AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019711


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019711.t1 MTR_8g028410 98.065 310 6 0 1 310 1 310 0.0 632
MS.gene019711.t1 MTR_8g028410 93.478 276 17 1 1 275 1 276 0.0 530
MS.gene019711.t1 MTR_8g028410 98.198 222 4 0 1 222 1 222 1.53e-163 454
MS.gene019711.t1 MTR_8g028410 98.039 204 4 0 1 204 1 204 2.41e-149 417
MS.gene019711.t1 MTR_7g116710 70.205 292 86 1 20 310 2 293 2.31e-147 416
MS.gene019711.t1 MTR_3g091760 50.714 140 69 0 6 145 7 146 8.43e-42 145
MS.gene019711.t1 MTR_3g091760 50.714 140 69 0 6 145 7 146 9.40e-42 147
MS.gene019711.t1 MTR_1g007880 52.672 131 62 0 15 145 13 143 1.09e-41 147
MS.gene019711.t1 MTR_1g007880 52.672 131 62 0 15 145 32 162 2.83e-41 146
MS.gene019711.t1 MTR_6g087680 37.063 143 85 2 1 143 1 138 1.10e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019711.t1 AT2G46225 61.824 296 104 2 15 310 12 298 5.90e-126 362
MS.gene019711.t1 AT2G46225 56.269 327 103 3 15 310 12 329 7.05e-121 350
MS.gene019711.t1 AT2G46225 59.797 296 98 3 15 310 12 286 4.99e-117 339
MS.gene019711.t1 AT3G49290 34.951 309 173 6 15 306 7 304 1.40e-44 154
MS.gene019711.t1 AT3G49290 34.951 309 173 6 15 306 7 304 1.40e-44 154
MS.gene019711.t1 AT5G24310 51.095 137 67 0 15 151 7 143 1.00e-42 147
MS.gene019711.t1 AT5G24310 51.095 137 67 0 15 151 13 149 1.04e-42 149
MS.gene019711.t1 AT5G24310 51.095 137 67 0 15 151 7 143 1.38e-42 149
MS.gene019711.t1 AT5G24310 51.095 137 67 0 15 151 13 149 1.50e-42 149
MS.gene019711.t1 AT5G42030 45.669 127 69 0 19 145 18 144 2.62e-32 119
MS.gene019711.t1 AT5G42030 45.669 127 69 0 19 145 18 144 2.93e-32 121
MS.gene019711.t1 AT5G42030 45.669 127 69 0 19 145 18 144 4.22e-31 119
MS.gene019711.t1 AT5G42030 42.169 83 48 0 63 145 15 97 1.27e-16 77.8

Find 66 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTTATCCGTGTAAATT+TGG 0.160073 8.1:-73234962 None:intergenic
AAAGAACCAGTCTTCAATTT+TGG 0.182937 8.1:-73236574 None:intergenic
TTCTGCTGCGAGTAGGGGTT+TGG 0.286640 8.1:-73236516 None:intergenic
CACATTGGATGTCTCAACTA+TGG 0.289380 8.1:+73234817 MS.gene019711:CDS
GCTAGATTCTGTCAATAAAA+AGG 0.289771 8.1:+73235157 MS.gene019711:intron
GAGCTTCGTCAACGCCTTGC+AGG 0.320261 8.1:+73233319 MS.gene019711:CDS
AATATAGTGCTTATGATGTC+TGG 0.340309 8.1:-73235018 None:intergenic
ACATTTGTTTCTGTTCACTA+TGG 0.343405 8.1:-73234426 None:intergenic
TGAAGGTTGAAAACGAGTTC+TGG 0.380922 8.1:-73235231 None:intergenic
CCTGAACCCTGCTATTGGTT+TGG 0.382157 8.1:-73236461 None:intergenic
