AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020290.t1 MTR_7g095710 98.207 948 17 0 1 948 115 1062 0.0 1919
MS.gene020290.t1 MTR_6g016470 68.617 940 280 6 1 933 83 1014 0.0 1284
MS.gene020290.t1 MTR_4g008170 57.524 937 380 9 1 929 159 1085 0.0 1022
MS.gene020290.t1 MTR_4g008170 57.082 946 377 11 1 929 159 1092 0.0 1007
MS.gene020290.t1 MTR_2g038310 55.662 936 400 6 1 929 146 1073 0.0 999
MS.gene020290.t1 MTR_2g038310 56.140 855 360 6 1 848 146 992 0.0 902
MS.gene020290.t1 MTR_4g008650 47.436 936 447 15 3 925 108 1011 0.0 823
MS.gene020290.t1 MTR_8g090125 46.878 945 453 15 2 930 63 974 0.0 812
MS.gene020290.t1 MTR_4g096990 48.443 931 444 11 3 925 110 1012 0.0 811
MS.gene020290.t1 MTR_3g103070 47.863 936 447 13 2 925 110 1016 0.0 804
MS.gene020290.t1 MTR_5g015590 47.803 933 449 12 3 925 110 1014 0.0 801
MS.gene020290.t1 MTR_8g013780 67.414 580 176 7 363 938 1 571 0.0 792
MS.gene020290.t1 MTR_0005s0140 45.484 941 464 14 5 928 28 936 0.0 781
MS.gene020290.t1 MTR_4g043690 45.387 943 466 14 3 928 111 1021 0.0 781
MS.gene020290.t1 MTR_3g103070 48.792 869 404 13 69 925 1 840 0.0 761
MS.gene020290.t1 MTR_2g105830 54.762 714 310 9 1 711 148 851 0.0 731
MS.gene020290.t1 MTR_5g015590 47.194 873 417 13 3 859 110 954 0.0 724
MS.gene020290.t1 MTR_8g446010 41.738 932 494 15 9 925 70 967 0.0 671
MS.gene020290.t1 MTR_8g045070 40.880 932 479 15 9 925 70 944 0.0 651
MS.gene020290.t1 MTR_4g008650 46.438 758 365 14 3 751 108 833 0.0 640
MS.gene020290.t1 MTR_5g015590 46.358 755 371 11 3 751 110 836 0.0 605
MS.gene020290.t1 MTR_5g015590 44.921 699 351 11 3 695 110 780 1.64e-172 522
MS.gene020290.t1 MTR_8g013810 71.585 366 101 1 1 363 82 447 4.13e-172 511
MS.gene020290.t1 MTR_5g097270 32.337 937 559 20 2 916 114 997 1.39e-141 449
MS.gene020290.t1 MTR_4g014480 29.989 947 575 20 1 925 69 949 1.19e-116 381
MS.gene020290.t1 MTR_7g100110 31.770 853 455 24 31 789 47 866 7.91e-100 337
MS.gene020290.t1 MTR_8g027160 30.222 857 496 21 31 807 35 869 9.83e-95 320
MS.gene020290.t1 MTR_8g027160 28.902 993 584 29 31 924 35 1004 1.04e-94 323
MS.gene020290.t1 MTR_3g103270 28.455 984 568 26 17 903 41 985 1.21e-94 322
MS.gene020290.t1 MTR_2g105690 63.348 221 76 1 714 929 22 242 4.42e-92 293
MS.gene020290.t1 MTR_8g027160 29.475 743 423 20 31 694 35 755 1.18e-69 247
MS.gene020290.t1 MTR_8g027160 29.341 743 424 20 31 694 35 755 5.91e-69 245
MS.gene020290.t1 MTR_4g116950 25.350 714 419 21 38 737 44 657 1.76e-49 190
MS.gene020290.t1 MTR_7g117500 24.381 767 461 24 31 781 43 706 4.25e-49 189
MS.gene020290.t1 MTR_4g127710 23.810 714 444 19 31 737 39 659 9.89e-47 181
MS.gene020290.t1 MTR_4g127710 23.810 714 444 19 31 737 39 659 1.31e-46 181
MS.gene020290.t1 MTR_3g108800 24.051 711 446 18 31 737 35 655 1.39e-46 181
MS.gene020290.t1 MTR_3g108800 24.051 711 446 18 31 737 36 656 1.39e-46 181
MS.gene020290.t1 MTR_2g449840 23.973 730 438 22 31 745 37 664 1.58e-46 181
MS.gene020290.t1 MTR_7g117500 23.797 769 452 25 31 781 43 695 9.41e-46 178
MS.gene020290.t1 MTR_2g104860 24.205 723 441 22 33 745 36 661 2.51e-45 177
MS.gene020290.t1 MTR_8g089870 25.275 819 501 26 15 802 15 753 3.28e-45 176
MS.gene020290.t1 MTR_2g036650 23.001 713 452 16 31 737 41 662 5.30e-45 176
MS.gene020290.t1 MTR_4g107500 25.352 639 365 21 131 754 137 678 9.34e-45 175
MS.gene020290.t1 MTR_8g063880 23.422 713 448 20 31 737 36 656 9.39e-45 175
MS.gene020290.t1 MTR_1g009760 22.880 743 466 21 10 737 9 659 1.01e-44 174
MS.gene020290.t1 MTR_1g009760 23.001 713 451 20 31 737 36 656 2.93e-44 174
MS.gene020290.t1 MTR_6g011310 25.585 641 361 22 131 754 135 676 4.20e-44 173
