Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07198.t1 | XP_013469186.1 | 98.6 | 366 | 5 | 0 | 1 | 366 | 1 | 366 | 2.80E-214 | 754.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07198.t1 | Q42800 | 89.6 | 327 | 34 | 0 | 40 | 366 | 6 | 332 | 4.9e-175 | 615.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07198.t1 | A0A072VMI5 | 98.6 | 366 | 5 | 0 | 1 | 366 | 1 | 366 | 2.0e-214 | 754.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07198 | MS.gene27569 | PPI |
| MS.gene42158 | MS.gene07198 | PPI |
| MS.gene016221 | MS.gene07198 | PPI |
| MS.gene005617 | MS.gene07198 | PPI |
| MS.gene20715 | MS.gene07198 | PPI |
| MS.gene03038 | MS.gene07198 | PPI |
| MS.gene07198 | MS.gene96090 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07198.t1 | MTR_1g088775 | 98.634 | 366 | 5 | 0 | 1 | 366 | 1 | 366 | 0.0 | 755 |
| MS.gene07198.t1 | MTR_7g075090 | 92.077 | 366 | 29 | 0 | 1 | 366 | 1 | 366 | 0.0 | 719 |
| MS.gene07198.t1 | MTR_8g036040 | 64.481 | 366 | 122 | 1 | 1 | 366 | 1 | 358 | 1.08e-179 | 503 |
| MS.gene07198.t1 | MTR_8g036035 | 64.228 | 369 | 122 | 4 | 1 | 366 | 1 | 362 | 1.49e-168 | 474 |
| MS.gene07198.t1 | MTR_8g036020 | 68.910 | 312 | 96 | 1 | 55 | 366 | 18 | 328 | 1.92e-160 | 452 |
| MS.gene07198.t1 | MTR_8g036050 | 63.462 | 312 | 109 | 1 | 55 | 366 | 1 | 307 | 4.67e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07198.t1 | AT2G45440 | 75.683 | 366 | 88 | 1 | 1 | 366 | 1 | 365 | 0.0 | 582 |
| MS.gene07198.t1 | AT3G60880 | 74.863 | 366 | 91 | 1 | 1 | 366 | 1 | 365 | 0.0 | 570 |
| MS.gene07198.t1 | AT3G60880 | 74.590 | 366 | 91 | 1 | 1 | 366 | 1 | 364 | 0.0 | 568 |
Find 89 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAATAGAATTTGCCAATT+TGG | 0.151527 | 1.4:+70482468 | MS.gene07198:CDS |
| CCGCATTGGGAGGTGGAAAT+TGG | 0.197311 | 1.4:-70481104 | None:intergenic |
| ACCTATTTCCTTCACCAAAT+TGG | 0.206485 | 1.4:-70482482 | None:intergenic |
| GGTGGGAAAATCAAGGTTAT+TGG | 0.223073 | 1.4:+70481872 | MS.gene07198:CDS |
| GATTATTCAGGAACTCTTAC+TGG | 0.297793 | 1.4:+70481056 | MS.gene07198:intron |
| ATCAAGGTTATTGGAAATAC+TGG | 0.303578 | 1.4:+70481881 | MS.gene07198:CDS |
| GCACACACAGTTAATTGTTT+TGG | 0.304017 | 1.4:+70481851 | MS.gene07198:CDS |
| GCCAATTTGGTGAAGGAAAT+AGG | 0.310672 | 1.4:+70482481 | MS.gene07198:CDS |
| GTTGCAAGCAATCTGATTCC+TGG | 0.342044 | 1.4:+70482268 | MS.gene07198:CDS |
| GTGTTCAAACCAATGGGATT+TGG | 0.372649 | 1.4:-70482376 | None:intergenic |
| TGTTGGAACTGAAGACGTTC+AGG | 0.373512 | 1.4:+70482516 | MS.gene07198:CDS |
| AGCTCTTGCCTTTGATTGAC+TGG | 0.378010 | 1.4:+70482341 | MS.gene07198:CDS |
| ATCAATGCCATGATGCTAGA+TGG | 0.385109 | 1.4:+70482218 | MS.gene07198:CDS |
| TTGCTCAACTTGGAGTTGTC+AGG | 0.401383 | 1.4:+70482404 | MS.gene07198:CDS |
| ACAAATGGCAACCTGAAAAC+TGG | 0.401923 | 1.4:-70482427 | None:intergenic |
