Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96090.t1 | XP_003623729.1 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 2.00E-212 | 748 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96090.t1 | Q42800 | 87.5 | 327 | 41 | 0 | 40 | 366 | 6 | 332 | 2.3e-172 | 606.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96090.t1 | G7L0A3 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 1.4e-212 | 748.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051744 | MS.gene96090 | 0.817736 | 2.82E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42158 | MS.gene96090 | PPI |
| MS.gene96090 | MS.gene27569 | PPI |
| MS.gene005617 | MS.gene96090 | PPI |
| MS.gene016221 | MS.gene96090 | PPI |
| MS.gene03038 | MS.gene96090 | PPI |
| MS.gene20715 | MS.gene96090 | PPI |
| MS.gene07198 | MS.gene96090 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96090.t1 | MTR_7g075090 | 98.361 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 0.0 | 755 |
| MS.gene96090.t1 | MTR_1g088775 | 93.169 | 366 | 25 | 0 | 1 | 366 | 1 | 366 | 0.0 | 725 |
| MS.gene96090.t1 | MTR_8g036040 | 66.667 | 345 | 115 | 0 | 22 | 366 | 14 | 358 | 2.13e-176 | 494 |
| MS.gene96090.t1 | MTR_8g036035 | 63.488 | 367 | 128 | 3 | 1 | 366 | 1 | 362 | 9.14e-166 | 468 |
| MS.gene96090.t1 | MTR_8g036020 | 68.910 | 312 | 96 | 1 | 55 | 366 | 18 | 328 | 4.68e-161 | 454 |
| MS.gene96090.t1 | MTR_8g036050 | 63.782 | 312 | 108 | 1 | 55 | 366 | 1 | 307 | 1.31e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96090.t1 | AT2G45440 | 74.590 | 366 | 92 | 1 | 1 | 366 | 1 | 365 | 0.0 | 576 |
| MS.gene96090.t1 | AT3G60880 | 73.770 | 366 | 95 | 1 | 1 | 366 | 1 | 365 | 0.0 | 563 |
| MS.gene96090.t1 | AT3G60880 | 73.770 | 366 | 94 | 2 | 1 | 366 | 1 | 364 | 0.0 | 560 |
Find 101 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGAATATTAAGGTTAT+TGG | 0.186837 | 7.4:-30068435 | MS.gene96090:CDS |
| AAGGATAGAATTTGCCAATT+TGG | 0.190236 | 7.4:-30067839 | MS.gene96090:CDS |
| ACCAATTTCCTTCACCAAAT+TGG | 0.224725 | 7.4:+30067825 | None:intergenic |
| GCCAATTTGGTGAAGGAAAT+TGG | 0.226319 | 7.4:-30067826 | MS.gene96090:CDS |
| ATTAAGGTTATTGGAAATAC+TGG | 0.273517 | 7.4:-30068426 | MS.gene96090:CDS |
| GCGCACACCGTCAACTGTTT+TGG | 0.304655 | 7.4:-30068456 | MS.gene96090:CDS |
| TGTTGCAAGCAATTTGATTC+CGG | 0.308700 | 7.4:-30068040 | MS.gene96090:CDS |
| CATTATTCAGGAACTCTTCC+TGG | 0.320905 | 7.4:-30069259 | MS.gene96090:intron |
| AGCTGCTTGTGTAGGCTTCC+AGG | 0.338802 | 7.4:+30069241 | None:intergenic |
| CTTTCAAAGTGTGCTTTCCA+TGG | 0.342943 | 7.4:-30068283 | MS.gene96090:CDS |
| CACGATGCTAGATGGGGTTA+TGG | 0.357163 | 7.4:-30068081 | MS.gene96090:CDS |
| GTGAAGGCCAACTAATGAAC+TGG | 0.368307 | 7.4:-30068500 | MS.gene96090:CDS |
| GTTGCAAGCAATTTGATTCC+GGG | 0.368402 | 7.4:-30068039 | MS.gene96090:CDS |
| TTAATGCGAGAGCTCATGTT+TGG | 0.368556 | 7.4:-30068015 | MS.gene96090:CDS |
| GTGTTCAAACCAATGGGATT+TGG | 0.372649 | 7.4:+30067931 | None:intergenic |
| AGCTCTTGCCTTTGATTGAC+TGG | 0.378010 | 7.4:-30067966 | MS.gene96090:CDS |
| TAATGCGAGAGCTCATGTTT+GGG | 0.389995 | 7.4:-30068014 | MS.gene96090:CDS |
| ACGATGCTAGATGGGGTTAT+GGG | 0.392947 | 7.4:-30068080 | MS.gene96090:CDS |
| ATGAATGCCACGATGCTAGA+TGG | 0.396310 | 7.4:-30068089 | MS.gene96090:CDS |
| TTGCTCAACTTGGAGTTGTC+AGG | 0.401383 | 7.4:-30067903 | MS.gene96090:CDS |
| TACCTCTCCCATTGGAGAAA+AGG | 0.404203 | 7.4:-30067858 | MS.gene96090:CDS |
