AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03038

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03038.t1 MTR_1g088775 98.907 366 4 0 1 366 1 366 0.0 756
MS.gene03038.t1 MTR_7g075090 92.350 366 28 0 1 366 1 366 0.0 721
MS.gene03038.t1 MTR_8g036040 64.481 366 122 1 1 366 1 358 1.06e-179 503
MS.gene03038.t1 MTR_8g036035 64.228 369 122 4 1 366 1 362 1.18e-168 475
MS.gene03038.t1 MTR_8g036020 68.910 312 96 1 55 366 18 328 2.10e-160 452
MS.gene03038.t1 MTR_8g036050 63.462 312 109 1 55 366 1 307 4.77e-148 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03038.t1 AT2G45440 75.410 366 89 1 1 366 1 365 0.0 581
MS.gene03038.t1 AT3G60880 74.590 366 92 1 1 366 1 365 0.0 568
MS.gene03038.t1 AT3G60880 74.317 366 92 1 1 366 1 364 0.0 566

Find 88 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAATAGAATTTGCCAATT+TGG 0.151527 1.3:+62150982 MS.gene03038:CDS
CCGCATTGGGAGGTGGAAAT+TGG 0.197311 1.3:-62149625 None:intergenic
ACCTATTTCCTTCACCAAAT+TGG 0.206485 1.3:-62150996 None:intergenic
GGTGGGAAAATCAAGGTTAT+TGG 0.223073 1.3:+62150386 MS.gene03038:CDS
GATTATTCAGGAACTCTTAC+TGG 0.297793 1.3:+62149577 MS.gene03038:intron
ATCAAGGTTATTGGAAATAC+TGG 0.303578 1.3:+62150395 MS.gene03038:CDS
GCCAATTTGGTGAAGGAAAT+AGG 0.310672 1.3:+62150995 MS.gene03038:CDS
GCGCACACAGTTAATTGTTT+TGG 0.323823 1.3:+62150365 MS.gene03038:CDS
GTTGCAAGCAATCTGATTCC+TGG 0.342044 1.3:+62150782 MS.gene03038:CDS
GTGTTCAAACCAATGGGATT+TGG 0.372649 1.3:-62150890 None:intergenic
TGTTGGAACTGAAGACGTTC+AGG 0.373512 1.3:+62151030 MS.gene03038:CDS
AGCTCTTGCCTTTGATTGAC+TGG 0.378010 1.3:+62150855 MS.gene03038:CDS
GCTACATTGAAGAGCTATAC+TGG 0.379000 1.3:+62149053 MS.gene03038:CDS
ATCAATGCCATGATGCTAGA+TGG 0.385109 1.3:+62150732 MS.gene03038:CDS
TTGCTCAACTTGGAGTTGTC+AGG 0.401383 1.3:+62150918 MS.gene03038:CDS
ACAAATGGCAACCTGAAAAC+TGG 0.401923 1.3:-62150941 None:intergenic
CTTTCAAAGTGTGCTTTCCA+TGG 0.406034 1.3:+62150538 MS.gene03038:CDS
AACACGGCTCTTGCTCAACT+TGG 0.407658 1.3:+62150908 MS.gene03038:CDS
GGAAGGATGAACCGGAAAAC+CGG 0.409763 1.3:-62149093 None:intergenic
TCATCTCAAAACTCCGCATT+GGG 0.420171 1.3:-62149638 None:intergenic
GGAGTTGAAGGTGTTATTGT+TGG 0.429517 1.3:+62150287 MS.gene03038:CDS
TTACTACGGCAAAACCTCAT+TGG 0.439136 1.3:+62150499 MS.gene03038:CDS
TATAATGTGCCTTCACGAAC+TGG 0.441534 1.3:+62150575 MS.gene03038:CDS
CGTAGTAAGGGTTTATATGA+AGG 0.442818 1.3:-62150484 None:intergenic
GTTATTGTTGGTGGCACAAC+TGG 0.447799 1.3:+62150299 MS.gene03038:CDS
CTTAGCTCAAAATACTTGCT+TGG 0.461095 1.3:+62150628 MS.gene03038:CDS
GCTCAAAATACTTGCTTGGC+TGG 0.463469 1.3:+62150632 MS.gene03038:CDS
TTCATCTCAAAACTCCGCAT+TGG 0.466411 1.3:-62149639 None:intergenic
