Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016221.t1 | XP_003623729.1 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 2.00E-212 | 748 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016221.t1 | Q42800 | 87.5 | 327 | 41 | 0 | 40 | 366 | 6 | 332 | 2.3e-172 | 606.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016221.t1 | G7L0A3 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 1.4e-212 | 748.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005617 | MS.gene016221 | PPI |
| MS.gene03038 | MS.gene016221 | PPI |
| MS.gene20715 | MS.gene016221 | PPI |
| MS.gene016221 | MS.gene07198 | PPI |
| MS.gene016221 | MS.gene96090 | PPI |
| MS.gene016221 | MS.gene42158 | PPI |
| MS.gene42158 | MS.gene016221 | PPI |
| MS.gene016221 | MS.gene27569 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016221.t1 | MTR_7g075090 | 98.361 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 0.0 | 755 |
| MS.gene016221.t1 | MTR_1g088775 | 93.169 | 366 | 25 | 0 | 1 | 366 | 1 | 366 | 0.0 | 725 |
| MS.gene016221.t1 | MTR_8g036040 | 66.667 | 345 | 115 | 0 | 22 | 366 | 14 | 358 | 2.13e-176 | 494 |
| MS.gene016221.t1 | MTR_8g036035 | 63.488 | 367 | 128 | 3 | 1 | 366 | 1 | 362 | 9.14e-166 | 468 |
| MS.gene016221.t1 | MTR_8g036020 | 68.910 | 312 | 96 | 1 | 55 | 366 | 18 | 328 | 4.68e-161 | 454 |
| MS.gene016221.t1 | MTR_8g036050 | 63.782 | 312 | 108 | 1 | 55 | 366 | 1 | 307 | 1.31e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016221.t1 | AT2G45440 | 74.590 | 366 | 92 | 1 | 1 | 366 | 1 | 365 | 0.0 | 576 |
| MS.gene016221.t1 | AT3G60880 | 73.770 | 366 | 95 | 1 | 1 | 366 | 1 | 365 | 0.0 | 563 |
| MS.gene016221.t1 | AT3G60880 | 73.770 | 366 | 94 | 2 | 1 | 366 | 1 | 364 | 0.0 | 560 |
Find 101 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGAATATTAAGGTTAT+TGG | 0.186837 | 7.1:-27901838 | MS.gene016221:CDS |
| AAGGATAGAATTTGCCAATT+TGG | 0.190236 | 7.1:-27901242 | MS.gene016221:CDS |
| ACCAATTTCCTTCACCAAAT+TGG | 0.224725 | 7.1:+27901228 | None:intergenic |
| GCCAATTTGGTGAAGGAAAT+TGG | 0.226319 | 7.1:-27901229 | MS.gene016221:CDS |
| ATTAAGGTTATTGGAAATAC+TGG | 0.273517 | 7.1:-27901829 | MS.gene016221:CDS |
| TGTTGCAAGCAATTTGATTC+CGG | 0.308700 | 7.1:-27901443 | MS.gene016221:CDS |
| CATTATTCAGGAACTCTTCC+TGG | 0.320905 | 7.1:-27902662 | MS.gene016221:intron |
| GCGCACACCGTCAATTGTTT+TGG | 0.326575 | 7.1:-27901859 | MS.gene016221:CDS |
| AGCTGCTTGTGTAGGCTTCC+AGG | 0.338802 | 7.1:+27902644 | None:intergenic |
| CTTTCAAAGTGTGCTTTCCA+TGG | 0.342943 | 7.1:-27901686 | MS.gene016221:CDS |
| GCCATTTGTACCTCTCCCTT+TGG | 0.355708 | 7.1:-27901269 | MS.gene016221:CDS |
| CACGATGCTAGATGGGGTTA+TGG | 0.357163 | 7.1:-27901484 | MS.gene016221:CDS |
| TACCTCTCCCTTTGGAGAAA+AGG | 0.366582 | 7.1:-27901261 | MS.gene016221:CDS |
| GTGAAGGCCAACTAATGAAC+TGG | 0.368307 | 7.1:-27901903 | MS.gene016221:CDS |
| GTTGCAAGCAATTTGATTCC+GGG | 0.368402 | 7.1:-27901442 | MS.gene016221:CDS |
| TTAATGCGAGAGCTCATGTT+TGG | 0.368556 | 7.1:-27901418 | MS.gene016221:CDS |
| GTGTTCAAACCAATGGGATT+TGG | 0.372649 | 7.1:+27901334 | None:intergenic |
| AGCTCTTGCCTTTGATTGAC+TGG | 0.378010 | 7.1:-27901369 | MS.gene016221:CDS |
| TAATGCGAGAGCTCATGTTT+GGG | 0.389995 | 7.1:-27901417 | MS.gene016221:CDS |
| ACGATGCTAGATGGGGTTAT+GGG | 0.392947 | 7.1:-27901483 | MS.gene016221:CDS |
| ATGAATGCCACGATGCTAGA+TGG | 0.396310 | 7.1:-27901492 | MS.gene016221:CDS |
