AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018209

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018209.t1 MTR_6g016470 95.490 1020 45 1 1 1019 1 1020 0.0 1964
MS.gene018209.t1 MTR_7g095710 68.737 950 283 6 72 1013 104 1047 0.0 1262
MS.gene018209.t1 MTR_8g013780 91.944 571 46 0 448 1018 1 571 0.0 1080
MS.gene018209.t1 MTR_2g038310 56.231 971 393 10 53 1010 123 1074 0.0 1028
MS.gene018209.t1 MTR_4g008170 53.565 1038 418 13 20 1010 66 1086 0.0 1025
MS.gene018209.t1 MTR_4g008170 53.009 1047 417 15 20 1010 66 1093 0.0 1007
MS.gene018209.t1 MTR_2g038310 56.468 889 355 10 53 928 123 992 0.0 926
MS.gene018209.t1 MTR_4g008650 45.266 1014 502 15 6 1005 37 1011 0.0 852
MS.gene018209.t1 MTR_8g090125 47.904 954 452 17 70 1008 49 972 0.0 847
MS.gene018209.t1 MTR_8g013810 90.611 458 36 2 1 458 1 451 0.0 820
MS.gene018209.t1 MTR_4g096990 47.912 958 464 14 57 1005 81 1012 0.0 810
MS.gene018209.t1 MTR_5g015590 48.309 946 453 15 70 1005 95 1014 0.0 803
MS.gene018209.t1 MTR_0005s0140 45.768 957 476 15 70 1011 11 939 0.0 800
MS.gene018209.t1 MTR_4g043690 45.768 957 476 15 70 1011 96 1024 0.0 800
MS.gene018209.t1 MTR_3g103070 47.441 938 454 12 80 1005 106 1016 0.0 797
MS.gene018209.t1 MTR_3g103070 48.727 864 407 11 154 1005 1 840 0.0 752
MS.gene018209.t1 MTR_5g015590 48.792 869 409 15 70 928 95 937 0.0 735
MS.gene018209.t1 MTR_2g105830 53.825 732 321 10 70 795 135 855 0.0 731
MS.gene018209.t1 MTR_8g446010 41.026 975 525 16 45 1005 29 967 0.0 691
MS.gene018209.t1 MTR_8g045070 40.308 975 509 16 45 1005 29 944 0.0 676
MS.gene018209.t1 MTR_4g008650 43.541 836 423 14 6 831 37 833 0.0 657
MS.gene018209.t1 MTR_5g015590 47.656 768 370 14 70 831 95 836 0.0 617
MS.gene018209.t1 MTR_5g015590 46.067 712 352 14 70 775 95 780 1.76e-176 534
MS.gene018209.t1 MTR_5g097270 33.599 878 519 16 152 1003 165 1004 1.32e-140 448
MS.gene018209.t1 MTR_4g014480 30.413 993 596 21 39 1005 26 949 1.80e-122 398
MS.gene018209.t1 MTR_7g100110 32.534 876 471 24 102 886 38 884 4.24e-109 364
MS.gene018209.t1 MTR_8g027160 30.920 870 487 24 107 887 25 869 5.68e-95 322
MS.gene018209.t1 MTR_8g027160 30.840 869 487 24 107 886 25 868 7.11e-94 322
MS.gene018209.t1 MTR_2g105690 61.607 224 81 1 791 1009 19 242 1.39e-92 295
MS.gene018209.t1 MTR_3g103270 29.554 829 494 19 120 886 60 860 4.23e-84 294
MS.gene018209.t1 MTR_8g027160 29.762 756 418 23 107 774 25 755 2.40e-68 244
MS.gene018209.t1 MTR_8g027160 29.630 756 419 23 107 774 25 755 8.07e-68 243
MS.gene018209.t1 MTR_4g116950 23.207 711 433 22 123 817 44 657 9.63e-45 176
MS.gene018209.t1 MTR_4g127710 23.940 731 453 23 95 817 24 659 1.84e-44 175
MS.gene018209.t1 MTR_4g127710 23.940 731 453 23 95 817 24 659 2.23e-44 174
MS.gene018209.t1 MTR_8g089870 24.934 762 462 23 154 882 69 753 3.16e-44 174
MS.gene018209.t1 MTR_7g117500 23.491 762 478 23 95 848 28 692 5.66e-43 170
MS.gene018209.t1 MTR_2g104860 23.810 609 381 14 219 825 134 661 6.89e-42 166
MS.gene018209.t1 MTR_2g449840 22.082 711 456 18 123 825 44 664 1.36e-41 166
MS.gene018209.t1 MTR_6g011310 24.026 616 371 19 219 825 138 665 6.20e-41 164
MS.gene018209.t1 MTR_2g036650 23.754 602 376 12 219 817 141 662 7.75e-41 163
MS.gene018209.t1 MTR_1g009760 21.893 708 456 17 118 817 41 659 3.93e-40 160
MS.gene018209.t1 MTR_3g108800 22.709 731 462 20 95 817 20 655 4.42e-40 161
MS.gene018209.t1 MTR_1g009760 21.893 708 456 17 118 817 38 656 5.05e-40 160
MS.gene018209.t1 MTR_3g108800 22.709 731 462 20 95 817 21 656 5.91e-40 160
MS.gene018209.t1 MTR_7g117500 22.686 767 467 25 95 848 28 681 1.50e-39 159
MS.gene018209.t1 MTR_4g107500 23.539 616 374 19 219 825 140 667 4.42e-39 157
MS.gene018209.t1 MTR_6g011310 23.701 616 368 19 219 825 138 660 5.17e-39 157
MS.gene018209.t1 MTR_1g009720 22.531 719 438 22 118 817 38 656 9.09e-39 157
MS.gene018209.t1 MTR_8g063880 23.115 610 369 16 219 817 136 656 1.65e-38 156
MS.gene018209.t1 MTR_8g006790 22.623 610 386 14 219 825 144 670 5.52e-36 148
MS.gene018209.t1 MTR_5g052190 80.000 80 16 0 521 600 279 358 1.82e-31 133
MS.gene018209.t1 MTR_4g094695 24.315 584 328 22 244 822 465 939 2.76e-23 107
MS.gene018209.t1 MTR_3g097560 23.133 817 473 30 52 780 94 843 4.32e-22 103
MS.gene018209.t1 MTR_2g090610 21.231 796 457 22 212 863 98 867 2.60e-19 94.7
MS.gene018209.t1 MTR_2g090610 21.231 796 457 22 212 863 98 867 3.85e-19 94.0
MS.gene018209.t1 MTR_2g035840 29.808 208 114 3 615 822 763 938 2.17e-18 91.7
MS.gene018209.t1 MTR_5g010420 32.544 169 81 4 631 799 771 906 6.68e-17 86.7
MS.gene018209.t1 MTR_8g079250 28.962 183 98 3 640 822 788 938 1.20e-16 85.9
MS.gene018209.t1 MTR_8g012390 29.911 224 113 6 618 840 742 922 1.81e-16 85.1
MS.gene018209.t1 MTR_4g112430 22.881 472 267 18 501 890 555 1011 1.42e-15 82.4
MS.gene018209.t1 MTR_4g008640 40.196 102 54 1 580 681 76 170 1.55e-14 73.2
MS.gene018209.t1 MTR_5g037210 20.504 834 440 32 199 831 107 918 4.13e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018209.t1 AT3G22910 67.257 1017 305 11 12 1018 17 1015 0.0 1301
MS.gene018209.t1 AT3G63380 65.575 1008 310 9 27 1014 25 1015 0.0 1277
