Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42158.t1 | XP_003623729.1 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 2.00E-212 | 748 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42158.t1 | Q42800 | 87.5 | 327 | 41 | 0 | 40 | 366 | 6 | 332 | 2.3e-172 | 606.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42158.t1 | G7L0A3 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 1.4e-212 | 748.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene42158 | 0.838543 | 2.70E-57 | -1.69E-46 |
| MS.gene049873 | MS.gene42158 | 0.807381 | 5.20E-50 | -1.69E-46 |
| MS.gene05045 | MS.gene42158 | 0.80432 | 2.29E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene42158 | 0.80476 | 1.85E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene42158 | 0.804642 | 1.96E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene42158 | 0.830561 | 2.74E-55 | -1.69E-46 |
| MS.gene051328 | MS.gene42158 | 0.80011 | 1.68E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene42158 | 0.828295 | 9.73E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene42158 | 0.825257 | 5.17E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene42158 | 0.862154 | 6.20E-64 | -1.69E-46 |
| MS.gene051957 | MS.gene42158 | 0.819581 | 1.08E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene42158 | 0.803777 | 2.96E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene42158 | 0.808195 | 3.49E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene42158 | 0.831415 | 1.69E-55 | -1.69E-46 |
| MS.gene053998 | MS.gene42158 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene42158 | 0.808904 | 2.46E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene42158 | 0.80517 | 1.52E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene42158 | -0.816778 | 4.64E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene42158 | 0.840489 | 8.43E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene42158 | 0.80309 | 4.11E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene42158 | 0.81101 | 8.67E-51 | -1.69E-46 |
| MS.gene056543 | MS.gene42158 | 0.80397 | 2.70E-49 | -1.69E-46 |
| MS.gene056545 | MS.gene42158 | 0.80934 | 1.99E-50 | -1.69E-46 |
| MS.gene056553 | MS.gene42158 | 0.821149 | 4.71E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene42158 | 0.804749 | 1.86E-49 | -1.69E-46 |
| MS.gene059015 | MS.gene42158 | 0.817134 | 3.86E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene42158 | 0.819188 | 1.32E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene42158 | 0.82401 | 1.02E-53 | -1.69E-46 |
| MS.gene061176 | MS.gene42158 | 0.804025 | 2.63E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene42158 | 0.803278 | 3.76E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene42158 | 0.803614 | 3.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42158 | MS.gene96090 | PPI |
| MS.gene42158 | MS.gene07198 | PPI |
| MS.gene42158 | MS.gene27569 | PPI |
| MS.gene016221 | MS.gene42158 | PPI |
| MS.gene005617 | MS.gene42158 | PPI |
| MS.gene42158 | MS.gene016221 | PPI |
| MS.gene20715 | MS.gene42158 | PPI |
| MS.gene03038 | MS.gene42158 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42158.t1 | MTR_7g075090 | 98.361 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 0.0 | 755 |
| MS.gene42158.t1 | MTR_1g088775 | 93.169 | 366 | 25 | 0 | 1 | 366 | 1 | 366 | 0.0 | 725 |
| MS.gene42158.t1 | MTR_8g036040 | 66.667 | 345 | 115 | 0 | 22 | 366 | 14 | 358 | 2.13e-176 | 494 |
| MS.gene42158.t1 | MTR_8g036035 | 63.488 | 367 | 128 | 3 | 1 | 366 | 1 | 362 | 9.14e-166 | 468 |
| MS.gene42158.t1 | MTR_8g036020 | 68.910 | 312 | 96 | 1 | 55 | 366 | 18 | 328 | 4.68e-161 | 454 |