| TTGCTCAACTTGGAGTTGTC+AGG | 0.401383 | 7.1:-27901306 | MS.gene016221:CDS |
| AACACGGCTCTTGCTCAACT+TGG | 0.407658 | 7.1:-27901316 | MS.gene016221:CDS |
| GCTCTTCCCAGTTCATTAGT+TGG | 0.415200 | 7.1:+27901896 | None:intergenic |
| GGCTGGTGTCAAGGAATGTA+TGG | 0.417544 | 7.1:-27901575 | MS.gene016221:CDS |
| GCTACATTCAAGACCTATAC+TGG | 0.420080 | 7.1:-27903897 | MS.gene016221:CDS |
| TCATCTCATAACTACGCATT+GGG | 0.424346 | 7.1:+27902601 | None:intergenic |
| AGTTGCATGAATTGCTTCCC+TGG | 0.424932 | 7.1:+27901795 | None:intergenic |
| CTTCATATAAACCCTTACTA+TGG | 0.428403 | 7.1:-27901739 | MS.gene016221:CDS |
| AGATGGGGTTATGGGGCTAC+TGG | 0.429920 | 7.1:-27901475 | MS.gene016221:CDS |
| ACAAATGGCAGCCTGAAAAC+TGG | 0.430651 | 7.1:+27901283 | None:intergenic |
| TTTCAAAGTGTGCTTTCCAT+GGG | 0.432753 | 7.1:-27901685 | MS.gene016221:CDS |
| GGAGTTGAAGGTGTTATTGT+TGG | 0.435948 | 7.1:-27901937 | MS.gene016221:CDS |
| GTTATTGTTGGTGGCACAAC+TGG | 0.447799 | 7.1:-27901925 | MS.gene016221:CDS |
| GCTCAAAGTACTTGCTTGGC+TGG | 0.459949 | 7.1:-27901592 | MS.gene016221:CDS |
| TCATATATAATGTGCCTTCA+CGG | 0.466811 | 7.1:-27901654 | MS.gene016221:CDS |
| AGCAATTCATGCAACTGAGC+AGG | 0.472668 | 7.1:-27901788 | MS.gene016221:CDS |
| CTTAGCTCAAAGTACTTGCT+TGG | 0.473911 | 7.1:-27901596 | MS.gene016221:CDS |
| TTCATCTCATAACTACGCAT+TGG | 0.474360 | 7.1:+27902600 | None:intergenic |
| TATACTGGCGTATGCTTCAC+AGG | 0.477913 | 7.1:-27903882 | MS.gene016221:CDS |
| ATTCCCACCAAAACAATTGA+CGG | 0.482266 | 7.1:+27901852 | None:intergenic |
| CAAAACCTCCTTGGAAGGTA+TGG | 0.482290 | 7.1:-27901716 | MS.gene016221:CDS |
| GTTGAAGGTGTTATTGTTGG+TGG | 0.483414 | 7.1:-27901934 | MS.gene016221:CDS |
| TCAAGATCAAATCGACCGTC+AGG | 0.487193 | 7.1:+27901997 | None:intergenic |
| TTACTATGGCAAAACCTCCT+TGG | 0.496884 | 7.1:-27901725 | MS.gene016221:CDS |
| TATAATGTGCCTTCACGGAC+TGG | 0.501920 | 7.1:-27901649 | MS.gene016221:CDS |
| TTGTCAGTGGTAACATTGGA+AGG | 0.502303 | 7.1:+27903840 | None:intergenic |
| GTGAATATGCAGATTGAGAA+TGG | 0.503509 | 7.1:-27901958 | MS.gene016221:CDS |
| GATTTCACAGCTGCTTGTGT+AGG | 0.510543 | 7.1:+27902636 | None:intergenic |
| AACCAATGGGATTTGGCATG+TGG | 0.510972 | 7.1:+27901341 | None:intergenic |
| TACTTGCTTGGCTGGTGTCA+AGG | 0.511271 | 7.1:-27901584 | MS.gene016221:CDS |
| AGGAATGTATGGGAAATGAC+AGG | 0.516838 | 7.1:-27901564 | MS.gene016221:CDS |
| AAGAGCTTAGAATTCAATGT+AGG | 0.522936 | 7.1:+27901385 | None:intergenic |
| TGTTGGAACTGAAGACGTCC+AGG | 0.522988 | 7.1:-27901194 | MS.gene016221:CDS |
| AAGAGCCGTGTTCAAACCAA+TGG | 0.526094 | 7.1:+27901327 | None:intergenic |
| TCCAAAGGGAGAGGTACAAA+TGG | 0.530348 | 7.1:+27901268 | None:intergenic |
| AGAATTTGCCAATTTGGTGA+AGG | 0.533742 | 7.1:-27901236 | MS.gene016221:CDS |
| AATCGACCGTCAGGTAGGTA+TGG | 0.533788 | 7.1:+27902006 | None:intergenic |
| GGCACATTATATATGATTGT+GGG | 0.534618 | 7.1:+27901661 | None:intergenic |
| TGTGAAGCATACGCCAGTAT+AGG | 0.536807 | 7.1:+27903884 | None:intergenic |
| AGGCACATTATATATGATTG+TGG | 0.538234 | 7.1:+27901660 | None:intergenic |
| AATGCGAGAGCTCATGTTTG+GGG | 0.539435 | 7.1:-27901416 | MS.gene016221:CDS |
| CAGATTGAGAATGGAGTTGA+AGG | 0.544549 | 7.1:-27901949 | MS.gene016221:CDS |
| TTCCACATGCCAAATCCCAT+TGG | 0.545798 | 7.1:-27901343 | MS.gene016221:CDS |
| TCTTGAATCATATGATGCCT+TGG | 0.551015 | 7.1:-27901980 | MS.gene016221:CDS |
| TGAATGCCACGATGCTAGAT+GGG | 0.551513 | 7.1:-27901491 | MS.gene016221:CDS |
