AlfalfaGEDB | MS.gene20293

M. sativa cultivar XinJiangDaYe / MS.gene20293

KEGG: K01537
GO: GO:0000166 GO:0003674 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008144 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015662 GO:0016020 GO:0016021 GO:0017076 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030554 GO:0031224 GO:0032553 GO:0032555 GO:0032559 GO:0034220 GO:0035639 GO:0036094 GO:0042625 GO:0042626 GO:0043167 GO:0043168 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0097159 GO:0097367 GO:0098655 GO:0098660 GO:0098662 GO:0110165 GO:1901265 GO:1901363
PFAM: PF00122.23 PF00689.24 PF00690.29 PF12515.11 PF13246.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20293.t1	XP_003611588.2	99.3	1014	7	0	2	1015	1	1014	0.00E+00	1962.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20293.t1	O81108	82.4	1015	177	2	2	1015	1	1014	0.0e+00	1665.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20293.t1	Q8L8A0	99.3	1014	7	0	2	1015	1	1014	0.0e+00	1962.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050669	MS.gene20293	0.813915	2.01E-51	-1.69E-46
MS.gene051837	MS.gene20293	0.807072	6.04E-50	-1.69E-46
MS.gene052016	MS.gene20293	0.830165	3.42E-55	-1.69E-46
MS.gene054617	MS.gene20293	0.824254	8.92E-54	-1.69E-46
MS.gene057422	MS.gene20293	0.806662	7.38E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene015066	MS.gene20293	PPI
MS.gene018527	MS.gene20293	PPI
MS.gene022896	MS.gene20293	PPI
MS.gene067298	MS.gene20293	PPI
MS.gene20293	MS.gene018209	PPI
MS.gene20293	MS.gene022896	PPI
MS.gene20293	MS.gene36784	PPI
MS.gene20293	MS.gene99863	PPI
MS.gene20293	MS.gene061795	PPI
MS.gene20293	MS.gene37489	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene20293.t1	MTR_5g015590	99.310	1014	7	0	2	1015	1	1014	2066
MS.gene20293.t1	MTR_5g015590	99.146	937	8	0	2	938	1	937	1907
MS.gene20293.t1	MTR_4g096990	84.221	1014	158	1	2	1015	1	1012	1750
MS.gene20293.t1	MTR_5g015590	99.163	836	7	0	2	837	1	836	1697
MS.gene20293.t1	MTR_3g103070	79.744	1017	202	3	2	1015	1	1016	1639
MS.gene20293.t1	MTR_5g015590	98.974	780	8	0	2	781	1	780	1583
MS.gene20293.t1	MTR_3g103070	81.570	841	152	2	177	1015	1	840	1390
MS.gene20293.t1	MTR_4g008650	64.677	1005	350	3	13	1015	10	1011	1333
MS.gene20293.t1	MTR_4g043690	61.742	1022	379	7	2	1015	1	1018	1257
MS.gene20293.t1	MTR_8g090125	64.062	960	336	7	61	1015	14	969	1256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene20293.t1	AT4G37640	82.365	1015	177	2	2	1015	1	1014	1729
MS.gene20293.t1	AT2G22950	81.988	1016	180	3	2	1015	1	1015	1703
MS.gene20293.t1	AT1G27770	79.154	1017	209	2	2	1015	1	1017	1640
MS.gene20293.t1	AT1G27770	79.154	1017	209	2	2	1015	1	1017	1640
MS.gene20293.t1	AT1G27770	79.786	935	187	1	83	1015	20	954	1519
MS.gene20293.t1	AT3G57330	64.506	1003	349	4	13	1015	10	1005	1303
MS.gene20293.t1	AT2G41560	63.347	1004	362	4	13	1015	10	1008	1286
MS.gene20293.t1	AT3G57330	65.131	955	326	4	61	1015	3	950	1256
MS.gene20293.t1	AT2G41560	64.984	911	313	4	106	1015	1	906	1202
MS.gene20293.t1	AT2G41560	64.984	911	313	4	106	1015	1	906	1202