| AACACGGCTCTTGCTCAACT+TGG | 0.407658 | 7.4:-30067913 | MS.gene96090:CDS |
| GCTCTTCCCAGTTCATTAGT+TGG | 0.415200 | 7.4:+30068493 | None:intergenic |
| GGCTGGTGTCAAGGAATGTA+TGG | 0.417544 | 7.4:-30068172 | MS.gene96090:CDS |
| GCTACATTCAAGACCTATAC+TGG | 0.420080 | 7.4:-30070498 | MS.gene96090:CDS |
| TCATCTCATAACTACGCATT+GGG | 0.424346 | 7.4:+30069198 | None:intergenic |
| AGTTGCATGAATTGCTTCCC+TGG | 0.424932 | 7.4:+30068392 | None:intergenic |
| CTTCATATAAACCCTTACTA+TGG | 0.428403 | 7.4:-30068336 | MS.gene96090:CDS |
| AGATGGGGTTATGGGGCTAC+TGG | 0.429920 | 7.4:-30068072 | MS.gene96090:CDS |
| ACAAATGGCAGCCTGAAAAC+TGG | 0.430651 | 7.4:+30067880 | None:intergenic |
| TTTCAAAGTGTGCTTTCCAT+GGG | 0.432753 | 7.4:-30068282 | MS.gene96090:CDS |
| GGAGTTGAAGGTGTTATTGT+TGG | 0.435948 | 7.4:-30068534 | MS.gene96090:CDS |
| GTTATTGTTGGTGGCACAAC+TGG | 0.447799 | 7.4:-30068522 | MS.gene96090:CDS |
| GCTCAAAGTACTTGCTTGGC+TGG | 0.459949 | 7.4:-30068189 | MS.gene96090:CDS |
| TCATATATAATGTGCCTTCA+CGG | 0.466811 | 7.4:-30068251 | MS.gene96090:CDS |
| AGCAATTCATGCAACTGAGC+AGG | 0.472668 | 7.4:-30068385 | MS.gene96090:CDS |
| CTTAGCTCAAAGTACTTGCT+TGG | 0.473911 | 7.4:-30068193 | MS.gene96090:CDS |
| TTCATCTCATAACTACGCAT+TGG | 0.474360 | 7.4:+30069197 | None:intergenic |
| TATACTGGCGTATGCTTCAC+AGG | 0.477913 | 7.4:-30070483 | MS.gene96090:CDS |
| CAAAACCTCCTTGGAAGGTA+TGG | 0.482290 | 7.4:-30068313 | MS.gene96090:CDS |
| GTTGAAGGTGTTATTGTTGG+TGG | 0.483414 | 7.4:-30068531 | MS.gene96090:CDS |
| GCCATTTGTACCTCTCCCAT+TGG | 0.483717 | 7.4:-30067866 | MS.gene96090:CDS |
| TCAAGATCAAATCGACCGTC+AGG | 0.487193 | 7.4:+30068594 | None:intergenic |
| TTACTATGGCAAAACCTCCT+TGG | 0.496884 | 7.4:-30068322 | MS.gene96090:CDS |
| TATAATGTGCCTTCACGGAC+TGG | 0.501920 | 7.4:-30068246 | MS.gene96090:CDS |
| TTGTCAGTGGTAACATTGGA+AGG | 0.502303 | 7.4:+30070441 | None:intergenic |
| GTGAATATGCAGATTGAGAA+TGG | 0.503509 | 7.4:-30068555 | MS.gene96090:CDS |
| GATTTCACAGCTGCTTGTGT+AGG | 0.510543 | 7.4:+30069233 | None:intergenic |
| AACCAATGGGATTTGGCATG+TGG | 0.510972 | 7.4:+30067938 | None:intergenic |
| TACTTGCTTGGCTGGTGTCA+AGG | 0.511271 | 7.4:-30068181 | MS.gene96090:CDS |
| AGGAATGTATGGGAAATGAC+AGG | 0.516838 | 7.4:-30068161 | MS.gene96090:CDS |
| TCCAATGGGAGAGGTACAAA+TGG | 0.521681 | 7.4:+30067865 | None:intergenic |
| AAGAGCTTAGAATTCAATGT+AGG | 0.522936 | 7.4:+30067982 | None:intergenic |
| TGTTGGAACTGAAGACGTCC+AGG | 0.522988 | 7.4:-30067791 | MS.gene96090:CDS |
| AAGAGCCGTGTTCAAACCAA+TGG | 0.526094 | 7.4:+30067924 | None:intergenic |
| ATTCCCACCAAAACAGTTGA+CGG | 0.533028 | 7.4:+30068449 | None:intergenic |
| AGAATTTGCCAATTTGGTGA+AGG | 0.533742 | 7.4:-30067833 | MS.gene96090:CDS |
| AATCGACCGTCAGGTAGGTA+TGG | 0.533788 | 7.4:+30068603 | None:intergenic |
| GGCACATTATATATGATTGT+GGG | 0.534618 | 7.4:+30068258 | None:intergenic |
| TGTGAAGCATACGCCAGTAT+AGG | 0.536807 | 7.4:+30070485 | None:intergenic |
| AGGCACATTATATATGATTG+TGG | 0.538234 | 7.4:+30068257 | None:intergenic |
| AATGCGAGAGCTCATGTTTG+GGG | 0.539435 | 7.4:-30068013 | MS.gene96090:CDS |
| CAGATTGAGAATGGAGTTGA+AGG | 0.544549 | 7.4:-30068546 | MS.gene96090:CDS |
| TTCCACATGCCAAATCCCAT+TGG | 0.545798 | 7.4:-30067940 | MS.gene96090:CDS |
| TCTTGAATCATATGATGCCT+TGG | 0.551015 | 7.4:-30068577 | MS.gene96090:CDS |
| TGAATGCCACGATGCTAGAT+GGG | 0.551513 | 7.4:-30068088 | MS.gene96090:CDS |