| GCAATTCATGCAACTGAGCA+GGG | 0.554140 | 7.1:-27901787 | MS.gene016221:CDS |
| AGTCGTCGTCATCAAGAACC+TGG | 0.556999 | 7.1:+27901176 | None:intergenic |
| TCTCAGACACTTTATGTCCT+CGG | 0.562351 | 7.1:+27902050 | None:intergenic |
| ATACTGGAAGCAACTCAACC+AGG | 0.563622 | 7.1:-27901813 | MS.gene016221:CDS |
| ACGCATTGGGAGGTGAAAAG+TGG | 0.566127 | 7.1:+27902614 | None:intergenic |
| TATGGCAAAACCTCCTTGGA+AGG | 0.570023 | 7.1:-27901721 | MS.gene016221:CDS |
| TGGAAAAGCCAGTCAATCAA+AGG | 0.572095 | 7.1:+27901361 | None:intergenic |
| AGAGCCGTGTTCAAACCAAT+GGG | 0.577523 | 7.1:+27901328 | None:intergenic |
| ATGAGCTCTCGCATTAAACC+CGG | 0.593075 | 7.1:+27901424 | None:intergenic |
| ATAGAATTGCTGTGTGGAGT+GGG | 0.595797 | 7.1:-27901522 | MS.gene016221:CDS |
| ATATATGATTGTGGGCCCCA+TGG | 0.599404 | 7.1:+27901669 | None:intergenic |
| GTGAGCAACCATACCTTCCA+AGG | 0.605193 | 7.1:+27901708 | None:intergenic |
| CGATGCTAGATGGGGTTATG+GGG | 0.609310 | 7.1:-27901482 | MS.gene016221:CDS |
| TATTTACAGGACTTGTACCG+AGG | 0.611279 | 7.1:-27902067 | MS.gene016221:intron |
| TTCAAAGTGTGCTTTCCATG+GGG | 0.611441 | 7.1:-27901684 | MS.gene016221:CDS |
| ATGCGAGAGCTCATGTTTGG+GGG | 0.614814 | 7.1:-27901415 | MS.gene016221:CDS |
| AAATCCCATTGGTTTGAACA+CGG | 0.620889 | 7.1:-27901332 | MS.gene016221:CDS |
| GGAAGGATGAAGCGGAAAAG+CGG | 0.623856 | 7.1:+27903857 | None:intergenic |
| TGAAGGCCAACTAATGAACT+GGG | 0.625991 | 7.1:-27901902 | MS.gene016221:CDS |
| TACTGGAAGCAACTCAACCA+GGG | 0.628120 | 7.1:-27901812 | MS.gene016221:CDS |
| AATAGAATTGCTGTGTGGAG+TGG | 0.632726 | 7.1:-27901523 | MS.gene016221:CDS |
| CTCAATCTGCATATTCACCA+AGG | 0.638337 | 7.1:+27901963 | None:intergenic |
| GCTGGTGTCAAGGAATGTAT+GGG | 0.645660 | 7.1:-27901574 | MS.gene016221:CDS |
| ATGTCTTGACCAGTCCGTGA+AGG | 0.650374 | 7.1:+27901640 | None:intergenic |
| GTTGGTGGCACAACTGGTGA+AGG | 0.654935 | 7.1:-27901919 | MS.gene016221:CDS |
| GATCAAATCGACCGTCAGGT+AGG | 0.655832 | 7.1:+27902001 | None:intergenic |
| TCTCATAACTACGCATTGGG+AGG | 0.661369 | 7.1:+27902604 | None:intergenic |
| GGAATGTATGGGAAATGACA+GGG | 0.665453 | 7.1:-27901563 | MS.gene016221:CDS |
| TTACCACTGACAAAACCACT+AGG | 0.673289 | 7.1:-27903830 | MS.gene016221:intron |
| AAAACTCCATACCTACCTGA+CGG | 0.675250 | 7.1:-27902012 | MS.gene016221:CDS |
| GTAACATTGGAAGGATGAAG+CGG | 0.682034 | 7.1:+27903849 | None:intergenic |
| AGCAACCATACCTTCCAAGG+AGG | 0.704764 | 7.1:+27901711 | None:intergenic |
| GAATGCCACGATGCTAGATG+GGG | 0.719711 | 7.1:-27901490 | MS.gene016221:CDS |
| CATAACCCCATCTAGCATCG+TGG | 0.731383 | 7.1:+27901485 | None:intergenic |
| CTGATAATAGAATTGCTGTG+TGG | 0.757477 | 7.1:-27901528 | MS.gene016221:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTAAGATTGTAA+GGG | - | chr7.1:27901944-27901963 | MS.gene016221:CDS | 10.0% |
| !!! | TTTTTTCAATTAAGATAATA+GGG | - | chr7.1:27901641-27901660 | MS.gene016221:CDS | 10.0% |
| !!! | TTTTTTTAATTAAGATTGTA+AGG | - | chr7.1:27901943-27901962 | MS.gene016221:CDS | 10.0% |
| !!! | TTTTTTTCAATTAAGATAAT+AGG | - | chr7.1:27901640-27901659 | MS.gene016221:CDS | 10.0% |
| !! | ACATTAAACAAACAAAAAAT+TGG | + | chr7.1:27902357-27902376 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTAAGATAATAG+GGG | - | chr7.1:27901642-27901661 | MS.gene016221:CDS | 15.0% |
| !! | AAGCTATATATTGTATTTAC+AGG | - | chr7.1:27902973-27902992 | MS.gene016221:intron | 20.0% |
