Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01696.t1 | XP_003593373.1 | 95.2 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 1.80E-59 | 238.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01696.t1 | Q8LDI5 | 67.9 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 1.5e-38 | 160.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01696.t1 | B7FIZ6 | 95.2 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 1.3e-59 | 238.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene01696 | MS.gene24227 | PPI |
MS.gene01696 | MS.gene79654 | PPI |
MS.gene01696 | MS.gene014475 | PPI |
MS.gene01696 | MS.gene74758 | PPI |
MS.gene01696 | MS.gene064706 | PPI |
MS.gene01696 | MS.gene043301 | PPI |
MS.gene01696 | MS.gene42302 | PPI |
MS.gene01696 | MS.gene27271 | PPI |
MS.gene01696 | MS.gene69451 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01696.t1 | MTR_2g010750 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 7.66e-85 | 243 |
MS.gene01696.t1 | MTR_4g081380 | 59.322 | 118 | 48 | 0 | 5 | 122 | 6 | 123 | 2.52e-50 | 156 |
MS.gene01696.t1 | MTR_2g082590 | 60.714 | 112 | 44 | 0 | 8 | 119 | 9 | 120 | 1.80e-49 | 154 |
MS.gene01696.t1 | MTR_2g010750 | 91.139 | 79 | 7 | 0 | 1 | 79 | 1 | 79 | 5.75e-49 | 151 |
MS.gene01696.t1 | MTR_2g082590 | 54.400 | 125 | 44 | 1 | 8 | 119 | 9 | 133 | 1.59e-45 | 144 |
MS.gene01696.t1 | MTR_4g081380 | 62.857 | 70 | 26 | 0 | 5 | 74 | 6 | 75 | 6.50e-28 | 98.6 |
MS.gene01696.t1 | MTR_1g023140 | 41.346 | 104 | 61 | 0 | 9 | 112 | 6 | 109 | 1.53e-26 | 95.9 |
MS.gene01696.t1 | MTR_8g005320 | 37.500 | 112 | 70 | 0 | 1 | 112 | 18 | 129 | 3.84e-26 | 95.5 |
MS.gene01696.t1 | MTR_3g112410 | 40.952 | 105 | 62 | 0 | 8 | 112 | 5 | 109 | 1.44e-25 | 93.2 |
MS.gene01696.t1 | MTR_8g006685 | 36.842 | 114 | 72 | 0 | 1 | 114 | 87 | 200 | 4.31e-25 | 94.7 |
MS.gene01696.t1 | MTR_8g006560 | 36.842 | 114 | 72 | 0 | 1 | 114 | 87 | 200 | 4.31e-25 | 94.7 |
MS.gene01696.t1 | MTR_7g073680 | 35.897 | 117 | 75 | 0 | 2 | 118 | 17 | 133 | 6.97e-25 | 92.4 |
MS.gene01696.t1 | MTR_5g021180 | 40.541 | 111 | 66 | 0 | 8 | 118 | 7 | 117 | 7.27e-25 | 91.7 |
MS.gene01696.t1 | MTR_7g009070 | 39.362 | 94 | 57 | 0 | 20 | 113 | 37 | 130 | 1.91e-24 | 90.9 |
MS.gene01696.t1 | MTR_5g037950 | 40.000 | 105 | 63 | 0 | 9 | 113 | 19 | 123 | 1.19e-18 | 75.9 |
MS.gene01696.t1 | MTR_8g107460 | 32.692 | 104 | 70 | 0 | 9 | 112 | 254 | 357 | 7.80e-18 | 77.8 |
MS.gene01696.t1 | MTR_5g037930 | 37.143 | 105 | 66 | 0 | 9 | 113 | 20 | 124 | 9.63e-17 | 71.2 |
MS.gene01696.t1 | MTR_5g037890 | 39.048 | 105 | 64 | 0 | 9 | 113 | 18 | 122 | 2.39e-16 | 70.1 |