| GCAATTCATGCAACTGAGCA+GGG | 0.554140 | 7.4:-30068384 | MS.gene96090:CDS |
| AGTCGTCGTCATCAAGAACC+TGG | 0.556999 | 7.4:+30067773 | None:intergenic |
| TCTCAGACACTTTATGTCCT+CGG | 0.562351 | 7.4:+30068647 | None:intergenic |
| ATACTGGAAGCAACTCAACC+AGG | 0.563622 | 7.4:-30068410 | MS.gene96090:CDS |
| ACGCATTGGGAGGTGAAAAG+TGG | 0.566127 | 7.4:+30069211 | None:intergenic |
| TATGGCAAAACCTCCTTGGA+AGG | 0.570023 | 7.4:-30068318 | MS.gene96090:CDS |
| TGGAAAAGCCAGTCAATCAA+AGG | 0.572095 | 7.4:+30067958 | None:intergenic |
| AGAGCCGTGTTCAAACCAAT+GGG | 0.577523 | 7.4:+30067925 | None:intergenic |
| ATGAGCTCTCGCATTAAACC+CGG | 0.593075 | 7.4:+30068021 | None:intergenic |
| ATAGAATTGCTGTGTGGAGT+GGG | 0.595797 | 7.4:-30068119 | MS.gene96090:CDS |
| ATATATGATTGTGGGCCCCA+TGG | 0.599404 | 7.4:+30068266 | None:intergenic |
| GTGAGCAACCATACCTTCCA+AGG | 0.605193 | 7.4:+30068305 | None:intergenic |
| CGATGCTAGATGGGGTTATG+GGG | 0.609310 | 7.4:-30068079 | MS.gene96090:CDS |
| TATTTACAGGACTTGTACCG+AGG | 0.611279 | 7.4:-30068664 | MS.gene96090:intron |
| TTCAAAGTGTGCTTTCCATG+GGG | 0.611441 | 7.4:-30068281 | MS.gene96090:CDS |
| ATGCGAGAGCTCATGTTTGG+GGG | 0.614814 | 7.4:-30068012 | MS.gene96090:CDS |
| AAATCCCATTGGTTTGAACA+CGG | 0.620889 | 7.4:-30067929 | MS.gene96090:CDS |
| GGAAGGATGAAGCGGAAAAG+CGG | 0.623856 | 7.4:+30070458 | None:intergenic |
| TGAAGGCCAACTAATGAACT+GGG | 0.625991 | 7.4:-30068499 | MS.gene96090:CDS |
| TACTGGAAGCAACTCAACCA+GGG | 0.628120 | 7.4:-30068409 | MS.gene96090:CDS |
| AATAGAATTGCTGTGTGGAG+TGG | 0.632726 | 7.4:-30068120 | MS.gene96090:CDS |
| CTCAATCTGCATATTCACCA+AGG | 0.638337 | 7.4:+30068560 | None:intergenic |
| GCTGGTGTCAAGGAATGTAT+GGG | 0.645660 | 7.4:-30068171 | MS.gene96090:CDS |
| ATGTCTTGACCAGTCCGTGA+AGG | 0.650374 | 7.4:+30068237 | None:intergenic |
| GTTGGTGGCACAACTGGTGA+AGG | 0.654935 | 7.4:-30068516 | MS.gene96090:CDS |
| GATCAAATCGACCGTCAGGT+AGG | 0.655832 | 7.4:+30068598 | None:intergenic |
| TCTCATAACTACGCATTGGG+AGG | 0.661369 | 7.4:+30069201 | None:intergenic |
| GGAATGTATGGGAAATGACA+GGG | 0.665453 | 7.4:-30068160 | MS.gene96090:CDS |
| TTACCACTGACAAAACCACT+AGG | 0.673289 | 7.4:-30070431 | MS.gene96090:intron |
| AAAACTCCATACCTACCTGA+CGG | 0.675250 | 7.4:-30068609 | MS.gene96090:CDS |
| GTAACATTGGAAGGATGAAG+CGG | 0.682034 | 7.4:+30070450 | None:intergenic |
| AGCAACCATACCTTCCAAGG+AGG | 0.704764 | 7.4:+30068308 | None:intergenic |
| GAATGCCACGATGCTAGATG+GGG | 0.719711 | 7.4:-30068087 | MS.gene96090:CDS |
| CATAACCCCATCTAGCATCG+TGG | 0.731383 | 7.4:+30068082 | None:intergenic |
| CTGATAATAGAATTGCTGTG+TGG | 0.757477 | 7.4:-30068125 | MS.gene96090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTAAGATTGTAA+GGG | - | chr7.4:30068545-30068564 | MS.gene96090:CDS | 10.0% |
| !!! | TTTTTTCAATTAAGATAATA+GGG | - | chr7.4:30068242-30068261 | MS.gene96090:CDS | 10.0% |
| !!! | TTTTTTTAATTAAGATTGTA+AGG | - | chr7.4:30068544-30068563 | MS.gene96090:CDS | 10.0% |
| !!! | TTTTTTTCAATTAAGATAAT+AGG | - | chr7.4:30068241-30068260 | MS.gene96090:CDS | 10.0% |
| !! | ACATTAAACAAACAAAAAAT+TGG | + | chr7.4:30068958-30068977 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTAAGATAATAG+GGG | - | chr7.4:30068243-30068262 | MS.gene96090:CDS | 15.0% |
| !! | AAGCTATATATTGTATTTAC+AGG | - | chr7.4:30069574-30069593 | MS.gene96090:intron | 20.0% |
| !! | TATGCTTTATATATATTGTG+TGG | - | chr7.4:30069180-30069199 | MS.gene96090:intron | 20.0% |