| !! | TATGCTTTATATATATTGTG+TGG | - | chr7.1:27902579-27902598 | MS.gene016221:intron | 20.0% |
| !! | TGGAAAATATAGAATTTAGT+AGG | + | chr7.1:27902529-27902548 | None:intergenic | 20.0% |
| !!! | TAAGGAGTATATTTAAAAAG+TGG | - | chr7.1:27902864-27902883 | MS.gene016221:intron | 20.0% |
| !!! | TATTTTCTTTTTCTGCTATA+AGG | - | chr7.1:27902244-27902263 | MS.gene016221:intron | 20.0% |
| !!! | TTAATACTGATTTTGTGATA+CGG | + | chr7.1:27902951-27902970 | None:intergenic | 20.0% |
| !!! | TTTACACATTGAACATATTT+TGG | - | chr7.1:27902751-27902770 | MS.gene016221:intron | 20.0% |
| ! | AAGACATGTTTATGTATGTT+TGG | + | chr7.1:27902143-27902162 | None:intergenic | 25.0% |
| ! | AATCTCAAACTGAATAATAG+AGG | + | chr7.1:27902786-27902805 | None:intergenic | 25.0% |
| ! | AATGAGACGATTAAAACAAA+TGG | + | chr7.1:27902549-27902568 | None:intergenic | 25.0% |
| ! | AGTAGGAAAACTAATGAATT+CGG | + | chr7.1:27902512-27902531 | None:intergenic | 25.0% |
| ! | ATTAAGGTTATTGGAAATAC+TGG | - | chr7.1:27903224-27903243 | MS.gene016221:intron | 25.0% |
| ! | CAAACAAAAAATTGGATTCA+TGG | + | chr7.1:27902349-27902368 | None:intergenic | 25.0% |
| ! | GTAGTTATGAGATGAAAAAT+AGG | - | chr7.1:27902460-27902479 | MS.gene016221:intron | 25.0% |
| ! | TAAGCTTGTACAACTAAAAA+AGG | + | chr7.1:27902092-27902111 | None:intergenic | 25.0% |
| ! | TTATGAGATGAAAAATAGGT+AGG | - | chr7.1:27902464-27902483 | MS.gene016221:intron | 25.0% |
| !! | ACAACTAAAAAAGGTTTGTT+TGG | + | chr7.1:27902083-27902102 | None:intergenic | 25.0% |
| !! | GCTGATAATGATAAGTAAAA+TGG | + | chr7.1:27901259-27901278 | None:intergenic | 25.0% |
| !!! | GAATTTCTTTTGTTGTTCAT+CGG | - | chr7.1:27901454-27901473 | MS.gene016221:CDS | 25.0% |
| !!! | TAATACTGATTTTGTGATAC+GGG | + | chr7.1:27902950-27902969 | None:intergenic | 25.0% |
| !!! | TGCGTTGATTTGTTAAAAAT+TGG | - | chr7.1:27901407-27901426 | MS.gene016221:CDS | 25.0% |
| !!! | TTTAATCGTCTCATTTTTTC+AGG | - | chr7.1:27902554-27902573 | MS.gene016221:intron | 25.0% |
| AAGAGCTTAGAATTCAATGT+AGG | + | chr7.1:27903671-27903690 | None:intergenic | 30.0% | |
| AAGGATAGAATTTGCCAATT+TGG | - | chr7.1:27903811-27903830 | MS.gene016221:intron | 30.0% | |
| AATGATGACACAACATATTG+GGG | + | chr7.1:27902214-27902233 | None:intergenic | 30.0% | |
| AATGGAAAATTTGAACCTAG+TGG | + | chr7.1:27901241-27901260 | None:intergenic | 30.0% | |
| AGGCACATTATATATGATTG+TGG | + | chr7.1:27903396-27903415 | None:intergenic | 30.0% | |
| ATACACTTGTGAGAAAATGA+TGG | - | chr7.1:27901727-27901746 | MS.gene016221:CDS | 30.0% | |
| ATAGAGGAGATTTAGACAAT+AGG | - | chr7.1:27902718-27902737 | MS.gene016221:intron | 30.0% | |
| ATGATAAGCTATGAGTTACT+TGG | - | chr7.1:27901682-27901701 | MS.gene016221:CDS | 30.0% | |
| ATGTCTTATACTGTGTAGAT+TGG | - | chr7.1:27902604-27902623 | MS.gene016221:CDS | 30.0% | |
| CAATGATGACACAACATATT+GGG | + | chr7.1:27902215-27902234 | None:intergenic | 30.0% | |
| CTTCATATAAACCCTTACTA+TGG | - | chr7.1:27903314-27903333 | MS.gene016221:intron | 30.0% | |
| GGCACATTATATATGATTGT+GGG | + | chr7.1:27903395-27903414 | None:intergenic | 30.0% | |
| GTAGTGCTTTGTAAAATTAG+CGG | - | chr7.1:27901862-27901881 | MS.gene016221:CDS | 30.0% | |
| TATTGTCTAAATCTCCTCTA+TGG | + | chr7.1:27902719-27902738 | None:intergenic | 30.0% | |
| TCAATGATGACACAACATAT+TGG | + | chr7.1:27902216-27902235 | None:intergenic | 30.0% | |
| TCATATATAATGTGCCTTCA+CGG | - | chr7.1:27903399-27903418 | MS.gene016221:intron | 30.0% | |
