AlfalfaGEDB | MS.gene015253

M. sativa cultivar XinJiangDaYe / MS.gene015253

KEGG: K01537
GO: GO:0000166 GO:0003674 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008144 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015662 GO:0016020 GO:0016021 GO:0017076 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030554 GO:0031224 GO:0032553 GO:0032555 GO:0032559 GO:0034220 GO:0035639 GO:0036094 GO:0042625 GO:0042626 GO:0043167 GO:0043168 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0097159 GO:0097367 GO:0098655 GO:0098660 GO:0098662 GO:0110165 GO:1901265 GO:1901363
PFAM: PF00122.23 PF00689.24 PF00690.29 PF12515.11 PF13246.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015253.t1	XP_003611588.2	99.2	1014	8	0	2	1015	1	1014	0.00E+00	1961.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015253.t1	O81108	82.3	1015	178	2	2	1015	1	1014	0.0e+00	1664.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015253.t1	Q8L8A0	99.2	1014	8	0	2	1015	1	1014	0.0e+00	1961.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007942	MS.gene015253	PPI
MS.gene015066	MS.gene015253	PPI
MS.gene015253	MS.gene012862	PPI
MS.gene015253	MS.gene060522	PPI
MS.gene015253	MS.gene22490	PPI
MS.gene015253	MS.gene43381	PPI
MS.gene015253	MS.gene56163	PPI
MS.gene015253	MS.gene93286	PPI
MS.gene015253	MS.gene030826	PPI
MS.gene015253	MS.gene053147	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene015253.t1	MTR_5g015590	99.211	1014	8	0	2	1015	1	1014	2063
MS.gene015253.t1	MTR_5g015590	99.146	937	8	0	2	938	1	937	1907
MS.gene015253.t1	MTR_4g096990	84.122	1014	159	1	2	1015	1	1012	1749
MS.gene015253.t1	MTR_5g015590	99.163	836	7	0	2	837	1	836	1696
MS.gene015253.t1	MTR_3g103070	79.646	1017	203	3	2	1015	1	1016	1638
MS.gene015253.t1	MTR_5g015590	98.974	780	8	0	2	781	1	780	1583
MS.gene015253.t1	MTR_3g103070	81.451	841	153	2	177	1015	1	840	1389
MS.gene015253.t1	MTR_4g008650	64.577	1005	351	3	13	1015	10	1011	1333
MS.gene015253.t1	MTR_4g043690	61.644	1022	380	7	2	1015	1	1018	1256
MS.gene015253.t1	MTR_8g090125	63.958	960	337	7	61	1015	14	969	1256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene015253.t1	AT4G37640	82.266	1015	178	2	2	1015	1	1014	1729
MS.gene015253.t1	AT2G22950	81.890	1016	181	3	2	1015	1	1015	1702
MS.gene015253.t1	AT1G27770	79.056	1017	210	2	2	1015	1	1017	1638
MS.gene015253.t1	AT1G27770	79.056	1017	210	2	2	1015	1	1017	1638
MS.gene015253.t1	AT1G27770	79.679	935	188	1	83	1015	20	954	1518
MS.gene015253.t1	AT3G57330	64.407	1003	350	4	13	1015	10	1005	1302
MS.gene015253.t1	AT2G41560	63.347	1004	362	4	13	1015	10	1008	1285
MS.gene015253.t1	AT3G57330	65.026	955	327	4	61	1015	3	950	1256
MS.gene015253.t1	AT2G41560	64.984	911	313	4	106	1015	1	906	1202
MS.gene015253.t1	AT2G41560	64.984	911	313	4	106	1015	1	906	1202