| CTTTCAAAGTGTGCTTTCCA+TGG | 0.406034 | 1.4:+70482024 | MS.gene07198:CDS |
| AACACGGCTCTTGCTCAACT+TGG | 0.407658 | 1.4:+70482394 | MS.gene07198:CDS |
| GGAAGGATGAACCGGAAAAC+CGG | 0.409763 | 1.4:-70480568 | None:intergenic |
| GCTGCATTGAAGAGCTATAC+TGG | 0.412042 | 1.4:+70480528 | MS.gene07198:CDS |
| TCATCTCAAAACTCCGCATT+GGG | 0.420171 | 1.4:-70481117 | None:intergenic |
| CTTCATATAAACCCTTACTA+TGG | 0.428403 | 1.4:+70481971 | MS.gene07198:CDS |
| GGAGTTGAAGGTGTTATTGT+TGG | 0.429517 | 1.4:+70481773 | MS.gene07198:CDS |
| CATAGTAAGGGTTTATATGA+AGG | 0.438848 | 1.4:-70481970 | None:intergenic |
| TTACTATGGCAAAACCTCAT+TGG | 0.439136 | 1.4:+70481985 | MS.gene07198:CDS |
| TATAATGTGCCTTCACGAAC+TGG | 0.441534 | 1.4:+70482061 | MS.gene07198:CDS |
| GTTATTGTTGGTGGCACAAC+TGG | 0.447799 | 1.4:+70481785 | MS.gene07198:CDS |
| CTTAGCTCAAAATACTTGCT+TGG | 0.461095 | 1.4:+70482114 | MS.gene07198:CDS |
| GCTCAAAATACTTGCTTGGC+TGG | 0.463469 | 1.4:+70482118 | MS.gene07198:CDS |
| TTCATCTCAAAACTCCGCAT+TGG | 0.466411 | 1.4:-70481118 | None:intergenic |
| GTGAAGGTCAATTAATGAGC+TGG | 0.470889 | 1.4:+70481807 | MS.gene07198:CDS |
| ATGCGAGAACTCATGTTTGA+GGG | 0.476788 | 1.4:+70482295 | MS.gene07198:CDS |
| TCAAGATCAAATCGACCATC+AGG | 0.480309 | 1.4:-70481713 | None:intergenic |
| GTTGAAGGTGTTATTGTTGG+TGG | 0.483414 | 1.4:+70481776 | MS.gene07198:CDS |
| GGTGTCTGCTTCAGAGGATC+CGG | 0.484695 | 1.4:+70480549 | MS.gene07198:CDS |
| CAAAACTCCGCATTGGGAGG+TGG | 0.487292 | 1.4:-70481111 | None:intergenic |
| CATGATGCTAGATGGGGTTA+TGG | 0.493610 | 1.4:+70482226 | MS.gene07198:CDS |
| TACTTGCTTGGCTGGTGTCA+AGG | 0.500800 | 1.4:+70482126 | MS.gene07198:CDS |
| CAGATCGAGAGTGGAGTTGA+AGG | 0.501168 | 1.4:+70481761 | MS.gene07198:CDS |
| ATAGAATCGTTGTGTGGAGC+GGG | 0.501345 | 1.4:+70482188 | MS.gene07198:CDS |
| AATGCGAGAACTCATGTTTG+AGG | 0.508177 | 1.4:+70482294 | MS.gene07198:CDS |
| GTAAGATCGGAAGGATGAAC+CGG | 0.510311 | 1.4:-70480576 | None:intergenic |
| AACCAATGGGATTTGGCATG+TGG | 0.510972 | 1.4:-70482369 | None:intergenic |
| TATACTGGTGTCTGCTTCAG+AGG | 0.514396 | 1.4:+70480543 | MS.gene07198:CDS |
| GCAATTCATGCCACTGAGCA+AGG | 0.519046 | 1.4:+70481923 | MS.gene07198:CDS |
| TTTCAAAGTGTGCTTTCCAT+GGG | 0.520623 | 1.4:+70482025 | MS.gene07198:CDS |
| GATTTCACAGCTGCTTGTGT+AGG | 0.522599 | 1.4:-70481082 | None:intergenic |
| AAGAGCTTAGAATTCAATGT+AGG | 0.522936 | 1.4:-70482325 | None:intergenic |
| AAGAGCCGTGTTCAAACCAA+TGG | 0.526094 | 1.4:-70482383 | None:intergenic |
| TCTAATGGGAGAGGTACAAA+TGG | 0.526400 | 1.4:-70482442 | None:intergenic |
| AATCGACCATCAGGTAGGTA+TGG | 0.528759 | 1.4:-70481704 | None:intergenic |
| AGAATTTGCCAATTTGGTGA+AGG | 0.533742 | 1.4:+70482474 | MS.gene07198:CDS |
| CAAAACCTCATTGGATGGTA+TGG | 0.535451 | 1.4:+70481994 | MS.gene07198:CDS |
| AGATGGGGTTATGGAGCTAC+GGG | 0.542357 | 1.4:+70482235 | MS.gene07198:CDS |