MS.gene01696.t1 | MTR_1g098660 | 34.091 | 88 | 56 | 2 | 28 | 113 | 75 | 162 | 4.71e-14 | 65.1 |
MS.gene01696.t1 | MTR_4g088905 | 33.708 | 89 | 59 | 0 | 24 | 112 | 14 | 102 | 2.00e-13 | 65.9 |
MS.gene01696.t1 | MTR_8g059015 | 35.632 | 87 | 54 | 2 | 32 | 116 | 90 | 176 | 4.47e-12 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01696.t1 | AT1G11530 | 67.857 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 4.81e-53 | 162 |
MS.gene01696.t1 | AT3G51030 | 41.905 | 105 | 61 | 0 | 8 | 112 | 5 | 109 | 3.78e-27 | 97.4 |
MS.gene01696.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.91e-25 | 93.6 |
MS.gene01696.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.91e-25 | 93.6 |
MS.gene01696.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.90e-25 | 93.2 |
MS.gene01696.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.90e-25 | 93.2 |
MS.gene01696.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.90e-25 | 93.2 |
MS.gene01696.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.15e-24 | 91.3 |
MS.gene01696.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.15e-24 | 91.3 |
MS.gene01696.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.15e-24 | 91.3 |
MS.gene01696.t1 | AT1G45145 | 35.849 | 106 | 68 | 0 | 7 | 112 | 3 | 108 | 2.27e-22 | 85.1 |
MS.gene01696.t1 | AT5G39950 | 36.111 | 108 | 69 | 0 | 5 | 112 | 21 | 128 | 2.43e-22 | 85.5 |
MS.gene01696.t1 | AT1G59730 | 38.835 | 103 | 63 | 0 | 11 | 113 | 23 | 125 | 4.36e-21 | 82.4 |
MS.gene01696.t1 | AT1G19730 | 40.426 | 94 | 55 | 1 | 20 | 112 | 17 | 110 | 5.19e-21 | 81.6 |
MS.gene01696.t1 | AT5G42980 | 34.906 | 106 | 69 | 0 | 8 | 113 | 4 | 109 | 1.68e-19 | 77.8 |
MS.gene01696.t1 | AT1G69880 | 29.464 | 112 | 79 | 0 | 7 | 118 | 35 | 146 | 3.97e-18 | 75.1 |
MS.gene01696.t1 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 261 | 366 | 5.48e-17 | 75.5 |
MS.gene01696.t1 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 268 | 373 | 5.87e-17 | 75.5 |
MS.gene01696.t1 | AT1G43560 | 34.066 | 91 | 58 | 2 | 29 | 117 | 74 | 164 | 1.79e-13 | 63.5 |
MS.gene01696.t1 | AT1G76760 | 33.333 | 87 | 56 | 2 | 29 | 113 | 79 | 165 | 2.44e-13 | 63.5 |
MS.gene01696.t1 | AT4G32580 | 32.143 | 84 | 57 | 0 | 29 | 112 | 19 | 102 | 2.61e-13 | 63.2 |
MS.gene01696.t1 | AT4G04950 | 34.146 | 82 | 54 | 0 | 31 | 112 | 21 | 102 | 4.28e-13 | 64.7 |
MS.gene01696.t1 | AT1G52990 | 30.208 | 96 | 66 | 1 | 22 | 116 | 218 | 313 | 4.39e-13 | 64.3 |
MS.gene01696.t1 | AT3G15360 | 36.047 | 86 | 53 | 2 | 33 | 116 | 106 | 191 | 8.33e-13 | 62.4 |
MS.gene01696.t1 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 2.48e-12 | 61.2 |
MS.gene01696.t1 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 2.48e-12 | 61.2 |