| TCGAATTTCGCAATTAGTAA+AGG | + | chr7.1:27901434-27901453 | None:intergenic | 30.0% | |
| TGAGAAAATGATGGTTACTA+AGG | - | chr7.1:27901736-27901755 | MS.gene016221:CDS | 30.0% | |
| ! | AATTCTATCCTTTTCTCCAA+AGG | + | chr7.1:27903803-27903822 | None:intergenic | 30.0% |
| ! | ATTCTATCCTTTTCTCCAAA+GGG | + | chr7.1:27903802-27903821 | None:intergenic | 30.0% |
| ! | CTGATTGAATTTTCAGTGTT+TGG | - | chr7.1:27901555-27901574 | MS.gene016221:CDS | 30.0% |
| !! | AGCTAGTTTATAGTTGATAG+CGG | - | chr7.1:27901818-27901837 | MS.gene016221:CDS | 30.0% |
| !!! | TTGTTTTGGTGGGAATATTA+AGG | - | chr7.1:27903208-27903227 | MS.gene016221:intron | 30.0% |
| AACGTTTGTCTGCATTATTC+AGG | - | chr7.1:27902379-27902398 | MS.gene016221:intron | 35.0% | |
| ACCAATTTCCTTCACCAAAT+TGG | + | chr7.1:27903828-27903847 | None:intergenic | 35.0% | |
| ATACTCCTTAAAACATGCAG+TGG | + | chr7.1:27902854-27902873 | None:intergenic | 35.0% | |
| ATTCCCACCAAAACAATTGA+CGG | + | chr7.1:27903204-27903223 | None:intergenic | 35.0% | |
| CTGATAATAGAATTGCTGTG+TGG | - | chr7.1:27903525-27903544 | MS.gene016221:intron | 35.0% | |
| CTTATACTGTGTAGATTGGA+GGG | - | chr7.1:27902608-27902627 | MS.gene016221:CDS | 35.0% | |
| CTTTATGAACATTGTCGATG+AGG | - | chr7.1:27901365-27901384 | MS.gene016221:CDS | 35.0% | |
| GGTGGGAATATTAAGGTTAT+TGG | - | chr7.1:27903215-27903234 | MS.gene016221:intron | 35.0% | |
| GTGAATATGCAGATTGAGAA+TGG | - | chr7.1:27903095-27903114 | MS.gene016221:intron | 35.0% | |
| TCATCTCATAACTACGCATT+GGG | + | chr7.1:27902455-27902474 | None:intergenic | 35.0% | |
| TCTTATACTGTGTAGATTGG+AGG | - | chr7.1:27902607-27902626 | MS.gene016221:CDS | 35.0% | |
| TCTTGAATCATATGATGCCT+TGG | - | chr7.1:27903073-27903092 | MS.gene016221:intron | 35.0% | |
| TGTTGCAAGCAATTTGATTC+CGG | - | chr7.1:27903610-27903629 | MS.gene016221:intron | 35.0% | |
| TTCATCTCATAACTACGCAT+TGG | + | chr7.1:27902456-27902475 | None:intergenic | 35.0% | |
| TTTCAAAGTGTGCTTTCCAT+GGG | - | chr7.1:27903368-27903387 | MS.gene016221:intron | 35.0% | |
| ! | AGAATTTGCCAATTTGGTGA+AGG | - | chr7.1:27903817-27903836 | MS.gene016221:intron | 35.0% |
| !! | AAATCCCATTGGTTTGAACA+CGG | - | chr7.1:27903721-27903740 | MS.gene016221:intron | 35.0% |
| !! | AGGTAGGTATGGAGTTTTAA+TGG | + | chr7.1:27903039-27903058 | None:intergenic | 35.0% |
| !!! | AAGTTTTGAATCACATGTGG+AGG | + | chr7.1:27903440-27903459 | None:intergenic | 35.0% |
| !!! | GCTAAGTTTTGAATCACATG+TGG | + | chr7.1:27903443-27903462 | None:intergenic | 35.0% |
| !!! | TTCATCGGTTTTGTGGTAAA+TGG | - | chr7.1:27901469-27901488 | MS.gene016221:CDS | 35.0% |
| !!! | TTTGTTGTTCATCGGTTTTG+TGG | - | chr7.1:27901462-27901481 | MS.gene016221:CDS | 35.0% |
| AAAACTCCATACCTACCTGA+CGG | - | chr7.1:27903041-27903060 | MS.gene016221:intron | 40.0% | |
| AAAGTGGTCTCATGTGTTTC+TGG | - | chr7.1:27902880-27902899 | MS.gene016221:intron | 40.0% | |
| AACTGTAGAATGCATGCTCT+GGG | - | chr7.1:27902638-27902657 | MS.gene016221:CDS | 40.0% | |
| AATAGAATTGCTGTGTGGAG+TGG | - | chr7.1:27903530-27903549 | MS.gene016221:intron | 40.0% | |
| AGGAATGTATGGGAAATGAC+AGG | - | chr7.1:27903489-27903508 | MS.gene016221:intron | 40.0% | |
| ATAGAATTGCTGTGTGGAGT+GGG | - | chr7.1:27903531-27903550 | MS.gene016221:intron | 40.0% | |
| ATGGTGATCTACTAGAGTGA+AGG | - | chr7.1:27901488-27901507 | MS.gene016221:CDS | 40.0% | |