GTGAATGCTGTTGATCATCT+TGG 0.389419 8.1:+73234755 MS.gene019711:CDS
AGGCCTTGGCAGCAAACTTT+GGG 0.391332 8.1:-73235572 None:intergenic
AATGACCTGAACCCTGCTAT+TGG 0.406748 8.1:-73236466 None:intergenic
GAGGCCTTGGCAGCAAACTT+TGG 0.406813 8.1:-73235573 None:intergenic
AAGTTTGCTGCCAAGGCCTC+TGG 0.411813 8.1:+73235576 MS.gene019711:CDS
GAAGGTCTCTACAATAAATC+AGG 0.422241 8.1:+73234844 MS.gene019711:CDS
TCTGCTGCGAGTAGGGGTTT+GGG 0.427185 8.1:-73236515 None:intergenic
CCAAACCAATAGCAGGGTTC+AGG 0.435252 8.1:+73236461 MS.gene019711:CDS
GCACACTTCTGCTGCGAGTA+GGG 0.445501 8.1:-73236522 None:intergenic
TACTATACCTGTGCAAACAT+TGG 0.461592 8.1:+73235804 MS.gene019711:CDS
ATGGAAATATCCAGAGGCCT+TGG 0.471970 8.1:-73235586 None:intergenic
TGTCTCAACTATGGGTTTGA+AGG 0.472051 8.1:+73234826 MS.gene019711:CDS
ACTATACCTGTGCAAACATT+GGG 0.475691 8.1:+73235805 MS.gene019711:CDS
CAAATTTACACGGATAAAGA+AGG 0.478833 8.1:+73234963 MS.gene019711:CDS
CAGATAATGAAGAGAGCACT+TGG 0.490925 8.1:+73235731 MS.gene019711:intron
GAACCCAAAGTTTGCTGCCA+AGG 0.491049 8.1:+73235569 MS.gene019711:CDS
ACACGGATAAAGAAGGTCTT+CGG 0.492480 8.1:+73234970 MS.gene019711:CDS
TATATCACAAACCTAAAAGA+TGG 0.496438 8.1:-73235605 None:intergenic
GAGACTAAGTCTACATTGAA+AGG 0.510089 8.1:+73235413 MS.gene019711:CDS
AAACATTGGGCGGCACACGC+AGG 0.515733 8.1:+73235818 MS.gene019711:CDS
GATGGTTCCAAACCAATAGC+AGG 0.518252 8.1:+73236454 MS.gene019711:CDS
ATATAGTGCTTATGATGTCT+GGG 0.525673 8.1:-73235017 None:intergenic
ACATTGGATGTCTCAACTAT+GGG 0.540656 8.1:+73234818 MS.gene019711:CDS
AGACTAAGTCTACATTGAAA+GGG 0.542962 8.1:+73235414 MS.gene019711:CDS
GAAGCTCTTACTACGTTCCA+TGG 0.545325 8.1:-73233303 None:intergenic
TTCGGTAAGTGAGTTTGTGC+TGG 0.547539 8.1:-73235766 None:intergenic
GTGCCGCCCAATGTTTGCAC+AGG 0.548635 8.1:-73235811 None:intergenic
CAGAATAAAGTTGAGGCCGC+AGG 0.550806 8.1:-73234375 None:intergenic
TCTCTATCTGCAGGATGCAT+CGG 0.551390 8.1:+73236432 MS.gene019711:intron
CCTTCTCGAGCAGCACACAT+TGG 0.563073 8.1:+73234802 MS.gene019711:CDS
AAAACACCAAAATTGAAGAC+TGG 0.564233 8.1:+73236568 MS.gene019711:CDS
CACACTTCTGCTGCGAGTAG+GGG 0.571389 8.1:-73236521 None:intergenic
TCATACTTGCCAAATTTACA+CGG 0.581952 8.1:+73234953 MS.gene019711:CDS
AACATTGGGCGGCACACGCA+GGG 0.582037 8.1:+73235819 MS.gene019711:CDS
CCAATGTGTGCTGCTCGAGA+AGG 0.587460 8.1:-73234802 None:intergenic
AGCACACTTCTGCTGCGAGT+AGG 0.594368 8.1:-73236523 None:intergenic
GTAGAAGTAGGAACTCCATT+CGG 0.599009 8.1:-73235784 None:intergenic
TTCATCAAAAGTCATGGCGG+AGG 0.601913 8.1:-73233276 None:intergenic