MS.gene01696.t1 | AT1G31020 | 29.730 | 111 | 76 | 1 | 5 | 113 | 45 | 155 | 5.29e-12 | 59.7 |
MS.gene01696.t1 | AT3G53220 | 25.893 | 112 | 81 | 1 | 1 | 112 | 13 | 122 | 5.53e-12 | 58.9 |
Find 23 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTCACTTTACTGCTTCA+TGG | 0.264633 | 2.4:+72654021 | MS.gene01696:CDS |
CATTGCCTTTATATCATTCC+TGG | 0.272354 | 2.4:-72655457 | None:intergenic |
GAGATTAAGAAAAGGATAGA+AGG | 0.306679 | 2.4:+72655543 | MS.gene01696:CDS |
ACAGAGAGAAACAGAAAATC+TGG | 0.372687 | 2.4:-72654098 | None:intergenic |
GAGAATTCTGATTAGAAGCT+TGG | 0.402282 | 2.4:-72653893 | None:intergenic |
GGCCACCAGGAATGATATAA+AGG | 0.411501 | 2.4:+72655452 | MS.gene01696:CDS |
TGATTGATTCTTTGCAATCA+TGG | 0.469609 | 2.4:+72653856 | MS.gene01696:CDS |
CGGTTCAGGAGGTGGCCACC+AGG | 0.479869 | 2.4:+72655439 | MS.gene01696:intron |
AGATTAAGAAAAGGATAGAA+GGG | 0.491722 | 2.4:+72655544 | MS.gene01696:CDS |
GCTGAAGGATGGTGCTCCAT+TGG | 0.519133 | 2.4:+72655494 | MS.gene01696:CDS |
AGAATCAATCACCACTACCT+TGG | 0.527546 | 2.4:-72653844 | None:intergenic |
GCAAAACAAGTCCAAGGTAG+TGG | 0.548033 | 2.4:+72653833 | MS.gene01696:CDS |
GATTGATTCTTTGCAATCAT+GGG | 0.549324 | 2.4:+72653857 | MS.gene01696:CDS |
ATCCAGAGGAGATTAAGAAA+AGG | 0.550537 | 2.4:+72655535 | MS.gene01696:CDS |
TGCCTTTATATCATTCCTGG+TGG | 0.582723 | 2.4:-72655454 | None:intergenic |
AATGGAATCATAGCCACTGA+TGG | 0.585805 | 2.4:-72654050 | None:intergenic |
GCACCAACTATCTTGTCCAA+TGG | 0.587312 | 2.4:-72655510 | None:intergenic |
TTCATGGTGCATGCCATCAG+TGG | 0.591969 | 2.4:+72654037 | MS.gene01696:CDS |
GCTCCATTGGACAAGATAGT+TGG | 0.601256 | 2.4:+72655507 | MS.gene01696:CDS |
CATAGAGCAAAACAAGTCCA+AGG | 0.613866 | 2.4:+72653827 | MS.gene01696:CDS |
TGTTGATGTTGATGAAGTCA+AGG | 0.653275 | 2.4:+72654118 | MS.gene01696:CDS |
CTAGGCAATTGATTCGCGAG+TGG | 0.669856 | 2.4:-72655577 | None:intergenic |
GATAGTTGGTGCTAATCCAG+AGG | 0.694394 | 2.4:+72655521 | MS.gene01696:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGTAGTTATACATATATAT+AGG | + | chr2.4:72655053-72655072 | MS.gene01696:intron | 15.0% |
!!! | AAATGCATTGAAATTTTTTT+GGG | + | chr2.4:72655415-72655434 | MS.gene01696:intron | 15.0% |
!!! | TAAATGCATTGAAATTTTTT+TGG | + | chr2.4:72655414-72655433 | MS.gene01696:intron | 15.0% |
!! | GACTGTTTATAAAGAATTAA+AGG | - | chr2.4:72653959-72653978 | None:intergenic | 20.0% |
!! | TACAAGAATTGAAAACAAAT+GGG | - | chr2.4:72654156-72654175 | None:intergenic | 20.0% |
!! | TATGATATATGAGAACATTA+TGG | + | chr2.4:72654328-72654347 | MS.gene01696:intron | 20.0% |
!!! | AATGCATTGAAATTTTTTTG+GGG | + | chr2.4:72655416-72655435 | MS.gene01696:intron | 20.0% |