GTGAAGGTCAATTAATGAGC+TGG 0.470889 1.3:+62150321 MS.gene03038:CDS
ATGCGAGAACTCATGTTTGA+GGG 0.476788 1.3:+62150809 MS.gene03038:CDS
AGATGGGGTTATGGAGCTAC+TGG 0.478069 1.3:+62150749 MS.gene03038:CDS
TCAAGATCAAATCGACCATC+AGG 0.480309 1.3:-62150227 None:intergenic
GTTGAAGGTGTTATTGTTGG+TGG 0.483414 1.3:+62150290 MS.gene03038:CDS
GGTGTCTGCTTCAGAGGATC+CGG 0.484695 1.3:+62149074 MS.gene03038:CDS
CAAAACTCCGCATTGGGAGG+TGG 0.487292 1.3:-62149632 None:intergenic
CATGATGCTAGATGGGGTTA+TGG 0.493610 1.3:+62150740 MS.gene03038:CDS
CAAAACCTCATTGGATGGTA+TGG 0.498271 1.3:+62150508 MS.gene03038:CDS
TACTTGCTTGGCTGGTGTCA+AGG 0.500800 1.3:+62150640 MS.gene03038:CDS
CAGATCGAGAGTGGAGTTGA+AGG 0.501168 1.3:+62150275 MS.gene03038:CDS
ATAGAATCGTTGTGTGGAGC+GGG 0.501345 1.3:+62150702 MS.gene03038:CDS
AATGCGAGAACTCATGTTTG+AGG 0.508177 1.3:+62150808 MS.gene03038:CDS
GTAAGATCGGAAGGATGAAC+CGG 0.510311 1.3:-62149101 None:intergenic
AACCAATGGGATTTGGCATG+TGG 0.510972 1.3:-62150883 None:intergenic
TATACTGGTGTCTGCTTCAG+AGG 0.514396 1.3:+62149068 MS.gene03038:CDS
GCAATTCATGCCACTGAGCA+AGG 0.519046 1.3:+62150437 MS.gene03038:CDS
TTTCAAAGTGTGCTTTCCAT+GGG 0.520623 1.3:+62150539 MS.gene03038:CDS
GATTTCACAGCTGCTTGTGT+AGG 0.522599 1.3:-62149603 None:intergenic
AAGAGCTTAGAATTCAATGT+AGG 0.522936 1.3:-62150839 None:intergenic
AAGAGCCGTGTTCAAACCAA+TGG 0.526094 1.3:-62150897 None:intergenic
TCTAATGGGAGAGGTACAAA+TGG 0.526400 1.3:-62150956 None:intergenic
AATCGACCATCAGGTAGGTA+TGG 0.528759 1.3:-62150218 None:intergenic
AGAATTTGCCAATTTGGTGA+AGG 0.533742 1.3:+62150988 MS.gene03038:CDS
AGGAATGTGTGGGAAATGAC+AGG 0.543586 1.3:+62150660 MS.gene03038:CDS
TCTTGAAGCATACGATGCCT+TGG 0.545550 1.3:+62150244 MS.gene03038:CDS
TTCCACATGCCAAATCCCAT+TGG 0.545798 1.3:+62150881 MS.gene03038:CDS
GGCTGGTGTCAAGGAATGTG+TGG 0.556357 1.3:+62150649 MS.gene03038:CDS
TACGGCAAAACCTCATTGGA+TGG 0.560651 1.3:+62150503 MS.gene03038:CDS
CATAACCCCATCTAGCATCA+TGG 0.567567 1.3:-62150739 None:intergenic
TTGTTAGTAGTAAGATCGGA+AGG 0.567613 1.3:-62149110 None:intergenic
TCAATGCCATGATGCTAGAT+GGG 0.567969 1.3:+62150733 MS.gene03038:CDS
TGGAAAAGCCAGTCAATCAA+AGG 0.572095 1.3:-62150863 None:intergenic
GTAGTAAGGGTTTATATGAA+GGG 0.573666 1.3:-62150483 None:intergenic
ATATATGATCGTGGGTCCCA+TGG 0.576230 1.3:-62150555 None:intergenic
AGAGCCGTGTTCAAACCAAT+GGG 0.577523 1.3:-62150896 None:intergenic
GTAAATATGCAGATCGAGAG+TGG 0.578320 1.3:+62150266 MS.gene03038:CDS
TGAAGGTCAATTAATGAGCT+GGG 0.584644 1.3:+62150322 MS.gene03038:CDS
TATTTACAGGACTTGTACAG+AGG 0.599967 1.3:+62150157 MS.gene03038:intron
ATGAGTTCTCGCATTAAACC+AGG 0.602598 1.3:-62150800 None:intergenic
CTTCATATAAACCCTTACTA+CGG 0.607174 1.3:+62150485 MS.gene03038:CDS