MS.gene020290.t1 MTR_6g011310 25.117 641 359 21 131 754 135 671 5.91e-43 169
MS.gene020290.t1 MTR_1g009720 22.937 715 449 21 31 737 36 656 9.48e-43 169
MS.gene020290.t1 MTR_8g006790 22.659 737 444 21 31 745 38 670 3.18e-41 164
MS.gene020290.t1 MTR_4g094695 23.983 688 405 19 59 740 362 937 6.03e-26 115
MS.gene020290.t1 MTR_3g097560 24.468 752 413 31 30 700 166 843 9.81e-25 112
MS.gene020290.t1 MTR_2g090610 21.387 865 516 29 52 783 34 867 2.78e-19 94.0
MS.gene020290.t1 MTR_2g090610 21.387 865 516 29 52 783 34 867 2.90e-19 94.4
MS.gene020290.t1 MTR_2g035840 30.811 185 94 2 558 742 788 938 5.41e-18 90.1
MS.gene020290.t1 MTR_8g079250 27.568 185 100 2 558 742 788 938 2.41e-16 84.7
MS.gene020290.t1 MTR_5g010420 31.250 160 76 2 560 719 781 906 9.29e-16 82.8
MS.gene020290.t1 MTR_8g012390 29.730 185 96 2 558 742 759 909 1.82e-14 78.6
MS.gene020290.t1 MTR_4g008640 40.000 105 52 2 495 599 77 170 6.71e-14 71.2
MS.gene020290.t1 MTR_5g052190 50.000 66 32 1 437 502 282 346 2.44e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020290.t1 AT3G63380 73.340 934 232 5 2 935 100 1016 0.0 1321
MS.gene020290.t1 AT3G22910 68.936 940 272 6 1 938 94 1015 0.0 1238
MS.gene020290.t1 AT4G29900 56.794 942 391 8 1 935 127 1059 0.0 1033
MS.gene020290.t1 AT4G29900 56.794 942 391 8 1 935 127 1059 0.0 1033
MS.gene020290.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene020290.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene020290.t1 AT5G57110 56.303 936 391 6 1 929 127 1051 0.0 1027
MS.gene020290.t1 AT3G21180 55.932 944 397 9 1 935 141 1074 0.0 995
MS.gene020290.t1 AT3G57330 48.453 937 434 14 1 925 106 1005 0.0 854
MS.gene020290.t1 AT3G57330 48.453 937 434 14 1 925 51 950 0.0 853
MS.gene020290.t1 AT2G41560 47.447 940 444 15 3 928 108 1011 0.0 825
MS.gene020290.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene020290.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene020290.t1 AT2G41560 47.553 940 443 16 3 928 6 909 0.0 825
MS.gene020290.t1 AT1G27770 47.701 935 449 11 3 925 48 954 0.0 805
MS.gene020290.t1 AT1G27770 47.701 935 449 11 3 925 111 1017 0.0 805
MS.gene020290.t1 AT1G27770 47.701 935 449 11 3 925 111 1017 0.0 805
MS.gene020290.t1 AT4G37640 48.081 938 440 11 3 925 109 1014 0.0 794
MS.gene020290.t1 AT2G22950 47.868 938 443 15 3 925 109 1015 0.0 792
MS.gene020290.t1 AT5G53010 35.398 904 493 14 1 872 153 997 5.27e-164 508
MS.gene020290.t1 AT1G27770 40.759 606 327 11 3 600 111 692 2.82e-117 382
MS.gene020290.t1 AT1G27770 56.958 309 128 2 622 925 635 943 8.36e-112 367
MS.gene020290.t1 AT5G53010 35.093 644 395 7 1 642 153 775 6.24e-112 363
MS.gene020290.t1 AT1G07810 31.523 847 484 22 31 806 47 868 5.21e-106 354
MS.gene020290.t1 AT1G07670 31.604 848 482 22 31 806 47 868 4.49e-105 351
MS.gene020290.t1 AT1G07670 31.604 848 482 22 31 806 47 868 4.49e-105 351
MS.gene020290.t1 AT4G00900 30.160 998 569 28 31 924 30 1003 1.57e-101 342
MS.gene020290.t1 AT4G00900 30.160 998 569 28 31 924 30 1003 1.57e-101 342
MS.gene020290.t1 AT1G10130 28.786 997 575 27 20 923 16 970 3.41e-94 320
MS.gene020290.t1 AT3G60330 24.288 737 424 24 31 745 37 661 1.30e-49 191
MS.gene020290.t1 AT3G60330 24.288 737 424 24 31 745 37 661 1.30e-49 191
MS.gene020290.t1 AT3G60330 24.152 737 425 24 31 745 37 661 2.92e-49 189
MS.gene020290.t1 AT3G60330 24.152 737 425 24 31 745 37 661 2.92e-49 189
MS.gene020290.t1 AT2G24520 24.473 711 443 19 31 737 16 636 1.26e-48 187
MS.gene020290.t1 AT2G24520 24.473 711 443 19 31 737 16 636 1.26e-48 187
MS.gene020290.t1 AT2G24520 24.473 711 443 19 31 737 79 699 1.52e-48 187