| MS.gene42158.t1 | MTR_8g036050 | 63.782 | 312 | 108 | 1 | 55 | 366 | 1 | 307 | 1.31e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42158.t1 | AT2G45440 | 74.590 | 366 | 92 | 1 | 1 | 366 | 1 | 365 | 0.0 | 576 |
| MS.gene42158.t1 | AT3G60880 | 73.770 | 366 | 95 | 1 | 1 | 366 | 1 | 365 | 0.0 | 563 |
| MS.gene42158.t1 | AT3G60880 | 73.770 | 366 | 94 | 2 | 1 | 366 | 1 | 364 | 0.0 | 560 |
Find 101 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGAATATTAAGGTTAT+TGG | 0.186837 | 7.3:-30445119 | MS.gene42158:CDS |
| AAGGATAGAATTTGCCAATT+TGG | 0.190236 | 7.3:-30444523 | MS.gene42158:CDS |
| ACCAATTTCCTTCACCAAAT+TGG | 0.224725 | 7.3:+30444509 | None:intergenic |
| GCCAATTTGGTGAAGGAAAT+TGG | 0.226319 | 7.3:-30444510 | MS.gene42158:CDS |
| ATTAAGGTTATTGGAAATAC+TGG | 0.273517 | 7.3:-30445110 | MS.gene42158:CDS |
| TGTTGCAAGCAATTTGATTC+CGG | 0.308700 | 7.3:-30444724 | MS.gene42158:CDS |
| CATTATTCAGGAACTCTTCC+TGG | 0.320905 | 7.3:-30445943 | MS.gene42158:intron |
| GCGCACACCGTCAATTGTTT+TGG | 0.326575 | 7.3:-30445140 | MS.gene42158:CDS |
| AGCTGCTTGTGTAGGCTTCC+AGG | 0.338802 | 7.3:+30445925 | None:intergenic |
| CTTTCAAAGTGTGCTTTCCA+TGG | 0.342943 | 7.3:-30444967 | MS.gene42158:CDS |
| GCCATTTGTACCTCTCCCTT+TGG | 0.355708 | 7.3:-30444550 | MS.gene42158:CDS |
| CACGATGCTAGATGGGGTTA+TGG | 0.357163 | 7.3:-30444765 | MS.gene42158:CDS |
| TACCTCTCCCTTTGGAGAAA+AGG | 0.366582 | 7.3:-30444542 | MS.gene42158:CDS |
| GTGAAGGCCAACTAATGAAC+TGG | 0.368307 | 7.3:-30445184 | MS.gene42158:CDS |
| GTTGCAAGCAATTTGATTCC+GGG | 0.368402 | 7.3:-30444723 | MS.gene42158:CDS |
| TTAATGCGAGAGCTCATGTT+TGG | 0.368556 | 7.3:-30444699 | MS.gene42158:CDS |
| GTGTTCAAACCAATGGGATT+TGG | 0.372649 | 7.3:+30444615 | None:intergenic |
| AGCTCTTGCCTTTGATTGAC+TGG | 0.378010 | 7.3:-30444650 | MS.gene42158:CDS |
| TAATGCGAGAGCTCATGTTT+GGG | 0.389995 | 7.3:-30444698 | MS.gene42158:CDS |
| ACGATGCTAGATGGGGTTAT+GGG | 0.392947 | 7.3:-30444764 | MS.gene42158:CDS |
| ATGAATGCCACGATGCTAGA+TGG | 0.396310 | 7.3:-30444773 | MS.gene42158:CDS |
| TTGCTCAACTTGGAGTTGTC+AGG | 0.401383 | 7.3:-30444587 | MS.gene42158:CDS |
| AACACGGCTCTTGCTCAACT+TGG | 0.407658 | 7.3:-30444597 | MS.gene42158:CDS |
| GCTCTTCCCAGTTCATTAGT+TGG | 0.415200 | 7.3:+30445177 | None:intergenic |
| GGCTGGTGTCAAGGAATGTA+TGG | 0.417544 | 7.3:-30444856 | MS.gene42158:CDS |
| GCTACATTCAAGACCTATAC+TGG | 0.420080 | 7.3:-30447170 | MS.gene42158:CDS |
| TCATCTCATAACTACGCATT+GGG | 0.424346 | 7.3:+30445882 | None:intergenic |
| AGTTGCATGAATTGCTTCCC+TGG | 0.424932 | 7.3:+30445076 | None:intergenic |
| CTTCATATAAACCCTTACTA+TGG | 0.428403 | 7.3:-30445020 | MS.gene42158:CDS |
| AGATGGGGTTATGGGGCTAC+TGG | 0.429920 | 7.3:-30444756 | MS.gene42158:CDS |
| ACAAATGGCAGCCTGAAAAC+TGG | 0.430651 | 7.3:+30444564 | None:intergenic |
| TTTCAAAGTGTGCTTTCCAT+GGG | 0.432753 | 7.3:-30444966 | MS.gene42158:CDS |
| GGAGTTGAAGGTGTTATTGT+TGG | 0.435948 | 7.3:-30445218 | MS.gene42158:CDS |
| GTTATTGTTGGTGGCACAAC+TGG | 0.447799 | 7.3:-30445206 | MS.gene42158:CDS |
| GCTCAAAGTACTTGCTTGGC+TGG | 0.459949 | 7.3:-30444873 | MS.gene42158:CDS |
| TCATATATAATGTGCCTTCA+CGG | 0.466811 | 7.3:-30444935 | MS.gene42158:CDS |
| AGCAATTCATGCAACTGAGC+AGG | 0.472668 | 7.3:-30445069 | MS.gene42158:CDS |
| CTTAGCTCAAAGTACTTGCT+TGG | 0.473911 | 7.3:-30444877 | MS.gene42158:CDS |
| TTCATCTCATAACTACGCAT+TGG | 0.474360 | 7.3:+30445881 | None:intergenic |
| TATACTGGCGTATGCTTCAC+AGG | 0.477913 | 7.3:-30447155 | MS.gene42158:CDS |
| ATTCCCACCAAAACAATTGA+CGG | 0.482266 | 7.3:+30445133 | None:intergenic |
| CAAAACCTCCTTGGAAGGTA+TGG | 0.482290 | 7.3:-30444997 | MS.gene42158:CDS |