AATAGAATCGTTGTGTGGAG+CGG 0.613867 1.3:+62150701 MS.gene03038:CDS
AAATCCCATTGGTTTGAACA+CGG 0.620889 1.3:+62150892 MS.gene03038:CDS
TCTCAAAACTCCGCATTGGG+AGG 0.623035 1.3:-62149635 None:intergenic
GGCACATTATATATGATCGT+GGG 0.623516 1.3:-62150563 None:intergenic
AGGCACATTATATATGATCG+TGG 0.625176 1.3:-62150564 None:intergenic
AAAACTCCATACCTACCTGA+TGG 0.627623 1.3:+62150212 MS.gene03038:CDS
ATACTGGAAGTAACTCGACA+AGG 0.635535 1.3:+62150411 MS.gene03038:CDS
TACTGGAAGTAACTCGACAA+GGG 0.637824 1.3:+62150412 MS.gene03038:CDS
CTCGATCTGCATATTTACCA+AGG 0.639513 1.3:-62150261 None:intergenic
ATGTCTTGACCAGTTCGTGA+AGG 0.650374 1.3:-62150584 None:intergenic
TATTCAGGAACTCTTACTGG+AGG 0.652852 1.3:+62149580 MS.gene03038:intron
GTTGGTGGCACAACTGGTGA+AGG 0.663404 1.3:+62150305 MS.gene03038:CDS
GCTGGTGTCAAGGAATGTGT+GGG 0.663954 1.3:+62150650 MS.gene03038:CDS
CTGATAATAGAATCGTTGTG+TGG 0.669847 1.3:+62150696 MS.gene03038:CDS
AACCGCAAAACCTTGCTCAG+TGG 0.673625 1.3:-62150447 None:intergenic
GATCAAATCGACCATCAGGT+AGG 0.678861 1.3:-62150223 None:intergenic
AGCAACCATACCATCCAATG+AGG 0.685283 1.3:-62150513 None:intergenic
CCAATTTCCACCTCCCAATG+CGG 0.691962 1.3:+62149625 MS.gene03038:CDS
CAATGCCATGATGCTAGATG+GGG 0.711874 1.3:+62150734 MS.gene03038:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAACATTAAATAAAAAAAT+TGG - chr1.3:62149550-62149569 None:intergenic 10.0%
!! AGATTTCAAAATAAAGAAAA+TGG - chr1.3:62149156-62149175 None:intergenic 15.0%
!! AAGCTATATATTGTATTTAC+AGG + chr1.3:62150144-62150163 MS.gene03038:intron 20.0%
!! AATGAATTCGATGAAATAAA+CGG + chr1.3:62149319-62149338 MS.gene03038:intron 20.0%
!! TATTGTGATTTATGATGAAA+CGG + chr1.3:62149848-62149867 MS.gene03038:intron 20.0%
!!! AATTCTATTCTTTTCTCTAA+TGG - chr1.3:62150974-62150993 None:intergenic 20.0%
!!! ATGATTTTAATGATGATGAA+GGG + chr1.3:62149367-62149386 MS.gene03038:intron 20.0%
!!! ATTCTATTCTTTTCTCTAAT+GGG - chr1.3:62150973-62150992 None:intergenic 20.0%
!!! GTTTTCATCTTTTTATTTTC+TGG + chr1.3:62149795-62149814 MS.gene03038:intron 20.0%
!!! TATGATTTTAATGATGATGA+AGG + chr1.3:62149366-62149385 MS.gene03038:intron 20.0%
!!! TTCTAAGGAGTATATTTAAA+AGG + chr1.3:62150043-62150062 MS.gene03038:intron 20.0%
! AAGAATAGAATTTGCCAATT+TGG + chr1.3:62150982-62151001 MS.gene03038:CDS 25.0%
! AATCTCAAATTGAATGATAG+AGG - chr1.3:62149926-62149945 None:intergenic 25.0%
! AGTATCAAAACTAATGAATG+TGG - chr1.3:62149697-62149716 None:intergenic 25.0%
! ATTGTGATTTATGATGAAAC+GGG + chr1.3:62149849-62149868 MS.gene03038:intron 25.0%
! GAAAAACAAATCCAAATTAG+TGG - chr1.3:62149904-62149923 None:intergenic 25.0%
! TTGCATATAGACAAATCAAA+CGG - chr1.3:62149239-62149258 None:intergenic 25.0%
!! AATCATGGAATCACAAATTT+TGG + chr1.3:62150114-62150133 MS.gene03038:intron 25.0%