ACTTACTTTGGGGAAGCCTG+CGG 0.603022 8.1:-73235440 None:intergenic
GGAGACTTCATCAAAAGTCA+TGG 0.603789 8.1:-73233282 None:intergenic
TTCAGGAACTTAAGAACCTG+CGG 0.603957 8.1:+73234359 MS.gene019711:intron
TATCTGCAGGATGCATCGGA+TGG 0.604425 8.1:+73236436 MS.gene019711:intron
GATGATCAACAGCATTCACA+AGG 0.607218 8.1:-73234751 None:intergenic
TACATTGAAAGGGACTCCGC+AGG 0.609945 8.1:+73235424 MS.gene019711:CDS
GCACAAACTCACTTACCGAA+TGG 0.611697 8.1:+73235769 MS.gene019711:CDS
TAAGTGAGTTTGTGCTGGTG+AGG 0.618548 8.1:-73235761 None:intergenic
TGCACAGGTATAGTAGAAGT+AGG 0.619217 8.1:-73235796 None:intergenic
AGAAAGAAAGAGAACCTGCA+AGG 0.625608 8.1:-73233333 None:intergenic
ATACCTGTGCAAACATTGGG+CGG 0.626367 8.1:+73235808 MS.gene019711:CDS
TAGGGGTTTGGGAAGACTCA+CGG 0.630972 8.1:-73236504 None:intergenic
TTTGCGTCGATCTGTATGTG+TGG 0.647834 8.1:-73235191 None:intergenic
ATGGTTCCAAACCAATAGCA+GGG 0.652302 8.1:+73236455 MS.gene019711:CDS
TAAAAGATGGAAATATCCAG+AGG 0.674280 8.1:-73235592 None:intergenic
TCTGCAGCAGAATAAAGTTG+AGG 0.685730 8.1:-73234382 None:intergenic
ATGATCAACAGCATTCACAA+GGG 0.712548 8.1:-73234750 None:intergenic
GACTTCATCAAAAGTCATGG+CGG 0.712815 8.1:-73233279 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTTTATTTTATTT+TGG + chr8.1:73233625-73233644 MS.gene019711:intron 0.0%
!!! ATTTTATTTTAGAAAAACAA+AGG - chr8.1:73236376-73236395 None:intergenic 10.0%
!!! TTTTAAAGGATAAATAATTT+AGG + chr8.1:73233776-73233795 MS.gene019711:intron 10.0%
!! AGTATGTTATTAATGTATTA+GGG + chr8.1:73234694-73234713 MS.gene019711:intron 15.0%
!!! GAATATATACTTTTATATCT+AGG + chr8.1:73235350-73235369 MS.gene019711:intron 15.0%
!!! TTTGATAGACAATTATATTT+TGG + chr8.1:73234895-73234914 MS.gene019711:intron 15.0%
!! AAATTTGCAACTAAAGTTAA+TGG + chr8.1:73233855-73233874 MS.gene019711:intron 20.0%
!! AGAATGTAAAAAATAACAAC+CGG - chr8.1:73234021-73234040 None:intergenic 20.0%
!! CAGTATGTTATTAATGTATT+AGG + chr8.1:73234693-73234712 MS.gene019711:intron 20.0%
!! GAAAAAAACCATTAACAAAA+AGG - chr8.1:73234460-73234479 None:intergenic 20.0%
!! TTCAAATGGTACTATTAATA+AGG + chr8.1:73234154-73234173 MS.gene019711:intron 20.0%
!!! AAAATTCCCATATACTTTTA+GGG - chr8.1:73234525-73234544 None:intergenic 20.0%
!!! AGATTTAGAGGATATTTTAA+AGG + chr8.1:73233762-73233781 MS.gene019711:intron 20.0%
!!! ATAAGTTTTTAATGATCTGA+CGG + chr8.1:73233557-73233576 MS.gene019711:intron 20.0%
!!! ATATAGCAGTGAATATTTTA+CGG + chr8.1:73236187-73236206 MS.gene019711:intron 20.0%