MS.gene018209.t1 AT4G29900 56.844 957 397 8 70 1018 114 1062 0.0 1061
MS.gene018209.t1 AT4G29900 56.844 957 397 8 70 1018 114 1062 0.0 1061
MS.gene018209.t1 AT5G57110 56.426 957 399 7 70 1018 114 1060 0.0 1051
MS.gene018209.t1 AT5G57110 56.426 957 399 7 70 1018 114 1060 0.0 1051
MS.gene018209.t1 AT5G57110 56.426 957 399 7 70 1018 114 1060 0.0 1051
MS.gene018209.t1 AT3G21180 56.453 953 394 11 69 1010 127 1069 0.0 1018
MS.gene018209.t1 AT3G57330 47.248 963 471 12 57 1012 80 1012 0.0 863
MS.gene018209.t1 AT3G57330 47.490 956 465 12 57 1005 25 950 0.0 862
MS.gene018209.t1 AT2G41560 44.739 1017 514 17 6 1012 37 1015 0.0 845
MS.gene018209.t1 AT2G41560 46.448 943 465 13 80 1012 1 913 0.0 830
MS.gene018209.t1 AT2G41560 46.448 943 465 13 80 1012 1 913 0.0 830
MS.gene018209.t1 AT2G41560 46.448 943 465 13 80 1012 1 913 0.0 830
MS.gene018209.t1 AT1G27770 46.624 948 468 12 70 1005 33 954 0.0 798
MS.gene018209.t1 AT1G27770 46.624 948 468 12 70 1005 96 1017 0.0 798
MS.gene018209.t1 AT1G27770 46.624 948 468 12 70 1005 96 1017 0.0 798
MS.gene018209.t1 AT4G37640 46.930 961 474 13 56 1005 79 1014 0.0 789
MS.gene018209.t1 AT2G22950 47.357 946 464 13 70 1005 94 1015 0.0 783
MS.gene018209.t1 AT5G53010 36.632 950 520 18 70 993 140 1033 1.35e-173 535
MS.gene018209.t1 AT5G53010 37.054 645 387 9 70 713 140 766 7.92e-122 391
MS.gene018209.t1 AT1G27770 40.702 570 313 9 70 632 96 647 5.98e-116 380
MS.gene018209.t1 AT1G27770 56.958 309 128 2 702 1005 635 943 2.03e-108 360
MS.gene018209.t1 AT1G07670 32.976 840 472 23 118 886 49 868 1.96e-109 365
MS.gene018209.t1 AT1G07670 32.976 840 472 23 118 886 49 868 1.96e-109 365
MS.gene018209.t1 AT1G07810 33.020 851 474 24 107 886 43 868 2.71e-109 365
MS.gene018209.t1 AT4G00900 33.217 858 465 24 95 869 14 846 1.20e-102 346
MS.gene018209.t1 AT4G00900 33.217 858 465 24 95 869 14 846 1.20e-102 346
MS.gene018209.t1 AT1G10130 30.241 830 480 20 123 886 32 828 4.73e-84 293
MS.gene018209.t1 AT2G24520 24.283 593 355 14 233 817 193 699 2.46e-43 171
MS.gene018209.t1 AT2G24520 24.278 589 360 13 233 817 130 636 2.80e-43 171
MS.gene018209.t1 AT2G24520 24.278 589 360 13 233 817 130 636 2.80e-43 171
MS.gene018209.t1 AT1G80660 24.675 616 367 20 219 825 139 666 2.06e-42 168
MS.gene018209.t1 AT1G80660 24.675 616 367 20 219 825 139 666 2.14e-42 168
MS.gene018209.t1 AT1G80660 24.675 616 367 20 219 825 10 537 2.40e-42 167
MS.gene018209.t1 AT1G80660 24.513 616 368 19 219 825 139 666 2.88e-42 168
MS.gene018209.t1 AT3G42640 22.876 765 464 25 79 825 8 664 3.51e-42 167
MS.gene018209.t1 AT3G60330 23.471 605 368 16 220 817 138 654 6.64e-41 164
MS.gene018209.t1 AT3G60330 23.471 605 368 16 220 817 138 654 6.64e-41 164
MS.gene018209.t1 AT3G47950 23.339 617 374 17 219 825 142 669 8.68e-41 163
MS.gene018209.t1 AT3G47950 23.339 617 374 17 219 825 142 669 8.68e-41 163
MS.gene018209.t1 AT3G60330 23.306 605 369 16 220 817 138 654 1.48e-40 162
MS.gene018209.t1 AT3G60330 23.306 605 369 16 220 817 138 654 1.48e-40 162
MS.gene018209.t1 AT2G07560 22.402 741 462 23 123 848 44 686 1.06e-39 160
MS.gene018209.t1 AT1G17260 25.042 595 347 14 233 817 156 661 3.02e-39 158
MS.gene018209.t1 AT4G30190 23.028 634 401 16 219 848 134 684 3.03e-39 158
MS.gene018209.t1 AT2G18960 23.186 634 400 17 219 848 70 620 7.87e-39 157
MS.gene018209.t1 AT2G18960 23.186 634 400 17 219 848 70 620 7.87e-39 157
MS.gene018209.t1 AT2G18960 23.186 634 400 17 219 848 134 684 8.12e-39 157
MS.gene018209.t1 AT5G62670 22.989 609 386 14 219 825 138 665 9.33e-39 157
MS.gene018209.t1 AT5G57350 22.517 604 380 13 219 817 135 655 2.02e-38 155
MS.gene018209.t1 AT5G57350 22.517 604 380 13 219 817 135 655 2.02e-38 155
MS.gene018209.t1 AT5G57350 22.517 604 380 13 219 817 135 655 2.02e-38 155
MS.gene018209.t1 AT4G30190 21.922 666 402 19 219 848 134 717 3.76e-35 145
MS.gene018209.t1 AT2G24520 23.448 435 276 8 386 817 13 393 5.20e-29 124
MS.gene018209.t1 AT5G57350 23.218 435 277 9 386 817 13 393 5.73e-28 121
MS.gene018209.t1 AT5G23630 22.510 773 452 26 74 767 125 829 1.29e-21 102
MS.gene018209.t1 AT1G63440 30.601 183 95 2 640 822 787 937 5.64e-19 93.6
MS.gene018209.t1 AT5G44790 31.658 199 103 4 624 822 783 948 4.00e-18 90.5
MS.gene018209.t1 AT5G44240 21.411 794 458 25 212 863 98 867 1.01e-17 89.4
MS.gene018209.t1 AT5G44240 21.411 794 458 25 212 863 130 899 1.49e-17 89.0
MS.gene018209.t1 AT4G11730 21.598 338 223 11 123 455 45 345 1.42e-15 82.0
MS.gene018209.t1 AT4G30110 27.830 212 113 5 637 848 508 679 1.42e-14 79.0
MS.gene018209.t1 AT4G30110 27.830 212 113 5 637 848 508 679 1.42e-14 79.0

Find 153 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAGCAGTCCAATTATTA+TGG 0.186247 6.3:-11929523 MS.gene018209:CDS
TCATGAAAATCTATTGTTCT+AGG 0.205768 6.3:-11932189 MS.gene018209:CDS
TGAGTTTAATGCAAGGAAAT+TGG 0.225227 6.3:-11929240 MS.gene018209:CDS
TCAAATTCACCCATAATAAT+TGG 0.237216 6.3:+11929513 None:intergenic
ATTATGGGTGAATTTGATTA+TGG 0.241738 6.3:-11929507 MS.gene018209:CDS
GGTGCTGTTTCTTGGCCTAT+TGG 0.270147 6.3:-11929059 MS.gene018209:CDS
GTTCAATGTTTAAAACAAAA+AGG 0.271876 6.3:-11929824 MS.gene018209:CDS