!! GTTTTTGTTAGTAGTAAGAT+CGG - chr1.3:62149117-62149136 None:intergenic 25.0%
!! TAAGGAGTATATTTAAAAGG+TGG + chr1.3:62150046-62150065 MS.gene03038:intron 25.0%
!! TTGAGAGTATAATTTAGCTA+AGG + chr1.3:62149418-62149437 MS.gene03038:intron 25.0%
!!! AGATTTTGATTTGACATACA+AGG + chr1.3:62149941-62149960 MS.gene03038:intron 25.0%
!!! TGTTGCTTTTGTTTTAATCA+TGG + chr1.3:62150099-62150118 MS.gene03038:intron 25.0%
!!! TTTTGAGATGAAAAATAGGT+TGG + chr1.3:62149650-62149669 MS.gene03038:intron 25.0%
AAGAGCTTAGAATTCAATGT+AGG - chr1.3:62150842-62150861 None:intergenic 30.0%
ACAAAAGCAACAACACAAAT+AGG - chr1.3:62150091-62150110 None:intergenic 30.0%
AGCACAATCAATATCAATCA+CGG - chr1.3:62149496-62149515 None:intergenic 30.0%
ATCAAGGTTATTGGAAATAC+TGG + chr1.3:62150395-62150414 MS.gene03038:CDS 30.0%
CTTCATATAAACCCTTACTA+CGG + chr1.3:62150485-62150504 MS.gene03038:CDS 30.0%
CTTGCTTATTTCCACTAATT+TGG + chr1.3:62149890-62149909 MS.gene03038:intron 30.0%
GAAAATGGAAAATTTGAACC+TGG - chr1.3:62149141-62149160 None:intergenic 30.0%
GTAGTAAGGGTTTATATGAA+GGG - chr1.3:62150486-62150505 None:intergenic 30.0%
GTTTGTCTGTATGATTATTC+AGG + chr1.3:62149565-62149584 MS.gene03038:intron 30.0%
TTACTACTAACAAAAACACC+AGG + chr1.3:62149120-62149139 MS.gene03038:CDS 30.0%
! AGATTTTGTTAGCATGTATG+AGG + chr1.3:62149469-62149488 MS.gene03038:intron 30.0%
! CAAAATCTAAGATACAGGAA+TGG - chr1.3:62149457-62149476 None:intergenic 30.0%
! GCTAACAAAATCTAAGATAC+AGG - chr1.3:62149462-62149481 None:intergenic 30.0%
!! ATTGCAGCTGAATTTGATTT+TGG + chr1.3:62149263-62149282 MS.gene03038:intron 30.0%
!! TTGATTTGTCTATATGCAAG+TGG + chr1.3:62149240-62149259 MS.gene03038:intron 30.0%
!!! ACACAGTTAATTGTTTTGGT+GGG + chr1.3:62150369-62150388 MS.gene03038:CDS 30.0%
!!! GCTAAGTTTTGAATTACATG+CGG - chr1.3:62150614-62150633 None:intergenic 30.0%
!!! GGAGTTTTGAGATGAAAAAT+AGG + chr1.3:62149646-62149665 MS.gene03038:CDS 30.0%
AAGCATTATTCCACTAAGTG+GGG + chr1.3:62149732-62149751 MS.gene03038:intron 35.0%
ACCTATTTCCTTCACCAAAT+TGG - chr1.3:62150999-62151018 None:intergenic 35.0%
AGGCACATTATATATGATCG+TGG - chr1.3:62150567-62150586 None:intergenic 35.0%
CAAGCATTATTCCACTAAGT+GGG + chr1.3:62149731-62149750 MS.gene03038:intron 35.0%
CGTAGTAAGGGTTTATATGA+AGG - chr1.3:62150487-62150506 None:intergenic 35.0%
CTGATAATAGAATCGTTGTG+TGG + chr1.3:62150696-62150715 MS.gene03038:CDS 35.0%
CTTAGCTCAAAATACTTGCT+TGG + chr1.3:62150628-62150647 MS.gene03038:CDS 35.0%
GATTATTCAGGAACTCTTAC+TGG + chr1.3:62149577-62149596 MS.gene03038:intron 35.0%
GCACAATCAATATCAATCAC+GGG - chr1.3:62149495-62149514 None:intergenic 35.0%
GGCACATTATATATGATCGT+GGG - chr1.3:62150566-62150585 None:intergenic 35.0%