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Find 233 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTGGAACTGGAAT+GGG	0.344186	5.1:+8040804	MS.gene20293:CDS
AAAAGTTGAACAGCAGTGAG+GGG	0.673145	5.1:-8042553	None:intergenic
AAACACAACACCTCTCACTC+TGG	0.603007	5.1:+8043121	MS.gene20293:CDS
AAACTCCAATATTGCAGTCT+CGG	0.520797	5.1:-8041230	None:intergenic
AAACTCTTCTCTCTGAATTC+AGG	0.370741	5.1:-8041775	None:intergenic
AAACTTCTGGAACTGGAATG+GGG	0.597552	5.1:+8040805	MS.gene20293:CDS
AAAGACGACCAATAAGATAC+TGG	0.462954	5.1:-8040276	None:intergenic
AAAGTCAAGCTAAAAGCTTC+TGG	0.256142	5.1:+8040123	MS.gene20293:CDS
AAATACCATGGTAAGATTGA+TGG	0.436302	5.1:+8039999	MS.gene20293:CDS
AAATCTGCGGTGATGAATTA+GGG	0.353096	5.1:+8039943	MS.gene20293:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACCATGGTAAGATTGA+TGG	+	chr5.1:8039999-8040018	MS.gene20293:CDS	30.0%
AACTAGATAAGCTCAAAATC+TGG	-	chr5.1:8039307-8039326	None:intergenic	30.0%
AACTTCAACAAGAAAACTTC+TGG	+	chr5.1:8040792-8040811	MS.gene20293:CDS	30.0%
AAGTGAAATTGAAGGAAAGA+GGG	-	chr5.1:8039215-8039234	None:intergenic	30.0%
AATCCTTGAACTGTAATGAT+TGG	-	chr5.1:8040325-8040344	None:intergenic	30.0%
AATTGTTGCCAGTATCTTAT+TGG	+	chr5.1:8040268-8040287	MS.gene20293:CDS	30.0%
ACAATCACTGTATCAGTTTA+TGG	+	chr5.1:8042714-8042733	MS.gene20293:CDS	30.0%
ACTATATGTAGTGACAAAAC+TGG	+	chr5.1:8041007-8041026	MS.gene20293:CDS	30.0%
ATAACAGTAAGAATGGTTAC+AGG	+	chr5.1:8041676-8041695	MS.gene20293:CDS	30.0%
ATATGGTTTCTTCAGTCAAA+AGG	+	chr5.1:8042739-8042758	MS.gene20293:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	8038311	8043220	8038311	ID=MS.gene20293
chr5.1	mRNA	8038311	8043220	8038311	ID=MS.gene20293.t1;Parent=MS.gene20293
chr5.1	exon	8038311	8038490	8038311	ID=MS.gene20293.t1.exon1;Parent=MS.gene20293.t1
chr5.1	CDS	8038311	8038490	8038311	ID=cds.MS.gene20293.t1;Parent=MS.gene20293.t1
chr5.1	exon	8039757	8039811	8039757	ID=MS.gene20293.t1.exon2;Parent=MS.gene20293.t1
chr5.1	CDS	8039757	8039811	8039757	ID=cds.MS.gene20293.t1;Parent=MS.gene20293.t1
chr5.1	exon	8039889	8041831	8039889	ID=MS.gene20293.t1.exon3;Parent=MS.gene20293.t1
chr5.1	CDS	8039889	8041831	8039889	ID=cds.MS.gene20293.t1;Parent=MS.gene20293.t1
chr5.1	exon	8041950	8042108	8041950	ID=MS.gene20293.t1.exon4;Parent=MS.gene20293.t1
chr5.1	CDS	8041950	8042108	8041950	ID=cds.MS.gene20293.t1;Parent=MS.gene20293.t1
chr5.1	exon	8042240	8042411	8042240	ID=MS.gene20293.t1.exon5;Parent=MS.gene20293.t1
chr5.1	CDS	8042240	8042411	8042240	ID=cds.MS.gene20293.t1;Parent=MS.gene20293.t1
chr5.1	exon	8042545	8042843	8042545	ID=MS.gene20293.t1.exon6;Parent=MS.gene20293.t1
chr5.1	CDS	8042545	8042843	8042545	ID=cds.MS.gene20293.t1;Parent=MS.gene20293.t1
chr5.1	exon	8042981	8043220	8042981	ID=MS.gene20293.t1.exon7;Parent=MS.gene20293.t1
chr5.1	CDS	8042981	8043220	8042981	ID=cds.MS.gene20293.t1;Parent=MS.gene20293.t1