MS.gene020290.t1 AT1G17260 23.776 858 523 25 13 848 27 775 3.57e-48 186
MS.gene020290.t1 AT3G42640 24.561 741 420 25 31 745 37 664 3.74e-47 183
MS.gene020290.t1 AT2G18960 26.010 619 351 16 131 737 67 590 3.31e-44 173
MS.gene020290.t1 AT2G18960 26.010 619 351 16 131 737 67 590 3.31e-44 173
MS.gene020290.t1 AT2G18960 26.010 619 351 16 131 737 131 654 5.65e-44 173
MS.gene020290.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene020290.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene020290.t1 AT5G57350 24.167 720 420 21 38 737 42 655 3.60e-43 170
MS.gene020290.t1 AT2G07560 23.481 724 448 22 31 745 37 663 6.96e-43 169
MS.gene020290.t1 AT4G30190 23.977 709 435 18 38 737 41 654 8.65e-43 169
MS.gene020290.t1 AT1G80660 23.731 729 441 23 31 745 39 666 1.48e-42 168
MS.gene020290.t1 AT1G80660 23.731 729 441 23 31 745 39 666 1.60e-42 168
MS.gene020290.t1 AT5G62670 24.214 636 376 20 131 754 135 676 1.65e-42 168
MS.gene020290.t1 AT1G80660 23.731 729 441 23 31 745 39 666 2.14e-42 168
MS.gene020290.t1 AT1G80660 25.080 626 363 20 131 745 7 537 1.09e-41 165
MS.gene020290.t1 AT3G47950 24.111 647 363 21 131 754 139 680 1.17e-41 166
MS.gene020290.t1 AT3G47950 24.111 647 363 21 131 754 139 680 1.17e-41 166
MS.gene020290.t1 AT4G30190 23.004 739 438 19 38 737 41 687 2.56e-38 155
MS.gene020290.t1 AT2G24520 25.173 433 268 9 305 737 17 393 3.01e-33 137
MS.gene020290.t1 AT5G57350 25.282 443 255 12 305 737 17 393 2.00e-30 129
MS.gene020290.t1 AT4G11730 23.251 486 303 13 94 575 92 511 8.45e-22 102
MS.gene020290.t1 AT1G63440 31.892 185 92 3 558 742 787 937 6.46e-19 93.2
MS.gene020290.t1 AT5G23630 22.117 737 422 24 30 687 166 829 3.19e-18 90.9
MS.gene020290.t1 AT5G44790 31.892 185 92 2 558 742 798 948 2.40e-17 87.8
MS.gene020290.t1 AT4G30110 27.895 190 106 3 555 744 508 666 5.26e-16 83.6
MS.gene020290.t1 AT4G30110 27.895 190 106 3 555 744 508 666 5.26e-16 83.6
MS.gene020290.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3
MS.gene020290.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3
MS.gene020290.t1 AT2G19110 25.316 237 133 5 555 791 518 710 4.60e-13 74.3

Find 0 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGATTATATGATCAAA+AGG - 50684:7775-7794 MS.gene020290:CDS 15.0%
!!! TATTGATTATATGATCAAAA+GGG - 50684:7776-7795 MS.gene020290:CDS 15.0%
!! AGAAACTTTATGTATTTGAA+GGG - 50684:8738-8757 MS.gene020290:CDS 20.0%
!! ATTCATAACATCGTTTATAT+CGG + 50684:7034-7053 MS.gene020290:intergenic 20.0%
!! GATCATATAATCAATATCTT+CGG + 50684:7772-7791 MS.gene020290:intergenic 20.0%
!!! ACAAACTATATTGATAGTAA+TGG - 50684:7633-7652 MS.gene020290:CDS 20.0%
! AGTTAAATGTTTCAACATGA+AGG + 50684:7512-7531 MS.gene020290:intergenic 25.0%
! ATCAATCTTCAATGTAAGTA+AGG - 50684:8640-8659 MS.gene020290:CDS 25.0%
! CACATAATGTTTGTAATAAG+AGG + 50684:8554-8573 MS.gene020290:intergenic 25.0%
! CTCTTATTACAAACATTATG+TGG - 50684:8552-8571 MS.gene020290:CDS 25.0%
! GAGAAACTTTATGTATTTGA+AGG - 50684:8737-8756 MS.gene020290:CDS 25.0%
! GTTGAAACTGAATAAATTTC+TGG + 50684:8346-8365 MS.gene020290:intergenic 25.0%
! TCAAAAATTGATATCTGTTG+AGG + 50684:6589-6608 MS.gene020290:intergenic 25.0%
! TGATACAGAAAGATTAACAT+GGG - 50684:8847-8866 MS.gene020290:CDS 25.0%
! TTAATGAAGAAAAAGCCAAT+AGG - 50684:8518-8537 MS.gene020290:CDS 25.0%
!! ACAAAATGTAAAAGACCTTT+TGG + 50684:6325-6344 MS.gene020290:intergenic 25.0%
!! ACTTGTTTCTTGGAATTATT+GGG - 50684:8774-8793 MS.gene020290:CDS 25.0%
!! ATCAATTTTTGATGTTCTTG+TGG - 50684:6597-6616 MS.gene020290:CDS 25.0%
!! TCAATTTTTGATGTTCTTGT+GGG - 50684:6598-6617 MS.gene020290:CDS 25.0%