TATTTACAGGACTTGTACAG+AGG + chr1.3:62150157-62150176 MS.gene03038:intron 35.0%
TGAAGGTCAATTAATGAGCT+GGG + chr1.3:62150322-62150341 MS.gene03038:CDS 35.0%
TTGTTAGTAGTAAGATCGGA+AGG - chr1.3:62149113-62149132 None:intergenic 35.0%
TTTCAAAGTGTGCTTTCCAT+GGG + chr1.3:62150539-62150558 MS.gene03038:CDS 35.0%
! AGAATTTGCCAATTTGGTGA+AGG + chr1.3:62150988-62151007 MS.gene03038:CDS 35.0%
! ATAGGTCGTCAACATTTTGT+TGG + chr1.3:62151013-62151032 MS.gene03038:CDS 35.0%
! ATTCTTTTCTCTAATGGGAG+AGG - chr1.3:62150968-62150987 None:intergenic 35.0%
! TTCTGGAAGAGACACAAATA+TGG + chr1.3:62149812-62149831 MS.gene03038:intron 35.0%
!! AAATCCCATTGGTTTGAACA+CGG + chr1.3:62150892-62150911 MS.gene03038:CDS 35.0%
!! AGGTAGGTATGGAGTTTTAA+TGG - chr1.3:62150210-62150229 None:intergenic 35.0%
!! TGATGACAACGACTTTTTCT+TGG + chr1.3:62151057-62151076 MS.gene03038:CDS 35.0%
!!! AAGTTTTGAATTACATGCGG+TGG - chr1.3:62150611-62150630 None:intergenic 35.0%
!!! CACACAGTTAATTGTTTTGG+TGG + chr1.3:62150368-62150387 MS.gene03038:CDS 35.0%
!!! TTGTTTTGGTGGGAAAATCA+AGG + chr1.3:62150379-62150398 MS.gene03038:CDS 35.0%
AAAACTCCATACCTACCTGA+TGG + chr1.3:62150212-62150231 MS.gene03038:CDS 40.0%
AATAGAATCGTTGTGTGGAG+CGG + chr1.3:62150701-62150720 MS.gene03038:CDS 40.0%
AATGCGAGAACTCATGTTTG+AGG + chr1.3:62150808-62150827 MS.gene03038:CDS 40.0%
ACAAATGGCAACCTGAAAAC+TGG - chr1.3:62150944-62150963 None:intergenic 40.0%
ATACTCCTTAGAACATGCAG+CGG - chr1.3:62150036-62150055 None:intergenic 40.0%
ATACTGGAAGTAACTCGACA+AGG + chr1.3:62150411-62150430 MS.gene03038:CDS 40.0%
ATCAATGCCATGATGCTAGA+TGG + chr1.3:62150732-62150751 MS.gene03038:CDS 40.0%
ATGAGTTCTCGCATTAAACC+AGG - chr1.3:62150803-62150822 None:intergenic 40.0%
ATGCGAGAACTCATGTTTGA+GGG + chr1.3:62150809-62150828 MS.gene03038:CDS 40.0%
ATTATTCCACTAAGTGGGGT+TGG + chr1.3:62149736-62149755 MS.gene03038:intron 40.0%
CAAAACCTCATTGGATGGTA+TGG + chr1.3:62150508-62150527 MS.gene03038:CDS 40.0%
CCAAGCATTATTCCACTAAG+TGG + chr1.3:62149730-62149749 MS.gene03038:intron 40.0%
CCACTTAGTGGAATAATGCT+TGG - chr1.3:62149733-62149752 None:intergenic 40.0%
CTCGATCTGCATATTTACCA+AGG - chr1.3:62150264-62150283 None:intergenic 40.0%
CTTTCAAAGTGTGCTTTCCA+TGG + chr1.3:62150538-62150557 MS.gene03038:CDS 40.0%
GCTACATTGAAGAGCTATAC+TGG + chr1.3:62149053-62149072 MS.gene03038:CDS 40.0%
GGTGGGAAAATCAAGGTTAT+TGG + chr1.3:62150386-62150405 MS.gene03038:CDS 40.0%
GTAAATATGCAGATCGAGAG+TGG + chr1.3:62150266-62150285 MS.gene03038:CDS 40.0%
GTGAAGGTCAATTAATGAGC+TGG + chr1.3:62150321-62150340 MS.gene03038:CDS 40.0%
GTGTTCAAACCAATGGGATT+TGG - chr1.3:62150893-62150912 None:intergenic 40.0%
TACTGGAAGTAACTCGACAA+GGG + chr1.3:62150412-62150431 MS.gene03038:CDS 40.0%
