273-71559292 | MS.gene82003:CDS | 30.0% | |
| TCTTGTGGTTAACATCATTA+TGG | + | chr8.2:71558935-71558954 | MS.gene82003:CDS | 30.0% | |
| TGGTGTCTATCCAATTAATA+TGG | + | chr8.2:71558814-71558833 | MS.gene82003:CDS | 30.0% | |
| ! | ATTCTTTTCGGCAATTGTTT+TGG | + | chr8.2:71559322-71559341 | MS.gene82003:CDS | 30.0% |
| ! | TTCTTTTCGGCAATTGTTTT+GGG | + | chr8.2:71559323-71559342 | MS.gene82003:CDS | 30.0% |
| !! | AAACATTTTGGAAGTTCTGA+TGG | + | chr8.2:71559367-71559386 | MS.gene82003:CDS | 30.0% |
| !! | CAAAGTATTGGAGTAATGAT+TGG | + | chr8.2:71559242-71559261 | MS.gene82003:CDS | 30.0% |
| !! | TTCTTTAGAATCCATAGAGA+TGG | - | chr8.2:71558559-71558578 | None:intergenic | 30.0% |
| !!! | CATCTCCTTGTTTTCTTTAT+GGG | + | chr8.2:71558725-71558744 | MS.gene82003:CDS | 30.0% |
| AAGAGGAACATAAATGTGCA+AGG | + | chr8.2:71559188-71559207 | MS.gene82003:CDS | 35.0% | |
| AATTAATATGGCTGCTTGCT+GGG | + | chr8.2:71558826-71558845 | MS.gene82003:CDS | 35.0% | |
| AGAGGAACATAAATGTGCAA+GGG | + | chr8.2:71559189-71559208 | MS.gene82003:CDS | 35.0% | |
| CAAAATCTTCCCAACTGTAA+TGG | - | chr8.2:71559486-71559505 | None:intergenic | 35.0% | |
| CACATTTATGTTCCTCTTCT+TGG | - | chr8.2:71559186-71559205 | None:intergenic | 35.0% | |
| CCATAAAGAAAACAAGGAGA+TGG | - | chr8.2:71558727-71558746 | None:intergenic | 35.0% | |
| TGATGCTACTCAACTTGAAA+GGG | + | chr8.2:71559409-71559428 | MS.gene82003:CDS | 35.0% | |
| TGTGATCTTCATGAGTATGA+TGG | - | chr8.2:71559103-71559122 | None:intergenic | 35.0% | |
| TTGATGCTACTCAACTTGAA+AGG | + | chr8.2:71559408-71559427 | MS.gene82003:CDS | 35.0% | |
| ! | AGTATTGGAGTAATGATTGG+AGG | + | chr8.2:71559245-71559264 | MS.gene82003:CDS | 35.0% |
| ! | ATCATTATGGCTGTGTTGTT+AGG | + | chr8.2:71558948-71558967 | MS.gene82003:CDS | 35.0% |
| ! | ATGTTTTCAGTTGCTGCATT+TGG | + | chr8.2:71558912-71558931 | MS.gene82003:CDS | 35.0% |
| ! | CAATATGCTGCGAAACATTT+TGG | + | chr8.2:71559355-71559374 | MS.gene82003:CDS | 35.0% |
| ! | GATTTTCATGACTGTTGAAC+TGG | + | chr8.2:71558626-71558645 | MS.gene82003:CDS | 35.0% |
| !! | TCTTTTGATTCACCGATAAG+TGG | - | chr8.2:71559158-71559177 | None:intergenic | 35.0% |
| !!! | CCATCTCCTTGTTTTCTTTA+TGG | + | chr8.2:71558724-71558743 | MS.gene82003:CDS | 35.0% |
| ACATTTGGGCCATTACAGTT+GGG | + | chr8.2:71559474-71559493 | MS.gene82003:CDS | 40.0% | |