| AGGAATGTGTGGGAAATGAC+AGG | 0.543586 | 1.4:+70482146 | MS.gene07198:CDS |
| TCTTGAAGCATACGATGCCT+TGG | 0.545550 | 1.4:+70481730 | MS.gene07198:CDS |
| TTCCACATGCCAAATCCCAT+TGG | 0.545798 | 1.4:+70482367 | MS.gene07198:CDS |
| TAGATGGGGTTATGGAGCTA+CGG | 0.548084 | 1.4:+70482234 | MS.gene07198:CDS |
| GGCTGGTGTCAAGGAATGTG+TGG | 0.556357 | 1.4:+70482135 | MS.gene07198:CDS |
| CATAACCCCATCTAGCATCA+TGG | 0.567567 | 1.4:-70482225 | None:intergenic |
| TTGTTAGTAGTAAGATCGGA+AGG | 0.567613 | 1.4:-70480585 | None:intergenic |
| TCAATGCCATGATGCTAGAT+GGG | 0.567969 | 1.4:+70482219 | MS.gene07198:CDS |
| TGGAAAAGCCAGTCAATCAA+AGG | 0.572095 | 1.4:-70482349 | None:intergenic |
| TATGGCAAAACCTCATTGGA+TGG | 0.575275 | 1.4:+70481989 | MS.gene07198:CDS |
| ATATATGATCGTGGGTCCCA+TGG | 0.576230 | 1.4:-70482041 | None:intergenic |
| ATAGTAAGGGTTTATATGAA+GGG | 0.577466 | 1.4:-70481969 | None:intergenic |
| AGAGCCGTGTTCAAACCAAT+GGG | 0.577523 | 1.4:-70482382 | None:intergenic |
| GTAAATATGCAGATCGAGAG+TGG | 0.578320 | 1.4:+70481752 | MS.gene07198:CDS |
| TGAAGGTCAATTAATGAGCT+GGG | 0.584644 | 1.4:+70481808 | MS.gene07198:CDS |
| TATTTACAGGACTTGTACAG+AGG | 0.599967 | 1.4:+70481643 | MS.gene07198:intron |
| ATGAGTTCTCGCATTAAACC+AGG | 0.602598 | 1.4:-70482286 | None:intergenic |
| AATAGAATCGTTGTGTGGAG+CGG | 0.613867 | 1.4:+70482187 | MS.gene07198:CDS |
| AAATCCCATTGGTTTGAACA+CGG | 0.620889 | 1.4:+70482378 | MS.gene07198:CDS |
| TCTCAAAACTCCGCATTGGG+AGG | 0.623035 | 1.4:-70481114 | None:intergenic |
| GGCACATTATATATGATCGT+GGG | 0.623516 | 1.4:-70482049 | None:intergenic |
| AGGCACATTATATATGATCG+TGG | 0.625176 | 1.4:-70482050 | None:intergenic |
| AAAACTCCATACCTACCTGA+TGG | 0.627623 | 1.4:+70481698 | MS.gene07198:CDS |
| ATACTGGAAGTAACTCGACA+AGG | 0.635535 | 1.4:+70481897 | MS.gene07198:CDS |
| TACTGGAAGTAACTCGACAA+GGG | 0.637824 | 1.4:+70481898 | MS.gene07198:CDS |
| CTCGATCTGCATATTTACCA+AGG | 0.639513 | 1.4:-70481747 | None:intergenic |
| AACTGCAAAACCTTGCTCAG+TGG | 0.649047 | 1.4:-70481933 | None:intergenic |
| ATGTCTTGACCAGTTCGTGA+AGG | 0.650374 | 1.4:-70482070 | None:intergenic |
| TATTCAGGAACTCTTACTGG+AGG | 0.652852 | 1.4:+70481059 | MS.gene07198:intron |
| GTTGGTGGCACAACTGGTGA+AGG | 0.663404 | 1.4:+70481791 | MS.gene07198:CDS |
| GCTGGTGTCAAGGAATGTGT+GGG | 0.663954 | 1.4:+70482136 | MS.gene07198:CDS |
| CTGATAATAGAATCGTTGTG+TGG | 0.669847 | 1.4:+70482182 | MS.gene07198:CDS |
| GATCAAATCGACCATCAGGT+AGG | 0.678861 | 1.4:-70481709 | None:intergenic |
| AGCAACCATACCATCCAATG+AGG | 0.685283 | 1.4:-70481999 | None:intergenic |
| CCAATTTCCACCTCCCAATG+CGG | 0.691962 | 1.4:+70481104 | MS.gene07198:CDS |
| CAATGCCATGATGCTAGATG+GGG | 0.711874 | 1.4:+70482220 | MS.gene07198:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTTCAAAATAAAGAAAA+TGG | - | chr1.4:70480631-70480650 | None:intergenic | 15.0% |