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Find 233 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTGGAACTGGAAT+GGG	0.344186	5.4:+9158193	MS.gene015253:CDS
AAAAGTTGAACAGCAGTGAG+GGG	0.673145	5.4:-9159942	None:intergenic
AAACACAACACCTCTCACTC+TGG	0.603007	5.4:+9160510	MS.gene015253:CDS
AAACTCCAATATTGCAGTCT+CGG	0.520797	5.4:-9158619	None:intergenic
AAACTCTTCTCTCTGAATTC+AGG	0.370741	5.4:-9159164	None:intergenic
AAACTTCTGGAACTGGAATG+GGG	0.597552	5.4:+9158194	MS.gene015253:CDS
AAAGACGACCAATAAGATAC+TGG	0.462954	5.4:-9157665	None:intergenic
AAAGTCAAGCTAAAAGCTTC+TGG	0.256142	5.4:+9157512	MS.gene015253:CDS
AAATACCATGGTAAGATTGA+TGG	0.436302	5.4:+9157388	MS.gene015253:CDS
AAATCTGCGGTGATGAATTA+GGG	0.353096	5.4:+9157332	MS.gene015253:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACCATGGTAAGATTGA+TGG	+	chr5.4:9157388-9157407	MS.gene015253:CDS	30.0%
AACTAGATAAGCTCAAAATC+TGG	-	chr5.4:9156696-9156715	None:intergenic	30.0%
AACTTCAACAAGAAAACTTC+TGG	+	chr5.4:9158181-9158200	MS.gene015253:CDS	30.0%
AAGTGAAATTGAAGGAAAGA+GGG	-	chr5.4:9156604-9156623	None:intergenic	30.0%
AATCCTTGAACTGTAATGAT+TGG	-	chr5.4:9157714-9157733	None:intergenic	30.0%
AATTGTTGCCAGTATCTTAT+TGG	+	chr5.4:9157657-9157676	MS.gene015253:CDS	30.0%
ACAATCACTGTATCAGTTTA+TGG	+	chr5.4:9160103-9160122	MS.gene015253:CDS	30.0%
ACTATATGTAGTGACAAAAC+TGG	+	chr5.4:9158396-9158415	MS.gene015253:CDS	30.0%
ATAACAGTAAGAATGGTTAC+AGG	+	chr5.4:9159065-9159084	MS.gene015253:CDS	30.0%
ATATGGTTTCTTCAGTCAAA+AGG	+	chr5.4:9160128-9160147	MS.gene015253:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	9155691	9160609	9155691	ID=MS.gene015253
chr5.4	mRNA	9155691	9160609	9155691	ID=MS.gene015253.t1;Parent=MS.gene015253
chr5.4	exon	9155691	9155870	9155691	ID=MS.gene015253.t1.exon1;Parent=MS.gene015253.t1
chr5.4	CDS	9155691	9155870	9155691	ID=cds.MS.gene015253.t1;Parent=MS.gene015253.t1
chr5.4	exon	9157146	9157200	9157146	ID=MS.gene015253.t1.exon2;Parent=MS.gene015253.t1
chr5.4	CDS	9157146	9157200	9157146	ID=cds.MS.gene015253.t1;Parent=MS.gene015253.t1
chr5.4	exon	9157278	9159220	9157278	ID=MS.gene015253.t1.exon3;Parent=MS.gene015253.t1
chr5.4	CDS	9157278	9159220	9157278	ID=cds.MS.gene015253.t1;Parent=MS.gene015253.t1
chr5.4	exon	9159339	9159497	9159339	ID=MS.gene015253.t1.exon4;Parent=MS.gene015253.t1
chr5.4	CDS	9159339	9159497	9159339	ID=cds.MS.gene015253.t1;Parent=MS.gene015253.t1
chr5.4	exon	9159629	9159800	9159629	ID=MS.gene015253.t1.exon5;Parent=MS.gene015253.t1
chr5.4	CDS	9159629	9159800	9159629	ID=cds.MS.gene015253.t1;Parent=MS.gene015253.t1
chr5.4	exon	9159934	9160232	9159934	ID=MS.gene015253.t1.exon6;Parent=MS.gene015253.t1
chr5.4	CDS	9159934	9160232	9159934	ID=cds.MS.gene015253.t1;Parent=MS.gene015253.t1
chr5.4	exon	9160370	9160609	9160370	ID=MS.gene015253.t1.exon7;Parent=MS.gene015253.t1
chr5.4	CDS	9160370	9160609	9160370	ID=cds.MS.gene015253.t1;Parent=MS.gene015253.t1