| !! | TGGAAAATATAGAATTTAGT+AGG | + | chr7.4:30069130-30069149 | None:intergenic | 20.0% |
| !!! | TAAGGAGTATATTTAAAAAG+TGG | - | chr7.4:30069465-30069484 | MS.gene96090:intron | 20.0% |
| !!! | TATTTTCTTTTTCTGCTATA+AGG | - | chr7.4:30068845-30068864 | MS.gene96090:intron | 20.0% |
| !!! | TTAATACTGATTTTGTGATA+CGG | + | chr7.4:30069552-30069571 | None:intergenic | 20.0% |
| !!! | TTTACACATTGAACATATTT+TGG | - | chr7.4:30069352-30069371 | MS.gene96090:intron | 20.0% |
| ! | AAGACATGTTTATGTATGTT+TGG | + | chr7.4:30068744-30068763 | None:intergenic | 25.0% |
| ! | AATCTCAAACTGAATAATAG+AGG | + | chr7.4:30069387-30069406 | None:intergenic | 25.0% |
| ! | AATGAGACGATTAAAACAAA+TGG | + | chr7.4:30069150-30069169 | None:intergenic | 25.0% |
| ! | AGTAGGAAAACTAATGAATT+TGG | + | chr7.4:30069113-30069132 | None:intergenic | 25.0% |
| ! | ATTAAGGTTATTGGAAATAC+TGG | - | chr7.4:30069825-30069844 | MS.gene96090:intron | 25.0% |
| ! | CAAACAAAAAATTGGATTCA+TGG | + | chr7.4:30068950-30068969 | None:intergenic | 25.0% |
| ! | GTAGTTATGAGATGAAAAAT+AGG | - | chr7.4:30069061-30069080 | MS.gene96090:intron | 25.0% |
| ! | TAAGCTTGTACAACTAAAAA+AGG | + | chr7.4:30068693-30068712 | None:intergenic | 25.0% |
| ! | TTATGAGATGAAAAATAGGT+AGG | - | chr7.4:30069065-30069084 | MS.gene96090:intron | 25.0% |
| !! | ACAACTAAAAAAGGTTTGTT+TGG | + | chr7.4:30068684-30068703 | None:intergenic | 25.0% |
| !! | GCTGATAATGATAAGTAAAA+TGG | + | chr7.4:30067856-30067875 | None:intergenic | 25.0% |
| !!! | GAATTTCTTTTGTTGTTCAT+CGG | - | chr7.4:30068051-30068070 | MS.gene96090:CDS | 25.0% |
| !!! | TAATACTGATTTTGTGATAC+GGG | + | chr7.4:30069551-30069570 | None:intergenic | 25.0% |
| !!! | TGCGTTGATTTGTTAAAAAT+TGG | - | chr7.4:30068004-30068023 | MS.gene96090:CDS | 25.0% |
| !!! | TTTAATCGTCTCATTTTTTC+AGG | - | chr7.4:30069155-30069174 | MS.gene96090:intron | 25.0% |
| AAGAGCTTAGAATTCAATGT+AGG | + | chr7.4:30070272-30070291 | None:intergenic | 30.0% | |
| AAGGATAGAATTTGCCAATT+TGG | - | chr7.4:30070412-30070431 | MS.gene96090:intron | 30.0% | |
| AATGATGACACAACATATTG+GGG | + | chr7.4:30068815-30068834 | None:intergenic | 30.0% | |
| AATGGAAAATTTGAACCTAG+TGG | + | chr7.4:30067838-30067857 | None:intergenic | 30.0% | |
| AGGCACATTATATATGATTG+TGG | + | chr7.4:30069997-30070016 | None:intergenic | 30.0% | |
| ATACACTTGTGAGAAAATGA+TGG | - | chr7.4:30068328-30068347 | MS.gene96090:CDS | 30.0% | |
| ATAGAGGAGATTTAGACAAT+AGG | - | chr7.4:30069319-30069338 | MS.gene96090:intron | 30.0% | |
| ATGATAAGCTATGAGTTACT+TGG | - | chr7.4:30068283-30068302 | MS.gene96090:CDS | 30.0% | |
| ATGTCTTATACTGTGTAGAT+TGG | - | chr7.4:30069205-30069224 | MS.gene96090:CDS | 30.0% | |
| CAATGATGACACAACATATT+GGG | + | chr7.4:30068816-30068835 | None:intergenic | 30.0% | |
| CTTCATATAAACCCTTACTA+TGG | - | chr7.4:30069915-30069934 | MS.gene96090:intron | 30.0% | |
| GGCACATTATATATGATTGT+GGG | + | chr7.4:30069996-30070015 | None:intergenic | 30.0% | |
| GTAGTGCTTTGTAAAATTAG+TGG | - | chr7.4:30068463-30068482 | MS.gene96090:CDS | 30.0% | |
| TATTGTCTAAATCTCCTCTA+TGG | + | chr7.4:30069320-30069339 | None:intergenic | 30.0% | |
| TCAATGATGACACAACATAT+TGG | + | chr7.4:30068817-30068836 | None:intergenic | 30.0% | |
| TCATATATAATGTGCCTTCA+CGG | - | chr7.4:30070000-30070019 | MS.gene96090:intron | 30.0% | |
| TCGAATTTCGCAATTAGTAA+AGG | + | chr7.4:30068031-30068050 | None:intergenic | 30.0% | |