!!! TTAGGATTTTAACAGTAATT+GGG + chr8.1:73233794-73233813 MS.gene019711:intron 20.0%
!!! TTTAGGATTTTAACAGTAAT+TGG + chr8.1:73233793-73233812 MS.gene019711:intron 20.0%
! AAAACTTATATTGGTGAAAG+AGG - chr8.1:73236079-73236098 None:intergenic 25.0%
! ACATTAATAACATACTGCTA+AGG - chr8.1:73234690-73234709 None:intergenic 25.0%
! ATAAAGAAATAATCAACGCT+TGG - chr8.1:73235670-73235689 None:intergenic 25.0%
! ATAATCTTTCAGAGATTTAG+AGG + chr8.1:73233750-73233769 MS.gene019711:intron 25.0%
! ATATTCACTGCTATATTGTT+CGG - chr8.1:73236183-73236202 None:intergenic 25.0%
! GTCAGATCATTAAAAACTTA+TGG - chr8.1:73233558-73233577 None:intergenic 25.0%
! TATATCACAAACCTAAAAGA+TGG - chr8.1:73235608-73235627 None:intergenic 25.0%
! TATTTATCAAGAACTGAAAG+TGG + chr8.1:73235853-73235872 MS.gene019711:intron 25.0%
! TGATAACTATTATGCTACAT+TGG - chr8.1:73234186-73234205 None:intergenic 25.0%
! TTATATCTCCTTATAGTCTT+TGG + chr8.1:73235697-73235716 MS.gene019711:intron 25.0%
! TTCTTGCCAAAAACTTATAT+TGG - chr8.1:73236088-73236107 None:intergenic 25.0%
!! AAATTTTCCTGAACTTACTT+TGG - chr8.1:73235455-73235474 None:intergenic 25.0%
!! AAGGATTTCCTTTTTGTTAA+TGG + chr8.1:73234449-73234468 MS.gene019711:intron 25.0%
!! AATTTTCCTGAACTTACTTT+GGG - chr8.1:73235454-73235473 None:intergenic 25.0%
!! ATTCTAGTTATACCTTAGTT+TGG + chr8.1:73233955-73233974 MS.gene019711:intron 25.0%
!! CAAAATTCCCATATACTTTT+AGG - chr8.1:73234526-73234545 None:intergenic 25.0%
!! CAAATATTTGGTTCACTAAT+TGG - chr8.1:73236279-73236298 None:intergenic 25.0%
!! CAGGAAAATTTTATAGAATG+AGG + chr8.1:73235464-73235483 MS.gene019711:intron 25.0%
!! CTTTCACCAATATAAGTTTT+TGG + chr8.1:73236079-73236098 MS.gene019711:intron 25.0%
!! TAGTATCCCTAAAAGTATAT+GGG + chr8.1:73234516-73234535 MS.gene019711:intron 25.0%
!! TATAGCAGTGAATATTTTAC+GGG + chr8.1:73236188-73236207 MS.gene019711:intron 25.0%
!!! CAAGGTTTTAAAAACTGAAA+TGG + chr8.1:73233892-73233911 MS.gene019711:intron 25.0%
!!! CATTTCAGTTTTTAAAACCT+TGG - chr8.1:73233894-73233913 None:intergenic 25.0%
!!! TAGACCAATGTTTTAAAAAC+CGG - chr8.1:73234109-73234128 None:intergenic 25.0%
!!! TTCCTTAAACTTTTTCTTGA+AGG + chr8.1:73234477-73234496 MS.gene019711:intron 25.0%
AAAACACCAAAATTGAAGAC+TGG + chr8.1:73236568-73236587 MS.gene019711:CDS 30.0%
AAATCAATCCCAAAAACTCA+AGG - chr8.1:73235285-73235304 None:intergenic 30.0%
AACTAGTCACCAATATTTCT+AGG - chr8.1:73234553-73234572 None:intergenic 30.0%
AATATAGTGCTTATGATGTC+TGG - chr8.1:73235021-73235040 None:intergenic 30.0%
AGACTAAGTCTACATTGAAA+GGG + chr8.1:73235414-73235433 MS.gene019711:CDS 30.0%