TATAATGTGCCTTCACGAAC+TGG + chr1.3:62150575-62150594 MS.gene03038:CDS 40.0%
TATTCAGGAACTCTTACTGG+AGG + chr1.3:62149580-62149599 MS.gene03038:intron 40.0%
TCAAGATCAAATCGACCATC+AGG - chr1.3:62150230-62150249 None:intergenic 40.0%
TCAATGCCATGATGCTAGAT+GGG + chr1.3:62150733-62150752 MS.gene03038:CDS 40.0%
TCATCTCAAAACTCCGCATT+GGG - chr1.3:62149641-62149660 None:intergenic 40.0%
TGGAAAAGCCAGTCAATCAA+AGG - chr1.3:62150866-62150885 None:intergenic 40.0%
TTACTACGGCAAAACCTCAT+TGG + chr1.3:62150499-62150518 MS.gene03038:CDS 40.0%
TTCATCTCAAAACTCCGCAT+TGG - chr1.3:62149642-62149661 None:intergenic 40.0%
! AATGAGGTTTTGCCGTAGTA+AGG - chr1.3:62150500-62150519 None:intergenic 40.0%
! ATGAGGTTTTGCCGTAGTAA+GGG - chr1.3:62150499-62150518 None:intergenic 40.0%
! GCCAATTTGGTGAAGGAAAT+AGG + chr1.3:62150995-62151014 MS.gene03038:CDS 40.0%
! GCGCACACAGTTAATTGTTT+TGG + chr1.3:62150365-62150384 MS.gene03038:CDS 40.0%
! TCTAATGGGAGAGGTACAAA+TGG - chr1.3:62150959-62150978 None:intergenic 40.0%
!! GGAGTTGAAGGTGTTATTGT+TGG + chr1.3:62150287-62150306 MS.gene03038:CDS 40.0%
!! GTTGAAGGTGTTATTGTTGG+TGG + chr1.3:62150290-62150309 MS.gene03038:CDS 40.0%
AACCAATGGGATTTGGCATG+TGG - chr1.3:62150886-62150905 None:intergenic 45.0%
AAGAGCCGTGTTCAAACCAA+TGG - chr1.3:62150900-62150919 None:intergenic 45.0%
AATCGACCATCAGGTAGGTA+TGG - chr1.3:62150221-62150240 None:intergenic 45.0%
AGAGCCGTGTTCAAACCAAT+GGG - chr1.3:62150899-62150918 None:intergenic 45.0%
AGCAACCATACCATCCAATG+AGG - chr1.3:62150516-62150535 None:intergenic 45.0%
AGCTCTTGCCTTTGATTGAC+TGG + chr1.3:62150855-62150874 MS.gene03038:CDS 45.0%
AGGAATGTGTGGGAAATGAC+AGG + chr1.3:62150660-62150679 MS.gene03038:CDS 45.0%
ATAGAATCGTTGTGTGGAGC+GGG + chr1.3:62150702-62150721 MS.gene03038:CDS 45.0%
ATATATGATCGTGGGTCCCA+TGG - chr1.3:62150558-62150577 None:intergenic 45.0%
ATGTCTTGACCAGTTCGTGA+AGG - chr1.3:62150587-62150606 None:intergenic 45.0%
CAATGCCATGATGCTAGATG+GGG + chr1.3:62150734-62150753 MS.gene03038:CDS 45.0%
CATAACCCCATCTAGCATCA+TGG - chr1.3:62150742-62150761 None:intergenic 45.0%
CATGATGCTAGATGGGGTTA+TGG + chr1.3:62150740-62150759 MS.gene03038:CDS 45.0%
GATCAAATCGACCATCAGGT+AGG - chr1.3:62150226-62150245 None:intergenic 45.0%
GATTTCACAGCTGCTTGTGT+AGG - chr1.3:62149606-62149625 None:intergenic 45.0%
GCTCAAAATACTTGCTTGGC+TGG + chr1.3:62150632-62150651 MS.gene03038:CDS 45.0%
GTAAGATCGGAAGGATGAAC+CGG - chr1.3:62149104-62149123 None:intergenic 45.0%
GTTGCAAGCAATCTGATTCC+TGG + chr1.3:62150782-62150801 MS.gene03038:CDS 45.0%
TACGGCAAAACCTCATTGGA+TGG + chr1.3:62150503-62150522 MS.gene03038:CDS 45.0%
TATACTGGTGTCTGCTTCAG+AGG + chr1.3:62149068-62149087 MS.gene03038:CDS 45.0%