| GTTGAAGGTGTTATTGTTGG+TGG | 0.483414 | 7.3:-30445215 | MS.gene42158:CDS |
| TCAAGATCAAATCGACCGTC+AGG | 0.487193 | 7.3:+30445278 | None:intergenic |
| TTACTATGGCAAAACCTCCT+TGG | 0.496884 | 7.3:-30445006 | MS.gene42158:CDS |
| TATAATGTGCCTTCACGGAC+TGG | 0.501920 | 7.3:-30444930 | MS.gene42158:CDS |
| TTGTCAGTGGTAACATTGGA+AGG | 0.502303 | 7.3:+30447113 | None:intergenic |
| GTGAATATGCAGATTGAGAA+TGG | 0.503509 | 7.3:-30445239 | MS.gene42158:CDS |
| GATTTCACAGCTGCTTGTGT+AGG | 0.510543 | 7.3:+30445917 | None:intergenic |
| AACCAATGGGATTTGGCATG+TGG | 0.510972 | 7.3:+30444622 | None:intergenic |
| TACTTGCTTGGCTGGTGTCA+AGG | 0.511271 | 7.3:-30444865 | MS.gene42158:CDS |
| AGGAATGTATGGGAAATGAC+AGG | 0.516838 | 7.3:-30444845 | MS.gene42158:CDS |
| AAGAGCTTAGAATTCAATGT+AGG | 0.522936 | 7.3:+30444666 | None:intergenic |
| TGTTGGAACTGAAGACGTCC+AGG | 0.522988 | 7.3:-30444475 | MS.gene42158:CDS |
| AAGAGCCGTGTTCAAACCAA+TGG | 0.526094 | 7.3:+30444608 | None:intergenic |
| TCCAAAGGGAGAGGTACAAA+TGG | 0.530348 | 7.3:+30444549 | None:intergenic |
| AGAATTTGCCAATTTGGTGA+AGG | 0.533742 | 7.3:-30444517 | MS.gene42158:CDS |
| AATCGACCGTCAGGTAGGTA+TGG | 0.533788 | 7.3:+30445287 | None:intergenic |
| GGCACATTATATATGATTGT+GGG | 0.534618 | 7.3:+30444942 | None:intergenic |
| TGTGAAGCATACGCCAGTAT+AGG | 0.536807 | 7.3:+30447157 | None:intergenic |
| AGGCACATTATATATGATTG+TGG | 0.538234 | 7.3:+30444941 | None:intergenic |
| AATGCGAGAGCTCATGTTTG+GGG | 0.539435 | 7.3:-30444697 | MS.gene42158:CDS |
| CAGATTGAGAATGGAGTTGA+AGG | 0.544549 | 7.3:-30445230 | MS.gene42158:CDS |
| TTCCACATGCCAAATCCCAT+TGG | 0.545798 | 7.3:-30444624 | MS.gene42158:CDS |
| TCTTGAATCATATGATGCCT+TGG | 0.551015 | 7.3:-30445261 | MS.gene42158:CDS |
| TGAATGCCACGATGCTAGAT+GGG | 0.551513 | 7.3:-30444772 | MS.gene42158:CDS |
| GCAATTCATGCAACTGAGCA+GGG | 0.554140 | 7.3:-30445068 | MS.gene42158:CDS |
| AGTCGTCGTCATCAAGAACC+TGG | 0.556999 | 7.3:+30444457 | None:intergenic |
| TCTCAGACACTTTATGTCCT+CGG | 0.562351 | 7.3:+30445331 | None:intergenic |
| ATACTGGAAGCAACTCAACC+AGG | 0.563622 | 7.3:-30445094 | MS.gene42158:CDS |
| ACGCATTGGGAGGTGAAAAG+TGG | 0.566127 | 7.3:+30445895 | None:intergenic |
| TATGGCAAAACCTCCTTGGA+AGG | 0.570023 | 7.3:-30445002 | MS.gene42158:CDS |
| TGGAAAAGCCAGTCAATCAA+AGG | 0.572095 | 7.3:+30444642 | None:intergenic |
| AGAGCCGTGTTCAAACCAAT+GGG | 0.577523 | 7.3:+30444609 | None:intergenic |
| ATGAGCTCTCGCATTAAACC+CGG | 0.593075 | 7.3:+30444705 | None:intergenic |
| ATAGAATTGCTGTGTGGAGT+GGG | 0.595797 | 7.3:-30444803 | MS.gene42158:CDS |
| ATATATGATTGTGGGCCCCA+TGG | 0.599404 | 7.3:+30444950 | None:intergenic |
| GTGAGCAACCATACCTTCCA+AGG | 0.605193 | 7.3:+30444989 | None:intergenic |
| CGATGCTAGATGGGGTTATG+GGG | 0.609310 | 7.3:-30444763 | MS.gene42158:CDS |
| TATTTACAGGACTTGTACCG+AGG | 0.611279 | 7.3:-30445348 | MS.gene42158:intron |
| TTCAAAGTGTGCTTTCCATG+GGG | 0.611441 | 7.3:-30444965 | MS.gene42158:CDS |
| ATGCGAGAGCTCATGTTTGG+GGG | 0.614814 | 7.3:-30444696 | MS.gene42158:CDS |
| AAATCCCATTGGTTTGAACA+CGG | 0.620889 | 7.3:-30444613 | MS.gene42158:CDS |
| GGAAGGATGAAGCGGAAAAG+CGG | 0.623856 | 7.3:+30447130 | None:intergenic |
| TGAAGGCCAACTAATGAACT+GGG | 0.625991 | 7.3:-30445183 | MS.gene42158:CDS |
| TACTGGAAGCAACTCAACCA+GGG | 0.628120 | 7.3:-30445093 | MS.gene42158:CDS |
| AATAGAATTGCTGTGTGGAG+TGG | 0.632726 | 7.3:-30444804 | MS.gene42158:CDS |
| CTCAATCTGCATATTCACCA+AGG | 0.638337 | 7.3:+30445244 | None:intergenic |
| GCTGGTGTCAAGGAATGTAT+GGG | 0.645660 | 7.3:-30444855 | MS.gene42158:CDS |
| ATGTCTTGACCAGTCCGTGA+AGG | 0.650374 | 7.3:+30444921 | None:intergenic |
| GTTGGTGGCACAACTGGTGA+AGG | 0.654935 | 7.3:-30445200 | MS.gene42158:CDS |