AGACTACGGTAACATATATT+GGG - chr8.1:73236255-73236274 None:intergenic 30.0%
AGTCTTCTGGTAGATATAAA+CGG + chr8.1:73234608-73234627 MS.gene019711:intron 30.0%
AGTGAACAGAAACAAATGTA+AGG + chr8.1:73234430-73234449 MS.gene019711:intron 30.0%
ATATAGTGCTTATGATGTCT+GGG - chr8.1:73235020-73235039 None:intergenic 30.0%
ATCCTGAATAATGAGATGAT+GGG + chr8.1:73233832-73233851 MS.gene019711:intron 30.0%
CAAATTTACACGGATAAAGA+AGG + chr8.1:73234963-73234982 MS.gene019711:CDS 30.0%
CTTCTTTATCCGTGTAAATT+TGG - chr8.1:73234965-73234984 None:intergenic 30.0%
GCTAGATTCTGTCAATAAAA+AGG + chr8.1:73235157-73235176 MS.gene019711:intron 30.0%
GGCTTGATTAAAAAGGAAAA+AGG + chr8.1:73235987-73236006 MS.gene019711:intron 30.0%
TAAAAGATGGAAATATCCAG+AGG - chr8.1:73235595-73235614 None:intergenic 30.0%
TAGACTACGGTAACATATAT+TGG - chr8.1:73236256-73236275 None:intergenic 30.0%
TATCCTGAATAATGAGATGA+TGG + chr8.1:73233831-73233850 MS.gene019711:intron 30.0%
TCAGCAAAAGATTAACAAAC+AGG - chr8.1:73235954-73235973 None:intergenic 30.0%
TCATACTTGCCAAATTTACA+CGG + chr8.1:73234953-73234972 MS.gene019711:CDS 30.0%
TGACGACTGTATCAAATATT+TGG - chr8.1:73236291-73236310 None:intergenic 30.0%
TGCCTTCAAGAAAAAGTTTA+AGG - chr8.1:73234482-73234501 None:intergenic 30.0%
TTAGCTAGGCTTGATTAAAA+AGG + chr8.1:73235980-73235999 MS.gene019711:intron 30.0%
TTATATCTACCAGAAGACTA+CGG - chr8.1:73234607-73234626 None:intergenic 30.0%
TTATCACTGTATAAGCCATA+CGG + chr8.1:73234200-73234219 MS.gene019711:intron 30.0%
TTGGGAAAACTAATCTCATA+AGG + chr8.1:73233466-73233485 MS.gene019711:intron 30.0%
! AAAGAACCAGTCTTCAATTT+TGG - chr8.1:73236577-73236596 None:intergenic 30.0%
! ACTAGTCACCAATATTTCTA+GGG - chr8.1:73234552-73234571 None:intergenic 30.0%
! AGAAATATTGGTGACTAGTT+GGG + chr8.1:73234553-73234572 MS.gene019711:intron 30.0%
! ATTTTCCTGAACTTACTTTG+GGG - chr8.1:73235453-73235472 None:intergenic 30.0%
! CTAGTATCCCTAAAAGTATA+TGG + chr8.1:73234515-73234534 MS.gene019711:intron 30.0%
! GTCATTTGATCCTCATATTT+TGG + chr8.1:73234332-73234351 MS.gene019711:intron 30.0%
! TAGAAATATTGGTGACTAGT+TGG + chr8.1:73234552-73234571 MS.gene019711:intron 30.0%
! TCTGGATATTTCCATCTTTT+AGG + chr8.1:73235594-73235613 MS.gene019711:CDS 30.0%
!! AAGGTGTTGATAATTATAGC+AGG + chr8.1:73236006-73236025 MS.gene019711:intron 30.0%
!! ACATTTGTTTCTGTTCACTA+TGG - chr8.1:73234429-73234448 None:intergenic 30.0%
!! TTATCAGCTCTAAACATGAA+TGG + chr8.1:73235512-73235531 MS.gene019711:intron 30.0%
!! TTTGGGATTGATTTTAACAG+TGG + chr8.1:73235291-73235310 MS.gene019711:intron 30.0%