!!! | ATTATATGACTGAATTTTGT+TGG | - | chr2.4:72654447-72654466 | None:intergenic | 20.0% |
! | AAAATAAAAACAGCAATCTC+TGG | + | chr2.4:72654668-72654687 | MS.gene01696:intron | 25.0% |
! | AGATTAAGAAAAGGATAGAA+GGG | + | chr2.4:72655544-72655563 | MS.gene01696:CDS | 25.0% |
! | CTACAAGAATTGAAAACAAA+TGG | - | chr2.4:72654157-72654176 | None:intergenic | 25.0% |
! | TATCTATATCCAACAGTAAA+AGG | - | chr2.4:72654308-72654327 | None:intergenic | 25.0% |
! | TGATGTGTTTAGATATGTAA+TGG | - | chr2.4:72654233-72654252 | None:intergenic | 25.0% |
! | TTTAGATATGTAATGGTACT+AGG | - | chr2.4:72654226-72654245 | None:intergenic | 25.0% |
!! | AAATCAAAACCTTTTACTGT+TGG | + | chr2.4:72654296-72654315 | MS.gene01696:intron | 25.0% |
!! | TGAAACAGAAAAGTTTTTGT+TGG | + | chr2.4:72655354-72655373 | MS.gene01696:intron | 25.0% |
!!! | GATTGCTGTTTTTATTTTGA+AGG | - | chr2.4:72654666-72654685 | None:intergenic | 25.0% |
ATGGTATCAGTACAGAATTT+AGG | - | chr2.4:72654716-72654735 | None:intergenic | 30.0% | |
ATTCCTCATGAACAACTAAA+TGG | + | chr2.4:72654631-72654650 | MS.gene01696:intron | 30.0% | |
ATTCTCAACAGATATAACCT+GGG | + | chr2.4:72654850-72654869 | MS.gene01696:intron | 30.0% | |
GAGATTAAGAAAAGGATAGA+AGG | + | chr2.4:72655543-72655562 | MS.gene01696:CDS | 30.0% | |
GGTTTAATATTGTGTACTGA+TGG | + | chr2.4:72655387-72655406 | MS.gene01696:intron | 30.0% | |
TCAATGCATGAAAATAAGAC+AGG | - | chr2.4:72655337-72655356 | None:intergenic | 30.0% | |
TCAGTAAACATTTGACAAGA+CGG | - | chr2.4:72655200-72655219 | None:intergenic | 30.0% | |
TCTAATCACCATAATGATGT+CGG | - | chr2.4:72654509-72654528 | None:intergenic | 30.0% | |
TGGTATCAGTACAGAATTTA+GGG | - | chr2.4:72654715-72654734 | None:intergenic | 30.0% | |
! | ACATTGAAACTTTGACTTAC+AGG | - | chr2.4:72653918-72653937 | None:intergenic | 30.0% |
! | ATTTGAAATCTGGCTTAAAG+GGG | + | chr2.4:72654883-72654902 | MS.gene01696:intron | 30.0% |
! | GAGGAATATTTAAAACGAGA+CGG | - | chr2.4:72654618-72654637 | None:intergenic | 30.0% |
! | GATTGATTCTTTGCAATCAT+GGG | + | chr2.4:72653857-72653876 | MS.gene01696:CDS | 30.0% |
! | GATTTGAAATCTGGCTTAAA+GGG | + | chr2.4:72654882-72654901 | MS.gene01696:intron | 30.0% |
! | GTTTTTGTTGGTGTGATTAA+TGG | + | chr2.4:72655366-72655385 | MS.gene01696:intron | 30.0% |
! | TGATTGATTCTTTGCAATCA+TGG | + | chr2.4:72653856-72653875 | MS.gene01696:CDS | 30.0% |
! | TTCAAGTTCCAATTTCCAAT+TGG | - | chr2.4:72654581-72654600 | None:intergenic | 30.0% |
AAAAACAGCAATCTCTGGTT+TGG | + | chr2.4:72654673-72654692 | MS.gene01696:intron | 35.0% | |
AAAGGAAAAGCTCAATTCAC+AGG | - | chr2.4:72655171-72655190 | None:intergenic | 35.0% | |