| !! | AAGCTATATATTGTATTTAC+AGG | + | chr1.4:70481630-70481649 | MS.gene07198:intron | 20.0% |
| !! | AATAAAAAGACGAAAACAAA+TGG | - | chr1.4:70481271-70481290 | None:intergenic | 20.0% |
| !! | AATGAATTCGATGAAATAAA+CGG | + | chr1.4:70480794-70480813 | MS.gene07198:intron | 20.0% |
| !! | TATTGTGATTTATGATGAAA+CGG | + | chr1.4:70481327-70481346 | MS.gene07198:intron | 20.0% |
| !!! | AATCATGAAATCACAATTTT+TGG | + | chr1.4:70481600-70481619 | MS.gene07198:intron | 20.0% |
| !!! | AATTCTATTCTTTTCTCTAA+TGG | - | chr1.4:70482460-70482479 | None:intergenic | 20.0% |
| !!! | ATGATTTTAATGATGATGAA+GGG | + | chr1.4:70480842-70480861 | MS.gene07198:intron | 20.0% |
| !!! | ATTCTATTCTTTTCTCTAAT+GGG | - | chr1.4:70482459-70482478 | None:intergenic | 20.0% |
| !!! | TATGATTTTAATGATGATGA+AGG | + | chr1.4:70480841-70480860 | MS.gene07198:intron | 20.0% |
| !!! | TTCTAAGGAGTATATTTAAA+AGG | + | chr1.4:70481521-70481540 | MS.gene07198:intron | 20.0% |
| ! | AAGAATAGAATTTGCCAATT+TGG | + | chr1.4:70482468-70482487 | MS.gene07198:CDS | 25.0% |
| ! | AATCTCAAATTGAATGATAG+AGG | - | chr1.4:70481405-70481424 | None:intergenic | 25.0% |
| ! | AGTATCAAAACTAATGAATG+TGG | - | chr1.4:70481176-70481195 | None:intergenic | 25.0% |
| ! | ATAGTAAGGGTTTATATGAA+GGG | - | chr1.4:70481972-70481991 | None:intergenic | 25.0% |
| ! | ATTGTGATTTATGATGAAAC+GGG | + | chr1.4:70481328-70481347 | MS.gene07198:intron | 25.0% |
| ! | GAAAAACAAATCCAAATTAG+TGG | - | chr1.4:70481383-70481402 | None:intergenic | 25.0% |
| !! | GTTTTTGTTAGTAGTAAGAT+CGG | - | chr1.4:70480592-70480611 | None:intergenic | 25.0% |
| !! | TAAGGAGTATATTTAAAAGG+TGG | + | chr1.4:70481524-70481543 | MS.gene07198:intron | 25.0% |
| !! | TTGAGAGTATAATTTAGCTA+AGG | + | chr1.4:70480893-70480912 | MS.gene07198:intron | 25.0% |
| !!! | AGATTTTGTTTTGACATACA+AGG | + | chr1.4:70481420-70481439 | MS.gene07198:intron | 25.0% |
| !!! | GTTTTCGTCTTTTTATTTTC+TGG | + | chr1.4:70481274-70481293 | MS.gene07198:intron | 25.0% |
| !!! | TTTTGAGATGAAAAATAGGT+TGG | + | chr1.4:70481129-70481148 | MS.gene07198:intron | 25.0% |
| AAGAGCTTAGAATTCAATGT+AGG | - | chr1.4:70482328-70482347 | None:intergenic | 30.0% | |
| ACAAAAGCAACAACACAAAT+AGG | - | chr1.4:70481577-70481596 | None:intergenic | 30.0% | |
| AGCACAATCAATATCAATCA+CGG | - | chr1.4:70480974-70480993 | None:intergenic | 30.0% | |
| ATCAAGGTTATTGGAAATAC+TGG | + | chr1.4:70481881-70481900 | MS.gene07198:CDS | 30.0% | |
| CATAGTAAGGGTTTATATGA+AGG | - | chr1.4:70481973-70481992 | None:intergenic | 30.0% | |
| CTTCATATAAACCCTTACTA+TGG | + | chr1.4:70481971-70481990 | MS.gene07198:CDS | 30.0% | |
| CTTGCTTATTTCCACTAATT+TGG | + | chr1.4:70481369-70481388 | MS.gene07198:intron | 30.0% | |
| GAAAATGGAAAATTTGAACC+TGG | - | chr1.4:70480616-70480635 | None:intergenic | 30.0% | |
| GTTTGTCTGTATGATTATTC+AGG | + | chr1.4:70481044-70481063 | MS.gene07198:intron | 30.0% | |