Gene Sequence

>MS.gene015253

ATGATGGAGAATTATTTGCAAGAGAATTTTGGAGGAGTGAAGTCAAAAAACTCATCTGAAGAAGCACTTCGAAGATGGAGAGATGTTTGTGGATTCGTCAAGAATCCCAAAAGACGTTTTCGTTTCACTGCCAATCTCGACAAGAGAGGCGAAGCTGCTGCTATGCGTCGTACCAATCAGGTTTCTATTTTTTATTATTCAACACATGTTAGATAAGATAGCTCCGCCAATTATATTTTAGATAGATCAATTATTAATTTCTTCTTATTATTAATTGGTTACTACATTATTATATTTCAAAGATGCTTTTCCATTGGTTGTTCTTAATTTATTTTTTTTATTTTTGTATTGTTTACGCAATCATATTTATTTTTTAATTTATACTGCACTGGTCAACATTTATGAAAAGAACATTTGCGCAATATCACATTTATTTGTGTGTATTATTTGTCCTGTTGTTATTGCTTGGACTATTAGGCTGTACATGAATCTATGGGGTCCACCGCAGACCGGTAGTTAGAAATTATTTGCAACTTCAACGATGATAGTCTGGTATTCATGTTCCTCTGTGTTGTCACGCCTGAGACGATGACTTGATCCGTGTCAATTTGACAAAAATAAGGGAAGCGAATGCGTGTCTTAAAACTCAACTCATTTGATTTTCCTTGTTTTTGCCGAATAGACAAAGATTAGATCATCGTCTCGGATGTGTTGGAGGGGAAAACTTCTACTTCTACTTCCAAGGAACGTCGATCATTGTTAGAGTTTCGAGTGGTTTCTAAGTACTAGTCAATTGTGGTATAGGCTCTAACAAATATTTGTGGCTTCTAATTGGTTTTCAAAAATTCAAATTTGAACCAAGATACCATCGAGACTTGTTCTCGGCTCTGGCATTACCCTCTTTCCTTCACCCTCTTTCCTTCAATTTCACTTCACGTTTGTAAAGTCAAAGTCTGAAATCTGAACACAAGTATGTATTTGACTCTTAAGAATTTGTATATTCCAGATTTTGAGCTTATCTAGTTAATGGTTTAGCAATTAAAATGTTGCTACACTCCATAAAGAAGAACACAGGATGAGCATAAATGCATAAATGAGCTAATTTGATAATTTTTATGGGGTATGGATGAAATTCAAACATTAAATGCACTTTACCCGTACAAGTTATAAAACAACTTTTTGAAATAATTATAAGCATCAGATTAGAACCAACATTTTGATTACATGTCATCCGCAGCTTCTCTATCTAATGCGGTTTCACAAAACTCTGTTATCACGTATCACCCACACGCATGTGCTCATGTACTGTATGAAAACTATTTTTCTTAATAATGGATTTGAGAATGCTTATCAAGTACTATAAACAGTGATTCCTCAGTTTTTTCTTCATTACATAGAATGTGACATACTTCATTTTTTATTTTTCAAAAGACTTATTCTCTCTCCTTACTGCAGGAGAAACTGAGGGTGGCAGTTTTGGTTTCTAAAGCAGCATTTCAATTTATCCAAGGTAAGTTTCTTCCACGTTATTCTCATGGCTTAAAATTATTAGAGCCAATATATTTACTTTTGCTCATATTCACACAGGCACGAAACCAAGCGATTACAAAGTGCCGGAGGAAGTTAAAGATGCAGGTTTTCAAATCTGCGGTGATGAATTAGGGTCTATTGTTGAAGGCCATGATGTGAAGAAGTTGAAATACCATGGTAAGATTGATGGCATTGTAGAAAAACTTTCTACATCAGCTACCGAGGGGATTAGCAATGATACTGATTTGCTTGATAAGAGACAACAGATATATGGAATCAATAAATTCACTGAAAGTCAAGCTAAAAGCTTCTGGGTTTTTGTTTGGGAAGCACTTCAAGACATGACTCTCATGATACTTGGAGTGTGTGCTCTTGTGTCACTGATAGTTGGCATTGCAACTGAAGGATGGCCTAAGGGTGCTCATGATGGTCTTGGAATTGTTGCCAGTATCTTATTGGTCGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAGTTCAAGGATTTGGACAAGGAGAAGAAGAAAATTTCCATTCAGGTCACAAGAAATGGATATAGGCAGAAAATGTCTATATATGAATTACTTCCTGGTGATATAGTGCATCTTGCCATTGGTGACCAAGTGCCTGCTGATGGACTCTTTGTTTCAGGATTTTCTCTGTTGATTGATGAGTCAAGTTTAACAGGAGAGAGTGAGCCTGTGGTGGTGAACACTGAAAATCCATTTCTTCTTTCAGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGGTTACCACAGTTGGAATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGTGATGATGAAACCCCATTACAAGTGAAACTTAATGGAGTGGCAACCATTATTGGGAAAATAGGGTTATTCTTTGCAATTGTTACTTTTGCAGTTCTTGTGCAAGGACTTGTGAGCCTTAAACTTCAACAAGAAAACTTCTGGAACTGGAATGGGGATGATGCTTTGGAGATGTTGGAGTACTTTGCGATTGCAGTTACCATCGTTGTTGTTGCTGTTCCAGAAGGGCTTCCATTAGCTGTGACATTGAGCCTTGCATTTGCTATGAAAAAAATGATGAATGACAAGGCCCTTGTCCGAAATTTGGCAGCTTGTGAGACAATGGGATCAGCCACAACTATATGTAGTGACAAAACTGGGACACTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGCATGAAAAGCAAGGAAGTAAGCAACAAAACTTCTAGTTTGAGCTCTGAACTCCCAGAATCTGTTGTGAAACTGCTGCAACAGTCAATATTTAACAACACTGGAGGTGAGGTTGTGGTTAACAAACAAGGGAAACACGAAATTTTAGGGACACCAACCGAGACTGCAATATTGGAGTTTGGCTTATCATTAGGTGGTGATTTTCAAGGAGAGAGACAAGCATGCAAACTTGTTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGAATGGGTGCAGTAGTGGAGCTCCCTAGTGGAGGTTTAAGAGCTCACTGTAAAGGCGCTTCTGAAATAGTTCTTGCTGCTTGTGACAAAGTTCTCAATTCAAACGGCGAGGTTGTCCCACTTGATGAAGAATCAACTAATCATCTCACTACTACAATAAACCAGTTTGCTAATGAGACACTTAGAACTTTATGCCTTGCCTATATGGAATTGGAAAATGGGTTCTCTGCTGAAGACACCATTCCTGTTACTGGATTCACTTGTATAGGAGTTGTTGGTATCAAAGATCCCGTTCGTCCCGGTGTTAAGGAGTCTGTAGCTCTTTGTCGTTCAGCTGGAATAACAGTAAGAATGGTTACAGGTGACAATATTAATACTGCAAAGGCTATAGCTAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAAGGTCCTGAATTCAGAGAGAAGAGTTTGGAAGAGTTGCTTGAACTGATTCCCAAAATTCAGGTACTTCTTACCTTCTTTTATGCACTACACCTTGATTGCTTCATTACCAATCTATCTTACAGTTACAGATGTTTCATGGTGGATCCTTTCAGTAACACAAATGTTTAATTCCTTTTAGGTTATGGCTCGATCCTCACCTTTAGACAAGCATACATTGGTGAGACACCTTCGCACAACGTTTGGAGAAGTTGTAGCTGTAACTGGTGATGGGACAAATGATGCACCAGCCCTTCATGAAGCAGACATTGGACTTGCCATGGGTATTGCTGGAACTGAGGTGAGTCTCAAATATCTGAAACCAAAATAAAACAAAAGATGATGGGCACTTGTGCTACATTTTAGTCATTGATTAATTTTGTATTGCAATGAGAATACAAGAGTCTGGCTAATTACGTATTATGTGTGCAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACAATAGTAACCGTGGCCAAATGGGGGCGTTCTGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACGGTTAATATCGTTGCTTTAATAGTGAACTTTACATCAGCCTGCTTGACAGGTTAGAAATTTAGATTAATTTGTCTAGTTTGATTATGGACTTCACATCATTTTGCACGATATGATATAAATTTAGAAACATTTTATTCCTTGTACAACTTTATCTAACAATATAATTTGCATTTTGTCTTCAGGAACTGCTCCCCTCACTGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCACTTGCAACTGAACCTCCAAATGATGATTTAATGAAGCGTGCACCTGTTGGAAGAAAAGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTGGGACAATCACTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAAAGGAAAAACCATCTTTTCGCTTGATGGCCCCAATTCTGATCTAGTCTTAAACACACTTATCTTCAACGCATTTGTATTCTGCCAGGTACTTTTTCTGAAAAGGCCGAACAACTTGTTTACGAATAATAGTTGAGTCCATGTCCAATTAGGAAAGATCAAGTTAAAAGCATATGTAACGGTTGTAATGTGGCTTACAAGTTTTGGGTTGGTCTGGTTTTGCAGGTTTTCAATGAGATAAACTCACGTGAGATGGAGAAAATTAATGTTTTTAAAGGCATATTGGATAACTATGTCTTCGTGGGTGTGATCAGTGCTACAATCTTCTTTCAAATCATAATCGTGGAGTACTTGGGAACCTTTGCAAACACAACACCTCTCACTCTGGTACAGTGGTTCTTCTGCTTATTCGTTGGATTTATGGGAATGCCTATTGCTGCTCGCTTAAAGAAGCTCCCCGTCTAA