| ATGCTACTCAACTTGAAAGG+GGG | + | chr8.2:71559411-71559430 | MS.gene82003:CDS | 40.0% | |
| CAATTAATATGGCTGCTTGC+TGG | + | chr8.2:71558825-71558844 | MS.gene82003:CDS | 40.0% | |
| CAGCAAGCAGCCATATTAAT+TGG | - | chr8.2:71558827-71558846 | None:intergenic | 40.0% | |
| GAGGAACATAAATGTGCAAG+GGG | + | chr8.2:71559190-71559209 | MS.gene82003:CDS | 40.0% | |
| GATCTTCATGAGTATGATGG+TGG | - | chr8.2:71559100-71559119 | None:intergenic | 40.0% | |
| GATGCTACTCAACTTGAAAG+GGG | + | chr8.2:71559410-71559429 | MS.gene82003:CDS | 40.0% | |
| GCATCTTCTTTCAGATGTTG+CGG | + | chr8.2:71558695-71558714 | MS.gene82003:CDS | 40.0% | |
| TCAACTTGAAAGGGGGATAT+TGG | + | chr8.2:71559418-71559437 | MS.gene82003:CDS | 40.0% | |
| TGATTCACCGATAAGTGGTT+CGG | - | chr8.2:71559153-71559172 | None:intergenic | 40.0% | |
| TGTTCATGAGCTCCACATTT+GGG | + | chr8.2:71559460-71559479 | MS.gene82003:CDS | 40.0% | |
| TTCATGACTGTTGAACTGGT+TGG | + | chr8.2:71558630-71558649 | MS.gene82003:CDS | 40.0% | |
| ! | AAAAAACCGTCCACGTTTTG+AGG | - | chr8.2:71558891-71558910 | None:intergenic | 40.0% |
| ! | GTGTTGTTAGGTCATGATCA+TGG | + | chr8.2:71558960-71558979 | MS.gene82003:CDS | 40.0% |
| ! | TTCGATGCGAAAGCTTTTGA+TGG | + | chr8.2:71558587-71558606 | MS.gene82003:CDS | 40.0% |
| !! | AATAGAGATTCTCGGTGCTT+TGG | + | chr8.2:71558794-71558813 | MS.gene82003:CDS | 40.0% |
| !! | CTTGTTTTCTTTATGGGCTG+CGG | + | chr8.2:71558731-71558750 | MS.gene82003:CDS | 40.0% |
| !! | TTGTTTTCTTTATGGGCTGC+GGG | + | chr8.2:71558732-71558751 | MS.gene82003:CDS | 40.0% |
| AAACTGTAAGTCCGTGACTG+TGG | - | chr8.2:71559049-71559068 | None:intergenic | 45.0% | |
| AGATGCTGGATCCATCTCTA+TGG | + | chr8.2:71558545-71558564 | MS.gene82003:CDS | 45.0% | |
| ATGACTGTTGAACTGGTTGG+TGG | + | chr8.2:71558633-71558652 | MS.gene82003:CDS | 45.0% | |
| ATTCACCATCACGCACATGA+AGG | + | chr8.2:71559122-71559141 | MS.gene82003:CDS | 45.0% | |
| ATTGGAGATGGAGGAAGTAG+TGG | + | chr8.2:71559436-71559455 | MS.gene82003:CDS | 45.0% | |
| CAAATCTTCCTTCCAGCATC+AGG | - | chr8.2:71558501-71558520 | None:intergenic | 45.0% | |
| CAACTGTAATGGCCCAAATG+TGG | - | chr8.2:71559475-71559494 | None:intergenic | 45.0% | |
| CACATTTGGGCCATTACAGT+TGG | + | chr8.2:71559473-71559492 | MS.gene82003:CDS | 45.0% | |
| CGCAGCCCATAAAGAAAACA+AGG | - | chr8.2:71558733-71558752 | None:intergenic | 45.0% | |