TCTTGAAGCATACGATGCCT+TGG + chr1.3:62150244-62150263 MS.gene03038:CDS 45.0%
TGTTGGAACTGAAGACGTTC+AGG + chr1.3:62151030-62151049 MS.gene03038:CDS 45.0%
TTCCACATGCCAAATCCCAT+TGG + chr1.3:62150881-62150900 MS.gene03038:CDS 45.0%
TTGCTCAACTTGGAGTTGTC+AGG + chr1.3:62150918-62150937 MS.gene03038:CDS 45.0%
!! GTTATTGTTGGTGGCACAAC+TGG + chr1.3:62150299-62150318 MS.gene03038:CDS 45.0%
AACACGGCTCTTGCTCAACT+TGG + chr1.3:62150908-62150927 MS.gene03038:CDS 50.0%
AACCGCAAAACCTTGCTCAG+TGG - chr1.3:62150450-62150469 None:intergenic 50.0%
AGATGGGGTTATGGAGCTAC+TGG + chr1.3:62150749-62150768 MS.gene03038:CDS 50.0%
CAGATCGAGAGTGGAGTTGA+AGG + chr1.3:62150275-62150294 MS.gene03038:CDS 50.0%
CCAATTTCCACCTCCCAATG+CGG + chr1.3:62149625-62149644 MS.gene03038:CDS 50.0%
CTAATGCCAACCCCACTTAG+TGG - chr1.3:62149745-62149764 None:intergenic 50.0%
CTGTACCGCTGCATGTTCTA+AGG + chr1.3:62150028-62150047 MS.gene03038:intron 50.0%
GCAATTCATGCCACTGAGCA+AGG + chr1.3:62150437-62150456 MS.gene03038:CDS 50.0%
GGAAGGATGAACCGGAAAAC+CGG - chr1.3:62149096-62149115 None:intergenic 50.0%
TCTCAAAACTCCGCATTGGG+AGG - chr1.3:62149638-62149657 None:intergenic 50.0%
! ACTGAGCAAGGTTTTGCGGT+TGG + chr1.3:62150449-62150468 MS.gene03038:CDS 50.0%
! CTTCAGAGGATCCGGTTTTC+CGG + chr1.3:62149082-62149101 MS.gene03038:CDS 50.0%
! GAGTTGTCAGGCCAGTTTTC+AGG + chr1.3:62150930-62150949 MS.gene03038:CDS 50.0%
! GCTGGTGTCAAGGAATGTGT+GGG + chr1.3:62150650-62150669 MS.gene03038:CDS 50.0%
! GGTTTTGCGGTTGGAATGCA+TGG + chr1.3:62150458-62150477 MS.gene03038:CDS 50.0%
! TACTTGCTTGGCTGGTGTCA+AGG + chr1.3:62150640-62150659 MS.gene03038:CDS 50.0%
! TGCCACTGAGCAAGGTTTTG+CGG + chr1.3:62150445-62150464 MS.gene03038:CDS 50.0%
AAGGTGGTCTCGCTTGCTTC+TGG + chr1.3:62150062-62150081 MS.gene03038:intron 55.0%
CAAAACTCCGCATTGGGAGG+TGG - chr1.3:62149635-62149654 None:intergenic 55.0%
CCGCATTGGGAGGTGGAAAT+TGG - chr1.3:62149628-62149647 None:intergenic 55.0%
GGTGTCTGCTTCAGAGGATC+CGG + chr1.3:62149074-62149093 MS.gene03038:CDS 55.0%
! GGCTGGTGTCAAGGAATGTG+TGG + chr1.3:62150649-62150668 MS.gene03038:CDS 55.0%
!! GTTGGTGGCACAACTGGTGA+AGG + chr1.3:62150305-62150324 MS.gene03038:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 62149050 62151093 62149050 ID=MS.gene03038
chr1.3 mRNA 62149050 62151093 62149050 ID=MS.gene03038.t1;Parent=MS.gene03038
chr1.3 exon 62149050 62149141 62149050 ID=MS.gene03038.t1.exon1;Parent=MS.gene03038.t1
chr1.3 CDS 62149050 62149141 62149050 ID=cds.MS.gene03038.t1;Parent=MS.gene03038.t1
chr1.3 exon 62149587 62149667 62149587 ID=MS.gene03038.t1.exon2;Parent=MS.gene03038.t1
chr1.3 CDS 62149587 62149667 62149587 ID=cds.MS.gene03038.t1;Parent=MS.gene03038.t1