Gene Sequence

>MS.gene20293

ATGATGGAGAATTATTTGCAAGAGAATTTTGGAGGAGTGAAGTCAAAAAACTCATCTGAAGAAGCACTTCGAAGATGGAGAGATGTTTGTGGATTCGTCAAGAATCCCAAAAGACGTTTTCGTTTCACTGCCAATCTCGACAAGAGAGGCGAAGCTGCTGCTATGCGTCGTACCAATCAGGTTTCTTTTTTTTATTATTCAACACATGTTAGATAAGATAGCTCCGCCAATTATATTTTAGATAGATCAATTATTAATTTCTTCTTACTCTATTATTAATTGGTTACTACATTATTATATTTCAAAGATGCTTTTCCATTGGTTGTTCTTAATTTTATTTTTTTATTTTTGTATTGTTTACGCAATCATATTTATTTTTTAATTTATACTGCACTGGTCAACATTTATGAAAAGAACATTTGCGCAATATCACATTTATTTGTGTGTATTATTTGTCCTGTTGTTATTGCTTGGACTATTAGGCTGTACATGAATCTATGGGGTCCACCGCAGACCGGTAGTTAGAAATTATTTGCAACTTCAACGATGATAGTCTGGTATTCATGTTCCTCTGAGACGATGACTTGATCCGTGTCAATTTGACAAAAATAAGGGAAGCGAATGCGTGTCTTAAAACTCAACTCATTTGATTTTCCTTGTTTTTGCCGAATAGACAAATATTAGATCATCGTCTCGGATGTGTTGGAGGGGAAAACTTCTACTTCTACTTCCAAGGAACGTCGATCATTGTTAGAGTTTCGAGTGATTTCTAAGTACTAGTCAATTGTGGTATAGGCTCTAACAAATATTTGTGGCTTCTAATTGGTTTTCAAAAATTCAAATTTGAACCAAGATACCATCGAGACTTGTTCTCAGCTCTGGCATTACCCTCTTTCCTTCACCCTCTTTCCTTCAATTTCACTTCACGTTTGTAAAGTCAAAGTCTGAAATCTGAACACAAGTATGTATTTGACTCTTAAGAATTTGTATATTCCAGATTTTGAGCTTATCTAGTTAATGGTTTAGCAATTAAAATGTTGCTACACTCCATAAAGAAGAACACAGGATGAGCATAAATGCATAAATGAGCTAATTTGATAATTTTTATGGGGTATGGATGAAATTCAAACATTAAATGCACTTTACCCGTACAAGTTATAAAACAACTTTTTGAAATAATTATAAGCATCAGATTAGAACCAACATTTTGATTACATGTCATCCGCAGCTTCTCTATCTAATGCGGTTTCACAAAACTCTGTTATCACGTATCACCCACACGCATGTGCTCATGTACTGTATGAAAACTATTTTTCTTAATAATGGATTTGAGAATGCTTATCAAGTACTATAAACAGTGATTCCTCAGTTTTTTCTTCATTACATAGAATGTGACATACTTCATTTTTTATTTTTCAAAAGACTTATTCTCTCTCCTTACTGCAGGAGAAACTGAGGGTGGCAGTTTTGGTTTCTAAAGCAGCATTTCAATTTATCCAAGGTAAGTTTCTTCCACGTTATTCTCATGGCTTAAAATTATTAGAGCCAATATATTTACTTTTGCTCATATTCACACAGGCACGAAACCAAGCGATTACAAAGTGCCGGAGGAAGTTAAAGATGCAGGTTTTCAAATCTGCGGTGATGAATTAGGGTCTATTGTTGAAGGCCATGATGTGAAGAAGTTGAAATACCATGGTAAGATTGATGGCATTGTAGAAAAACTTTCTACATCAGCTACCGAGGGGATTAGCAATGATACTGATTTGCTTGATAAGAGACAACAGATATATGGAATCAATAAATTCACTGAAAGTCAAGCTAAAAGCTTCTGGGTTTTTGTTTGGGAAGCACTTCAAGACATGACTCTCATGATACTTGGAGTGTGTGCTCTTGTGTCACTGATAGTTGGCATTGCAACTGAAGGATGGCCTAAGGGTGCTCATGATGGTCTTGGAATTGTTGCCAGTATCTTATTGGTCGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAGTTCAAGGATTTGGACAAGGAGAAGAAGAAAATTTCCATTCAGGTCACAAGAAATGGATATAGGCAGAAAATGTCTATATATGAATTACTTCCTGGTGATATAGTGCATCTTGCCATTGGTGACCAAGTGCCTGCTGATGGACTCTTTGTTTCAGGATTTTCTCTGTTGATTGATGAGTCAAGTTTAACAGGAGAGAGTGAGCCTGTGGTGGTGAACACTGAAAATCCATTTCTTCTTTCAGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGGTTACCACAGTTGGAATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGTGATGATGAAACCCCATTACAAGTGAAACTTAATGGAGTGGCAACCATTATTGGGAAAATAGGGTTATTCTTTGCAATTGTTACTTTTGCAGTTCTTGTGCAAGGACTTGTGAGCCTTAAACTTCAACAAGAAAACTTCTGGAACTGGAATGGGGATGATGCTTTGGAGATGTTGGAGTACTTTGCGATTGCAGTTACCATCGTTGTTGTTGCTGTTCCAGAAGGGCTTCCATTAGCTGTGACATTGAGCCTTGCATTTGCTATGAAAAAAATGATGAATGACAAGGCCCTTGTCCGAAATTTGGCAGCTTGTGAGACAATGGGATCAGCCACAACTATATGTAGTGACAAAACTGGGACACTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGCATGAAAAGCAAGGAAGTAAGCAACAAAACTTCTAGTTTGAGCTCTGAACTCCCAGAATCTGTTGTGAAACTGCTGCAACAGTCAATATTTAACAACACTGGAGGTGAGGTTGTGGTTAACAAACAAGGGAAACACGAAATTTTAGGGACACCAACCGAGACTGCAATATTGGAGTTTGGCTTATCATTAGGTGGTGATTTTCAAGGAGAGAGACAAGCATGCAAACTTGTTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGAATGGGTGCAGTAGTGGAGCTCCCTAGTGGAGGTTTAAGAGCTCACTGTAAAGGCGCTTCTGAAATAGTTCTTGCTGCTTGTGACAAAGTTCTCAATTCAAACGGCGAGGTTGTCCCACTTGATGAAGAATCAACTAATCATCTCACTACTACAATAAACCAGTTTGCTAATGAGACACTTAGAACTTTATGCCTTGCCTATATGGAATTGGAAAATGGGTTCTCTGCTGAAGACACCATTCCTGTTACTGGATTCACTTGTATAGGAGTTGTTGGTATCAAAGATCCCGTTCGTCCCGGTGTTAAGGAGTCTGTAGCTCTTTGTCGTTCAGCTGGAATAACAGTAAGAATGGTTACAGGTGACAATATTAATACTGCAAAGGCTATAGCTAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAAGGTCCTGAATTCAGAGAGAAGAGTTTGGAAGAGTTGCTTGAACTGATTCCCAAAATTCAGGTACTTCTTACCTTCTTTTATGCACTACACCTTGATTGCTTCATTACCAATCTATCTTACAGTTACAGATGTTTCATGGTGGATCCTTTCAGTAACACAAATGTTTAATTCCTTTTAGGTTATGGCTCGATCCTCACCTTTAGACAAGCATACATTGGTGAGACACCTTCGCACAACGTTTGGAGAAGTTGTAGCTGTAACTGGTGATGGGACAAATGATGCACCAGCCCTTCATGAAGCAGACATTGGACTTGCCATGGGTATTGCTGGAACTGAGGTGAGTCTCAAATATCTGAAACCAAAATAAAACAAAAGATGATGGGCACTTGTGCTACATTTTAGTCATTGATTAATTTTGTATTGCAATGAGAATACAAGAGTCTGGCTAATTACGTATTATGTGTGCAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACAATAGTAACCGTGGCCAAATGGGGGCGTTCTGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACGGTTAATATCGTTGCTTTAATAGTGAACTTTACATCAGCCTGCTTGACAGGTTAGAAATTTAGATTAATTTGTCTAGTTTGATTATGGACTTCACATCATTTTGCATGATATGATATAAATTTAGAAACATTTTATTCCTTGTACAACTTTATCTAACAATATAATTTGCATTTTGTCTTCAGGAACTGCTCCCCTCACTGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCACTTGCAACTGAACCTCCAAATGATGATTTAATGAAGCGTGCACCTGTTGGAAGAAAAGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTGGGACAATCACTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAAAGGAAAAACCATCTTTTCGCTTGATGGCCCCAATTCTGATCTAGTCTTAAACACACTTATCTTCAACGCATTTGTATTCTGCCAGGTACTTTTTCTGAAAAGGCCGAACAACTTGTTTACGAATAATAGTTGAGTCCATGTCCAATTAGGAAAGATCAAGTTAAAAGCATATGTAACGGTTGTAATGTGGCTTACAAGTTTTGGGTTGGTCTGGTTTTGCAGGTTTTCAATGAGATAAACTCACGTGAGATGGAGAAAATTAATGTTTTTAAAGGCATATTGGATAACTATGTCTTCGTGGGTGTGATCAGTGCTACAATCTTCTTTCAAATCATAATCGTGGAGTACTTGGGAACCTTTGCAAACACAACACCTCTCACTCTGGTACAGTGGTTCTTCTGCTTATTCGTTGGATTTATGGGAATGCCTATTGCTGCTCGCTTAAAGAAGATCCCCGTCTAA