AAATGTTTACCGTTTCTACG+CGG | + | chr2.4:72655249-72655268 | MS.gene01696:intron | 35.0% | |
ACAGAGAGAAACAGAAAATC+TGG | - | chr2.4:72654101-72654120 | None:intergenic | 35.0% | |
ACTTGGGATACTGTTCTTTA+TGG | - | chr2.4:72654735-72654754 | None:intergenic | 35.0% | |
ATCCAGAGGAGATTAAGAAA+AGG | + | chr2.4:72655535-72655554 | MS.gene01696:CDS | 35.0% | |
ATGGAAATCCGACATCATTA+TGG | + | chr2.4:72654498-72654517 | MS.gene01696:intron | 35.0% | |
CAACCATTTAGTTGTTCATG+AGG | - | chr2.4:72654637-72654656 | None:intergenic | 35.0% | |
CAGTTGCAACTTGTAGTAAA+AGG | - | chr2.4:72654419-72654438 | None:intergenic | 35.0% | |
CATTGCCTTTATATCATTCC+TGG | - | chr2.4:72655460-72655479 | None:intergenic | 35.0% | |
CTATGTCGAGTCAAAATCAA+TGG | - | chr2.4:72654962-72654981 | None:intergenic | 35.0% | |
CTCTGATACCATCTAAAGAA+CGG | + | chr2.4:72654990-72655009 | MS.gene01696:intron | 35.0% | |
CTGTTGAGAATCAATTTCAG+TGG | - | chr2.4:72654841-72654860 | None:intergenic | 35.0% | |
GAGAATTCTGATTAGAAGCT+TGG | - | chr2.4:72653896-72653915 | None:intergenic | 35.0% | |
GATTCTCAACAGATATAACC+TGG | + | chr2.4:72654849-72654868 | MS.gene01696:intron | 35.0% | |
TATAGTTATCCGCGTAGAAA+CGG | - | chr2.4:72655261-72655280 | None:intergenic | 35.0% | |
TCCTTCAGCAACAAAAATGT+TGG | - | chr2.4:72655483-72655502 | None:intergenic | 35.0% | |
TCGAGTCAAAATCAATGGTA+CGG | - | chr2.4:72654957-72654976 | None:intergenic | 35.0% | |
TGCAGGTACAAAAAACCAAT+GGG | + | chr2.4:72654929-72654948 | MS.gene01696:intron | 35.0% | |
TTGCAGGTACAAAAAACCAA+TGG | + | chr2.4:72654928-72654947 | MS.gene01696:intron | 35.0% | |
TTGTTCACTTTACTGCTTCA+TGG | + | chr2.4:72654021-72654040 | MS.gene01696:CDS | 35.0% | |
TTTCTACGCGGATAACTATA+TGG | + | chr2.4:72655261-72655280 | MS.gene01696:intron | 35.0% | |
TTTGAGAGAATCTGCTTGTA+TGG | + | chr2.4:72654536-72654555 | MS.gene01696:intron | 35.0% | |
! | ACATTTTTGTTGCTGAAGGA+TGG | + | chr2.4:72655483-72655502 | MS.gene01696:CDS | 35.0% |
! | AGTGTCCATTGTAGAGTATT+CGG | + | chr2.4:72654475-72654494 | MS.gene01696:intron | 35.0% |
! | ATCCTTTTCTTAATCTCCTC+TGG | - | chr2.4:72655540-72655559 | None:intergenic | 35.0% |
! | GGATTTGAAATCTGGCTTAA+AGG | + | chr2.4:72654881-72654900 | MS.gene01696:intron | 35.0% |
! | TGTCATTGATCATGTCACTT+GGG | - | chr2.4:72654751-72654770 | None:intergenic | 35.0% |
! | TGTTGATGTTGATGAAGTCA+AGG | + | chr2.4:72654118-72654137 | MS.gene01696:CDS | 35.0% |
! | TTATGGTGCCAATTGGAAAT+TGG | + | chr2.4:72654570-72654589 | MS.gene01696:intron | 35.0% |
!! | AGCATGATGGATTTGAAATC+TGG | + | chr2.4:72654873-72654892 | MS.gene01696:intron | 35.0% |
!! | CAATCTGTTTCTGAGCATTA+GGG | - | chr2.4:72655137-72655156 | None:intergenic | 35.0% |