AATACTATCTTGGGCTGTTT+TGG 0.272622 6.3:-11930619 MS.gene018209:CDS
ACTCTCTGCATGTGAGACTA+TGG 0.284040 6.3:-11931015 MS.gene018209:CDS
AATAATTGGACTGCTGTTAA+TGG 0.289253 6.3:+11929527 None:intergenic
TCCATTTGACAAACTTCTAA+TGG 0.296674 6.3:-11929846 MS.gene018209:CDS
TTTGGAATTGAAAATGGATA+TGG 0.303373 6.3:-11930601 MS.gene018209:CDS
TCCCATTGAAAGACCGATAT+CGG 0.305491 6.3:+11929745 None:intergenic
TGTAACTATTCTAATCCTTT+TGG 0.306575 6.3:-11931840 MS.gene018209:CDS
GAGTTAACAAAATTACTATT+TGG 0.307036 6.3:+11929354 None:intergenic
CTTAAAACCAACATTGAGTT+TGG 0.307048 6.3:-11931986 MS.gene018209:CDS
CAATGACATTCAAATTGATT+TGG 0.308945 6.3:-11931654 MS.gene018209:CDS
AGATGAAGGTGACGAAGTTT+TGG 0.311024 6.3:-11930806 MS.gene018209:CDS
TCGAAGTGGTCGTCGGTTAA+AGG 0.314231 6.3:-11931630 MS.gene018209:CDS
GTTTCATCTGTGTCCTCATT+AGG 0.321734 6.3:+11929956 None:intergenic
TGGATTATTTGTATTGGTTT+TGG 0.330074 6.3:-11929080 MS.gene018209:CDS
GTTAGGACTTGTCGGCATTA+AGG 0.342087 6.3:-11930235 MS.gene018209:CDS
GATGTGATGAATGCAATTAT+TGG 0.346408 6.3:-11931161 MS.gene018209:CDS
CACATAATGTTAGTTATAAG+AGG 0.361954 6.3:+11929404 None:intergenic
CTGGTACAGAAAGGTTGAAT+TGG 0.367852 6.3:-11929109 MS.gene018209:CDS
GGCCATGTAGTTGCTGTAAC+AGG 0.373182 6.3:-11929803 MS.gene018209:CDS
GCTACACTTTCACTTGGCTT+TGG 0.378331 6.3:-11931812 MS.gene018209:CDS
GACAACGGTTTAACATTGTT+AGG 0.382959 6.3:-11930252 MS.gene018209:CDS
AAAGGTTGAATTGGAGAGAA+TGG 0.383579 6.3:-11929100 MS.gene018209:CDS
AACAGCAGTCCAATTATTAT+GGG 0.386925 6.3:-11929522 MS.gene018209:CDS
AATTTGATTATGGATACATT+AGG 0.389466 6.3:-11929497 MS.gene018209:CDS
GTGAATGTCAAAATGATTAC+AGG 0.392744 6.3:-11930159 MS.gene018209:intron
GCTGATGGATTGTTCGTAGA+TGG 0.395877 6.3:-11931545 MS.gene018209:CDS
GTTATCGGTCTTTGTGTTCC+CGG 0.400380 6.3:+11931223 None:intergenic
GATGTTGTTTGTTTGAAGAT+TGG 0.403237 6.3:-11931581 MS.gene018209:CDS
TCAAGATACTATGATGGTTA+TGG 0.406417 6.3:-11930432 MS.gene018209:CDS
GCAATTAGGAAACAAGTGTT+TGG 0.412156 6.3:-11931929 MS.gene018209:CDS
AGAGGCTTTGTTCTACCAAC+TGG 0.413768 6.3:+11929422 None:intergenic
ATCGATCGGAAAAGTTGGTT+TGG 0.416711 6.3:-11931291 MS.gene018209:CDS
ACCATTAGAAGTTTGTCAAA+TGG 0.418812 6.3:+11929845 None:intergenic
AGAGAATGGATTATTTGTAT+TGG 0.428342 6.3:-11929086 MS.gene018209:CDS
CAAAATCATGGTGGAGTTGA+AGG 0.433331 6.3:-11932022 MS.gene018209:CDS
CATGAAAATCTATTGTTCTA+GGG 0.434432 6.3:-11932188 MS.gene018209:CDS
TATGAGAGTTTCTTGATCAA+TGG 0.439612 6.3:+11932078 None:intergenic
GTTCTTCAATTGATCAAAGA+AGG 0.439661 6.3:-11930732 MS.gene018209:CDS
GAACTCTCTAACTCCGTTAT+CGG 0.441166 6.3:+11931208 None:intergenic
ACTATTTGCACCGACAAAAC+AGG 0.445850 6.3:-11930981 MS.gene018209:intron
AAAATGCTTGTTACATCAGT+TGG 0.446411 6.3:-11931407 MS.gene018209:CDS
TGAAAGAATTATTCAAGGTA+TGG 0.447097 6.3:-11930370 MS.gene018209:CDS
TCAATATTTGATATTGTTGT+TGG 0.451599 6.3:-11931605 MS.gene018209:CDS
AGCCGATATCGGTCTTTCAA+TGG 0.458474 6.3:-11929747 MS.gene018209:CDS
GTTGATGAATCGAGCATGAC+AGG 0.461070 6.3:-11931509 MS.gene018209:CDS
AGTGTCAGTGTCACAGCTAA+TGG 0.470542 6.3:+11931086 None:intergenic
TCCACTGCCGTCTTCACTCC+CGG 0.473789 6.3:+11930201 None:intergenic
TGCATTGCTTTAGCGTATAC+CGG 0.474401 6.3:-11930330 MS.gene018209:CDS
CATTAAGGATCCATGTCGTC+CGG 0.475716 6.3:-11930220 MS.gene018209:CDS
TATGGATACATTAGGTGCAT+TGG 0.476382 6.3:-11929489 MS.gene018209:CDS
GTTTGTGCTACACTTTCACT+TGG 0.479286 6.3:-11931818 MS.gene018209:CDS
TTCGTAGCCGCGGTTTCAGC+CGG 0.480048 6.3:-11929557 MS.gene018209:CDS
GGTCTTTCAATGGGAATTCA+AGG 0.480265 6.3:-11929737 MS.gene018209:CDS
GGTGTTCACAAATCGAAATC+AGG 0.481696 6.3:-11930687 MS.gene018209:CDS
AAGTTTGAAAGAATTATTCA+AGG 0.483322 6.3:-11930375 MS.gene018209:CDS
TTGATCAATTGAAGAACAGA+TGG 0.483421 6.3:+11930738 None:intergenic
GCCGATATCGGTCTTTCAAT+GGG 0.484090 6.3:-11929746 MS.gene018209:CDS
GGAGTTGCTCTCAATACAAC+TGG 0.484303 6.3:-11930711 MS.gene018209:CDS
GGGAACACAAAGACCGATAA+CGG 0.488933 6.3:-11931221 MS.gene018209:CDS
TTATACATTAATTCCTTGGT+AGG 0.490553 6.3:+11929449 None:intergenic
TTAACATTGTTAGGACTTGT+CGG 0.494459 6.3:-11930243 MS.gene018209:CDS
AACTTCACAACAAAACCAAT+AGG 0.494710 6.3:+11929044 None:intergenic
CTATTGATTCGATATTTCAC+CGG 0.496822 6.3:-11931242 MS.gene018209:CDS
ATTGAGACACTTCAAAATCA+TGG 0.498675 6.3:-11932034 MS.gene018209:CDS
TCACAAATCGAAATCAGGTT+CGG 0.498715 6.3:-11930682 MS.gene018209:CDS
ACAGATGAAACCGTGGTTGA+AGG 0.498794 6.3:-11929944 MS.gene018209:CDS
GGGAATTATTGGTGTGACAT+TGG 0.499595 6.3:-11929171 MS.gene018209:CDS
TTGTTAACTCTTCAATTCAA+AGG 0.499732 6.3:-11929341 MS.gene018209:CDS
TTTGATACCAAACTCAATGT+TGG 0.505557 6.3:+11931979 None:intergenic
TTGGCTTGGTCTAGAACCAT+TGG 0.506606 6.3:-11930787 MS.gene018209:CDS
ACATCATCGATCGGAAAAGT+TGG 0.507081 6.3:-11931296 MS.gene018209:CDS
TGCTGTTAATGGTACTTCAC+CGG 0.515446 6.3:+11929538 None:intergenic
AGAAATGGTTTATCTGAGAC+AGG 0.517777 6.3:+11929017 None:intergenic
ATCAAAGAAGGTTGGTATGA+TGG 0.518871 6.3:-11931773 MS.gene018209:CDS
AAGAAACACCTTTGCAAACA+AGG 0.519339 6.3:-11931331 MS.gene018209:CDS
AAATCAACCACGGTAAAAGA+TGG 0.520015 6.3:+11932121 None:intergenic
TGGAATTCTCCGACCTAATG+AGG 0.520945 6.3:-11929969 MS.gene018209:CDS