| GATCAAATCGACCGTCAGGT+AGG | 0.655832 | 7.3:+30445282 | None:intergenic |
| TCTCATAACTACGCATTGGG+AGG | 0.661369 | 7.3:+30445885 | None:intergenic |
| GGAATGTATGGGAAATGACA+GGG | 0.665453 | 7.3:-30444844 | MS.gene42158:CDS |
| TTACCACTGACAAAACCACT+AGG | 0.673289 | 7.3:-30447103 | MS.gene42158:intron |
| AAAACTCCATACCTACCTGA+CGG | 0.675250 | 7.3:-30445293 | MS.gene42158:CDS |
| GTAACATTGGAAGGATGAAG+CGG | 0.682034 | 7.3:+30447122 | None:intergenic |
| AGCAACCATACCTTCCAAGG+AGG | 0.704764 | 7.3:+30444992 | None:intergenic |
| GAATGCCACGATGCTAGATG+GGG | 0.719711 | 7.3:-30444771 | MS.gene42158:CDS |
| CATAACCCCATCTAGCATCG+TGG | 0.731383 | 7.3:+30444766 | None:intergenic |
| CTGATAATAGAATTGCTGTG+TGG | 0.757477 | 7.3:-30444809 | MS.gene42158:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTAAGATTGTAA+GGG | - | chr7.3:30445217-30445236 | MS.gene42158:CDS | 10.0% |
| !!! | TTTTTTTAATTAAGATTGTA+AGG | - | chr7.3:30445216-30445235 | MS.gene42158:CDS | 10.0% |
| !! | ACATTAAACAAACAAAAAAT+TGG | + | chr7.3:30445630-30445649 | None:intergenic | 15.0% |
| !!! | TTTTTTCAATTAAGATAACA+GGG | - | chr7.3:30444914-30444933 | MS.gene42158:CDS | 15.0% |
| !!! | TTTTTTTCAATTAAGATAAC+AGG | - | chr7.3:30444913-30444932 | MS.gene42158:CDS | 15.0% |
| !! | AAGCTATATATTGTATTTAC+AGG | - | chr7.3:30446246-30446265 | MS.gene42158:intron | 20.0% |
| !! | TATGCTTTATATATATTGTG+TGG | - | chr7.3:30445852-30445871 | MS.gene42158:intron | 20.0% |
| !! | TGGAAAATATAGAATTTAGT+AGG | + | chr7.3:30445802-30445821 | None:intergenic | 20.0% |
| !!! | TAAGGAGTATATTTAAAAAG+TGG | - | chr7.3:30446137-30446156 | MS.gene42158:intron | 20.0% |
| !!! | TATTTTCTTTTTCTGCTATA+AGG | - | chr7.3:30445517-30445536 | MS.gene42158:intron | 20.0% |
| !!! | TTAATACTGATTTTGTGATA+CGG | + | chr7.3:30446224-30446243 | None:intergenic | 20.0% |
| !!! | TTTACACATTGAACATATTT+TGG | - | chr7.3:30446024-30446043 | MS.gene42158:intron | 20.0% |
| !!! | TTTTTCAATTAAGATAACAG+GGG | - | chr7.3:30444915-30444934 | MS.gene42158:CDS | 20.0% |
| ! | AAGACATGTTTATGTATGTT+TGG | + | chr7.3:30445416-30445435 | None:intergenic | 25.0% |
| ! | AATCTCAAACTGAATAATAG+AGG | + | chr7.3:30446059-30446078 | None:intergenic | 25.0% |
| ! | AATGAGACGATTAAAACAAA+TGG | + | chr7.3:30445822-30445841 | None:intergenic | 25.0% |
| ! | AGTAGGAAAACTAATGAATT+CGG | + | chr7.3:30445785-30445804 | None:intergenic | 25.0% |
| ! | ATTAAGGTTATTGGAAATAC+TGG | - | chr7.3:30446497-30446516 | MS.gene42158:intron | 25.0% |
| ! | CAAACAAAAAATTGGATTCA+TGG | + | chr7.3:30445622-30445641 | None:intergenic | 25.0% |
| ! | GTAGTTATGAGATGAAAAAT+AGG | - | chr7.3:30445733-30445752 | MS.gene42158:intron | 25.0% |
| ! | TAAGCTTGTACAACTAAAAA+AGG | + | chr7.3:30445365-30445384 | None:intergenic | 25.0% |
| ! | TTATGAGATGAAAAATAGGT+AGG | - | chr7.3:30445737-30445756 | MS.gene42158:intron | 25.0% |
| !! | ACAACTAAAAAAGGTTTGTT+TGG | + | chr7.3:30445356-30445375 | None:intergenic | 25.0% |
| !! | GCTGATAATGATAAGTAAAA+TGG | + | chr7.3:30444540-30444559 | None:intergenic | 25.0% |
| !!! | GAATTTCTTTTGTTGTTCAT+CGG | - | chr7.3:30444724-30444743 | MS.gene42158:CDS | 25.0% |
| !!! | TAATACTGATTTTGTGATAC+GGG | + | chr7.3:30446223-30446242 | None:intergenic | 25.0% |
| !!! | TGCGTTGATTTGTTAAAAAT+TGG | - | chr7.3:30444677-30444696 | MS.gene42158:CDS | 25.0% |
| !!! | TTTAATCGTCTCATTTTTTC+AGG | - | chr7.3:30445827-30445846 | MS.gene42158:intron | 25.0% |
| AAGAGCTTAGAATTCAATGT+AGG | + | chr7.3:30446944-30446963 | None:intergenic | 30.0% | |
| AAGGATAGAATTTGCCAATT+TGG | - | chr7.3:30447084-30447103 | MS.gene42158:intron | 30.0% | |
| AATGATGACACAACATATTG+GGG | + | chr7.3:30445487-30445506 | None:intergenic | 30.0% | |