| CAGATTGAGAATGGAGTTGA+AGG | - | chr7.1:27903104-27903123 | MS.gene016221:intron | 40.0% | |
| CATTATTCAGGAACTCTTCC+TGG | - | chr7.1:27902391-27902410 | MS.gene016221:intron | 40.0% | |
| CTCAATCTGCATATTCACCA+AGG | + | chr7.1:27903093-27903112 | None:intergenic | 40.0% | |
| CTTTCAAAGTGTGCTTTCCA+TGG | - | chr7.1:27903367-27903386 | MS.gene016221:intron | 40.0% | |
| GATCTGTGATGAAACCATAG+AGG | - | chr7.1:27902702-27902721 | MS.gene016221:intron | 40.0% | |
| GCTACATTCAAGACCTATAC+TGG | - | chr7.1:27901156-27901175 | MS.gene016221:CDS | 40.0% | |
| GGAATGTATGGGAAATGACA+GGG | - | chr7.1:27903490-27903509 | MS.gene016221:intron | 40.0% | |
| GTAACATTGGAAGGATGAAG+CGG | + | chr7.1:27901207-27901226 | None:intergenic | 40.0% | |
| GTGTTCAAACCAATGGGATT+TGG | + | chr7.1:27903722-27903741 | None:intergenic | 40.0% | |
| GTTGCAAGCAATTTGATTCC+GGG | - | chr7.1:27903611-27903630 | MS.gene016221:intron | 40.0% | |
| TAATGCGAGAGCTCATGTTT+GGG | - | chr7.1:27903636-27903655 | MS.gene016221:intron | 40.0% | |
| TATTTACAGGACTTGTACCG+AGG | - | chr7.1:27902986-27903005 | MS.gene016221:intron | 40.0% | |
| TCGTACATGAAGACAGATAC+AGG | + | chr7.1:27902284-27902303 | None:intergenic | 40.0% | |
| TCTCAGACACTTTATGTCCT+CGG | + | chr7.1:27903006-27903025 | None:intergenic | 40.0% | |
| TGAAGGCCAACTAATGAACT+GGG | - | chr7.1:27903151-27903170 | MS.gene016221:intron | 40.0% | |
| TGGAAAAGCCAGTCAATCAA+AGG | + | chr7.1:27903695-27903714 | None:intergenic | 40.0% | |
| TGTATCTGTCTTCATGTACG+AGG | - | chr7.1:27902283-27902302 | MS.gene016221:intron | 40.0% | |
| TTAATGCGAGAGCTCATGTT+TGG | - | chr7.1:27903635-27903654 | MS.gene016221:intron | 40.0% | |
| TTACCACTGACAAAACCACT+AGG | - | chr7.1:27901223-27901242 | MS.gene016221:CDS | 40.0% | |
| TTACTATGGCAAAACCTCCT+TGG | - | chr7.1:27903328-27903347 | MS.gene016221:intron | 40.0% | |
| TTCAAAGTGTGCTTTCCATG+GGG | - | chr7.1:27903369-27903388 | MS.gene016221:intron | 40.0% | |
| TTGTCAGTGGTAACATTGGA+AGG | + | chr7.1:27901216-27901235 | None:intergenic | 40.0% | |
| ! | AAGGAGGTTTTGCCATAGTA+AGG | + | chr7.1:27903329-27903348 | None:intergenic | 40.0% |
| ! | AGGAGGTTTTGCCATAGTAA+GGG | + | chr7.1:27903328-27903347 | None:intergenic | 40.0% |
| ! | ATTGGTCGACAGCATTTTGT+TGG | - | chr7.1:27903842-27903861 | MS.gene016221:CDS | 40.0% |
| ! | CTGTACCACTGCATGTTTTA+AGG | - | chr7.1:27902846-27902865 | MS.gene016221:intron | 40.0% |
| ! | CTTAGCTCAAAGTACTTGCT+TGG | - | chr7.1:27903457-27903476 | MS.gene016221:intron | 40.0% |
| ! | GCCAATTTGGTGAAGGAAAT+TGG | - | chr7.1:27903824-27903843 | MS.gene016221:intron | 40.0% |
| !! | GGAGTTGAAGGTGTTATTGT+TGG | - | chr7.1:27903116-27903135 | MS.gene016221:intron | 40.0% |
| !! | GGTTTTGTCAGTGGTAACAT+TGG | + | chr7.1:27901220-27901239 | None:intergenic | 40.0% |
| !! | GTTGAAGGTGTTATTGTTGG+TGG | - | chr7.1:27903119-27903138 | MS.gene016221:intron | 40.0% |
| !! | TGATGACGACGACTTTTTCT+TGG | - | chr7.1:27903886-27903905 | MS.gene016221:CDS | 40.0% |
| !!! | ACACCGTCAATTGTTTTGGT+GGG | - | chr7.1:27903198-27903217 | MS.gene016221:intron | 40.0% |
| AACCAATGGGATTTGGCATG+TGG | + | chr7.1:27903715-27903734 | None:intergenic | 45.0% | |
| AAGAGCCGTGTTCAAACCAA+TGG | + | chr7.1:27903729-27903748 | None:intergenic | 45.0% | |
| AATGCGAGAGCTCATGTTTG+GGG | - | chr7.1:27903637-27903656 | MS.gene016221:intron | 45.0% | |
| ACAAATGGCAGCCTGAAAAC+TGG | + | chr7.1:27903773-27903792 | None:intergenic | 45.0% | |