!! TTCTTCATTAACTCTTTTGT+AGG + 50684:8509-8528 MS.gene020290:intergenic 25.0%
!! TTCTTCTAGTGTTGTTAATT+CGG - 50684:6950-6969 MS.gene020290:CDS 25.0%
!! TTCTTTTATACCAAAACCAA+GGG + 50684:6404-6423 MS.gene020290:intergenic 25.0%
AAAATTGAGAGAACCATTCA+AGG - 50684:7690-7709 MS.gene020290:CDS 30.0%
AAAGTTGAAGTTGTGAGAAA+TGG - 50684:6559-6578 MS.gene020290:CDS 30.0%
AACAAAAAAGGAGCTCTTAA+AGG + 50684:6745-6764 MS.gene020290:intergenic 30.0%
AACAACAGTTCAACTTCTTT+GGG - 50684:8433-8452 MS.gene020290:CDS 30.0%
AATAATGATCATGCAAATGC+TGG - 50684:7996-8015 MS.gene020290:CDS 30.0%
AATCTCATTATGGATACACT+AGG - 50684:8458-8477 MS.gene020290:CDS 30.0%
AATCTTCAATGTAAGTAAGG+AGG - 50684:8643-8662 MS.gene020290:CDS 30.0%
AGAAGTTGAACTGTTGTTAA+AGG + 50684:8431-8450 MS.gene020290:intergenic 30.0%
AGTTGAATTCGTTGAAAACT+TGG + 50684:8706-8725 MS.gene020290:intergenic 30.0%
ATTAGATTTAGGTATGGACA+TGG - 50684:7461-7480 MS.gene020290:CDS 30.0%
CAATAATTCCAAGAAACAAG+TGG + 50684:8775-8794 MS.gene020290:intergenic 30.0%
CTGATACAGAAAGATTAACA+TGG - 50684:8846-8865 MS.gene020290:CDS 30.0%
GTTGAAATTAAGATGATCAC+CGG - 50684:7918-7937 MS.gene020290:CDS 30.0%
TAACAACAGTTCAACTTCTT+TGG - 50684:8432-8451 MS.gene020290:CDS 30.0%
TATTGTTCTTCAAATCCTGA+TGG - 50684:8802-8821 MS.gene020290:CDS 30.0%
TCTCATTTGATTCAATGTCA+AGG + 50684:7250-7269 MS.gene020290:intergenic 30.0%
TGAATTCAGAAACTATACAG+AGG - 50684:8037-8056 MS.gene020290:CDS 30.0%
TTACTCCATGAAAAGAATGA+TGG - 50684:7143-7162 MS.gene020290:CDS 30.0%
TTCCTTCAGTTATACTAAGT+GGG - 50684:8955-8974 MS.gene020290:CDS 30.0%
TTGTTAATTCGGTATTTCAC+CGG - 50684:6961-6980 MS.gene020290:CDS 30.0%
! AAATGTAAAAGACCTTTTGG+TGG + 50684:6322-6341 MS.gene020290:intergenic 30.0%
! ATTCTGTTGCAACTGTTTTA+AGG - 50684:8294-8313 MS.gene020290:CDS 30.0%
! CACTTGTTTCTTGGAATTAT+TGG - 50684:8773-8792 MS.gene020290:CDS 30.0%
! CTTAAAAACCACTTGTTTCT+TGG - 50684:8764-8783 MS.gene020290:CDS 30.0%
! CTTCTGATTATGCAGTTTTA+TGG - 50684:8614-8633 MS.gene020290:CDS 30.0%
! GATCTGAACCTGAAATTTTA+GGG - 50684:7403-7422 MS.gene020290:CDS 30.0%
! GTTCTTTTATACCAAAACCA+AGG + 50684:6405-6424 MS.gene020290:intergenic 30.0%
! TCCTATATCAGCTTCTTTTA+AGG + 50684:8201-8220 MS.gene020290:intergenic 30.0%
! TGAAAACTTTTCCAATGCAA+TGG - 50684:7305-7324 MS.gene020290:CDS 30.0%
!! GGTTTTGGTATAAAAGAACA+TGG - 50684:6406-6425 MS.gene020290:CDS 30.0%
AAAGAAAGGTCATGTAGTTG+CGG - 50684:8145-8164 MS.gene020290:CDS 35.0%
AAAGATTAACATGGGAGCAA+TGG - 50684:8855-8874 MS.gene020290:CDS 35.0%
AAAGGGAATAAGGAATTTCG+AGG - 50684:7000-7019 MS.gene020290:CDS 35.0%
AACCCACTTAGTATAACTGA+AGG + 50684:8960-8979 MS.gene020290:intergenic 35.0%
AACTCAGAAAAGAAACGAAG+TGG - 50684:7528-7547 MS.gene020290:CDS 35.0%
AAGATTAACATGGGAGCAAT+GGG - 50684:8856-8875 MS.gene020290:CDS 35.0%
AAGGCAATAGCAATAGAATG+TGG - 50684:7960-7979 MS.gene020290:CDS 35.0%
AATGTTTGTAATAAGAGGCG+CGG + 50684:8549-8568 MS.gene020290:intergenic 35.0%
ACATGATGAGAAAGGGAATA+AGG - 50684:6990-7009 MS.gene020290:CDS 35.0%
ACCATCAAAAGTTTGTCCAT+AGG + 50684:8113-8132 MS.gene020290:intergenic 35.0%
ACTTTCAGCTTGTGAAACTA+TGG - 50684:7188-7207 MS.gene020290:CDS 35.0%
AGCTGATATAGGACTTTCTA+TGG - 50684:8208-8227 MS.gene020290:CDS 35.0%
ATGTGGGCAGTATTAGATTT+AGG - 50684:7450-7469 MS.gene020290:CDS 35.0%
CAATGTAAGTAAGGAGGTAA+AGG - 50684:8649-8668 MS.gene020290:CDS 35.0%
CACTTAGTATAACTGAAGGA+AGG + 50684:8956-8975 MS.gene020290:intergenic 35.0%
CATCAAAAGTTTGTCCATAG+GGG + 50684:8111-8130 MS.gene020290:intergenic 35.0%
CATCAAATGCTTAGAGAAGA+TGG - 50684:7810-7829 MS.gene020290:CDS 35.0%
CCATCAAAAGTTTGTCCATA+GGG + 50684:8112-8131 MS.gene020290:intergenic 35.0%