Protein sequence

>MS.gene015253.t1

MMENYLQENFGGVKSKNSSEEALRRWRDVCGFVKNPKRRFRFTANLDKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGTKPSDYKVPEEVKDAGFQICGDELGSIVEGHDVKKLKYHGKIDGIVEKLSTSATEGISNDTDLLDKRQQIYGINKFTESQAKSFWVFVWEALQDMTLMILGVCALVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSLLIDESSLTGESEPVVVNTENPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIVTFAVLVQGLVSLKLQQENFWNWNGDDALEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMKSKEVSNKTSSLSSELPESVVKLLQQSIFNNTGGEVVVNKQGKHEILGTPTETAILEFGLSLGGDFQGERQACKLVKVEPFNSTKKRMGAVVELPSGGLRAHCKGASEIVLAACDKVLNSNGEVVPLDEESTNHLTTTINQFANETLRTLCLAYMELENGFSAEDTIPVTGFTCIGVVGIKDPVRPGVKESVALCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSLEELLELIPKIQVMARSSPLDKHTLVRHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNIVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRAPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSKGKTIFSLDGPNSDLVLNTLIFNAFVFCQVFNEINSREMEKINVFKGILDNYVFVGVISATIFFQIIIVEYLGTFANTTPLTLVQWFFCLFVGFMGMPIAARLKKLPV