| TCTTTATGAACATTGTCGAT+GGG | - | chr7.4:30067961-30067980 | MS.gene96090:CDS | 30.0% | |
| TGAGAAAATGATGGTTACTA+AGG | - | chr7.4:30068337-30068356 | MS.gene96090:CDS | 30.0% | |
| TTCTTTATGAACATTGTCGA+TGG | - | chr7.4:30067960-30067979 | MS.gene96090:CDS | 30.0% | |
| ! | AATTCTATCCTTTTCTCCAA+TGG | + | chr7.4:30070404-30070423 | None:intergenic | 30.0% |
| ! | ATAAGCTAGCTTATAGAAGA+TGG | - | chr7.4:30068390-30068409 | MS.gene96090:CDS | 30.0% |
| ! | ATTCTATCCTTTTCTCCAAT+GGG | + | chr7.4:30070403-30070422 | None:intergenic | 30.0% |
| ! | CTGATTGAATTTTCAGTGTT+TGG | - | chr7.4:30068152-30068171 | MS.gene96090:CDS | 30.0% |
| !! | AGCTAGTTTATAGTTGATAG+CGG | - | chr7.4:30068419-30068438 | MS.gene96090:CDS | 30.0% |
| AACGTTTGTCTGCATTATTC+AGG | - | chr7.4:30068980-30068999 | MS.gene96090:intron | 35.0% | |
| ACCAATTTCCTTCACCAAAT+TGG | + | chr7.4:30070429-30070448 | None:intergenic | 35.0% | |
| ATACTCCTTAAAACATGCAG+TGG | + | chr7.4:30069455-30069474 | None:intergenic | 35.0% | |
| CTGATAATAGAATTGCTGTG+TGG | - | chr7.4:30070126-30070145 | MS.gene96090:intron | 35.0% | |
| CTTATACTGTGTAGATTGGA+GGG | - | chr7.4:30069209-30069228 | MS.gene96090:CDS | 35.0% | |
| CTTTATGAACATTGTCGATG+GGG | - | chr7.4:30067962-30067981 | MS.gene96090:CDS | 35.0% | |
| GGTGGGAATATTAAGGTTAT+TGG | - | chr7.4:30069816-30069835 | MS.gene96090:intron | 35.0% | |
| GTGAATATGCAGATTGAGAA+TGG | - | chr7.4:30069696-30069715 | MS.gene96090:intron | 35.0% | |
| TCATCTCATAACTACGCATT+GGG | + | chr7.4:30069056-30069075 | None:intergenic | 35.0% | |
| TCTTATACTGTGTAGATTGG+AGG | - | chr7.4:30069208-30069227 | MS.gene96090:CDS | 35.0% | |
| TCTTGAATCATATGATGCCT+TGG | - | chr7.4:30069674-30069693 | MS.gene96090:intron | 35.0% | |
| TGTTGCAAGCAATTTGATTC+CGG | - | chr7.4:30070211-30070230 | MS.gene96090:intron | 35.0% | |
| TTCATCTCATAACTACGCAT+TGG | + | chr7.4:30069057-30069076 | None:intergenic | 35.0% | |
| TTTCAAAGTGTGCTTTCCAT+GGG | - | chr7.4:30069969-30069988 | MS.gene96090:intron | 35.0% | |
| ! | AGAATTTGCCAATTTGGTGA+AGG | - | chr7.4:30070418-30070437 | MS.gene96090:intron | 35.0% |
| !! | AAATCCCATTGGTTTGAACA+CGG | - | chr7.4:30070322-30070341 | MS.gene96090:intron | 35.0% |
| !! | AGGTAGGTATGGAGTTTTAA+TGG | + | chr7.4:30069640-30069659 | None:intergenic | 35.0% |
| !!! | AAGTTTTGAATCACATGTGG+AGG | + | chr7.4:30070041-30070060 | None:intergenic | 35.0% |
| !!! | CTGTTTTGGTGGGAATATTA+AGG | - | chr7.4:30069809-30069828 | MS.gene96090:intron | 35.0% |
| !!! | GCTAAGTTTTGAATCACATG+TGG | + | chr7.4:30070044-30070063 | None:intergenic | 35.0% |
| !!! | TTCATCGGTTTTGTGGTAAA+TGG | - | chr7.4:30068066-30068085 | MS.gene96090:CDS | 35.0% |
| !!! | TTTGTTGTTCATCGGTTTTG+TGG | - | chr7.4:30068059-30068078 | MS.gene96090:CDS | 35.0% |
| AAAACTCCATACCTACCTGA+CGG | - | chr7.4:30069642-30069661 | MS.gene96090:intron | 40.0% | |
| AAAGTGGTCTCATGTGTTTC+TGG | - | chr7.4:30069481-30069500 | MS.gene96090:intron | 40.0% | |
| AACTGTAGAATGCATGCTCT+GGG | - | chr7.4:30069239-30069258 | MS.gene96090:CDS | 40.0% | |
| AATAGAATTGCTGTGTGGAG+TGG | - | chr7.4:30070131-30070150 | MS.gene96090:intron | 40.0% | |
| AGGAATGTATGGGAAATGAC+AGG | - | chr7.4:30070090-30070109 | MS.gene96090:intron | 40.0% | |
| ATAGAATTGCTGTGTGGAGT+GGG | - | chr7.4:30070132-30070151 | MS.gene96090:intron | 40.0% | |
| ATGGTGATCTACTAGAGTGA+AGG | - | chr7.4:30068085-30068104 | MS.gene96090:CDS | 40.0% | |