!! TTTTGAGTCCCTAGAAATAT+TGG + chr8.1:73234541-73234560 MS.gene019711:intron 30.0%
AAGATAGGTTCAATTGCTGT+TGG + chr8.1:73233990-73234009 MS.gene019711:intron 35.0%
ACATTGGATGTCTCAACTAT+GGG + chr8.1:73234818-73234837 MS.gene019711:CDS 35.0%
ACGGTAACATATATTGGGTT+CGG - chr8.1:73236250-73236269 None:intergenic 35.0%
ACTATACCTGTGCAAACATT+GGG + chr8.1:73235805-73235824 MS.gene019711:CDS 35.0%
ACTGAAATGGACAGTTCAAT+TGG + chr8.1:73233905-73233924 MS.gene019711:intron 35.0%
ACTTTGTATCTGGTGAATGT+TGG + chr8.1:73233447-73233466 MS.gene019711:intron 35.0%
AGTTCAGATCTGCATTTGTT+AGG + chr8.1:73233421-73233440 MS.gene019711:intron 35.0%
ATGATCAACAGCATTCACAA+GGG - chr8.1:73234753-73234772 None:intergenic 35.0%
ATGGAATGTAGTCTAAACCA+AGG + chr8.1:73233874-73233893 MS.gene019711:intron 35.0%
CAAAGAGGACAAAAAGTAGA+TGG - chr8.1:73234276-73234295 None:intergenic 35.0%
CAATTGAACCTATCTTATCC+TGG - chr8.1:73233986-73234005 None:intergenic 35.0%
CCTGAAATGACCAAAATATG+AGG - chr8.1:73234345-73234364 None:intergenic 35.0%
CTTTGTATCTGGTGAATGTT+GGG + chr8.1:73233448-73233467 MS.gene019711:intron 35.0%
GAAGGTCTCTACAATAAATC+AGG + chr8.1:73234844-73234863 MS.gene019711:CDS 35.0%
GAGACTAAGTCTACATTGAA+AGG + chr8.1:73235413-73235432 MS.gene019711:CDS 35.0%
GCAAACAACAAGCAAAGTAT+AGG - chr8.1:73235918-73235937 None:intergenic 35.0%
GCAAGAAATGATTGATTGAG+AGG + chr8.1:73236101-73236120 MS.gene019711:intron 35.0%
GCACATAACCAAAGACTATA+AGG - chr8.1:73235708-73235727 None:intergenic 35.0%
GGTAAGTGATAATCACAAGT+TGG - chr8.1:73235897-73235916 None:intergenic 35.0%
GTCAAACAAAAATTGCTAGC+TGG - chr8.1:73236320-73236339 None:intergenic 35.0%
GTCTTCTGGTAGATATAAAC+GGG + chr8.1:73234609-73234628 MS.gene019711:intron 35.0%
GTGAAAGAGGTAAAGAACAA+TGG - chr8.1:73236066-73236085 None:intergenic 35.0%
GTTCACTAATTGGTAGACTA+CGG - chr8.1:73236269-73236288 None:intergenic 35.0%
TAAAAGCAGTGAAACCTACT+TGG - chr8.1:73235047-73235066 None:intergenic 35.0%
TACTATACCTGTGCAAACAT+TGG + chr8.1:73235804-73235823 MS.gene019711:CDS 35.0%
TACTGCTTCATATTAAGTCC+AGG + chr8.1:73236040-73236059 MS.gene019711:intron 35.0%
TATCACTGTATAAGCCATAC+GGG + chr8.1:73234201-73234220 MS.gene019711:intron 35.0%
TGTTATCGTCTTATCGACAA+TGG - chr8.1:73234637-73234656 None:intergenic 35.0%
TTATCAAGAACTGAAAGTGG+CGG + chr8.1:73235856-73235875 MS.gene019711:intron 35.0%
TTCCCATCATCTCATTATTC+AGG - chr8.1:73233837-73233856 None:intergenic 35.0%
TTTGCTGAAATTGCTTAGCT+AGG + chr8.1:73235966-73235985 MS.gene019711:intron 35.0%