GCATTGAAAGAAGCCGATAT+CGG 0.523732 6.3:-11929758 MS.gene018209:CDS
ATCACACACACAACAAAAGA+TGG 0.526243 6.3:-11932222 MS.gene018209:CDS
AGAAGTTTGCTGGTACAGAA+AGG 0.529712 6.3:-11929118 MS.gene018209:CDS
GTTGTTGTTGCAATTCCTGA+GGG 0.531565 6.3:-11931113 MS.gene018209:CDS
CTCTTATAACTAACATTATG+TGG 0.531696 6.3:-11929403 MS.gene018209:CDS
AAATTGTTCGCCTTCAACCA+CGG 0.532190 6.3:+11929934 None:intergenic
ATATCGGCTTCTTTCAATGC+CGG 0.532373 6.3:+11929761 None:intergenic
AAAGTGTAGCACAAACCAAA+AGG 0.534473 6.3:+11931825 None:intergenic
GAATATGCACCCTCTTCCAA+TGG 0.534520 6.3:+11930771 None:intergenic
CAGTTGGTATGAACACAACA+TGG 0.534762 6.3:-11931391 MS.gene018209:CDS
AACTCAAAGAAGAAAAGAAG+TGG 0.537966 6.3:-11930534 MS.gene018209:CDS
AACTCTTCAATTCAAAGGTG+AGG 0.539506 6.3:-11929336 MS.gene018209:CDS
CTCTCTGCATGTGAGACTAT+GGG 0.539612 6.3:-11931014 MS.gene018209:CDS
GTCTTCACTCCCGGACGACA+TGG 0.539844 6.3:+11930210 None:intergenic
ATTGGTGCTTCAAGTTGTGA+TGG 0.541508 6.3:-11929153 MS.gene018209:CDS
GTAGTTGCTGTAACAGGAGA+TGG 0.541746 6.3:-11929797 MS.gene018209:CDS
GCAACAAAACTATTGTACAT+TGG 0.542468 6.3:-11930488 MS.gene018209:CDS
ACAGCTAATGGCAAACCCTC+AGG 0.545616 6.3:+11931098 None:intergenic
TGGTCTAGAACCATTGGAAG+AGG 0.546031 6.3:-11930781 MS.gene018209:CDS
CAAATTGATTTGGTTCGAAG+TGG 0.549306 6.3:-11931644 MS.gene018209:CDS
ATTTGGTTCGAAGTGGTCGT+CGG 0.551230 6.3:-11931637 MS.gene018209:CDS
TTATTCAACCTTGTTTGCAA+AGG 0.551708 6.3:+11931323 None:intergenic
GAAGATTGGTGATCAAGTAC+CGG 0.553519 6.3:-11931567 MS.gene018209:CDS
TCCGGGAGTGAAGACGGCAG+TGG 0.553901 6.3:-11930202 MS.gene018209:CDS
ATGTCGTCCGGGAGTGAAGA+CGG 0.554212 6.3:-11930208 MS.gene018209:CDS
AACATGGAATCAAAGAAGGT+TGG 0.557290 6.3:-11931781 MS.gene018209:CDS
AAGCAACATGGAATCAAAGA+AGG 0.557387 6.3:-11931785 MS.gene018209:CDS
TTGGAAAGGAGCAGCAGAGA+TGG 0.559095 6.3:-11930469 MS.gene018209:CDS
CTCCTGTTACAGCAACTACA+TGG 0.559264 6.3:+11929801 None:intergenic
GGTGATCAAGTACCGGCTGA+TGG 0.561728 6.3:-11931560 MS.gene018209:CDS
GTGGAAGCTTGCCAACATGC+CGG 0.568796 6.3:-11930183 MS.gene018209:CDS
TGTTGTTGTTGCAATTCCTG+AGG 0.573357 6.3:-11931114 MS.gene018209:CDS
ATTTCAATTAACAGTGAATG+TGG 0.574758 6.3:-11929597 MS.gene018209:CDS
AAAACTATTGTACATTGGAA+AGG 0.578639 6.3:-11930483 MS.gene018209:CDS
ATTAAGGATCCATGTCGTCC+GGG 0.583158 6.3:-11930219 MS.gene018209:CDS
AGATGGAACAAATGATGCAC+CGG 0.583689 6.3:-11929780 MS.gene018209:CDS
ACTCACTTTGAATCAGATGA+AGG 0.584042 6.3:-11930820 MS.gene018209:CDS
TATTGATTCGATATTTCACC+GGG 0.584900 6.3:-11931241 MS.gene018209:CDS
TCCGGAACAAAAGTTGTCGA+TGG 0.584941 6.3:-11931437 MS.gene018209:CDS
TACTTCACCGGCTGAAACCG+CGG 0.586833 6.3:+11929550 None:intergenic
TGACATTCACACCGGCATGT+TGG 0.590504 6.3:+11930172 None:intergenic
CATCTGTGTCCTCATTAGGT+CGG 0.591217 6.3:+11929960 None:intergenic
ATGTGTTCAAGATACTATGA+TGG 0.592425 6.3:-11930438 MS.gene018209:CDS
AATAAGTTAACATCATCGAT+CGG 0.606347 6.3:-11931305 MS.gene018209:CDS
AAAGAAGGTTGGTATGATGG+TGG 0.609959 6.3:-11931770 MS.gene018209:CDS
GGAGTTGAAAACGAAGTGCT+AGG 0.614589 6.3:-11930309 MS.gene018209:CDS
AAGATGTTGGTTAAAGACAA+CGG 0.619209 6.3:-11930267 MS.gene018209:CDS
TCTACGAACAATCCATCAGC+CGG 0.619777 6.3:+11931548 None:intergenic
ATATTCAATGAAGAAAATGA+TGG 0.622337 6.3:-11931060 MS.gene018209:CDS
AGTAGACGACAACAAGATGT+TGG 0.628539 6.3:-11930280 MS.gene018209:CDS
TGTTATCAATTTCGTAGCCG+CGG 0.628690 6.3:-11929567 MS.gene018209:CDS
TGTTTAATGAGTTTAATGCA+AGG 0.630387 6.3:-11929247 MS.gene018209:CDS
GGCTTTGGTATCAAGCAACA+TGG 0.632329 6.3:-11931797 MS.gene018209:CDS
GGTCTAGAACCATTGGAAGA+GGG 0.634948 6.3:-11930780 MS.gene018209:CDS
AAAGCTATAGCATTTGAATG+TGG 0.637772 6.3:-11929989 MS.gene018209:CDS
TGATCAATGGTAAAAGAGTG+TGG 0.641005 6.3:+11932091 None:intergenic
AGTTGGTATGAACACAACAT+GGG 0.652368 6.3:-11931390 MS.gene018209:CDS
TTATAACTAACATTATGTGG+AGG 0.663994 6.3:-11929400 MS.gene018209:CDS
AAATAACGATGAAAACAGCA+AGG 0.668443 6.3:+11931738 None:intergenic
TGGTAAATTTAAATCAACCA+CGG 0.675631 6.3:+11932111 None:intergenic
AATGATGGCTGATCAAGCAA+TGG 0.680846 6.3:-11931045 MS.gene018209:CDS
GTTGCTCTCAATACAACTGG+TGG 0.691153 6.3:-11930708 MS.gene018209:CDS
AACGGAGTTAGAGAGTTCAA+CGG 0.709144 6.3:-11931203 MS.gene018209:CDS
AATGCAACGAAGACTACTAG+CGG 0.713239 6.3:+11930347 None:intergenic
ACCACGGTAAAAGATGGAGT+AGG 0.714251 6.3:+11932127 None:intergenic
GTTGGTATGAACACAACATG+GGG 0.725599 6.3:-11931389 MS.gene018209:CDS
GAGACACTTCAAAATCATGG+TGG 0.730865 6.3:-11932031 MS.gene018209:CDS
TGAGGACACAGATGAAACCG+TGG 0.741833 6.3:-11929951 MS.gene018209:CDS
ATCGAATCAATAGAACAACA+AGG 0.750277 6.3:+11931252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATGAAAATGAAAATAA+TGG - chr6.3:11931224-11931243 MS.gene018209:CDS 10.0%
!!! AAATGAATAAAACTTTTAGA+AGG + chr6.3:11929397-11929416 None:intergenic 15.0%
!!! TTTTTTATACATTAATTCCT+TGG + chr6.3:11931836-11931855 None:intergenic 15.0%
!! AAGTTTGAAAGAATTATTCA+AGG - chr6.3:11930903-11930922 MS.gene018209:intron 20.0%
!! AATTTGATTATGGATACATT+AGG - chr6.3:11931781-11931800 MS.gene018209:CDS 20.0%
!! ATACTCAAAAAATCAAGAAA+TGG + chr6.3:11932279-11932298 None:intergenic 20.0%