| ATTCCCACCAAAACAGTTGA+CGG | + | chr7.4:30069805-30069824 | None:intergenic | 40.0% | |
| CAGATTGAGAATGGAGTTGA+AGG | - | chr7.4:30069705-30069724 | MS.gene96090:intron | 40.0% | |
| CATTATTCAGGAACTCTTCC+TGG | - | chr7.4:30068992-30069011 | MS.gene96090:intron | 40.0% | |
| CTCAATCTGCATATTCACCA+AGG | + | chr7.4:30069694-30069713 | None:intergenic | 40.0% | |
| CTTTCAAAGTGTGCTTTCCA+TGG | - | chr7.4:30069968-30069987 | MS.gene96090:intron | 40.0% | |
| GATCTGTGATGAAACCATAG+AGG | - | chr7.4:30069303-30069322 | MS.gene96090:intron | 40.0% | |
| GCTACATTCAAGACCTATAC+TGG | - | chr7.4:30067753-30067772 | MS.gene96090:CDS | 40.0% | |
| GGAATGTATGGGAAATGACA+GGG | - | chr7.4:30070091-30070110 | MS.gene96090:intron | 40.0% | |
| GTAACATTGGAAGGATGAAG+CGG | + | chr7.4:30067804-30067823 | None:intergenic | 40.0% | |
| GTGTTCAAACCAATGGGATT+TGG | + | chr7.4:30070323-30070342 | None:intergenic | 40.0% | |
| GTTGCAAGCAATTTGATTCC+GGG | - | chr7.4:30070212-30070231 | MS.gene96090:intron | 40.0% | |
| TAATGCGAGAGCTCATGTTT+GGG | - | chr7.4:30070237-30070256 | MS.gene96090:intron | 40.0% | |
| TATTTACAGGACTTGTACCG+AGG | - | chr7.4:30069587-30069606 | MS.gene96090:intron | 40.0% | |
| TCGTACATGAAGACAGATAC+AGG | + | chr7.4:30068885-30068904 | None:intergenic | 40.0% | |
| TCTCAGACACTTTATGTCCT+CGG | + | chr7.4:30069607-30069626 | None:intergenic | 40.0% | |
| TGAAGGCCAACTAATGAACT+GGG | - | chr7.4:30069752-30069771 | MS.gene96090:intron | 40.0% | |
| TGGAAAAGCCAGTCAATCAA+AGG | + | chr7.4:30070296-30070315 | None:intergenic | 40.0% | |
| TGTATCTGTCTTCATGTACG+AGG | - | chr7.4:30068884-30068903 | MS.gene96090:intron | 40.0% | |
| TTAATGCGAGAGCTCATGTT+TGG | - | chr7.4:30070236-30070255 | MS.gene96090:intron | 40.0% | |
| TTACCACTGACAAAACCACT+AGG | - | chr7.4:30067820-30067839 | MS.gene96090:CDS | 40.0% | |
| TTACTATGGCAAAACCTCCT+TGG | - | chr7.4:30069929-30069948 | MS.gene96090:intron | 40.0% | |
| TTCAAAGTGTGCTTTCCATG+GGG | - | chr7.4:30069970-30069989 | MS.gene96090:intron | 40.0% | |
| TTGTCAGTGGTAACATTGGA+AGG | + | chr7.4:30067813-30067832 | None:intergenic | 40.0% | |
| ! | AAGGAGGTTTTGCCATAGTA+AGG | + | chr7.4:30069930-30069949 | None:intergenic | 40.0% |
| ! | AGGAGGTTTTGCCATAGTAA+GGG | + | chr7.4:30069929-30069948 | None:intergenic | 40.0% |
| ! | ATTGGTCGACAGCATTTTGT+TGG | - | chr7.4:30070443-30070462 | MS.gene96090:CDS | 40.0% |
| ! | CTGTACCACTGCATGTTTTA+AGG | - | chr7.4:30069447-30069466 | MS.gene96090:intron | 40.0% |
| ! | CTTAGCTCAAAGTACTTGCT+TGG | - | chr7.4:30070058-30070077 | MS.gene96090:intron | 40.0% |
| ! | GCCAATTTGGTGAAGGAAAT+TGG | - | chr7.4:30070425-30070444 | MS.gene96090:intron | 40.0% |
| !! | GGAGTTGAAGGTGTTATTGT+TGG | - | chr7.4:30069717-30069736 | MS.gene96090:intron | 40.0% |
| !! | GGTTTTGTCAGTGGTAACAT+TGG | + | chr7.4:30067817-30067836 | None:intergenic | 40.0% |
| !! | GTTGAAGGTGTTATTGTTGG+TGG | - | chr7.4:30069720-30069739 | MS.gene96090:intron | 40.0% |
| !! | TGATGACGACGACTTTTTCT+TGG | - | chr7.4:30070487-30070506 | MS.gene96090:CDS | 40.0% |
| AACCAATGGGATTTGGCATG+TGG | + | chr7.4:30070316-30070335 | None:intergenic | 45.0% | |
| AAGAGCCGTGTTCAAACCAA+TGG | + | chr7.4:30070330-30070349 | None:intergenic | 45.0% | |
| AATGCGAGAGCTCATGTTTG+GGG | - | chr7.4:30070238-30070257 | MS.gene96090:intron | 45.0% | |
| ACAAATGGCAGCCTGAAAAC+TGG | + | chr7.4:30070374-30070393 | None:intergenic | 45.0% | |
| ACGATGCTAGATGGGGTTAT+GGG | - | chr7.4:30070171-30070190 | MS.gene96090:intron | 45.0% | |