| ACGATGCTAGATGGGGTTAT+GGG | - | chr7.1:27903570-27903589 | MS.gene016221:intron | 45.0% | |
| AGAGCCGTGTTCAAACCAAT+GGG | + | chr7.1:27903728-27903747 | None:intergenic | 45.0% | |
| AGCAATTCATGCAACTGAGC+AGG | - | chr7.1:27903265-27903284 | MS.gene016221:intron | 45.0% | |
| AGCTCTTGCCTTTGATTGAC+TGG | - | chr7.1:27903684-27903703 | MS.gene016221:intron | 45.0% | |
| AGTTGCATGAATTGCTTCCC+TGG | + | chr7.1:27903261-27903280 | None:intergenic | 45.0% | |
| ATACTGGAAGCAACTCAACC+AGG | - | chr7.1:27903240-27903259 | MS.gene016221:intron | 45.0% | |
| ATATATGATTGTGGGCCCCA+TGG | + | chr7.1:27903387-27903406 | None:intergenic | 45.0% | |
| ATGAATGCCACGATGCTAGA+TGG | - | chr7.1:27903561-27903580 | MS.gene016221:intron | 45.0% | |
| ATGAGCTCTCGCATTAAACC+CGG | + | chr7.1:27903632-27903651 | None:intergenic | 45.0% | |
| CAAAACCTCCTTGGAAGGTA+TGG | - | chr7.1:27903337-27903356 | MS.gene016221:intron | 45.0% | |
| CACAACATATTGGGGCTCTT+CGG | + | chr7.1:27902206-27902225 | None:intergenic | 45.0% | |
| GAACTGTAGAATGCATGCTC+TGG | - | chr7.1:27902637-27902656 | MS.gene016221:CDS | 45.0% | |
| GATTTCACAGCTGCTTGTGT+AGG | + | chr7.1:27902420-27902439 | None:intergenic | 45.0% | |
| GCAATTCATGCAACTGAGCA+GGG | - | chr7.1:27903266-27903285 | MS.gene016221:intron | 45.0% | |
| GCTCTTCCCAGTTCATTAGT+TGG | + | chr7.1:27903160-27903179 | None:intergenic | 45.0% | |
| GTGAAGGCCAACTAATGAAC+TGG | - | chr7.1:27903150-27903169 | MS.gene016221:intron | 45.0% | |
| TACTGGAAGCAACTCAACCA+GGG | - | chr7.1:27903241-27903260 | MS.gene016221:intron | 45.0% | |
| TATAATGTGCCTTCACGGAC+TGG | - | chr7.1:27903404-27903423 | MS.gene016221:intron | 45.0% | |
| TATACTGGCGTATGCTTCAC+AGG | - | chr7.1:27901171-27901190 | MS.gene016221:CDS | 45.0% | |
| TATGGCAAAACCTCCTTGGA+AGG | - | chr7.1:27903332-27903351 | MS.gene016221:intron | 45.0% | |
| TCAAGATCAAATCGACCGTC+AGG | + | chr7.1:27903059-27903078 | None:intergenic | 45.0% | |
| TCTACTAGAGTGAAGGACTC+TGG | - | chr7.1:27901495-27901514 | MS.gene016221:CDS | 45.0% | |
| TCTCATAACTACGCATTGGG+AGG | + | chr7.1:27902452-27902471 | None:intergenic | 45.0% | |
| TGAATGCCACGATGCTAGAT+GGG | - | chr7.1:27903562-27903581 | MS.gene016221:intron | 45.0% | |
| TGTGAAGCATACGCCAGTAT+AGG | + | chr7.1:27901172-27901191 | None:intergenic | 45.0% | |
| TTCCACATGCCAAATCCCAT+TGG | - | chr7.1:27903710-27903729 | MS.gene016221:intron | 45.0% | |
| TTGCTCAACTTGGAGTTGTC+AGG | - | chr7.1:27903747-27903766 | MS.gene016221:intron | 45.0% | |
| ! | ATCCTTTTCTCCAAAGGGAG+AGG | + | chr7.1:27903797-27903816 | None:intergenic | 45.0% |
| ! | GCTGGTGTCAAGGAATGTAT+GGG | - | chr7.1:27903479-27903498 | MS.gene016221:intron | 45.0% |
| ! | TACCTCTCCCTTTGGAGAAA+AGG | - | chr7.1:27903792-27903811 | MS.gene016221:intron | 45.0% |
| ! | TCCAAAGGGAGAGGTACAAA+TGG | + | chr7.1:27903788-27903807 | None:intergenic | 45.0% |
| !! | CTCATGTGTTTCTGGCATCA+TGG | - | chr7.1:27902888-27902907 | MS.gene016221:intron | 45.0% |
| !! | GTTATTGTTGGTGGCACAAC+TGG | - | chr7.1:27903128-27903147 | MS.gene016221:intron | 45.0% |
| !!! | CACACCGTCAATTGTTTTGG+TGG | - | chr7.1:27903197-27903216 | MS.gene016221:intron | 45.0% |
| !!! | GAACCTAGTGGTTTTGTCAG+TGG | + | chr7.1:27901229-27901248 | None:intergenic | 45.0% |
| AACACGGCTCTTGCTCAACT+TGG | - | chr7.1:27903737-27903756 | MS.gene016221:intron | 50.0% | |