| AATGGAAAATTTGAACCTAG+TGG | + | chr7.3:30444522-30444541 | None:intergenic | 30.0% | |
| AGGCACATTATATATGATTG+TGG | + | chr7.3:30446669-30446688 | None:intergenic | 30.0% | |
| ATACACTTGTGAGAAAATGA+TGG | - | chr7.3:30445000-30445019 | MS.gene42158:CDS | 30.0% | |
| ATAGAGGAGATTTAGACAAT+AGG | - | chr7.3:30445991-30446010 | MS.gene42158:intron | 30.0% | |
| ATGATAAGCTATGAGTTACT+TGG | - | chr7.3:30444955-30444974 | MS.gene42158:CDS | 30.0% | |
| ATGTCTTATACTGTGTAGAT+TGG | - | chr7.3:30445877-30445896 | MS.gene42158:CDS | 30.0% | |
| CAATGATGACACAACATATT+GGG | + | chr7.3:30445488-30445507 | None:intergenic | 30.0% | |
| CTTCATATAAACCCTTACTA+TGG | - | chr7.3:30446587-30446606 | MS.gene42158:intron | 30.0% | |
| GGCACATTATATATGATTGT+GGG | + | chr7.3:30446668-30446687 | None:intergenic | 30.0% | |
| GTAGTGCTTTGTAAAATTAG+CGG | - | chr7.3:30445135-30445154 | MS.gene42158:CDS | 30.0% | |
| TATTGTCTAAATCTCCTCTA+TGG | + | chr7.3:30445992-30446011 | None:intergenic | 30.0% | |
| TCAATGATGACACAACATAT+TGG | + | chr7.3:30445489-30445508 | None:intergenic | 30.0% | |
| TCATATATAATGTGCCTTCA+CGG | - | chr7.3:30446672-30446691 | MS.gene42158:intron | 30.0% | |
| TCGAATTTCGCAATTAGTAA+AGG | + | chr7.3:30444704-30444723 | None:intergenic | 30.0% | |
| TGAGAAAATGATGGTTACTA+AGG | - | chr7.3:30445009-30445028 | MS.gene42158:CDS | 30.0% | |
| ! | AATTCTATCCTTTTCTCCAA+AGG | + | chr7.3:30447076-30447095 | None:intergenic | 30.0% |
| ! | ATAAGCTAGCTTATAGAAGA+TGG | - | chr7.3:30445062-30445081 | MS.gene42158:CDS | 30.0% |
| ! | ATTCTATCCTTTTCTCCAAA+GGG | + | chr7.3:30447075-30447094 | None:intergenic | 30.0% |
| ! | CTGATTGAATTTTCAGTGTT+TGG | - | chr7.3:30444824-30444843 | MS.gene42158:CDS | 30.0% |
| !! | AGCTAGTTTATAGTTGATAG+CGG | - | chr7.3:30445091-30445110 | MS.gene42158:CDS | 30.0% |
| !!! | TTGTTTTGGTGGGAATATTA+AGG | - | chr7.3:30446481-30446500 | MS.gene42158:intron | 30.0% |
| AACGTTTGTCTGCATTATTC+AGG | - | chr7.3:30445652-30445671 | MS.gene42158:intron | 35.0% | |
| ACCAATTTCCTTCACCAAAT+TGG | + | chr7.3:30447101-30447120 | None:intergenic | 35.0% | |
| ATACTCCTTAAAACATGCAG+TGG | + | chr7.3:30446127-30446146 | None:intergenic | 35.0% | |
| ATTCCCACCAAAACAATTGA+CGG | + | chr7.3:30446477-30446496 | None:intergenic | 35.0% | |
| CTGATAATAGAATTGCTGTG+TGG | - | chr7.3:30446798-30446817 | MS.gene42158:intron | 35.0% | |
| CTTATACTGTGTAGATTGGA+GGG | - | chr7.3:30445881-30445900 | MS.gene42158:CDS | 35.0% | |
| GGTGGGAATATTAAGGTTAT+TGG | - | chr7.3:30446488-30446507 | MS.gene42158:intron | 35.0% | |
| GTGAATATGCAGATTGAGAA+TGG | - | chr7.3:30446368-30446387 | MS.gene42158:intron | 35.0% | |
| TCATCTCATAACTACGCATT+GGG | + | chr7.3:30445728-30445747 | None:intergenic | 35.0% | |
| TCTTATACTGTGTAGATTGG+AGG | - | chr7.3:30445880-30445899 | MS.gene42158:CDS | 35.0% | |
| TCTTGAATCATATGATGCCT+TGG | - | chr7.3:30446346-30446365 | MS.gene42158:intron | 35.0% | |
| TGTTGCAAGCAATTTGATTC+CGG | - | chr7.3:30446883-30446902 | MS.gene42158:intron | 35.0% | |
| TTCATCTCATAACTACGCAT+TGG | + | chr7.3:30445729-30445748 | None:intergenic | 35.0% | |
| TTTCAAAGTGTGCTTTCCAT+GGG | - | chr7.3:30446641-30446660 | MS.gene42158:intron | 35.0% | |
| ! | AGAATTTGCCAATTTGGTGA+AGG | - | chr7.3:30447090-30447109 | MS.gene42158:intron | 35.0% |
| !! | AAATCCCATTGGTTTGAACA+CGG | - | chr7.3:30446994-30447013 | MS.gene42158:intron | 35.0% |
| !! | AGGTAGGTATGGAGTTTTAA+TGG | + | chr7.3:30446312-30446331 | None:intergenic | 35.0% |
| !!! | AAGTTTTGAATCACATGTGG+AGG | + | chr7.3:30446713-30446732 | None:intergenic | 35.0% |
| !!! | GCTAAGTTTTGAATCACATG+TGG | + | chr7.3:30446716-30446735 | None:intergenic | 35.0% |