| AGAGCCGTGTTCAAACCAAT+GGG | + | chr7.4:30070329-30070348 | None:intergenic | 45.0% | |
| AGCAATTCATGCAACTGAGC+AGG | - | chr7.4:30069866-30069885 | MS.gene96090:intron | 45.0% | |
| AGCTCTTGCCTTTGATTGAC+TGG | - | chr7.4:30070285-30070304 | MS.gene96090:intron | 45.0% | |
| AGTTGCATGAATTGCTTCCC+TGG | + | chr7.4:30069862-30069881 | None:intergenic | 45.0% | |
| ATACTGGAAGCAACTCAACC+AGG | - | chr7.4:30069841-30069860 | MS.gene96090:intron | 45.0% | |
| ATATATGATTGTGGGCCCCA+TGG | + | chr7.4:30069988-30070007 | None:intergenic | 45.0% | |
| ATGAATGCCACGATGCTAGA+TGG | - | chr7.4:30070162-30070181 | MS.gene96090:intron | 45.0% | |
| ATGAGCTCTCGCATTAAACC+CGG | + | chr7.4:30070233-30070252 | None:intergenic | 45.0% | |
| CAAAACCTCCTTGGAAGGTA+TGG | - | chr7.4:30069938-30069957 | MS.gene96090:intron | 45.0% | |
| CACAACATATTGGGGCTCTT+CGG | + | chr7.4:30068807-30068826 | None:intergenic | 45.0% | |
| GAACTGTAGAATGCATGCTC+TGG | - | chr7.4:30069238-30069257 | MS.gene96090:CDS | 45.0% | |
| GATTTCACAGCTGCTTGTGT+AGG | + | chr7.4:30069021-30069040 | None:intergenic | 45.0% | |
| GCAATTCATGCAACTGAGCA+GGG | - | chr7.4:30069867-30069886 | MS.gene96090:intron | 45.0% | |
| GCTCTTCCCAGTTCATTAGT+TGG | + | chr7.4:30069761-30069780 | None:intergenic | 45.0% | |
| GTGAAGGCCAACTAATGAAC+TGG | - | chr7.4:30069751-30069770 | MS.gene96090:intron | 45.0% | |
| TACCTCTCCCATTGGAGAAA+AGG | - | chr7.4:30070393-30070412 | MS.gene96090:intron | 45.0% | |
| TACTGGAAGCAACTCAACCA+GGG | - | chr7.4:30069842-30069861 | MS.gene96090:intron | 45.0% | |
| TATAATGTGCCTTCACGGAC+TGG | - | chr7.4:30070005-30070024 | MS.gene96090:intron | 45.0% | |
| TATACTGGCGTATGCTTCAC+AGG | - | chr7.4:30067768-30067787 | MS.gene96090:CDS | 45.0% | |
| TATGGCAAAACCTCCTTGGA+AGG | - | chr7.4:30069933-30069952 | MS.gene96090:intron | 45.0% | |
| TCAAGATCAAATCGACCGTC+AGG | + | chr7.4:30069660-30069679 | None:intergenic | 45.0% | |
| TCTACTAGAGTGAAGGACTC+TGG | - | chr7.4:30068092-30068111 | MS.gene96090:CDS | 45.0% | |
| TCTCATAACTACGCATTGGG+AGG | + | chr7.4:30069053-30069072 | None:intergenic | 45.0% | |
| TGAATGCCACGATGCTAGAT+GGG | - | chr7.4:30070163-30070182 | MS.gene96090:intron | 45.0% | |
| TGTGAAGCATACGCCAGTAT+AGG | + | chr7.4:30067769-30067788 | None:intergenic | 45.0% | |
| TTCCACATGCCAAATCCCAT+TGG | - | chr7.4:30070311-30070330 | MS.gene96090:intron | 45.0% | |
| TTGCTCAACTTGGAGTTGTC+AGG | - | chr7.4:30070348-30070367 | MS.gene96090:intron | 45.0% | |
| ! | ATCCTTTTCTCCAATGGGAG+AGG | + | chr7.4:30070398-30070417 | None:intergenic | 45.0% |
| ! | GCTGGTGTCAAGGAATGTAT+GGG | - | chr7.4:30070080-30070099 | MS.gene96090:intron | 45.0% |
| ! | TCCAATGGGAGAGGTACAAA+TGG | + | chr7.4:30070389-30070408 | None:intergenic | 45.0% |
| !! | CTCATGTGTTTCTGGCATCA+TGG | - | chr7.4:30069489-30069508 | MS.gene96090:intron | 45.0% |
| !! | GTTATTGTTGGTGGCACAAC+TGG | - | chr7.4:30069729-30069748 | MS.gene96090:intron | 45.0% |
| !!! | ACACCGTCAACTGTTTTGGT+GGG | - | chr7.4:30069799-30069818 | MS.gene96090:intron | 45.0% |
| !!! | GAACCTAGTGGTTTTGTCAG+TGG | + | chr7.4:30067826-30067845 | None:intergenic | 45.0% |
| AACACGGCTCTTGCTCAACT+TGG | - | chr7.4:30070338-30070357 | MS.gene96090:intron | 50.0% | |
| AATCGACCGTCAGGTAGGTA+TGG | + | chr7.4:30069651-30069670 | None:intergenic | 50.0% | |
| ACGCATTGGGAGGTGAAAAG+TGG | + | chr7.4:30069043-30069062 | None:intergenic | 50.0% | |