| AATCGACCGTCAGGTAGGTA+TGG | + | chr7.1:27903050-27903069 | None:intergenic | 50.0% | |
| ACGCATTGGGAGGTGAAAAG+TGG | + | chr7.1:27902442-27902461 | None:intergenic | 50.0% | |
| AGCAACCATACCTTCCAAGG+AGG | + | chr7.1:27903345-27903364 | None:intergenic | 50.0% | |
| AGTCGTCGTCATCAAGAACC+TGG | + | chr7.1:27903880-27903899 | None:intergenic | 50.0% | |
| ATGCGAGAGCTCATGTTTGG+GGG | - | chr7.1:27903638-27903657 | MS.gene016221:intron | 50.0% | |
| ATGTCTTGACCAGTCCGTGA+AGG | + | chr7.1:27903416-27903435 | None:intergenic | 50.0% | |
| CACGATGCTAGATGGGGTTA+TGG | - | chr7.1:27903569-27903588 | MS.gene016221:intron | 50.0% | |
| CATAACCCCATCTAGCATCG+TGG | + | chr7.1:27903571-27903590 | None:intergenic | 50.0% | |
| CGATGCTAGATGGGGTTATG+GGG | - | chr7.1:27903571-27903590 | MS.gene016221:intron | 50.0% | |
| GAATGCCACGATGCTAGATG+GGG | - | chr7.1:27903563-27903582 | MS.gene016221:intron | 50.0% | |
| GATCAAATCGACCGTCAGGT+AGG | + | chr7.1:27903055-27903074 | None:intergenic | 50.0% | |
| GCCATTTGTACCTCTCCCTT+TGG | - | chr7.1:27903784-27903803 | MS.gene016221:intron | 50.0% | |
| GGAAGGATGAAGCGGAAAAG+CGG | + | chr7.1:27901199-27901218 | None:intergenic | 50.0% | |
| GTGAGCAACCATACCTTCCA+AGG | + | chr7.1:27903348-27903367 | None:intergenic | 50.0% | |
| TGTTGGAACTGAAGACGTCC+AGG | - | chr7.1:27903859-27903878 | MS.gene016221:CDS | 50.0% | |
| ! | CATGCTCTGGGTAGGATTTC+TGG | - | chr7.1:27902650-27902669 | MS.gene016221:CDS | 50.0% |
| ! | GAGTTGTCAGGCCAGTTTTC+AGG | - | chr7.1:27903759-27903778 | MS.gene016221:intron | 50.0% |
| ! | GCGCACACCGTCAATTGTTT+TGG | - | chr7.1:27903194-27903213 | MS.gene016221:intron | 50.0% |
| ! | GCTCAAAGTACTTGCTTGGC+TGG | - | chr7.1:27903461-27903480 | MS.gene016221:intron | 50.0% |
| ! | GGCTGGTGTCAAGGAATGTA+TGG | - | chr7.1:27903478-27903497 | MS.gene016221:intron | 50.0% |
| ! | GGTTTTGCGGTTGGAATGCA+TGG | - | chr7.1:27903287-27903306 | MS.gene016221:intron | 50.0% |
| ! | GTAGAATGCATGCTCTGGGT+AGG | - | chr7.1:27902642-27902661 | MS.gene016221:CDS | 50.0% |
| ! | TACTTGCTTGGCTGGTGTCA+AGG | - | chr7.1:27903469-27903488 | MS.gene016221:intron | 50.0% |
| ! | TGCAACTGAGCAGGGTTTTG+CGG | - | chr7.1:27903274-27903293 | MS.gene016221:intron | 50.0% |
| AGATGGGGTTATGGGGCTAC+TGG | - | chr7.1:27903578-27903597 | MS.gene016221:intron | 55.0% | |
| AGCTGCTTGTGTAGGCTTCC+AGG | + | chr7.1:27902412-27902431 | None:intergenic | 55.0% | |
| ! | ACTGAGCAGGGTTTTGCGGT+TGG | - | chr7.1:27903278-27903297 | MS.gene016221:intron | 55.0% |
| !! | GTTGGTGGCACAACTGGTGA+AGG | - | chr7.1:27903134-27903153 | MS.gene016221:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 27901153 | 27903922 | 27901153 | ID=MS.gene016221 |
| chr7.1 | mRNA | 27901153 | 27903922 | 27901153 | ID=MS.gene016221.t1;Parent=MS.gene016221 |
| chr7.1 | exon | 27903831 | 27903922 | 27903831 | ID=MS.gene016221.t1.exon1;Parent=MS.gene016221.t1 |
| chr7.1 | CDS | 27903831 | 27903922 | 27903831 | ID=cds.MS.gene016221.t1;Parent=MS.gene016221.t1 |
| chr7.1 | exon | 27902594 | 27902674 | 27902594 | ID=MS.gene016221.t1.exon2;Parent=MS.gene016221.t1 |
| chr7.1 | CDS | 27902594 | 27902674 | 27902594 | ID=cds.MS.gene016221.t1;Parent=MS.gene016221.t1 |
| chr7.1 | exon | 27901153 | 27902080 | 27901153 | ID=MS.gene016221.t1.exon3;Parent=MS.gene016221.t1 |
| chr7.1 | CDS | 27901153 | 27902080 | 27901153 | ID=cds.MS.gene016221.t1;Parent=MS.gene016221.t1 |
| Gene Sequence |
| Protein sequence |