!! ATATTCAATGAAGAAAATGA+TGG - chr6.3:11930218-11930237 MS.gene018209:CDS 20.0%
!! GAGTTAACAAAATTACTATT+TGG + chr6.3:11931927-11931946 None:intergenic 20.0%
!! TCAATATTTGATATTGTTGT+TGG - chr6.3:11929673-11929692 MS.gene018209:CDS 20.0%
!! TTAATGTATAAAAAACCAGT+TGG - chr6.3:11931841-11931860 MS.gene018209:CDS 20.0%
!!! GTTCAATGTTTAAAACAAAA+AGG - chr6.3:11931454-11931473 MS.gene018209:CDS 20.0%
!!! TATAGTAACAGTTTTAAACT+GGG - chr6.3:11931621-11931640 MS.gene018209:CDS 20.0%
! AAAACTATTGTACATTGGAA+AGG - chr6.3:11930795-11930814 MS.gene018209:CDS 25.0%
! AATAAGTTAACATCATCGAT+CGG - chr6.3:11929973-11929992 MS.gene018209:CDS 25.0%
! AGAAAAAGCAATACTATCTT+GGG - chr6.3:11930650-11930669 MS.gene018209:CDS 25.0%
! ATTATGGGTGAATTTGATTA+TGG - chr6.3:11931771-11931790 MS.gene018209:CDS 25.0%
! ATTTCAATTAACAGTGAATG+TGG - chr6.3:11931681-11931700 MS.gene018209:CDS 25.0%
! CAATGACATTCAAATTGATT+TGG - chr6.3:11929624-11929643 MS.gene018209:CDS 25.0%
! CACATAATGTTAGTTATAAG+AGG + chr6.3:11931877-11931896 None:intergenic 25.0%
! CATGAAAATCTATTGTTCTA+GGG - chr6.3:11929090-11929109 MS.gene018209:CDS 25.0%
! CTCTTATAACTAACATTATG+TGG - chr6.3:11931875-11931894 MS.gene018209:CDS 25.0%
! TCAAATTCACCCATAATAAT+TGG + chr6.3:11931768-11931787 None:intergenic 25.0%
! TCATGAAAATCTATTGTTCT+AGG - chr6.3:11929089-11929108 MS.gene018209:CDS 25.0%
! TGAAAGAATTATTCAAGGTA+TGG - chr6.3:11930908-11930927 MS.gene018209:intron 25.0%
! TGGTAAATTTAAATCAACCA+CGG + chr6.3:11929170-11929189 None:intergenic 25.0%
! TGTTTAATGAGTTTAATGCA+AGG - chr6.3:11932031-11932050 MS.gene018209:CDS 25.0%
! TTAAGAAAAGAGTTGTAACA+AGG - chr6.3:11930399-11930418 MS.gene018209:CDS 25.0%
! TTATAACTAACATTATGTGG+AGG - chr6.3:11931878-11931897 MS.gene018209:CDS 25.0%
! TTATACATTAATTCCTTGGT+AGG + chr6.3:11931832-11931851 None:intergenic 25.0%
! TTGTTAACTCTTCAATTCAA+AGG - chr6.3:11931937-11931956 MS.gene018209:CDS 25.0%
!! TGTAACTATTCTAATCCTTT+TGG - chr6.3:11929438-11929457 MS.gene018209:CDS 25.0%
!! TTGATATTGTGATTTGTAAC+AGG - chr6.3:11930432-11930451 MS.gene018209:CDS 25.0%
!! TTTGGAATTGAAAATGGATA+TGG - chr6.3:11930677-11930696 MS.gene018209:CDS 25.0%
!!! AAGTTGTTTTTGGGAATTAT+TGG - chr6.3:11932096-11932115 MS.gene018209:CDS 25.0%
!!! AGAAGAAGAATGTTTTTGAA+GGG - chr6.3:11932061-11932080 MS.gene018209:CDS 25.0%
!!! AGAGAATGGATTATTTGTAT+TGG - chr6.3:11932192-11932211 MS.gene018209:CDS 25.0%
!!! ATAGTAACAGTTTTAAACTG+GGG - chr6.3:11931622-11931641 MS.gene018209:CDS 25.0%
!!! ATTTTGAAGACATTGCAATT+AGG - chr6.3:11929335-11929354 MS.gene018209:CDS 25.0%
!!! CTATAGTAACAGTTTTAAAC+TGG - chr6.3:11931620-11931639 MS.gene018209:CDS 25.0%
!!! TGAATAAAACTTTTAGAAGG+TGG + chr6.3:11929394-11929413 None:intergenic 25.0%
!!! TGGATTATTTGTATTGGTTT+TGG - chr6.3:11932198-11932217 MS.gene018209:CDS 25.0%
!!! TTTAAGAGCAAGTTGTTTTT+GGG - chr6.3:11932087-11932106 MS.gene018209:CDS 25.0%
!!! TTTCATCCTTTTTTACTTTC+CGG - chr6.3:11929823-11929842 MS.gene018209:CDS 25.0%
!!! TTTTAAGAGCAAGTTGTTTT+TGG - chr6.3:11932086-11932105 MS.gene018209:CDS 25.0%
!!! TTTTGTTGTTGAAGCTTTTA+AGG - chr6.3:11929414-11929433 MS.gene018209:CDS 25.0%
AAACTCGTATGCATAAATAG+AGG + chr6.3:11931206-11931225 None:intergenic 30.0%
AAAGCTATAGCATTTGAATG+TGG - chr6.3:11931289-11931308 MS.gene018209:CDS 30.0%
AAATAACGATGAAAACAGCA+AGG + chr6.3:11929543-11929562 None:intergenic 30.0%
AACAGCAGTCCAATTATTAT+GGG - chr6.3:11931756-11931775 MS.gene018209:CDS 30.0%
AACTCAAAGAAGAAAAGAAG+TGG - chr6.3:11930744-11930763 MS.gene018209:CDS 30.0%
AACTTCACAACAAAACCAAT+AGG + chr6.3:11932237-11932256 None:intergenic 30.0%
AATAATTGGACTGCTGTTAA+TGG + chr6.3:11931754-11931773 None:intergenic 30.0%
ACCATTAGAAGTTTGTCAAA+TGG + chr6.3:11931436-11931455 None:intergenic 30.0%
AGTCGAAAAAATATCTGTGA+TGG - chr6.3:11931399-11931418 MS.gene018209:CDS 30.0%
ATCGAATCAATAGAACAACA+AGG + chr6.3:11930029-11930048 None:intergenic 30.0%
ATGTGTTCAAGATACTATGA+TGG - chr6.3:11930840-11930859 MS.gene018209:intron 30.0%
ATTGAGACACTTCAAAATCA+TGG - chr6.3:11929244-11929263 MS.gene018209:CDS 30.0%
CAGAAAAAGCAATACTATCT+TGG - chr6.3:11930649-11930668 MS.gene018209:CDS 30.0%
CTTAAAACCAACATTGAGTT+TGG - chr6.3:11929292-11929311 MS.gene018209:CDS 30.0%
GATGTGATGAATGCAATTAT+TGG - chr6.3:11930117-11930136 MS.gene018209:intron 30.0%
GCAACAAAACTATTGTACAT+TGG - chr6.3:11930790-11930809 MS.gene018209:CDS 30.0%
GTGAATGTCAAAATGATTAC+AGG - chr6.3:11931119-11931138 MS.gene018209:CDS 30.0%
GTTCTTCAATTGATCAAAGA+AGG - chr6.3:11930546-11930565 MS.gene018209:CDS 30.0%
TAACAGCAGTCCAATTATTA+TGG - chr6.3:11931755-11931774 MS.gene018209:CDS 30.0%
TATGAGAGTTTCTTGATCAA+TGG + chr6.3:11929203-11929222 None:intergenic 30.0%
TCAAGATACTATGATGGTTA+TGG - chr6.3:11930846-11930865 MS.gene018209:intron 30.0%
TCCATTTGACAAACTTCTAA+TGG - chr6.3:11931432-11931451 MS.gene018209:CDS 30.0%
TGAGTTTAATGCAAGGAAAT+TGG - chr6.3:11932038-11932057 MS.gene018209:CDS 30.0%
TTAACATTGTTAGGACTTGT+CGG - chr6.3:11931035-11931054 MS.gene018209:CDS 30.0%
TTGATCAATTGAAGAACAGA+TGG + chr6.3:11930543-11930562 None:intergenic 30.0%