| !!! | TTCATCGGTTTTGTGGTAAA+TGG | - | chr7.3:30444739-30444758 | MS.gene42158:CDS | 35.0% |
| !!! | TTTGTTGTTCATCGGTTTTG+TGG | - | chr7.3:30444732-30444751 | MS.gene42158:CDS | 35.0% |
| AAAACTCCATACCTACCTGA+CGG | - | chr7.3:30446314-30446333 | MS.gene42158:intron | 40.0% | |
| AAAGTGGTCTCATGTGTTTC+TGG | - | chr7.3:30446153-30446172 | MS.gene42158:intron | 40.0% | |
| AACTGTAGAATGCATGCTCT+GGG | - | chr7.3:30445911-30445930 | MS.gene42158:CDS | 40.0% | |
| AATAGAATTGCTGTGTGGAG+TGG | - | chr7.3:30446803-30446822 | MS.gene42158:intron | 40.0% | |
| AGGAATGTATGGGAAATGAC+AGG | - | chr7.3:30446762-30446781 | MS.gene42158:intron | 40.0% | |
| ATAGAATTGCTGTGTGGAGT+GGG | - | chr7.3:30446804-30446823 | MS.gene42158:intron | 40.0% | |
| ATGGTGATCTACTAGAGTGA+AGG | - | chr7.3:30444758-30444777 | MS.gene42158:CDS | 40.0% | |
| CAGATTGAGAATGGAGTTGA+AGG | - | chr7.3:30446377-30446396 | MS.gene42158:intron | 40.0% | |
| CATTATTCAGGAACTCTTCC+TGG | - | chr7.3:30445664-30445683 | MS.gene42158:intron | 40.0% | |
| CTCAATCTGCATATTCACCA+AGG | + | chr7.3:30446366-30446385 | None:intergenic | 40.0% | |
| CTTTCAAAGTGTGCTTTCCA+TGG | - | chr7.3:30446640-30446659 | MS.gene42158:intron | 40.0% | |
| GATCTGTGATGAAACCATAG+AGG | - | chr7.3:30445975-30445994 | MS.gene42158:intron | 40.0% | |
| GCTACATTCAAGACCTATAC+TGG | - | chr7.3:30444437-30444456 | MS.gene42158:CDS | 40.0% | |
| GGAATGTATGGGAAATGACA+GGG | - | chr7.3:30446763-30446782 | MS.gene42158:intron | 40.0% | |
| GTAACATTGGAAGGATGAAG+CGG | + | chr7.3:30444488-30444507 | None:intergenic | 40.0% | |
| GTGTTCAAACCAATGGGATT+TGG | + | chr7.3:30446995-30447014 | None:intergenic | 40.0% | |
| GTTGCAAGCAATTTGATTCC+GGG | - | chr7.3:30446884-30446903 | MS.gene42158:intron | 40.0% | |
| TAATGCGAGAGCTCATGTTT+GGG | - | chr7.3:30446909-30446928 | MS.gene42158:intron | 40.0% | |
| TATTTACAGGACTTGTACCG+AGG | - | chr7.3:30446259-30446278 | MS.gene42158:intron | 40.0% | |
| TCGTACATGAAGACAGATAC+AGG | + | chr7.3:30445557-30445576 | None:intergenic | 40.0% | |
| TCTCAGACACTTTATGTCCT+CGG | + | chr7.3:30446279-30446298 | None:intergenic | 40.0% | |
| TGAAGGCCAACTAATGAACT+GGG | - | chr7.3:30446424-30446443 | MS.gene42158:intron | 40.0% | |
| TGGAAAAGCCAGTCAATCAA+AGG | + | chr7.3:30446968-30446987 | None:intergenic | 40.0% | |
| TGTATCTGTCTTCATGTACG+AGG | - | chr7.3:30445556-30445575 | MS.gene42158:intron | 40.0% | |
| TTAATGCGAGAGCTCATGTT+TGG | - | chr7.3:30446908-30446927 | MS.gene42158:intron | 40.0% | |
| TTACCACTGACAAAACCACT+AGG | - | chr7.3:30444504-30444523 | MS.gene42158:CDS | 40.0% | |
| TTACTATGGCAAAACCTCCT+TGG | - | chr7.3:30446601-30446620 | MS.gene42158:intron | 40.0% | |
| TTCAAAGTGTGCTTTCCATG+GGG | - | chr7.3:30446642-30446661 | MS.gene42158:intron | 40.0% | |
| TTGTCAGTGGTAACATTGGA+AGG | + | chr7.3:30444497-30444516 | None:intergenic | 40.0% | |
| ! | AAGGAGGTTTTGCCATAGTA+AGG | + | chr7.3:30446602-30446621 | None:intergenic | 40.0% |
| ! | AGGAGGTTTTGCCATAGTAA+GGG | + | chr7.3:30446601-30446620 | None:intergenic | 40.0% |
| ! | ATTGGTCGACAGCATTTTGT+TGG | - | chr7.3:30447115-30447134 | MS.gene42158:CDS | 40.0% |
| ! | CTGTACCACTGCATGTTTTA+AGG | - | chr7.3:30446119-30446138 | MS.gene42158:intron | 40.0% |
| ! | CTTAGCTCAAAGTACTTGCT+TGG | - | chr7.3:30446730-30446749 | MS.gene42158:intron | 40.0% |
| ! | GCCAATTTGGTGAAGGAAAT+TGG | - | chr7.3:30447097-30447116 | MS.gene42158:intron | 40.0% |
| !! | GGAGTTGAAGGTGTTATTGT+TGG | - | chr7.3:30446389-30446408 | MS.gene42158:intron | 40.0% |
| !! | GGTTTTGTCAGTGGTAACAT+TGG | + | chr7.3:30444501-30444520 | None:intergenic | 40.0% |