TTTGTCCTCTTTGATTGTTG+CGG + chr8.1:73234283-73234302 MS.gene019711:intron 35.0%
! AGCACTATATTTTGCCAAGT+AGG + chr8.1:73235030-73235049 MS.gene019711:intron 35.0%
! ATGAAAGAGTTTTTGCTGGA+GGG - chr8.1:73235379-73235398 None:intergenic 35.0%
! GAAATATTGGTGACTAGTTG+GGG + chr8.1:73234554-73234573 MS.gene019711:intron 35.0%
! TTATCCCTCCTTGAGTTTTT+GGG + chr8.1:73235274-73235293 MS.gene019711:intron 35.0%
! TTTATCCCTCCTTGAGTTTT+TGG + chr8.1:73235273-73235292 MS.gene019711:intron 35.0%
!! ACTTTTAGGGATACTAGAAG+AGG - chr8.1:73234512-73234531 None:intergenic 35.0%
!! TCACTGCTTTTATGTTCATC+TGG + chr8.1:73235055-73235074 MS.gene019711:intron 35.0%
!!! ACAAACAGGTTTTAGAACAC+TGG - chr8.1:73235940-73235959 None:intergenic 35.0%
!!! ATACTATTTTGAAACGTGCG+TGG + chr8.1:73234306-73234325 MS.gene019711:intron 35.0%
!!! CAATGTTTTAAAAACCGGAC+TGG - chr8.1:73234104-73234123 None:intergenic 35.0%
!!! CAGTCCGGTTTTTAAAACAT+TGG + chr8.1:73234102-73234121 MS.gene019711:intron 35.0%
!!! CCTCATATTTTGGTCATTTC+AGG + chr8.1:73234342-73234361 MS.gene019711:intron 35.0%
AAGTAGCTATTTGTCGAGTC+AGG + chr8.1:73234130-73234149 MS.gene019711:intron 40.0%
ACACGGATAAAGAAGGTCTT+CGG + chr8.1:73234970-73234989 MS.gene019711:CDS 40.0%
ACTCATAAGTCTCTATCTGC+AGG + chr8.1:73236423-73236442 MS.gene019711:intron 40.0%
AGAAAGAAAGAGAACCTGCA+AGG - chr8.1:73233336-73233355 None:intergenic 40.0%
AGGGATACTAGAAGAGGTTA+AGG - chr8.1:73234506-73234525 None:intergenic 40.0%
AGTATCCGCAACAATCAAAG+AGG - chr8.1:73234291-73234310 None:intergenic 40.0%
ATCCTGGTTCAACCAAACTA+AGG - chr8.1:73233970-73233989 None:intergenic 40.0%
ATGGTTCCAAACCAATAGCA+GGG + chr8.1:73236455-73236474 MS.gene019711:CDS 40.0%
CAATCCCAAAAACTCAAGGA+GGG - chr8.1:73235281-73235300 None:intergenic 40.0%
CACATTGGATGTCTCAACTA+TGG + chr8.1:73234817-73234836 MS.gene019711:CDS 40.0%
CTCCAGCAAAAACTCTTTCA+TGG + chr8.1:73235378-73235397 MS.gene019711:CDS 40.0%
GACTTCATCAAAAGTCATGG+CGG - chr8.1:73233282-73233301 None:intergenic 40.0%
GATGATCAACAGCATTCACA+AGG - chr8.1:73234754-73234773 None:intergenic 40.0%
GGAGACTTCATCAAAAGTCA+TGG - chr8.1:73233285-73233304 None:intergenic 40.0%
GGATGATCCTATGCTACTAA+AGG - chr8.1:73234586-73234605 None:intergenic 40.0%
GTAGAAGTAGGAACTCCATT+CGG - chr8.1:73235787-73235806 None:intergenic 40.0%
GTGAATGCTGTTGATCATCT+TGG + chr8.1:73234755-73234774 MS.gene019711:CDS 40.0%
GTGCTCTCTTCATTATCTGT+AGG - chr8.1:73235730-73235749 None:intergenic 40.0%
TCAATCCCAAAAACTCAAGG+AGG - chr8.1:73235282-73235301 None:intergenic 40.0%