TTTGATACCAAACTCAATGT+TGG + chr6.3:11929302-11929321 None:intergenic 30.0%
TTTGTTCCGGAAAGTAAAAA+AGG + chr6.3:11929832-11929851 None:intergenic 30.0%
! AAAATGCTTGTTACATCAGT+TGG - chr6.3:11929871-11929890 MS.gene018209:CDS 30.0%
! AAGATGTTGGTTAAAGACAA+CGG - chr6.3:11931011-11931030 MS.gene018209:CDS 30.0%
! GATGTTGTTTGTTTGAAGAT+TGG - chr6.3:11929697-11929716 MS.gene018209:CDS 30.0%
! TCAAATGATACCTGTTTTGT+CGG + chr6.3:11930310-11930329 None:intergenic 30.0%
! TTATTCAACCTTGTTTGCAA+AGG + chr6.3:11929958-11929977 None:intergenic 30.0%
! TTCAAAGGTGAGGATATTTT+TGG - chr6.3:11931952-11931971 MS.gene018209:CDS 30.0%
!! AATCATTTTGACATTCACAC+CGG + chr6.3:11931117-11931136 None:intergenic 30.0%
!! CTATTGATTCGATATTTCAC+CGG - chr6.3:11930036-11930055 MS.gene018209:intron 30.0%
!! GAGAAGAAGAATGTTTTTGA+AGG - chr6.3:11932060-11932079 MS.gene018209:CDS 30.0%
!! TATTGATTCGATATTTCACC+GGG - chr6.3:11930037-11930056 MS.gene018209:intron 30.0%
!!! AGGTGGTTTTTTGTAATTGT+TGG + chr6.3:11929377-11929396 None:intergenic 30.0%
!!! GATAGTATTGCTTTTTCTGT+TGG + chr6.3:11930648-11930667 None:intergenic 30.0%
!!! TATTTTTGGTGTGACATCAA+AGG - chr6.3:11931966-11931985 MS.gene018209:CDS 30.0%
AAAGGTTGAATTGGAGAGAA+TGG - chr6.3:11932178-11932197 MS.gene018209:CDS 35.0%
AAAGTGTAGCACAAACCAAA+AGG + chr6.3:11929456-11929475 None:intergenic 35.0%
AAATCAACCACGGTAAAAGA+TGG + chr6.3:11929160-11929179 None:intergenic 35.0%
AACATGGAATCAAAGAAGGT+TGG - chr6.3:11929497-11929516 MS.gene018209:CDS 35.0%
AACTCTTCAATTCAAAGGTG+AGG - chr6.3:11931942-11931961 MS.gene018209:CDS 35.0%
AAGAAACACCTTTGCAAACA+AGG - chr6.3:11929947-11929966 MS.gene018209:CDS 35.0%
AAGCAACATGGAATCAAAGA+AGG - chr6.3:11929493-11929512 MS.gene018209:CDS 35.0%
ACTCACTTTGAATCAGATGA+AGG - chr6.3:11930458-11930477 MS.gene018209:CDS 35.0%
ATCACACACACAACAAAAGA+TGG - chr6.3:11929056-11929075 MS.gene018209:CDS 35.0%
CGAACGTTATCTCTGATTAT+AGG - chr6.3:11931247-11931266 MS.gene018209:CDS 35.0%
GACAACGGTTTAACATTGTT+AGG - chr6.3:11931026-11931045 MS.gene018209:CDS 35.0%
GCAATTAGGAAACAAGTGTT+TGG - chr6.3:11929349-11929368 MS.gene018209:CDS 35.0%
TATGGATACATTAGGTGCAT+TGG - chr6.3:11931789-11931808 MS.gene018209:CDS 35.0%
TCACAAATCGAAATCAGGTT+CGG - chr6.3:11930596-11930615 MS.gene018209:CDS 35.0%
TGATCAATGGTAAAAGAGTG+TGG + chr6.3:11929190-11929209 None:intergenic 35.0%
! AATACTATCTTGGGCTGTTT+TGG - chr6.3:11930659-11930678 MS.gene018209:CDS 35.0%
! AGAAATGGTTTATCTGAGAC+AGG + chr6.3:11932264-11932283 None:intergenic 35.0%
! AGTTGGTATGAACACAACAT+GGG - chr6.3:11929888-11929907 MS.gene018209:CDS 35.0%
!! ATCAAAGAAGGTTGGTATGA+TGG - chr6.3:11929505-11929524 MS.gene018209:CDS 35.0%
!! CAAATTGATTTGGTTCGAAG+TGG - chr6.3:11929634-11929653 MS.gene018209:CDS 35.0%
!! GAGTTTTTGAAGAAGTTTGC+TGG - chr6.3:11932150-11932169 MS.gene018209:CDS 35.0%
!! GATTCTGAATTCGAGTTTTC+AGG - chr6.3:11930618-11930637 MS.gene018209:CDS 35.0%
!! GTTTTGTTGAGAAGGAATGT+TGG - chr6.3:11930768-11930787 MS.gene018209:CDS 35.0%
!! TCTTTTGTTGTGTGTGTGAT+TGG + chr6.3:11929056-11929075 None:intergenic 35.0%
!!! AGGTGTGATTTTTGGTTTCT+TGG + chr6.3:11929134-11929153 None:intergenic 35.0%
!!! GGCTGTTTTGGAATTGAAAA+TGG - chr6.3:11930671-11930690 MS.gene018209:CDS 35.0%
!!! TGTGTGTGATTGGTGTTTTT+TGG + chr6.3:11929046-11929065 None:intergenic 35.0%
AAATTGTTCGCCTTCAACCA+CGG + chr6.3:11931347-11931366 None:intergenic 40.0%
AACGGAGTTAGAGAGTTCAA+CGG - chr6.3:11930075-11930094 MS.gene018209:intron 40.0%
AATGATGGCTGATCAAGCAA+TGG - chr6.3:11930233-11930252 MS.gene018209:CDS 40.0%
AATGCAACGAAGACTACTAG+CGG + chr6.3:11930934-11930953 None:intergenic 40.0%
ACATCATCGATCGGAAAAGT+TGG - chr6.3:11929982-11930001 MS.gene018209:CDS 40.0%
AGATGGAACAAATGATGCAC+CGG - chr6.3:11931498-11931517 MS.gene018209:CDS 40.0%
AGTAGACGACAACAAGATGT+TGG - chr6.3:11930998-11931017 MS.gene018209:CDS 40.0%
CTGGTACAGAAAGGTTGAAT+TGG - chr6.3:11932169-11932188 MS.gene018209:CDS 40.0%
GAACTCTCTAACTCCGTTAT+CGG + chr6.3:11930073-11930092 None:intergenic 40.0%
GAGACACTTCAAAATCATGG+TGG - chr6.3:11929247-11929266 MS.gene018209:CDS 40.0%
GCATTGAAAGAAGCCGATAT+CGG - chr6.3:11931520-11931539 MS.gene018209:CDS 40.0%
GGGAATTATTGGTGTGACAT+TGG - chr6.3:11932107-11932126 MS.gene018209:CDS 40.0%
GGTCTTTCAATGGGAATTCA+AGG - chr6.3:11931541-11931560 MS.gene018209:CDS 40.0%
GGTGTTCACAAATCGAAATC+AGG - chr6.3:11930591-11930610 MS.gene018209:CDS 40.0%
GTTGGTATGAACACAACATG+GGG - chr6.3:11929889-11929908 MS.gene018209:CDS 40.0%
GTTTCATCTGTGTCCTCATT+AGG + chr6.3:11931325-11931344 None:intergenic 40.0%
GTTTGTGCTACACTTTCACT+TGG - chr6.3:11929460-11929479 MS.gene018209:CDS 40.0%
TCCCATTGAAAGACCGATAT+CGG + chr6.3:11931536-11931555 None:intergenic 40.0%
TGCAACTGAAAAACCTACCA+AGG - chr6.3:11931816-11931835 MS.gene018209:CDS 40.0%
TGCATTGCTTTAGCGTATAC+CGG - chr6.3:11930948-11930967 MS.gene018209:intron 40.0%
TGCTGTTAATGGTACTTCAC+CGG + chr6.3:11931743-11931762 None:intergenic 40.0%
TGTTATCAATTTCGTAGCCG+CGG - chr6.3:11931711-11931730 MS.gene018209:CDS 40.0%
! ACTATTTGCACCGACAAAAC+AGG - chr6.3:11930297-11930316 MS.gene018209:CDS 40.0%