!! | CAGTCTTCAAATTGATTTGC+TGG | + | chr2.4:72653974-72653993 | MS.gene01696:intron | 35.0% |
!! | GGAACTTGAATTTTAGAGAG+AGG | + | chr2.4:72654591-72654610 | MS.gene01696:intron | 35.0% |
!!! | GCATTGAAATTTTTTTGGGG+CGG | + | chr2.4:72655419-72655438 | MS.gene01696:intron | 35.0% |
AATGCTCAGAAACAGATTGC+TGG | + | chr2.4:72655138-72655157 | MS.gene01696:intron | 40.0% | |
AATGGAATCATAGCCACTGA+TGG | - | chr2.4:72654053-72654072 | None:intergenic | 40.0% | |
AGAATCAATCACCACTACCT+TGG | - | chr2.4:72653847-72653866 | None:intergenic | 40.0% | |
CATAGAGCAAAACAAGTCCA+AGG | + | chr2.4:72653827-72653846 | MS.gene01696:CDS | 40.0% | |
CATCTAAAGAACGGATGGAA+AGG | + | chr2.4:72654999-72655018 | MS.gene01696:intron | 40.0% | |
CTGGGTCTATTTGCATAACA+TGG | - | chr2.4:72654807-72654826 | None:intergenic | 40.0% | |
CTGTCAACTTTCTGTTTGAG+TGG | + | chr2.4:72654273-72654292 | MS.gene01696:intron | 40.0% | |
CTGTCATTGATCATGTCACT+TGG | - | chr2.4:72654752-72654771 | None:intergenic | 40.0% | |
CTTTCCATCCGTTCTTTAGA+TGG | - | chr2.4:72655001-72655020 | None:intergenic | 40.0% | |
GACGCGAATTCTTCGAAAAA+TGG | - | chr2.4:72654071-72654090 | None:intergenic | 40.0% | |
GATACCATCTAAAGAACGGA+TGG | + | chr2.4:72654994-72655013 | MS.gene01696:intron | 40.0% | |
TAACTTATGAGACGTCTTGC+AGG | + | chr2.4:72654912-72654931 | MS.gene01696:intron | 40.0% | |
TCCATCCGAATACTCTACAA+TGG | - | chr2.4:72654483-72654502 | None:intergenic | 40.0% | |
TGCCTTTATATCATTCCTGG+TGG | - | chr2.4:72655457-72655476 | None:intergenic | 40.0% | |
! | GCCAACATTTTTGTTGCTGA+AGG | + | chr2.4:72655479-72655498 | MS.gene01696:CDS | 40.0% |
! | TCCATTGTAGAGTATTCGGA+TGG | + | chr2.4:72654479-72654498 | MS.gene01696:intron | 40.0% |
!! | GCAATCTGTTTCTGAGCATT+AGG | - | chr2.4:72655138-72655157 | None:intergenic | 40.0% |
!!! | AAATTTTTTTGGGGCGGTTC+AGG | + | chr2.4:72655425-72655444 | MS.gene01696:intron | 40.0% |
!!! | CTTGGACTTGTTTTGCTCTA+TGG | - | chr2.4:72653829-72653848 | None:intergenic | 40.0% |
AGAATCTGCTTGTATGGCGA+AGG | + | chr2.4:72654542-72654561 | MS.gene01696:intron | 45.0% | |
ATCAATGGTACGGATCCCAT+TGG | - | chr2.4:72654947-72654966 | None:intergenic | 45.0% | |
CGATGTCAAAAGAGTAGCTG+AGG | - | chr2.4:72654781-72654800 | None:intergenic | 45.0% | |
GCAAAACAAGTCCAAGGTAG+TGG | + | chr2.4:72653833-72653852 | MS.gene01696:CDS | 45.0% | |
GCAAATAGACCCAGTCTTCA+CGG | + | chr2.4:72654813-72654832 | MS.gene01696:intron | 45.0% | |
GCACCAACTATCTTGTCCAA+TGG | - | chr2.4:72655513-72655532 | None:intergenic | 45.0% | |
GCTCCATTGGACAAGATAGT+TGG | + | chr2.4:72655507-72655526 | MS.gene01696:CDS | 45.0% | |
GGCCACCAGGAATGATATAA+AGG | + | chr2.4:72655452-72655471 | MS.gene01696:CDS | 45.0% | |