CGATAACATATTCACTGCTA+AGG - 50684:7941-7960 MS.gene020290:CDS 35.0%
CTTCCTTCAGTTATACTAAG+TGG - 50684:8954-8973 MS.gene020290:CDS 35.0%
CTTGGAACATTTCCAACAAA+GGG - 50684:6226-6245 MS.gene020290:CDS 35.0%
CTTTCAGCTTGTGAAACTAT+GGG - 50684:7189-7208 MS.gene020290:CDS 35.0%
GATAAAAATACTCCATCAGC+TGG + 50684:6658-6677 MS.gene020290:intergenic 35.0%
GCCTTAAAAGAAGCTGATAT+AGG - 50684:8197-8216 MS.gene020290:CDS 35.0%
GCTGATATAGGACTTTCTAT+GGG - 50684:8209-8228 MS.gene020290:CDS 35.0%
GGCAGTATTAGATTTAGGTA+TGG - 50684:7455-7474 MS.gene020290:CDS 35.0%
GTAACTCACATGATGAGAAA+GGG - 50684:6983-7002 MS.gene020290:CDS 35.0%
GTATAAAAGAACATGGACCA+GGG - 50684:6413-6432 MS.gene020290:CDS 35.0%
GTGCAATGCTTAAGAAAGAA+AGG - 50684:8131-8150 MS.gene020290:CDS 35.0%
TATAAAAGAACATGGACCAG+GGG - 50684:6414-6433 MS.gene020290:CDS 35.0%
TCTTGGAACATTTCCAACAA+AGG - 50684:6225-6244 MS.gene020290:CDS 35.0%
TCTTTGGGTGAATCTCATTA+TGG - 50684:8448-8467 MS.gene020290:CDS 35.0%
TGTGGGAAAAAACACATCAT+GGG - 50684:6813-6832 MS.gene020290:CDS 35.0%
TTAAAGGCTCAATCTCTACA+TGG + 50684:6729-6748 MS.gene020290:intergenic 35.0%
TTCAAGACCAAGACAAAACT+TGG + 50684:7277-7296 MS.gene020290:intergenic 35.0%
TTGAAGTCCTTAACTGAGTT+TGG - 50684:6178-6197 MS.gene020290:CDS 35.0%
TTGAAGTTGTGAGAAATGGA+AGG - 50684:6563-6582 MS.gene020290:CDS 35.0%
TTTATTGCAGCAGTTTCTTC+TGG - 50684:8398-8417 MS.gene020290:CDS 35.0%
TTTCCAACAAAGGGAATCAT+TGG - 50684:6235-6254 MS.gene020290:CDS 35.0%
TTTCTCATCATGTGAGTTAC+CGG + 50684:6983-7002 MS.gene020290:intergenic 35.0%
! AAGGAAGGTTTATCTGAAAC+AGG + 50684:8941-8960 MS.gene020290:intergenic 35.0%
! ATATTGATAGTAATGGCGTG+AGG - 50684:7640-7659 MS.gene020290:CDS 35.0%
! ATCATTCTTCTTGTTTGTGC+TGG - 50684:6373-6392 MS.gene020290:CDS 35.0%
! ATCTGCCATCATTCTTTTCA+TGG + 50684:7151-7170 MS.gene020290:intergenic 35.0%
! GGATCTGAACCTGAAATTTT+AGG - 50684:7402-7421 MS.gene020290:CDS 35.0%
! GTTATCTGCACTGATAAAAC+AGG - 50684:7222-7241 MS.gene020290:CDS 35.0%
! TCTAGCAGTTTTTCTTGTTG+TGG - 50684:6465-6484 MS.gene020290:CDS 35.0%
! TGGAACAACTCAAGAACTTT+TGG + 50684:7333-7352 MS.gene020290:intergenic 35.0%
! TTCTTGAGTTGTTCCAACAA+GGG - 50684:7337-7356 MS.gene020290:CDS 35.0%
! TTGGAATTGCAGTTGTTTCA+TGG - 50684:8888-8907 MS.gene020290:CDS 35.0%
!! ATGTATTGCTTTTGCTCACA+CGG - 50684:7734-7753 MS.gene020290:CDS 35.0%
!! GCTGATGGAGTATTTTTATC+CGG - 50684:6658-6677 MS.gene020290:CDS 35.0%
!!! ATATCAGCTTCTTTTAAGGC+AGG + 50684:8197-8216 MS.gene020290:intergenic 35.0%
!!! TGTTGCAACTGTTTTAAGGT+GGG - 50684:8298-8317 MS.gene020290:CDS 35.0%
AACTCCTCCAAACTCAGTTA+AGG + 50684:6188-6207 MS.gene020290:intergenic 40.0%
AAGTCCTTAACTGAGTTTGG+AGG - 50684:6181-6200 MS.gene020290:CDS 40.0%
AATGATGGCAGATCATGCTA+TGG - 50684:7158-7177 MS.gene020290:CDS 40.0%
ACCAAACACTAAGAAAGCTG+TGG - 50684:7875-7894 MS.gene020290:CDS 40.0%
AGATTAACATGGGAGCAATG+GGG - 50684:8857-8876 MS.gene020290:CDS 40.0%
AGCAGTGAATATGTTATCGC+CGG + 50684:7940-7959 MS.gene020290:intergenic 40.0%
AGCTTTACTAAGCAAGCAAG+TGG + 50684:8914-8933 MS.gene020290:intergenic 40.0%
ATGAGTATAGCTTTCTCCGT+TGG + 50684:7432-7451 MS.gene020290:intergenic 40.0%
CAGATGCTTGTAACATCTGT+GGG - 50684:6796-6815 MS.gene020290:CDS 40.0%
CGAATTCAACTCAAGAAGCA+TGG - 50684:8715-8734 MS.gene020290:CDS 40.0%
CTATACAGAGGAAGAGAGAA+TGG - 50684:8049-8068 MS.gene020290:CDS 40.0%
CTGTGGGAAAAAACACATCA+TGG - 50684:6812-6831 MS.gene020290:CDS 40.0%
CTTCCAATGATTCCCTTTGT+TGG + 50684:6241-6260 MS.gene020290:intergenic 40.0%
GACAAGTTAACCTCTTCGAT+TGG - 50684:6898-6917 MS.gene020290:CDS 40.0%
GACGATATCGGAACTTTCTT+TGG + 50684:8255-8274 MS.gene020290:intergenic 40.0%