! AGATGAAGGTGACGAAGTTT+TGG - chr6.3:11930472-11930491 MS.gene018209:CDS 40.0%
! ATCGATCGGAAAAGTTGGTT+TGG - chr6.3:11929987-11930006 MS.gene018209:CDS 40.0%
! CAAAATCATGGTGGAGTTGA+AGG - chr6.3:11929256-11929275 MS.gene018209:CDS 40.0%
! CAGTTGGTATGAACACAACA+TGG - chr6.3:11929887-11929906 MS.gene018209:CDS 40.0%
! GAAGATTGGTGATCAAGTAC+CGG - chr6.3:11929711-11929730 MS.gene018209:CDS 40.0%
! GATGGAGTAGGTGTGATTTT+TGG + chr6.3:11929142-11929161 None:intergenic 40.0%
! GTTGTTGTTGCAATTCCTGA+GGG - chr6.3:11930165-11930184 MS.gene018209:CDS 40.0%
! TAGCACTTCGTTTTCAACTC+CGG + chr6.3:11930970-11930989 None:intergenic 40.0%
! TCCATCGACAACTTTTGTTC+CGG + chr6.3:11929845-11929864 None:intergenic 40.0%
! TGTTGTTGTTGCAATTCCTG+AGG - chr6.3:11930164-11930183 MS.gene018209:CDS 40.0%
!! AAAGAAGGTTGGTATGATGG+TGG - chr6.3:11929508-11929527 MS.gene018209:CDS 40.0%
!! AGAAGTTTGCTGGTACAGAA+AGG - chr6.3:11932160-11932179 MS.gene018209:CDS 40.0%
!! ATATCGGCTTCTTTCAATGC+CGG + chr6.3:11931520-11931539 None:intergenic 40.0%
!! ATTGGTGCTTCAAGTTGTGA+TGG - chr6.3:11932125-11932144 MS.gene018209:CDS 40.0%
!!! GAAGTGGAGTTTTGTTGAGA+AGG - chr6.3:11930760-11930779 MS.gene018209:CDS 40.0%
!!! TTGGTTTTGGTGCTGTTTCT+TGG - chr6.3:11932211-11932230 MS.gene018209:CDS 40.0%
ACAGATGAAACCGTGGTTGA+AGG - chr6.3:11931334-11931353 MS.gene018209:CDS 45.0%
ACCACGGTAAAAGATGGAGT+AGG + chr6.3:11929154-11929173 None:intergenic 45.0%
ACTCTCTGCATGTGAGACTA+TGG - chr6.3:11930263-11930282 MS.gene018209:CDS 45.0%
AGCCGATATCGGTCTTTCAA+TGG - chr6.3:11931531-11931550 MS.gene018209:CDS 45.0%
AGTGTCAGTGTCACAGCTAA+TGG + chr6.3:11930195-11930214 None:intergenic 45.0%
ATTAAGGATCCATGTCGTCC+GGG - chr6.3:11931059-11931078 MS.gene018209:CDS 45.0%
CATCTGTGTCCTCATTAGGT+CGG + chr6.3:11931321-11931340 None:intergenic 45.0%
CATTAAGGATCCATGTCGTC+CGG - chr6.3:11931058-11931077 MS.gene018209:CDS 45.0%
CTCCTGTTACAGCAACTACA+TGG + chr6.3:11931480-11931499 None:intergenic 45.0%
CTCTCTGCATGTGAGACTAT+GGG - chr6.3:11930264-11930283 MS.gene018209:CDS 45.0%
GAATATGCACCCTCTTCCAA+TGG + chr6.3:11930510-11930529 None:intergenic 45.0%
GCCGATATCGGTCTTTCAAT+GGG - chr6.3:11931532-11931551 MS.gene018209:CDS 45.0%
GCTACACTTTCACTTGGCTT+TGG - chr6.3:11929466-11929485 MS.gene018209:CDS 45.0%
GGAGTTGCTCTCAATACAAC+TGG - chr6.3:11930567-11930586 MS.gene018209:CDS 45.0%
GGGAACACAAAGACCGATAA+CGG - chr6.3:11930057-11930076 MS.gene018209:intron 45.0%
GTAGTTGCTGTAACAGGAGA+TGG - chr6.3:11931481-11931500 MS.gene018209:CDS 45.0%
GTTAGGACTTGTCGGCATTA+AGG - chr6.3:11931043-11931062 MS.gene018209:CDS 45.0%
GTTATCGGTCTTTGTGTTCC+CGG + chr6.3:11930058-11930077 None:intergenic 45.0%
GTTGCTCTCAATACAACTGG+TGG - chr6.3:11930570-11930589 MS.gene018209:CDS 45.0%
TCCGGAACAAAAGTTGTCGA+TGG - chr6.3:11929841-11929860 MS.gene018209:CDS 45.0%
TCTACGAACAATCCATCAGC+CGG + chr6.3:11929733-11929752 None:intergenic 45.0%
TGGAATTCTCCGACCTAATG+AGG - chr6.3:11931309-11931328 MS.gene018209:CDS 45.0%
! ACCTACTCCATCTTTTACCG+TGG - chr6.3:11929150-11929169 MS.gene018209:CDS 45.0%
! ATTTGGTTCGAAGTGGTCGT+CGG - chr6.3:11929641-11929660 MS.gene018209:CDS 45.0%
! GGAGTTGAAAACGAAGTGCT+AGG - chr6.3:11930969-11930988 MS.gene018209:intron 45.0%
! GGCTTTGGTATCAAGCAACA+TGG - chr6.3:11929481-11929500 MS.gene018209:CDS 45.0%
! GGTCTAGAACCATTGGAAGA+GGG - chr6.3:11930498-11930517 MS.gene018209:CDS 45.0%
! GTTGATGAATCGAGCATGAC+AGG - chr6.3:11929769-11929788 MS.gene018209:CDS 45.0%
! TGGTCTAGAACCATTGGAAG+AGG - chr6.3:11930497-11930516 MS.gene018209:CDS 45.0%
!! AGAGGCTTTGTTCTACCAAC+TGG + chr6.3:11931859-11931878 None:intergenic 45.0%
!! GCTGATGGATTGTTCGTAGA+TGG - chr6.3:11929733-11929752 MS.gene018209:CDS 45.0%
!! TTGGCTTGGTCTAGAACCAT+TGG - chr6.3:11930491-11930510 MS.gene018209:CDS 45.0%
!!! AAGGTGACGAAGTTTTGGCT+TGG - chr6.3:11930477-11930496 MS.gene018209:CDS 45.0%
ACAGCTAATGGCAAACCCTC+AGG + chr6.3:11930183-11930202 None:intergenic 50.0%
GGCCATGTAGTTGCTGTAAC+AGG - chr6.3:11931475-11931494 MS.gene018209:CDS 50.0%
TGACATTCACACCGGCATGT+TGG + chr6.3:11931109-11931128 None:intergenic 50.0%
TGAGGACACAGATGAAACCG+TGG - chr6.3:11931327-11931346 MS.gene018209:CDS 50.0%
TTGGAAAGGAGCAGCAGAGA+TGG - chr6.3:11930809-11930828 MS.gene018209:CDS 50.0%
! TCGAAGTGGTCGTCGGTTAA+AGG - chr6.3:11929648-11929667 MS.gene018209:CDS 50.0%
!! GGTGCTGTTTCTTGGCCTAT+TGG - chr6.3:11932219-11932238 MS.gene018209:CDS 50.0%
ATGTCGTCCGGGAGTGAAGA+CGG - chr6.3:11931070-11931089 MS.gene018209:CDS 55.0%
GTGGAAGCTTGCCAACATGC+CGG - chr6.3:11931095-11931114 MS.gene018209:CDS 55.0%
! TACTTCACCGGCTGAAACCG+CGG + chr6.3:11931731-11931750 None:intergenic 55.0%
!! GGTGATCAAGTACCGGCTGA+TGG - chr6.3:11929718-11929737 MS.gene018209:CDS 55.0%
GTCTTCACTCCCGGACGACA+TGG + chr6.3:11931071-11931090 None:intergenic 60.0%
TCCACTGCCGTCTTCACTCC+CGG + chr6.3:11931080-11931099 None:intergenic 60.0%
TTCGTAGCCGCGGTTTCAGC+CGG - chr6.3:11931721-11931740 MS.gene018209:CDS 60.0%
TCCGGGAGTGAAGACGGCAG+TGG - chr6.3:11931076-11931095 MS.gene018209:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 11928989 11932311 11928989 ID=MS.gene018209