| CTGTTCATGAGCTCCACATT+TGG | + | chr8.2:71559459-71559478 | MS.gene82003:CDS | 45.0% | |
| GATGCTGGAAGGAAGATTTG+TGG | + | chr8.2:71558501-71558520 | MS.gene82003:CDS | 45.0% | |
| GGCGACTCTATCCAAAGTAT+TGG | + | chr8.2:71559230-71559249 | MS.gene82003:CDS | 45.0% | |
| GTCCAACACCATTTCTGCAT+CGG | - | chr8.2:71559540-71559559 | None:intergenic | 45.0% | |
| TAACACCTTCATGTGCGTGA+TGG | - | chr8.2:71559130-71559149 | None:intergenic | 45.0% | |
| TGAAAGGGGGATATTGGAGA+TGG | + | chr8.2:71559424-71559443 | MS.gene82003:CDS | 45.0% | |
| TGACTGTTGAACTGGTTGGT+GGG | + | chr8.2:71558634-71558653 | MS.gene82003:CDS | 45.0% | |
| TGAGTAGCATCAATCTCTCG+AGG | - | chr8.2:71559401-71559420 | None:intergenic | 45.0% | |
| TGATTGGAGGAGCAGTCATA+TGG | + | chr8.2:71559258-71559277 | MS.gene82003:CDS | 45.0% | |
| TTAGGTCATGATCATGGCCA+TGG | + | chr8.2:71558966-71558985 | MS.gene82003:CDS | 45.0% | |
| ! | GGTGTTACCGAACCACTTAT+CGG | + | chr8.2:71559143-71559162 | MS.gene82003:CDS | 45.0% |
| ! | TGCAGAAATGGTGTTGGACA+AGG | + | chr8.2:71559541-71559560 | MS.gene82003:CDS | 45.0% |
| ! | TTCTGAAAAACCCGTACGAC+TGG | - | chr8.2:71558776-71558795 | None:intergenic | 45.0% |
| !! | AGTTGCTGCATTTGGTCTTG+TGG | + | chr8.2:71558920-71558939 | MS.gene82003:CDS | 45.0% |
| !! | CATCGCGGTTGATTTTCACA+TGG | - | chr8.2:71559517-71559536 | None:intergenic | 45.0% |
| AACGCAGATCTTCCTGATGC+TGG | + | chr8.2:71558486-71558505 | MS.gene82003:CDS | 50.0% | |
| AAGGGGGATATTGGAGATGG+AGG | + | chr8.2:71559427-71559446 | MS.gene82003:CDS | 50.0% | |
| ACCAGCGACGAGTCTATCAA+TGG | - | chr8.2:71558868-71558887 | None:intergenic | 50.0% | |
| CAGATCTTCCTGATGCTGGA+AGG | + | chr8.2:71558490-71558509 | MS.gene82003:CDS | 50.0% | |
| CATGATCATGGCCATGGTCA+CGG | + | chr8.2:71558972-71558991 | MS.gene82003:CDS | 50.0% | |
| CATGGTCACGGTCATGATCA+CGG | + | chr8.2:71558984-71559003 | MS.gene82003:CDS | 50.0% | |
| CATGGTCATGGTCATGACCA+CGG | + | chr8.2:71559008-71559027 | MS.gene82003:CDS | 50.0% | |
| CCAGCATCTGAGAATCCACA+TGG | - | chr8.2:71558534-71558553 | None:intergenic | 50.0% | |
| CCATGTGGATTCTCAGATGC+TGG | + | chr8.2:71558531-71558550 | MS.gene82003:CDS | 50.0% | |
| GGGGCTTATCTCCATGTACT+CGG | + | chr8.2:71559209-71559228 | MS.gene82003:CDS | 50.0% | |
| TGCCGATGCAGAAATGGTGT+TGG | + | chr8.2:71559535-71559554 | MS.gene82003:CDS | 50.0% | |