GAGCAATGGGGAATTTGTAT+TGG - 50684:8869-8888 MS.gene020290:CDS 40.0%
GATATGAAGCTTGAGCTAGA+AGG + 50684:8583-8602 MS.gene020290:intergenic 40.0%
GATGTTGTGTCTCTCAAGAT+TGG - 50684:6622-6641 MS.gene020290:CDS 40.0%
GGAGAAAGCTATACTCATGT+GGG - 50684:7434-7453 MS.gene020290:CDS 40.0%
GGTAACTCACATGATGAGAA+AGG - 50684:6982-7001 MS.gene020290:CDS 40.0%
GGTATAAAAGAACATGGACC+AGG - 50684:6412-6431 MS.gene020290:CDS 40.0%
GTGCAGATGATATTTCGAGA+CGG - 50684:6260-6279 MS.gene020290:CDS 40.0%
GTGGGAAAAAACACATCATG+GGG - 50684:6814-6833 MS.gene020290:CDS 40.0%
GTTAACCTCTTCGATTGGAA+AGG - 50684:6903-6922 MS.gene020290:CDS 40.0%
TACAAAAAGCCACCACCAAA+AGG - 50684:6307-6326 MS.gene020290:CDS 40.0%
TATGGATACACTAGGTGCTT+TGG - 50684:8466-8485 MS.gene020290:CDS 40.0%
TATTGAGTCCTATCCCTTGT+TGG + 50684:7353-7372 MS.gene020290:intergenic 40.0%
TCAGATGCTTGTAACATCTG+TGG - 50684:6795-6814 MS.gene020290:CDS 40.0%
TCCACAGCTTTCTTAGTGTT+TGG + 50684:7879-7898 MS.gene020290:intergenic 40.0%
TGAGAGAACCATTCAAGGTA+TGG - 50684:7695-7714 MS.gene020290:CDS 40.0%
TGAGTATAGCTTTCTCCGTT+GGG + 50684:7431-7450 MS.gene020290:intergenic 40.0%
TGTTCTTCAAATCCTGATGG+TGG - 50684:8805-8824 MS.gene020290:CDS 40.0%
TTCTTAGTGTTTGGTCTGCA+TGG + 50684:7870-7889 MS.gene020290:intergenic 40.0%
TTGACATTGCTTGGTATCGT+TGG - 50684:7834-7853 MS.gene020290:CDS 40.0%
! CCCTATGGACAAACTTTTGA+TGG - 50684:8109-8128 MS.gene020290:CDS 40.0%
! GTCGTCTAAGATGACGATAT+CGG + 50684:8267-8286 MS.gene020290:intergenic 40.0%
! GTTCTTGAGTTGTTCCAACA+AGG - 50684:7336-7355 MS.gene020290:CDS 40.0%
! TGTAAAAGACCTTTTGGTGG+TGG + 50684:6319-6338 MS.gene020290:intergenic 40.0%
! TTCTGTTGTGAGTATCGTTG+CGG - 50684:7053-7072 MS.gene020290:CDS 40.0%
!! AACGAAGTGGTGTTGCTATA+AGG - 50684:7541-7560 MS.gene020290:CDS 40.0%
!! AGAGTGACCAAGTTTTGTCT+TGG - 50684:7267-7286 MS.gene020290:CDS 40.0%
!! ATTTCAGGTTCAGATCCTGA+TGG + 50684:7399-7418 MS.gene020290:intergenic 40.0%
!! GAAGATGGATTGACATTGCT+TGG - 50684:7825-7844 MS.gene020290:CDS 40.0%
!! TGAAATTTTAGGGAGCCCAA+CGG - 50684:7413-7432 MS.gene020290:CDS 40.0%
!!! AACTTTTGGTGCCATTGCAT+TGG + 50684:7319-7338 MS.gene020290:intergenic 40.0%
!!! AGAGCTCCTTTTTTGTTGTC+CGG - 50684:6748-6767 MS.gene020290:CDS 40.0%
!!! CTGTTGCAACTGTTTTAAGG+TGG - 50684:8297-8316 MS.gene020290:CDS 40.0%
!!! GTTGCAACTGTTTTAAGGTG+GGG - 50684:8299-8318 MS.gene020290:CDS 40.0%
AATGCTGGAGAAGTGGTTGA+AGG - 50684:8011-8030 MS.gene020290:CDS 45.0%
ACCTCTTCGATTGGAAAGGT+TGG - 50684:6907-6926 MS.gene020290:CDS 45.0%
ACTAGCAGCCATACCTTGAA+TGG + 50684:7706-7725 MS.gene020290:intergenic 45.0%
ACTCCGTTCTTCTTCGTCAA+GGG + 50684:7670-7689 MS.gene020290:intergenic 45.0%
ACTGAGTTTGGAGGAGTTGA+AGG - 50684:6190-6209 MS.gene020290:CDS 45.0%
AGTCCCTTGACGAAGAAGAA+CGG - 50684:7664-7683 MS.gene020290:CDS 45.0%
AGTCGATAAGATCCGAGTGA+TGG - 50684:8076-8095 MS.gene020290:CDS 45.0%
AGTGTCTATAAGCCTCCATC+AGG - 50684:7381-7400 MS.gene020290:CDS 45.0%
ATCCGGTTATTCGTTGCAAG+TGG - 50684:6675-6694 MS.gene020290:CDS 45.0%
CGGAGAAAGCTATACTCATG+TGG - 50684:7433-7452 MS.gene020290:CDS 45.0%
CTTTGGCACTAGCAACAGAA+AGG - 50684:8483-8502 MS.gene020290:CDS 45.0%
GAGTTGTTCCAACAAGGGAT+AGG - 50684:7342-7361 MS.gene020290:CDS 45.0%
GGAACTTTCTTTGGCGACTT+CGG + 50684:8246-8265 MS.gene020290:intergenic 45.0%
GGACTTTCTATGGGAATCCA+AGG - 50684:8218-8237 MS.gene020290:CDS 45.0%
GGGATAGGACTCAATACAAC+TGG - 50684:7357-7376 MS.gene020290:CDS 45.0%
GGTGATCAAATTCCAGCTGA+TGG - 50684:6643-6662 MS.gene020290:CDS 45.0%
GTCCACTTGCAACGAATAAC+CGG + 50684:6680-6699 MS.gene020290:intergenic 45.0%
GTTGGGCTCCCTAAAATTTC+AGG + 50684:7414-7433 MS.gene020290:intergenic 45.0%