| TTACTACTAACAAAAACACC+AGG | + | chr1.4:70480595-70480614 | MS.gene07198:CDS | 30.0% | |
| ! | AGATTTTGTTAGCATGTATG+AGG | + | chr1.4:70480947-70480966 | MS.gene07198:intron | 30.0% |
| !! | ATTGCAGCTGAATTTGATTT+TGG | + | chr1.4:70480738-70480757 | MS.gene07198:intron | 30.0% |
| !! | TTGATTTGTCTATATGCATG+TGG | + | chr1.4:70480715-70480734 | MS.gene07198:intron | 30.0% |
| !!! | ACACAGTTAATTGTTTTGGT+GGG | + | chr1.4:70481855-70481874 | MS.gene07198:CDS | 30.0% |
| !!! | GCTAAGTTTTGAATTACATG+CGG | - | chr1.4:70482100-70482119 | None:intergenic | 30.0% |
| !!! | GGAGTTTTGAGATGAAAAAT+AGG | + | chr1.4:70481125-70481144 | MS.gene07198:CDS | 30.0% |
| AAGCATTATTCCACTAAGTG+GGG | + | chr1.4:70481211-70481230 | MS.gene07198:intron | 35.0% | |
| ACCTATTTCCTTCACCAAAT+TGG | - | chr1.4:70482485-70482504 | None:intergenic | 35.0% | |
| AGGCACATTATATATGATCG+TGG | - | chr1.4:70482053-70482072 | None:intergenic | 35.0% | |
| CAAGCATTATTCCACTAAGT+GGG | + | chr1.4:70481210-70481229 | MS.gene07198:intron | 35.0% | |
| CTGATAATAGAATCGTTGTG+TGG | + | chr1.4:70482182-70482201 | MS.gene07198:CDS | 35.0% | |
| CTTAGCTCAAAATACTTGCT+TGG | + | chr1.4:70482114-70482133 | MS.gene07198:CDS | 35.0% | |
| GATTATTCAGGAACTCTTAC+TGG | + | chr1.4:70481056-70481075 | MS.gene07198:intron | 35.0% | |
| GCACAATCAATATCAATCAC+GGG | - | chr1.4:70480973-70480992 | None:intergenic | 35.0% | |
| GGCACATTATATATGATCGT+GGG | - | chr1.4:70482052-70482071 | None:intergenic | 35.0% | |
| TATTTACAGGACTTGTACAG+AGG | + | chr1.4:70481643-70481662 | MS.gene07198:intron | 35.0% | |
| TGAAGGTCAATTAATGAGCT+GGG | + | chr1.4:70481808-70481827 | MS.gene07198:CDS | 35.0% | |
| TTACTATGGCAAAACCTCAT+TGG | + | chr1.4:70481985-70482004 | MS.gene07198:CDS | 35.0% | |
| TTGTTAGTAGTAAGATCGGA+AGG | - | chr1.4:70480588-70480607 | None:intergenic | 35.0% | |
| TTTCAAAGTGTGCTTTCCAT+GGG | + | chr1.4:70482025-70482044 | MS.gene07198:CDS | 35.0% | |
| ! | AATGAGGTTTTGCCATAGTA+AGG | - | chr1.4:70481986-70482005 | None:intergenic | 35.0% |
| ! | AGAATTTGCCAATTTGGTGA+AGG | + | chr1.4:70482474-70482493 | MS.gene07198:CDS | 35.0% |
| ! | ATAGGTCGTCAACATTTTGT+TGG | + | chr1.4:70482499-70482518 | MS.gene07198:CDS | 35.0% |
| ! | ATGAGGTTTTGCCATAGTAA+GGG | - | chr1.4:70481985-70482004 | None:intergenic | 35.0% |
| ! | ATTCTTTTCTCTAATGGGAG+AGG | - | chr1.4:70482454-70482473 | None:intergenic | 35.0% |
| ! | GCACACACAGTTAATTGTTT+TGG | + | chr1.4:70481851-70481870 | MS.gene07198:CDS | 35.0% |
| ! | TTCTGGAAGAGACACAAATA+TGG | + | chr1.4:70481291-70481310 | MS.gene07198:intron | 35.0% |
| !! | AAATCCCATTGGTTTGAACA+CGG | + | chr1.4:70482378-70482397 | MS.gene07198:CDS | 35.0% |
| !! | AGGTAGGTATGGAGTTTTAA+TGG | - | chr1.4:70481696-70481715 | None:intergenic | 35.0% |
| !! | TGATGACAACGACTTTTTCT+TGG | + | chr1.4:70482543-70482562 | MS.gene07198:CDS | 35.0% |