chr6.3 mRNA 11928989 11932311 11928989 ID=MS.gene018209.t1;Parent=MS.gene018209
chr6.3 exon 11930982 11932311 11930982 ID=MS.gene018209.t1.exon1;Parent=MS.gene018209.t1
chr6.3 CDS 11930982 11932311 11930982 ID=cds.MS.gene018209.t1;Parent=MS.gene018209.t1
chr6.3 exon 11930160 11930846 11930160 ID=MS.gene018209.t1.exon2;Parent=MS.gene018209.t1
chr6.3 CDS 11930160 11930846 11930160 ID=cds.MS.gene018209.t1;Parent=MS.gene018209.t1
chr6.3 exon 11928989 11930031 11928989 ID=MS.gene018209.t1.exon3;Parent=MS.gene018209.t1
chr6.3 CDS 11928989 11930031 11928989 ID=cds.MS.gene018209.t1;Parent=MS.gene018209.t1
Gene Sequence

>MS.gene018209

ATGTCAATGACATTTTTCACAAACATGAACGACATTGAGACACTTCTCAATGCACCAAAAAACACCAATCACACACACAACAAAAGATGGCACAATGCATTCATGAAAATCTATTGTTCTAGGGCTTTCATGTTACATTTTACCAAGAAACCAAAAATCACACCTACTCCATCTTTTACCGTGGTTGATTTAAATTTACCACACTCTTTTACCATTGATCAAGAAACTCTCATAGATATTGTCAAAGAGAAAAACATTGAGACACTTCAAAATCATGGTGGAGTTGAAGGTGTTGCTTCATCACTTAAAACCAACATTGAGTTTGGTATCAAAAGTGATGATCATGATTTTGAAGACATTGCAATTAGGAAACAAGTGTTTGGTTCCAACAATTACAAAAAACCACCTTCTAAAAGTTTTATTCATTTTGTTGTTGAAGCTTTTAAGGATGTAACTATTCTAATCCTTTTGGTTTGTGCTACACTTTCACTTGGCTTTGGTATCAAGCAACATGGAATCAAAGAAGGTTGGTATGATGGTGGTAGCATTTTCCTTGCTGTTTTCATCGTTATTTCGATGTCATCAATAAGCAACTTCAAACAAAACAAACAATTTGATAAATTGTCTCAAGTTAGCAATGACATTCAAATTGATTTGGTTCGAAGTGGTCGTCGGTTAAAGGTATCAATATTTGATATTGTTGTTGGTGATGTTGTTTGTTTGAAGATTGGTGATCAAGTACCGGCTGATGGATTGTTCGTAGATGGACATTCGTTGAGAGTTGATGAATCGAGCATGACAGGTGAGAGCGATCATGTAGAGATAAATCGAAATTTTCATCCTTTTTTACTTTCCGGAACAAAAGTTGTCGATGGATATGCAAAAATGCTTGTTACATCAGTTGGTATGAACACAACATGGGGACAAATGATGAGTTCGATAAGCAATGATATCAACGAAGAAACACCTTTGCAAACAAGGTTGAATAAGTTAACATCATCGATCGGAAAAGTTGGTTTGGTTGTCGCGTTTTTAGTCCTTGTTGTTCTATTGATTCGATATTTCACCGGGAACACAAAGACCGATAACGGAGTTAGAGAGTTCAACGGTAGAAAGACTAGTTTCAATGATGTGATGAATGCAATTATTGGAATTATTGCTGATGCTGTTACTATTGTTGTTGTTGCAATTCCTGAGGGTTTGCCATTAGCTGTGACACTGACACTTGCATATTCAATGAAGAAAATGATGGCTGATCAAGCAATGGTGAGAAAACTCTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACCGACAAAACAGGTATCATTTGAAAAAAACTTGATTCTTTAAAAGTTGTTTTCAAAAGTGATTATTCATTTTGATTCTCTAAAATTTATTTTTTAAGAAAAGAGTTGTAACAAGGAGTCTTACTTTTGATATTGTGATTTGTAACAGGTACACTCACTTTGAATCAGATGAAGGTGACGAAGTTTTGGCTTGGTCTAGAACCATTGGAAGAGGGTGCATATTCAAATGTTGATCCATCTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCTCAATACAACTGGTGGTGTTCACAAATCGAAATCAGGTTCGGATTCTGAATTCGAGTTTTCAGGTAGTCCAACAGAAAAAGCAATACTATCTTGGGCTGTTTTGGAATTGAAAATGGATATGGAGCACTTGACAAAAAGTTGTTCTATTATTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAGAAGGAATGTTGGCAACAAAACTATTGTACATTGGAAAGGAGCAGCAGAGATGGTTCTAAGAATGTGTTCAAGATACTATGATGGTTATGGAATTTTGAAAGATCTTGACAATGAATCTATGTCAAAGTTTGAAAGAATTATTCAAGGTATGGCCGCTAGTAGTCTTCGTTGCATTGCTTTAGCGTATACCGGAGTTGAAAACGAAGTGCTAGGACATGAAGTAGACGACAACAAGATGTTGGTTAAAGACAACGGTTTAACATTGTTAGGACTTGTCGGCATTAAGGATCCATGTCGTCCGGGAGTGAAGACGGCAGTGGAAGCTTGCCAACATGCCGGTGTGAATGTCAAAATGATTACAGGTATTACTAAAATATCTCATTTATCAGTAACTTGATTTTTCGATCGATATTGAATATAAAATCCTCTATTTATGCATACGAGTTTATATGAAAATGAAAATAATGGCGAACGTTATCTCTGATTATAGGTGACAATGTTTTCACTGCGAAAGCTATAGCATTTGAATGTGGAATTCTCCGACCTAATGAGGACACAGATGAAACCGTGGTTGAAGGCGAACAATTTCGCAACTTTACGCACGAAGAGAGATTAGAAAAAGTCGAAAAAATATCTGTGATGGCAAGATCTTCTCCATTTGACAAACTTCTAATGGTTCAATGTTTAAAACAAAAAGGCCATGTAGTTGCTGTAACAGGAGATGGAACAAATGATGCACCGGCATTGAAAGAAGCCGATATCGGTCTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGACGACAATTTCGCATCTATAGTAACAGTTTTAAACTGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAATTAACAGTGAATGTGGCAGCACTTGTTATCAATTTCGTAGCCGCGGTTTCAGCCGGTGAAGTACCATTAACAGCAGTCCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCATTGGCTCTTGCAACTGAAAAACCTACCAAGGAATTAATGTATAAAAAACCAGTTGGTAGAACAAAGCCTCTTATAACTAACATTATGTGGAGGAATCTTGTGTCACAAGCTTTGTACCAAATAGTAATTTTGTTAACTCTTCAATTCAAAGGTGAGGATATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATATTTAATACATTTGTTCTATGTCAAGTGTTTAATGAGTTTAATGCAAGGAAATTGGAGAAGAAGAATGTTTTTGAAGGGATTTTTAAGAGCAAGTTGTTTTTGGGAATTATTGGTGTGACATTGGTGCTTCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTGGTACAGAAAGGTTGAATTGGAGAGAATGGATTATTTGTATTGGTTTTGGTGCTGTTTCTTGGCCTATTGGTTTTGTTGTGAAGTTGATACCTGTCTCAGATAAACCATTTCTTGATTTTTTGAGTATGAAGAAGACTTAG
Protein sequence

>MS.gene018209.t1

MSMTFFTNMNDIETLLNAPKNTNHTHNKRWHNAFMKIYCSRAFMLHFTKKPKITPTPSFTVVDLNLPHSFTIDQETLIDIVKEKNIETLQNHGGVEGVASSLKTNIEFGIKSDDHDFEDIAIRKQVFGSNNYKKPPSKSFIHFVVEAFKDVTILILLVCATLSLGFGIKQHGIKEGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRLKVSIFDIVVGDVVCLKIGDQVPADGLFVDGHSLRVDESSMTGESDHVEINRNFHPFLLSGTKVVDGYAKMLVTSVGMNTTWGQMMSSISNDINEETPLQTRLNKLTSSIGKVGLVVAFLVLVVLLIRYFTGNTKTDNGVREFNGRKTSFNDVMNAIIGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPLEEGAYSNVDPSVLQLIKEGVALNTTGGVHKSKSGSDSEFEFSGSPTEKAILSWAVLELKMDMEHLTKSCSIIQVETFNSKKKRSGVLLRRNVGNKTIVHWKGAAEMVLRMCSRYYDGYGILKDLDNESMSKFERIIQGMAASSLRCIALAYTGVENEVLGHEVDDNKMLVKDNGLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNVFTAKAIAFECGILRPNEDTDETVVEGEQFRNFTHEERLEKVEKISVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMYKKPVGRTKPLITNIMWRNLVSQALYQIVILLTLQFKGEDIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFKSKLFLGIIGVTLVLQVVMVEFLKKFAGTERLNWREWIICIGFGAVSWPIGFVVKLIPVSDKPFLDFLSMKKT