TACTCCGTTCTTCTTCGTCA+AGG + 50684:7671-7690 MS.gene020290:intergenic 45.0%
TCATGCAAATGCTGGAGAAG+TGG - 50684:8004-8023 MS.gene020290:CDS 45.0%
TCCAACCTTTCCAATCGAAG+AGG + 50684:6911-6930 MS.gene020290:intergenic 45.0%
TTTGCGCCGGACAACAAAAA+AGG + 50684:6757-6776 MS.gene020290:intergenic 45.0%
! TTTGGAGGAGTTGAAGGTGT+TGG - 50684:6196-6215 MS.gene020290:CDS 45.0%
!! GAAGGTGTTGGACATGTTCT+TGG - 50684:6208-6227 MS.gene020290:CDS 45.0%
!! TCGAAGAGGTTAACTTGTCG+AGG + 50684:6897-6916 MS.gene020290:intergenic 45.0%
AAAGAACATGGACCAGGGGA+AGG - 50684:6418-6437 MS.gene020290:CDS 50.0%
ACAACAGCGTTCACGTGCAT+TGG - 50684:7577-7596 MS.gene020290:CDS 50.0%
AGAGTGAGTGTCACAGCCAA+TGG + 50684:7120-7139 MS.gene020290:intergenic 50.0%
AGCGTTCACGTGCATTGGAA+AGG - 50684:7582-7601 MS.gene020290:CDS 50.0%
GATGGCAAGATCATCCCCTA+TGG - 50684:8094-8113 MS.gene020290:CDS 50.0%
GGGATGATCTTGCCATCACT+CGG + 50684:8091-8110 MS.gene020290:intergenic 50.0%
GTGGAAACTTGCAAAGCTGC+AGG - 50684:7894-7913 MS.gene020290:CDS 50.0%
GTGGACGAATCTAGCATGAC+AGG - 50684:6694-6713 MS.gene020290:CDS 50.0%
TCAGGTTCAGATCCTGATGG+AGG + 50684:7396-7415 MS.gene020290:intergenic 50.0%
TCCTTAGCAGTTCCACCATC+AGG + 50684:8820-8839 MS.gene020290:intergenic 50.0%
TGGCAGATCATGCTATGGTG+AGG - 50684:7163-7182 MS.gene020290:CDS 50.0%
TTGGTCTGCATGGATCCTTG+AGG + 50684:7860-7879 MS.gene020290:intergenic 50.0%
TTGTCGAGGCGTGCTTGTAA+CGG + 50684:6883-6902 MS.gene020290:intergenic 50.0%
! TCCATCGACAACTTTTGCGC+CGG + 50684:6770-6789 MS.gene020290:intergenic 50.0%
!! GTTTGTGCTGGTCTTTCCCT+TGG - 50684:6385-6404 MS.gene020290:CDS 50.0%
!! TCCTGATGGTGGAACTGCTA+AGG - 50684:8816-8835 MS.gene020290:CDS 50.0%
!!! GCTGGTCTTTCCCTTGGTTT+TGG - 50684:6391-6410 MS.gene020290:CDS 50.0%
AACATGGACCAGGGGAAGGT+TGG - 50684:6422-6441 MS.gene020290:CDS 55.0%
ACAGCCAATGGCAAACCCTC+AGG + 50684:7108-7127 MS.gene020290:intergenic 55.0%
CAATGGCAAACCCTCAGGGA+TGG + 50684:7103-7122 MS.gene020290:intergenic 55.0%
CAGCCAATGGCAAACCCTCA+GGG + 50684:7107-7126 MS.gene020290:intergenic 55.0%
CATCCCTGAGGGTTTGCCAT+TGG - 50684:7101-7120 MS.gene020290:CDS 55.0%
CCTTCATACCAACCTTCCCC+TGG + 50684:6433-6452 MS.gene020290:intergenic 55.0%
CTTTGGCGACTTCGGTTCCT+TGG + 50684:8238-8257 MS.gene020290:intergenic 55.0%
GGTCATGTAGTTGCGGTCAC+AGG - 50684:8152-8171 MS.gene020290:CDS 55.0%
TCCGGCGCAAAAGTTGTCGA+TGG - 50684:6766-6785 MS.gene020290:CDS 55.0%
TGCGGCTGCAGTCACTATTG+TGG - 50684:7071-7090 MS.gene020290:CDS 55.0%
! GCTTGGTATCGTTGGCCTCA+AGG - 50684:7842-7861 MS.gene020290:CDS 55.0%
! TCGAGACGGCTCGAGTTGTT+CGG - 50684:6274-6293 MS.gene020290:CDS 55.0%
!! CCAGGGGAAGGTTGGTATGA+AGG - 50684:6430-6449 MS.gene020290:CDS 55.0%
!! GGGGAAGGTTGGTATGAAGG+TGG - 50684:6433-6452 MS.gene020290:CDS 55.0%
GTAGTTGCGGTCACAGGCGA+CGG - 50684:8158-8177 MS.gene020290:CDS 60.0%
GTGGTCGTTGCCATCCCTGA+GGG - 50684:7090-7109 MS.gene020290:CDS 60.0%
TGTGGTCGTTGCCATCCCTG+AGG - 50684:7089-7108 MS.gene020290:CDS 60.0%
! AGAGGCGCGGTTCGACCTAT+TGG + 50684:8536-8555 MS.gene020290:intergenic 60.0%


Chromosome Type Strat End Strand Name
50684 gene 6169 9015 6169 ID=MS.gene020290
50684 mRNA 6169 9015 6169 ID=MS.gene020290.t1;Parent=MS.gene020290
50684 exon 6169 9015 6169 ID=MS.gene020290.t1.exon1;Parent=MS.gene020290.t1
50684 CDS 6169 9015 6169 ID=cds.MS.gene020290.t1;Parent=MS.gene020290.t1
Gene Sequence

>MS.gene020290