| !! | GTTGAAGGTGTTATTGTTGG+TGG | - | chr7.3:30446392-30446411 | MS.gene42158:intron | 40.0% |
| !! | TGATGACGACGACTTTTTCT+TGG | - | chr7.3:30447159-30447178 | MS.gene42158:CDS | 40.0% |
| !!! | ACACCGTCAATTGTTTTGGT+GGG | - | chr7.3:30446471-30446490 | MS.gene42158:intron | 40.0% |
| AACCAATGGGATTTGGCATG+TGG | + | chr7.3:30446988-30447007 | None:intergenic | 45.0% | |
| AAGAGCCGTGTTCAAACCAA+TGG | + | chr7.3:30447002-30447021 | None:intergenic | 45.0% | |
| AATGCGAGAGCTCATGTTTG+GGG | - | chr7.3:30446910-30446929 | MS.gene42158:intron | 45.0% | |
| ACAAATGGCAGCCTGAAAAC+TGG | + | chr7.3:30447046-30447065 | None:intergenic | 45.0% | |
| ACGATGCTAGATGGGGTTAT+GGG | - | chr7.3:30446843-30446862 | MS.gene42158:intron | 45.0% | |
| AGAGCCGTGTTCAAACCAAT+GGG | + | chr7.3:30447001-30447020 | None:intergenic | 45.0% | |
| AGCAATTCATGCAACTGAGC+AGG | - | chr7.3:30446538-30446557 | MS.gene42158:intron | 45.0% | |
| AGCTCTTGCCTTTGATTGAC+TGG | - | chr7.3:30446957-30446976 | MS.gene42158:intron | 45.0% | |
| AGTTGCATGAATTGCTTCCC+TGG | + | chr7.3:30446534-30446553 | None:intergenic | 45.0% | |
| ATACTGGAAGCAACTCAACC+AGG | - | chr7.3:30446513-30446532 | MS.gene42158:intron | 45.0% | |
| ATATATGATTGTGGGCCCCA+TGG | + | chr7.3:30446660-30446679 | None:intergenic | 45.0% | |
| ATGAATGCCACGATGCTAGA+TGG | - | chr7.3:30446834-30446853 | MS.gene42158:intron | 45.0% | |
| ATGAGCTCTCGCATTAAACC+CGG | + | chr7.3:30446905-30446924 | None:intergenic | 45.0% | |
| CAAAACCTCCTTGGAAGGTA+TGG | - | chr7.3:30446610-30446629 | MS.gene42158:intron | 45.0% | |
| CACAACATATTGGGGCTCTT+CGG | + | chr7.3:30445479-30445498 | None:intergenic | 45.0% | |
| GAACTGTAGAATGCATGCTC+TGG | - | chr7.3:30445910-30445929 | MS.gene42158:CDS | 45.0% | |
| GATTTCACAGCTGCTTGTGT+AGG | + | chr7.3:30445693-30445712 | None:intergenic | 45.0% | |
| GCAATTCATGCAACTGAGCA+GGG | - | chr7.3:30446539-30446558 | MS.gene42158:intron | 45.0% | |
| GCTCTTCCCAGTTCATTAGT+TGG | + | chr7.3:30446433-30446452 | None:intergenic | 45.0% | |
| GTGAAGGCCAACTAATGAAC+TGG | - | chr7.3:30446423-30446442 | MS.gene42158:intron | 45.0% | |
| TACTGGAAGCAACTCAACCA+GGG | - | chr7.3:30446514-30446533 | MS.gene42158:intron | 45.0% | |
| TATAATGTGCCTTCACGGAC+TGG | - | chr7.3:30446677-30446696 | MS.gene42158:intron | 45.0% | |
| TATACTGGCGTATGCTTCAC+AGG | - | chr7.3:30444452-30444471 | MS.gene42158:CDS | 45.0% | |
| TATGGCAAAACCTCCTTGGA+AGG | - | chr7.3:30446605-30446624 | MS.gene42158:intron | 45.0% | |
| TCAAGATCAAATCGACCGTC+AGG | + | chr7.3:30446332-30446351 | None:intergenic | 45.0% | |
| TCTACTAGAGTGAAGGACTC+TGG | - | chr7.3:30444765-30444784 | MS.gene42158:CDS | 45.0% | |
| TCTCATAACTACGCATTGGG+AGG | + | chr7.3:30445725-30445744 | None:intergenic | 45.0% | |
| TGAATGCCACGATGCTAGAT+GGG | - | chr7.3:30446835-30446854 | MS.gene42158:intron | 45.0% | |
| TGTGAAGCATACGCCAGTAT+AGG | + | chr7.3:30444453-30444472 | None:intergenic | 45.0% | |
| TTCCACATGCCAAATCCCAT+TGG | - | chr7.3:30446983-30447002 | MS.gene42158:intron | 45.0% | |
| TTGCTCAACTTGGAGTTGTC+AGG | - | chr7.3:30447020-30447039 | MS.gene42158:intron | 45.0% | |
| ! | ATCCTTTTCTCCAAAGGGAG+AGG | + | chr7.3:30447070-30447089 | None:intergenic | 45.0% |
| ! | GCTGGTGTCAAGGAATGTAT+GGG | - | chr7.3:30446752-30446771 | MS.gene42158:intron | 45.0% |
| ! | TACCTCTCCCTTTGGAGAAA+AGG | - | chr7.3:30447065-30447084 | MS.gene42158:intron | 45.0% |
| ! | TCCAAAGGGAGAGGTACAAA+TGG | + | chr7.3:30447061-30447080 | None:intergenic | 45.0% |
| !! | CTCATGTGTTTCTGGCATCA+TGG | - | chr7.3:30446161-30446180 | MS.gene42158:intron | 45.0% |
| !! | GTTATTGTTGGTGGCACAAC+TGG | - | chr7.3:30446401-30446420 | MS.gene42158:intron | 45.0% |