TTCAAATCCATCATGCTCCC+AGG | - | chr2.4:72654870-72654889 | None:intergenic | 45.0% | |
TTGACAAGACGGTCGCTAAA+AGG | - | chr2.4:72655189-72655208 | None:intergenic | 45.0% | |
! | GATATAACCTGGGAGCATGA+TGG | + | chr2.4:72654860-72654879 | MS.gene01696:intron | 45.0% |
! | GGTTTGCTTATGGTGCCAAT+TGG | + | chr2.4:72654563-72654582 | MS.gene01696:intron | 45.0% |
! | GTATGGCGAAGGTTTGCTTA+TGG | + | chr2.4:72654553-72654572 | MS.gene01696:intron | 45.0% |
!! | GATAGTTGGTGCTAATCCAG+AGG | + | chr2.4:72655521-72655540 | MS.gene01696:CDS | 45.0% |
ATGTAGCCCACCACACTTAG+TGG | + | chr2.4:72654364-72654383 | MS.gene01696:intron | 50.0% | |
CTTGTCCCACTAAGTGTGGT+GGG | - | chr2.4:72654373-72654392 | None:intergenic | 50.0% | |
TGTAGCCCACCACACTTAGT+GGG | + | chr2.4:72654365-72654384 | MS.gene01696:intron | 50.0% | |
TTCATGGTGCATGCCATCAG+TGG | + | chr2.4:72654037-72654056 | MS.gene01696:CDS | 50.0% | |
! | AAGCCTTGTCCCACTAAGTG+TGG | - | chr2.4:72654377-72654396 | None:intergenic | 50.0% |
!! | CTAGGCAATTGATTCGCGAG+TGG | - | chr2.4:72655580-72655599 | None:intergenic | 50.0% |
!!! | TTTTTTTGGGGCGGTTCAGG+AGG | + | chr2.4:72655428-72655447 | MS.gene01696:intron | 50.0% |
CCACCACACTTAGTGGGACA+AGG | + | chr2.4:72654371-72654390 | MS.gene01696:intron | 55.0% | |
CCTTGTCCCACTAAGTGTGG+TGG | - | chr2.4:72654374-72654393 | None:intergenic | 55.0% | |
GCTGAAGGATGGTGCTCCAT+TGG | + | chr2.4:72655494-72655513 | MS.gene01696:CDS | 55.0% | |
TCAGTGGAGCCGTGAAGACT+GGG | - | chr2.4:72654825-72654844 | None:intergenic | 55.0% | |
TTCAGTGGAGCCGTGAAGAC+TGG | - | chr2.4:72654826-72654845 | None:intergenic | 55.0% | |
!!! | TTTTGGGGCGGTTCAGGAGG+TGG | + | chr2.4:72655431-72655450 | MS.gene01696:intron | 60.0% |
CGGTTCAGGAGGTGGCCACC+AGG | + | chr2.4:72655439-72655458 | MS.gene01696:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 72653819 | 72655599 | 72653819 | ID=MS.gene01696 |
chr2.4 | mRNA | 72653819 | 72655599 | 72653819 | ID=MS.gene01696.t1;Parent=MS.gene01696 |
chr2.4 | exon | 72653819 | 72653917 | 72653819 | ID=MS.gene01696.t1.exon1;Parent=MS.gene01696.t1 |
chr2.4 | CDS | 72653819 | 72653917 | 72653819 | ID=cds.MS.gene01696.t1;Parent=MS.gene01696.t1 |
chr2.4 | exon | 72654017 | 72654139 | 72654017 | ID=MS.gene01696.t1.exon2;Parent=MS.gene01696.t1 |
chr2.4 | CDS | 72654017 | 72654139 | 72654017 | ID=cds.MS.gene01696.t1;Parent=MS.gene01696.t1 |
chr2.4 | exon | 72655447 | 72655599 | 72655447 | ID=MS.gene01696.t1.exon3;Parent=MS.gene01696.t1 |
chr2.4 | CDS | 72655447 | 72655599 | 72655447 | ID=cds.MS.gene01696.t1;Parent=MS.gene01696.t1 |
Gene Sequence |
Protein sequence |