GACAAAAACTTGAAGTCCTTAACTGAGTTTGGAGGAGTTGAAGGTGTTGGACATGTTCTTGGAACATTTCCAACAAAGGGAATCATTGGAAGTGCAGATGATATTTCGAGACGGCTCGAGTTGTTCGGTTCAAATACTTACAAAAAGCCACCACCAAAAGGTCTTTTACATTTTGTGCTTGAAGCTTTCAATGATACAACAATTATCATTCTTCTTGTTTGTGCTGGTCTTTCCCTTGGTTTTGGTATAAAAGAACATGGACCAGGGGAAGGTTGGTATGAAGGTGGAAGTATATTTCTAGCAGTTTTTCTTGTTGTGGTTGTAAGTGCACTAAGCAATTTTAGACAAGAAAGACAGTTTCACAAATTGTCTAAGATAAGCAACAATATCAAAGTTGAAGTTGTGAGAAATGGAAGGCCTCAACAGATATCAATTTTTGATGTTCTTGTGGGAGATGTTGTGTCTCTCAAGATTGGTGATCAAATTCCAGCTGATGGAGTATTTTTATCCGGTTATTCGTTGCAAGTGGACGAATCTAGCATGACAGGTGAGAGCGACCATGTAGAGATTGAGCCTTTAAGAGCTCCTTTTTTGTTGTCCGGCGCAAAAGTTGTCGATGGATATGCTCAGATGCTTGTAACATCTGTGGGAAAAAACACATCATGGGGACAAATGATGAGCTCGATATCGCGAGACACTAATGAAAGAACGCCGTTACAAGCACGCCTCGACAAGTTAACCTCTTCGATTGGAAAGGTTGGACTTGCAGTAGCGTTTCTTGTTCTTCTAGTGTTGTTAATTCGGTATTTCACCGGTAACTCACATGATGAGAAAGGGAATAAGGAATTTCGAGGAAGCAAAACCGATATAAACGATGTTATGAATTCTGTTGTGAGTATCGTTGCGGCTGCAGTCACTATTGTGGTCGTTGCCATCCCTGAGGGTTTGCCATTGGCTGTGACACTCACTCTTGCTTACTCCATGAAAAGAATGATGGCAGATCATGCTATGGTGAGGAAACTTTCAGCTTGTGAAACTATGGGATCAGCAACAGTTATCTGCACTGATAAAACAGGTACCTTGACATTGAATCAAATGAGAGTGACCAAGTTTTGTCTTGGTCTTGAAAATATTATTGAAAACTTTTCCAATGCAATGGCACCAAAAGTTCTTGAGTTGTTCCAACAAGGGATAGGACTCAATACAACTGGTAGTGTCTATAAGCCTCCATCAGGATCTGAACCTGAAATTTTAGGGAGCCCAACGGAGAAAGCTATACTCATGTGGGCAGTATTAGATTTAGGTATGGACATGGATGAAATGAAACAGAAGCATAAAGTCCTTCATGTTGAAACATTTAACTCAGAAAAGAAACGAAGTGGTGTTGCTATAAGGAAAGAGAACGACGACAACAGCGTTCACGTGCATTGGAAAGGAGCTGCAGAGATGATACTTGCAATGTGTACAAACTATATTGATAGTAATGGCGTGAGGAAGTCCCTTGACGAAGAAGAACGGAGTAAAATTGAGAGAACCATTCAAGGTATGGCTGCTAGTAGTTTAAGATGTATTGCTTTTGCTCACACGGAAATTTCAGATTCCGAAGATATTGATTATATGATCAAAAGGGAGAAAAAATCACATCAAATGCTTAGAGAAGATGGATTGACATTGCTTGGTATCGTTGGCCTCAAGGATCCATGCAGACCAAACACTAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATCACCGGCGATAACATATTCACTGCTAAGGCAATAGCAATAGAATGTGGAATATTAGATTCTAATAATGATCATGCAAATGCTGGAGAAGTGGTTGAAGGTGTTGAATTCAGAAACTATACAGAGGAAGAGAGAATGGAAAAAGTCGATAAGATCCGAGTGATGGCAAGATCATCCCCTATGGACAAACTTTTGATGGTGCAATGCTTAAGAAAGAAAGGTCATGTAGTTGCGGTCACAGGCGACGGCACAAACGATGCACCTGCCTTAAAAGAAGCTGATATAGGACTTTCTATGGGAATCCAAGGAACCGAAGTCGCCAAAGAAAGTTCCGATATCGTCATCTTAGACGACAACTTCAATTCTGTTGCAACTGTTTTAAGGTGGGGAAGATGTGTTTACAACAACATCCAGAAATTTATTCAGTTTCAACTAACAGTGAATGTTGCAGCACTTGTGATAAACTTTATTGCAGCAGTTTCTTCTGGTGATGTTCCTTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGATACACTAGGTGCTTTGGCACTAGCAACAGAAAGGCCTACAAAAGAGTTAATGAAGAAAAAGCCAATAGGTCGAACCGCGCCTCTTATTACAAACATTATGTGGAGAAACCTTCTAGCTCAAGCTTCATATCAGATTGCAGTTCTTCTGATTATGCAGTTTTATGGAAAATCAATCTTCAATGTAAGTAAGGAGGTAAAGGATACACTAATTTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAATTCAACTCAAGAAGCATGGAGAAACTTTATGTATTTGAAGGGATTCTTAAAAACCACTTGTTTCTTGGAATTATTGGGATTACTATTGTTCTTCAAATCCTGATGGTGGAACTGCTAAGGAAGTTTGCTGATACAGAAAGATTAACATGGGAGCAATGGGGAATTTGTATTGGAATTGCAGTTGTTTCATGGCCACTTGCTTGCTTAGTAAAGCTCATACCTGTTTCAGATAAACCTTCCTTCAGTTATACTAAGTGGGTTAAATTATTAGTCTACAAGATTAAGAATGCTTTTTAA

Protein sequence

>MS.gene020290.t1

DKNLKSLTEFGGVEGVGHVLGTFPTKGIIGSADDISRRLELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGPGEGWYEGGSIFLAVFLVVVVSALSNFRQERQFHKLSKISNNIKVEVVRNGRPQQISIFDVLVGDVVSLKIGDQIPADGVFLSGYSLQVDESSMTGESDHVEIEPLRAPFLLSGAKVVDGYAQMLVTSVGKNTSWGQMMSSISRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSHDEKGNKEFRGSKTDINDVMNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFCLGLENIIENFSNAMAPKVLELFQQGIGLNTTGSVYKPPSGSEPEILGSPTEKAILMWAVLDLGMDMDEMKQKHKVLHVETFNSEKKRSGVAIRKENDDNSVHVHWKGAAEMILAMCTNYIDSNGVRKSLDEEERSKIERTIQGMAASSLRCIAFAHTEISDSEDIDYMIKREKKSHQMLREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIAIECGILDSNNDHANAGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMKKKPIGRTAPLITNIMWRNLLAQASYQIAVLLIMQFYGKSIFNVSKEVKDTLIFNTFVLCQVFNEFNSRSMEKLYVFEGILKNHLFLGIIGITIVLQILMVELLRKFADTERLTWEQWGICIGIAVVSWPLACLVKLIPVSDKPSFSYTKWVKLLVYKIKNAF