| !!! | CACACCGTCAATTGTTTTGG+TGG | - | chr7.3:30446470-30446489 | MS.gene42158:intron | 45.0% |
| !!! | GAACCTAGTGGTTTTGTCAG+TGG | + | chr7.3:30444510-30444529 | None:intergenic | 45.0% |
| AACACGGCTCTTGCTCAACT+TGG | - | chr7.3:30447010-30447029 | MS.gene42158:intron | 50.0% | |
| AATCGACCGTCAGGTAGGTA+TGG | + | chr7.3:30446323-30446342 | None:intergenic | 50.0% | |
| ACGCATTGGGAGGTGAAAAG+TGG | + | chr7.3:30445715-30445734 | None:intergenic | 50.0% | |
| AGCAACCATACCTTCCAAGG+AGG | + | chr7.3:30446618-30446637 | None:intergenic | 50.0% | |
| AGTCGTCGTCATCAAGAACC+TGG | + | chr7.3:30447153-30447172 | None:intergenic | 50.0% | |
| ATGCGAGAGCTCATGTTTGG+GGG | - | chr7.3:30446911-30446930 | MS.gene42158:intron | 50.0% | |
| ATGTCTTGACCAGTCCGTGA+AGG | + | chr7.3:30446689-30446708 | None:intergenic | 50.0% | |
| CACGATGCTAGATGGGGTTA+TGG | - | chr7.3:30446842-30446861 | MS.gene42158:intron | 50.0% | |
| CATAACCCCATCTAGCATCG+TGG | + | chr7.3:30446844-30446863 | None:intergenic | 50.0% | |
| CGATGCTAGATGGGGTTATG+GGG | - | chr7.3:30446844-30446863 | MS.gene42158:intron | 50.0% | |
| GAATGCCACGATGCTAGATG+GGG | - | chr7.3:30446836-30446855 | MS.gene42158:intron | 50.0% | |
| GATCAAATCGACCGTCAGGT+AGG | + | chr7.3:30446328-30446347 | None:intergenic | 50.0% | |
| GCCATTTGTACCTCTCCCTT+TGG | - | chr7.3:30447057-30447076 | MS.gene42158:intron | 50.0% | |
| GGAAGGATGAAGCGGAAAAG+CGG | + | chr7.3:30444480-30444499 | None:intergenic | 50.0% | |
| GTGAGCAACCATACCTTCCA+AGG | + | chr7.3:30446621-30446640 | None:intergenic | 50.0% | |
| TGTTGGAACTGAAGACGTCC+AGG | - | chr7.3:30447132-30447151 | MS.gene42158:CDS | 50.0% | |
| ! | CATGCTCTGGGTAGGATTTC+TGG | - | chr7.3:30445923-30445942 | MS.gene42158:CDS | 50.0% |
| ! | GAGTTGTCAGGCCAGTTTTC+AGG | - | chr7.3:30447032-30447051 | MS.gene42158:intron | 50.0% |
| ! | GCGCACACCGTCAATTGTTT+TGG | - | chr7.3:30446467-30446486 | MS.gene42158:intron | 50.0% |
| ! | GCTCAAAGTACTTGCTTGGC+TGG | - | chr7.3:30446734-30446753 | MS.gene42158:intron | 50.0% |
| ! | GGCTGGTGTCAAGGAATGTA+TGG | - | chr7.3:30446751-30446770 | MS.gene42158:intron | 50.0% |
| ! | GGTTTTGCGGTTGGAATGCA+TGG | - | chr7.3:30446560-30446579 | MS.gene42158:intron | 50.0% |
| ! | GTAGAATGCATGCTCTGGGT+AGG | - | chr7.3:30445915-30445934 | MS.gene42158:CDS | 50.0% |
| ! | TACTTGCTTGGCTGGTGTCA+AGG | - | chr7.3:30446742-30446761 | MS.gene42158:intron | 50.0% |
| ! | TGCAACTGAGCAGGGTTTTG+CGG | - | chr7.3:30446547-30446566 | MS.gene42158:intron | 50.0% |
| AGATGGGGTTATGGGGCTAC+TGG | - | chr7.3:30446851-30446870 | MS.gene42158:intron | 55.0% | |
| AGCTGCTTGTGTAGGCTTCC+AGG | + | chr7.3:30445685-30445704 | None:intergenic | 55.0% | |
| ! | ACTGAGCAGGGTTTTGCGGT+TGG | - | chr7.3:30446551-30446570 | MS.gene42158:intron | 55.0% |
| !! | GTTGGTGGCACAACTGGTGA+AGG | - | chr7.3:30446407-30446426 | MS.gene42158:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 30444434 | 30447195 | 30444434 | ID=MS.gene42158 |
| chr7.3 | mRNA | 30444434 | 30447195 | 30444434 | ID=MS.gene42158.t1;Parent=MS.gene42158 |
| chr7.3 | exon | 30447104 | 30447195 | 30447104 | ID=MS.gene42158.t1.exon1;Parent=MS.gene42158.t1 |
| chr7.3 | CDS | 30447104 | 30447195 | 30447104 | ID=cds.MS.gene42158.t1;Parent=MS.gene42158.t1 |
| chr7.3 | exon | 30445875 | 30445955 | 30445875 | ID=MS.gene42158.t1.exon2;Parent=MS.gene42158.t1 |
| chr7.3 | CDS | 30445875 | 30445955 | 30445875 | ID=cds.MS.gene42158.t1;Parent=MS.gene42158.t1 |
| chr7.3 | exon | 30444434 | 30445361 | 30444434 | ID=MS.gene42158.t1.exon3;Parent=MS.gene42158.t1 |
| chr7.3 | CDS | 30444434 | 30445361 | 30444434 | ID=cds.MS.gene42158.t1;Parent=MS.gene42158.t1 |
| Gene Sequence |
| Protein sequence |