| !!! | AAGTTTTGAATTACATGCGG+TGG | - | chr1.4:70482097-70482116 | None:intergenic | 35.0% |
| !!! | CACACAGTTAATTGTTTTGG+TGG | + | chr1.4:70481854-70481873 | MS.gene07198:CDS | 35.0% |
| !!! | TTGTTTTGGTGGGAAAATCA+AGG | + | chr1.4:70481865-70481884 | MS.gene07198:CDS | 35.0% |
| AAAACTCCATACCTACCTGA+TGG | + | chr1.4:70481698-70481717 | MS.gene07198:CDS | 40.0% | |
| AATAGAATCGTTGTGTGGAG+CGG | + | chr1.4:70482187-70482206 | MS.gene07198:CDS | 40.0% | |
| AATGCGAGAACTCATGTTTG+AGG | + | chr1.4:70482294-70482313 | MS.gene07198:CDS | 40.0% | |
| ACAAATGGCAACCTGAAAAC+TGG | - | chr1.4:70482430-70482449 | None:intergenic | 40.0% | |
| ATACTCCTTAGAACATGCAG+CGG | - | chr1.4:70481514-70481533 | None:intergenic | 40.0% | |
| ATACTGGAAGTAACTCGACA+AGG | + | chr1.4:70481897-70481916 | MS.gene07198:CDS | 40.0% | |
| ATCAATGCCATGATGCTAGA+TGG | + | chr1.4:70482218-70482237 | MS.gene07198:CDS | 40.0% | |
| ATGAGTTCTCGCATTAAACC+AGG | - | chr1.4:70482289-70482308 | None:intergenic | 40.0% | |
| ATGCGAGAACTCATGTTTGA+GGG | + | chr1.4:70482295-70482314 | MS.gene07198:CDS | 40.0% | |
| ATTATTCCACTAAGTGGGGT+TGG | + | chr1.4:70481215-70481234 | MS.gene07198:intron | 40.0% | |
| CAAAACCTCATTGGATGGTA+TGG | + | chr1.4:70481994-70482013 | MS.gene07198:CDS | 40.0% | |
| CCAAGCATTATTCCACTAAG+TGG | + | chr1.4:70481209-70481228 | MS.gene07198:intron | 40.0% | |
| CCACTTAGTGGAATAATGCT+TGG | - | chr1.4:70481212-70481231 | None:intergenic | 40.0% | |
| CTCGATCTGCATATTTACCA+AGG | - | chr1.4:70481750-70481769 | None:intergenic | 40.0% | |
| CTTTCAAAGTGTGCTTTCCA+TGG | + | chr1.4:70482024-70482043 | MS.gene07198:CDS | 40.0% | |
| GGTGGGAAAATCAAGGTTAT+TGG | + | chr1.4:70481872-70481891 | MS.gene07198:CDS | 40.0% | |
| GTAAATATGCAGATCGAGAG+TGG | + | chr1.4:70481752-70481771 | MS.gene07198:CDS | 40.0% | |
| GTGAAGGTCAATTAATGAGC+TGG | + | chr1.4:70481807-70481826 | MS.gene07198:CDS | 40.0% | |
| GTGTTCAAACCAATGGGATT+TGG | - | chr1.4:70482379-70482398 | None:intergenic | 40.0% | |
| TACTGGAAGTAACTCGACAA+GGG | + | chr1.4:70481898-70481917 | MS.gene07198:CDS | 40.0% | |
| TATAATGTGCCTTCACGAAC+TGG | + | chr1.4:70482061-70482080 | MS.gene07198:CDS | 40.0% | |
| TATGGCAAAACCTCATTGGA+TGG | + | chr1.4:70481989-70482008 | MS.gene07198:CDS | 40.0% | |
| TATTCAGGAACTCTTACTGG+AGG | + | chr1.4:70481059-70481078 | MS.gene07198:intron | 40.0% | |
| TCAAGATCAAATCGACCATC+AGG | - | chr1.4:70481716-70481735 | None:intergenic | 40.0% | |
| TCAATGCCATGATGCTAGAT+GGG | + | chr1.4:70482219-70482238 | MS.gene07198:CDS | 40.0% | |
| TCATCTCAAAACTCCGCATT+GGG | - | chr1.4:70481120-70481139 | None:intergenic | 40.0% | |
| TGGAAAAGCCAGTCAATCAA+AGG | - | chr1.4:70482352-70482371 | None:intergenic | 40.0% | |
| TTCATCTCAAAACTCCGCAT+TGG | - | chr1.4:70481121-70481140 | None:intergenic | 40.0% | |