Protein sequence

>MS.gene20293.t1

MMENYLQENFGGVKSKNSSEEALRRWRDVCGFVKNPKRRFRFTANLDKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGTKPSDYKVPEEVKDAGFQICGDELGSIVEGHDVKKLKYHGKIDGIVEKLSTSATEGISNDTDLLDKRQQIYGINKFTESQAKSFWVFVWEALQDMTLMILGVCALVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSLLIDESSLTGESEPVVVNTENPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIVTFAVLVQGLVSLKLQQENFWNWNGDDALEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMKSKEVSNKTSSLSSELPESVVKLLQQSIFNNTGGEVVVNKQGKHEILGTPTETAILEFGLSLGGDFQGERQACKLVKVEPFNSTKKRMGAVVELPSGGLRAHCKGASEIVLAACDKVLNSNGEVVPLDEESTNHLTTTINQFANETLRTLCLAYMELENGFSAEDTIPVTGFTCIGVVGIKDPVRPGVKESVALCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSLEELLELIPKIQVMARSSPLDKHTLVRHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNIVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRAPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSKGKTIFSLDGPNSDLVLNTLIFNAFVFCQVFNEINSREMEKINVFKGILDNYVFVGVISATIFFQIIIVEYLGTFANTTPLTLVQWFFCLFVGFMGMPIAARLKKIPV