| AGCAACCATACCTTCCAAGG+AGG | + | chr7.4:30069946-30069965 | None:intergenic | 50.0% | |
| AGTCGTCGTCATCAAGAACC+TGG | + | chr7.4:30070481-30070500 | None:intergenic | 50.0% | |
| ATGCGAGAGCTCATGTTTGG+GGG | - | chr7.4:30070239-30070258 | MS.gene96090:intron | 50.0% | |
| ATGTCTTGACCAGTCCGTGA+AGG | + | chr7.4:30070017-30070036 | None:intergenic | 50.0% | |
| CACGATGCTAGATGGGGTTA+TGG | - | chr7.4:30070170-30070189 | MS.gene96090:intron | 50.0% | |
| CATAACCCCATCTAGCATCG+TGG | + | chr7.4:30070172-30070191 | None:intergenic | 50.0% | |
| CGATGCTAGATGGGGTTATG+GGG | - | chr7.4:30070172-30070191 | MS.gene96090:intron | 50.0% | |
| GAATGCCACGATGCTAGATG+GGG | - | chr7.4:30070164-30070183 | MS.gene96090:intron | 50.0% | |
| GATCAAATCGACCGTCAGGT+AGG | + | chr7.4:30069656-30069675 | None:intergenic | 50.0% | |
| GCCATTTGTACCTCTCCCAT+TGG | - | chr7.4:30070385-30070404 | MS.gene96090:intron | 50.0% | |
| GGAAGGATGAAGCGGAAAAG+CGG | + | chr7.4:30067796-30067815 | None:intergenic | 50.0% | |
| GTGAGCAACCATACCTTCCA+AGG | + | chr7.4:30069949-30069968 | None:intergenic | 50.0% | |
| TGTTGGAACTGAAGACGTCC+AGG | - | chr7.4:30070460-30070479 | MS.gene96090:CDS | 50.0% | |
| ! | CATGCTCTGGGTAGGATTTC+TGG | - | chr7.4:30069251-30069270 | MS.gene96090:CDS | 50.0% |
| ! | GAGTTGTCAGGCCAGTTTTC+AGG | - | chr7.4:30070360-30070379 | MS.gene96090:intron | 50.0% |
| ! | GCTCAAAGTACTTGCTTGGC+TGG | - | chr7.4:30070062-30070081 | MS.gene96090:intron | 50.0% |
| ! | GGCTGGTGTCAAGGAATGTA+TGG | - | chr7.4:30070079-30070098 | MS.gene96090:intron | 50.0% |
| ! | GGTTTTGCGGTTGGAATGCA+TGG | - | chr7.4:30069888-30069907 | MS.gene96090:intron | 50.0% |
| ! | GTAGAATGCATGCTCTGGGT+AGG | - | chr7.4:30069243-30069262 | MS.gene96090:CDS | 50.0% |
| ! | TACTTGCTTGGCTGGTGTCA+AGG | - | chr7.4:30070070-30070089 | MS.gene96090:intron | 50.0% |
| ! | TGCAACTGAGCAGGGTTTTG+CGG | - | chr7.4:30069875-30069894 | MS.gene96090:intron | 50.0% |
| !! | CACACCGTCAACTGTTTTGG+TGG | - | chr7.4:30069798-30069817 | MS.gene96090:intron | 50.0% |
| AGATGGGGTTATGGGGCTAC+TGG | - | chr7.4:30070179-30070198 | MS.gene96090:intron | 55.0% | |
| AGCTGCTTGTGTAGGCTTCC+AGG | + | chr7.4:30069013-30069032 | None:intergenic | 55.0% | |
| ! | ACTGAGCAGGGTTTTGCGGT+TGG | - | chr7.4:30069879-30069898 | MS.gene96090:intron | 55.0% |
| ! | GCGCACACCGTCAACTGTTT+TGG | - | chr7.4:30069795-30069814 | MS.gene96090:intron | 55.0% |
| !! | GTTGGTGGCACAACTGGTGA+AGG | - | chr7.4:30069735-30069754 | MS.gene96090:intron | 55.0% |
| TTGGGGCTCTTCGGCAAGCA+CGG | + | chr7.4:30068798-30068817 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 30067750 | 30070523 | 30067750 | ID=MS.gene96090 |
| chr7.4 | mRNA | 30067750 | 30070523 | 30067750 | ID=MS.gene96090.t1;Parent=MS.gene96090 |
| chr7.4 | exon | 30070432 | 30070523 | 30070432 | ID=MS.gene96090.t1.exon1;Parent=MS.gene96090.t1 |
| chr7.4 | CDS | 30070432 | 30070523 | 30070432 | ID=cds.MS.gene96090.t1;Parent=MS.gene96090.t1 |
| chr7.4 | exon | 30069191 | 30069271 | 30069191 | ID=MS.gene96090.t1.exon2;Parent=MS.gene96090.t1 |
| chr7.4 | CDS | 30069191 | 30069271 | 30069191 | ID=cds.MS.gene96090.t1;Parent=MS.gene96090.t1 |
| chr7.4 | exon | 30067750 | 30068677 | 30067750 | ID=MS.gene96090.t1.exon3;Parent=MS.gene96090.t1 |
| chr7.4 | CDS | 30067750 | 30068677 | 30067750 | ID=cds.MS.gene96090.t1;Parent=MS.gene96090.t1 |
| Gene Sequence |
| Protein sequence |