| ! | ATTTGTGGTGAAGCGCCATG+TGG | + | chr8.2:71558516-71558535 | MS.gene82003:CDS | 50.0% |
| ! | TTCTTTATGGGCTGCGGGAT+GGG | + | chr8.2:71558737-71558756 | MS.gene82003:CDS | 50.0% |
| ! | TTTCTTTATGGGCTGCGGGA+TGG | + | chr8.2:71558736-71558755 | MS.gene82003:CDS | 50.0% |
| AAAAACCCGTACGACTGGCG+AGG | - | chr8.2:71558771-71558790 | None:intergenic | 55.0% | |
| CATGATCACGGCCATGGTCA+TGG | + | chr8.2:71558996-71559015 | MS.gene82003:CDS | 55.0% | |
| CATGGTCATGACCACGGACA+TGG | + | chr8.2:71559014-71559033 | MS.gene82003:CDS | 55.0% | |
| CGTGATCATGACCGTGACCA+TGG | - | chr8.2:71558986-71559005 | None:intergenic | 55.0% | |
| CGTGGTCATGACCATGACCA+TGG | - | chr8.2:71559010-71559029 | None:intergenic | 55.0% | |
| GACCACGGACATGGTCATCA+TGG | + | chr8.2:71559023-71559042 | MS.gene82003:CDS | 55.0% | |
| GCCATTGATAGACTCGTCGC+TGG | + | chr8.2:71558864-71558883 | MS.gene82003:CDS | 55.0% | |
| GCTGGTCCTCAAAACGTGGA+CGG | + | chr8.2:71558882-71558901 | MS.gene82003:CDS | 55.0% | |
| GGATAGAGTCGCCGAGTACA+TGG | - | chr8.2:71559223-71559242 | None:intergenic | 55.0% | |
| GGTCATCATGGCCACAGTCA+CGG | + | chr8.2:71559035-71559054 | MS.gene82003:CDS | 55.0% | |
| ! | CCATTTCTGCATCGGCATCG+CGG | - | chr8.2:71559532-71559551 | None:intergenic | 55.0% |
| ATGCGCACAGCTCTCAGCAC+GGG | + | chr8.2:71558448-71558467 | MS.gene82003:CDS | 60.0% | |
| CACGGTCATGATCACGGCCA+TGG | + | chr8.2:71558990-71559009 | MS.gene82003:CDS | 60.0% | |
| CCGCGATGCCGATGCAGAAA+TGG | + | chr8.2:71559529-71559548 | MS.gene82003:CDS | 60.0% | |
| CGTCGCTGGTCCTCAAAACG+TGG | + | chr8.2:71558878-71558897 | MS.gene82003:CDS | 60.0% | |
| CTACTCCTCGCCAGTCGTAC+GGG | + | chr8.2:71558763-71558782 | MS.gene82003:CDS | 60.0% | |
| GATGCGCACAGCTCTCAGCA+CGG | + | chr8.2:71558447-71558466 | MS.gene82003:CDS | 60.0% | |
| GCTACTCCTCGCCAGTCGTA+CGG | + | chr8.2:71558762-71558781 | MS.gene82003:CDS | 60.0% | |
| GGCCATGATGACCATGTCCG+TGG | - | chr8.2:71559028-71559047 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 71558444 | 71559625 | 71558444 | ID=MS.gene82003 |
| chr8.2 | mRNA | 71558444 | 71559625 | 71558444 | ID=MS.gene82003.t1;Parent=MS.gene82003 |
| chr8.2 | exon | 71558444 | 71559625 | 71558444 | ID=MS.gene82003.t1.exon1;Parent=MS.gene82003.t1 |
| chr8.2 | CDS | 71558444 | 71559625 | 71558444 | ID=cds.MS.gene82003.t1;Parent=MS.gene82003.t1 |
| Gene Sequence |
| Protein sequence |