chr1.3 exon 62150166 62151093 62150166 ID=MS.gene03038.t1.exon3;Parent=MS.gene03038.t1
chr1.3 CDS 62150166 62151093 62150166 ID=cds.MS.gene03038.t1;Parent=MS.gene03038.t1
Gene Sequence

>MS.gene03038

ATGGCTACATTGAAGAGCTATACTGGTGTCTGCTTCAGAGGATCCGGTTTTCCGGTTCATCCTTCCGATCTTACTACTAACAAAAACACCAGGTTCAAATTTTCCATTTTCTTTATTTTGAAATCTGAATGACTGAAGTGTATTTATGCATGTTTATTGAATTTATTTTTGAACATTTTTTTTGTTCCGTTTGATTTGTCTATATGCAAGTGGATTGCAGCTGAATTTGATTTTGGAATGAATGAAAAAAATGTGTCATTTGTGAAAATAATGAATTCGATGAAATAAACGGAGTTTCAAATGCATATTTGATATGTATGATTTTAATGATGATGAAGGGTATGCTTTGAGTCTACTATGTCTTTGCATTGAGAGTATAATTTAGCTAAGGTTGATACATATGACCATTCCTGTATCTTAGATTTTGTTAGCATGTATGAGGCCCGTGATTGATATTGATTGTGCTGTTGATAACATTTCAATCTTGTATTATCAATCCAATTTTTTTATTTAATGTTTGTCTGTATGATTATTCAGGAACTCTTACTGGAGGCCTACACAAGCAGCTGTGAAATCCAATTTCCACCTCCCAATGCGGAGTTTTGAGATGAAAAATAGGTTGGTTGAATAATGAATTTACTGTGCCACATTCATTAGTTTTGATACTACAGCATAAAAAACCAAGCATTATTCCACTAAGTGGGGTTGGCATTAGTTTTCATACTAAATTATATATTTTTCATTTGTTTTCATCTTTTTATTTTCTGGAAGAGACACAAATATGGTTTTACAATATGATATTGTGATTTATGATGAAACGGGAGATTTAAACAATAGCTTCTTGCTTATTTCCACTAATTTGGATTTGTTTTTCCTCTATCATTCAATTTGAGATTTTGATTTGACATACAAGGTTGACTAGTTCTTTGATCTGCAAAGTTATTTTACATTGATTTATATTTTTTTTATAAACTGCAACTGTACCGCTGCATGTTCTAAGGAGTATATTTAAAAGGTGGTCTCGCTTGCTTCTGGCTGCCTATTTGTGTTGTTGCTTTTGTTTTAATCATGGAATCACAAATTTTGGACTAATGAAGCTATATATTGTATTTACAGGACTTGTACAGAGGACATTAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATACGATGCCTTGGTAAATATGCAGATCGAGAGTGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGTCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCGCACACAGTTAATTGTTTTGGTGGGAAAATCAAGGTTATTGGAAATACTGGAAGTAACTCGACAAGGGAAGCAATTCATGCCACTGAGCAAGGTTTTGCGGTTGGAATGCATGGTGCCCTTCATATAAACCCTTACTACGGCAAAACCTCATTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGACCCACGATCATATATAATGTGCCTTCACGAACTGGTCAAGACATTCCACCGCATGTAATTCAAAACTTAGCTCAAAATACTTGCTTGGCTGGTGTCAAGGAATGTGTGGGAAATGACAGGATCAAAGAGTATACTGATAATAGAATCGTTGTGTGGAGCGGGAACGATGATCAATGCCATGATGCTAGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAATCTGATTCCTGGTTTAATGCGAGAACTCATGTTTGAGGGCAAAAATCCTACATTGAATTCTAAGCTCTTGCCTTTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACGGCTCTTGCTCAACTTGGAGTTGTCAGGCCAGTTTTCAGGTTGCCATTTGTACCTCTCCCATTAGAGAAAAGAATAGAATTTGCCAATTTGGTGAAGGAAATAGGTCGTCAACATTTTGTTGGAACTGAAGACGTTCAGGTTCTTGATGACAACGACTTTTTCTTGGTTAGTCGATATTAA
Protein sequence

>MS.gene03038.t1

MATLKSYTGVCFRGSGFPVHPSDLTTNKNTRNSYWRPTQAAVKSNFHLPMRSFEMKNRTCTEDIKCLRLITAIKTPYLPDGRFDLEAYDALVNMQIESGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQNLAQNTCLAGVKECVGNDRIKEYTDNRIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMRELMFEGKNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPLEKRIEFANLVKEIGRQHFVGTEDVQVLDDNDFFLVSRY