| ! | GCCAATTTGGTGAAGGAAAT+AGG | + | chr1.4:70482481-70482500 | MS.gene07198:CDS | 40.0% |
| ! | TCTAATGGGAGAGGTACAAA+TGG | - | chr1.4:70482445-70482464 | None:intergenic | 40.0% |
| !! | GGAGTTGAAGGTGTTATTGT+TGG | + | chr1.4:70481773-70481792 | MS.gene07198:CDS | 40.0% |
| !! | GTTGAAGGTGTTATTGTTGG+TGG | + | chr1.4:70481776-70481795 | MS.gene07198:CDS | 40.0% |
| AACCAATGGGATTTGGCATG+TGG | - | chr1.4:70482372-70482391 | None:intergenic | 45.0% | |
| AACTGCAAAACCTTGCTCAG+TGG | - | chr1.4:70481936-70481955 | None:intergenic | 45.0% | |
| AAGAGCCGTGTTCAAACCAA+TGG | - | chr1.4:70482386-70482405 | None:intergenic | 45.0% | |
| AATCGACCATCAGGTAGGTA+TGG | - | chr1.4:70481707-70481726 | None:intergenic | 45.0% | |
| AGAGCCGTGTTCAAACCAAT+GGG | - | chr1.4:70482385-70482404 | None:intergenic | 45.0% | |
| AGCAACCATACCATCCAATG+AGG | - | chr1.4:70482002-70482021 | None:intergenic | 45.0% | |
| AGCTCTTGCCTTTGATTGAC+TGG | + | chr1.4:70482341-70482360 | MS.gene07198:CDS | 45.0% | |
| AGGAATGTGTGGGAAATGAC+AGG | + | chr1.4:70482146-70482165 | MS.gene07198:CDS | 45.0% | |
| ATAGAATCGTTGTGTGGAGC+GGG | + | chr1.4:70482188-70482207 | MS.gene07198:CDS | 45.0% | |
| ATATATGATCGTGGGTCCCA+TGG | - | chr1.4:70482044-70482063 | None:intergenic | 45.0% | |
| ATGTCTTGACCAGTTCGTGA+AGG | - | chr1.4:70482073-70482092 | None:intergenic | 45.0% | |
| CAATGCCATGATGCTAGATG+GGG | + | chr1.4:70482220-70482239 | MS.gene07198:CDS | 45.0% | |
| CATAACCCCATCTAGCATCA+TGG | - | chr1.4:70482228-70482247 | None:intergenic | 45.0% | |
| CATGATGCTAGATGGGGTTA+TGG | + | chr1.4:70482226-70482245 | MS.gene07198:CDS | 45.0% | |
| GATCAAATCGACCATCAGGT+AGG | - | chr1.4:70481712-70481731 | None:intergenic | 45.0% | |
| GATTTCACAGCTGCTTGTGT+AGG | - | chr1.4:70481085-70481104 | None:intergenic | 45.0% | |
| GCTCAAAATACTTGCTTGGC+TGG | + | chr1.4:70482118-70482137 | MS.gene07198:CDS | 45.0% | |
| GCTGCATTGAAGAGCTATAC+TGG | + | chr1.4:70480528-70480547 | MS.gene07198:CDS | 45.0% | |
| GTAAGATCGGAAGGATGAAC+CGG | - | chr1.4:70480579-70480598 | None:intergenic | 45.0% | |
| GTTGCAAGCAATCTGATTCC+TGG | + | chr1.4:70482268-70482287 | MS.gene07198:CDS | 45.0% | |
| TAGATGGGGTTATGGAGCTA+CGG | + | chr1.4:70482234-70482253 | MS.gene07198:CDS | 45.0% | |
| TATACTGGTGTCTGCTTCAG+AGG | + | chr1.4:70480543-70480562 | MS.gene07198:CDS | 45.0% | |
| TCTTGAAGCATACGATGCCT+TGG | + | chr1.4:70481730-70481749 | MS.gene07198:CDS | 45.0% | |
| TGTTGGAACTGAAGACGTTC+AGG | + | chr1.4:70482516-70482535 | MS.gene07198:CDS | 45.0% | |
| TTCCACATGCCAAATCCCAT+TGG | + | chr1.4:70482367-70482386 | MS.gene07198:CDS | 45.0% | |
| TTGCTCAACTTGGAGTTGTC+AGG | + | chr1.4:70482404-70482423 | MS.gene07198:CDS | 45.0% | |
| ! | ACTGAGCAAGGTTTTGCAGT+TGG | + | chr1.4:70481935-70481954 | MS.gene07198:CDS | 45.0% |
| ! | GGTTTTGCAGTTGGAATGCA+TGG | + | chr1.4:70481944-70481963 | MS.gene07198:CDS | 45.0% |
| !! | GTTATTGTTGGTGGCACAAC+TGG | + | chr1.4:70481785-70481804 | MS.gene07198:CDS | 45.0% |
| !! | AAACATTAAATAAAAAAAAT+TGG | - | chr1.4:70481028-70481047 | None:intergenic | 5.0% |
| AACACGGCTCTTGCTCAACT+TGG | + | chr1.4:70482394-70482413 | MS.gene07198:CDS | 50.0% | |
| AGATGGGGTTATGGAGCTAC+GGG | + | chr1.4:70482235-70482254 | MS.gene07198:CDS | 50.0% | |
| CAGATCGAGAGTGGAGTTGA+AGG | + | chr1.4:70481761-70481780 | MS.gene07198:CDS | 50.0% | |
| CCAATTTCCACCTCCCAATG+CGG | + | chr1.4:70481104-70481123 | MS.gene07198:CDS | 50.0% | |
| CTAATGCCAACCCCACTTAG+TGG | - | chr1.4:70481224-70481243 | None:intergenic | 50.0% | |
| CTGTACCGCTGCATGTTCTA+AGG | + | chr1.4:70481506-70481525 | MS.gene07198:intron | 50.0% | |
| GCAATTCATGCCACTGAGCA+AGG | + | chr1.4:70481923-70481942 | MS.gene07198:CDS | 50.0% | |
| GGAAGGATGAACCGGAAAAC+CGG | - | chr1.4:70480571-70480590 | None:intergenic | 50.0% | |
| TCTCAAAACTCCGCATTGGG+AGG | - | chr1.4:70481117-70481136 | None:intergenic | 50.0% | |
| ! | CTTCAGAGGATCCGGTTTTC+CGG | + | chr1.4:70480557-70480576 | MS.gene07198:CDS | 50.0% |
| ! | GAGTTGTCAGGCCAGTTTTC+AGG | + | chr1.4:70482416-70482435 | MS.gene07198:CDS | 50.0% |
| ! | GCTGGTGTCAAGGAATGTGT+GGG | + | chr1.4:70482136-70482155 | MS.gene07198:CDS | 50.0% |
| ! | TACTTGCTTGGCTGGTGTCA+AGG | + | chr1.4:70482126-70482145 | MS.gene07198:CDS | 50.0% |
| AAGGTGGTCTCGCTTGCTTC+TGG | + | chr1.4:70481540-70481559 | MS.gene07198:intron | 55.0% | |
| CAAAACTCCGCATTGGGAGG+TGG | - | chr1.4:70481114-70481133 | None:intergenic | 55.0% | |
| CCGCATTGGGAGGTGGAAAT+TGG | - | chr1.4:70481107-70481126 | None:intergenic | 55.0% | |
| GGTGTCTGCTTCAGAGGATC+CGG | + | chr1.4:70480549-70480568 | MS.gene07198:CDS | 55.0% | |
| ! | CTCGCTTGCTTCTGGTGTCA+TGG | + | chr1.4:70481548-70481567 | MS.gene07198:intron | 55.0% |
| ! | GGCTGGTGTCAAGGAATGTG+TGG | + | chr1.4:70482135-70482154 | MS.gene07198:CDS | 55.0% |
| !! | GTTGGTGGCACAACTGGTGA+AGG | + | chr1.4:70481791-70481810 | MS.gene07198:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 70480525 | 70482579 | 70480525 | ID=MS.gene07198 |
| chr1.4 | mRNA | 70480525 | 70482579 | 70480525 | ID=MS.gene07198.t1;Parent=MS.gene07198 |
| chr1.4 | exon | 70480525 | 70480616 | 70480525 | ID=MS.gene07198.t1.exon1;Parent=MS.gene07198.t1 |
| chr1.4 | CDS | 70480525 | 70480616 | 70480525 | ID=cds.MS.gene07198.t1;Parent=MS.gene07198.t1 |
| chr1.4 | exon | 70481066 | 70481146 | 70481066 | ID=MS.gene07198.t1.exon2;Parent=MS.gene07198.t1 |
| chr1.4 | CDS | 70481066 | 70481146 | 70481066 | ID=cds.MS.gene07198.t1;Parent=MS.gene07198.t1 |
| chr1.4 | exon | 70481652 | 70482579 | 70481652 | ID=MS.gene07198.t1.exon3;Parent=MS.gene07198.t1 |
| chr1.4 | CDS | 70481652 | 70482579 | 70481652 | ID=cds.MS.gene07198.t1;Parent=MS.gene07198.t1 |
| Gene Sequence |
| Protein sequence |