TCTGCAGCAGAATAAAGTTG+AGG - chr8.1:73234385-73234404 None:intergenic 40.0%
TGAAGGTTGAAAACGAGTTC+TGG - chr8.1:73235234-73235253 None:intergenic 40.0%
TGCACAGGTATAGTAGAAGT+AGG - chr8.1:73235799-73235818 None:intergenic 40.0%
TGGACAGTTCAATTGGAAAC+TGG + chr8.1:73233912-73233931 MS.gene019711:intron 40.0%
TGGTTGAACCAGGATAAGAT+AGG + chr8.1:73233975-73233994 MS.gene019711:intron 40.0%
TGTCTCAACTATGGGTTTGA+AGG + chr8.1:73234826-73234845 MS.gene019711:CDS 40.0%
TTCAGGAACTTAAGAACCTG+CGG + chr8.1:73234359-73234378 MS.gene019711:intron 40.0%
TTGTCGAGTCAGGATTCAAA+TGG + chr8.1:73234140-73234159 MS.gene019711:intron 40.0%
! AGAACTCGTTTTCAACCTTC+AGG + chr8.1:73235233-73235252 MS.gene019711:CDS 40.0%
! CAGTGAATATTTTACGGGCT+GGG + chr8.1:73236193-73236212 MS.gene019711:intron 40.0%
! CATGAAAGAGTTTTTGCTGG+AGG - chr8.1:73235380-73235399 None:intergenic 40.0%
! GACTTTTGATGAAGTCTCCA+TGG + chr8.1:73233286-73233305 MS.gene019711:CDS 40.0%
! TACCTTAGTTTGGTTGAACC+AGG + chr8.1:73233965-73233984 MS.gene019711:intron 40.0%
! TCAGATCTGCATTTGTTAGG+TGG + chr8.1:73233424-73233443 MS.gene019711:intron 40.0%
! TGAAAGAGTTTTTGCTGGAG+GGG - chr8.1:73235378-73235397 None:intergenic 40.0%
! TGCCATGAAAGAGTTTTTGC+TGG - chr8.1:73235383-73235402 None:intergenic 40.0%
! TGTTAGGTGGACTTTGTATC+TGG + chr8.1:73233437-73233456 MS.gene019711:intron 40.0%
!! CAGATAATGAAGAGAGCACT+TGG + chr8.1:73235731-73235750 MS.gene019711:intron 40.0%
!! CTACCAGTATCGATATGTAG+TGG - chr8.1:73235096-73235115 None:intergenic 40.0%
!! TCAATTGCTGTTGGTTCAAC+CGG + chr8.1:73233999-73234018 MS.gene019711:intron 40.0%
!!! TGTTTTAAAAACCGGACTGG+AGG - chr8.1:73234101-73234120 None:intergenic 40.0%
AAACTGGCAAGTTCGTTGGT+CGG + chr8.1:73233928-73233947 MS.gene019711:intron 45.0%
AATGACCTGAACCCTGCTAT+TGG - chr8.1:73236469-73236488 None:intergenic 45.0%
AGAGGTAAAGAACAATGGCC+TGG - chr8.1:73236061-73236080 None:intergenic 45.0%
ATACCTGTGCAAACATTGGG+CGG + chr8.1:73235808-73235827 MS.gene019711:CDS 45.0%
ATACGAGCTGCTTCTACCTA+AGG - chr8.1:73236141-73236160 None:intergenic 45.0%
ATGAAGCGTACTGCATGCAA+CGG + chr8.1:73233692-73233711 MS.gene019711:intron 45.0%
ATGGAAATATCCAGAGGCCT+TGG - chr8.1:73235589-73235608 None:intergenic 45.0%
CCATAACTGAAAAGCCTCAC+CGG + chr8.1:73234070-73234089 MS.gene019711:intron 45.0%
GAAGCTCTTACTACGTTCCA+TGG - chr8.1:73233306-73233325 None:intergenic 45.0%
GATGGTTCCAAACCAATAGC+AGG + chr8.1:73236454-73236473 MS.gene019711:CDS 45.0%
GCACAAACTCACTTACCGAA+TGG + chr8.1:73235769-73235788 MS.gene019711:CDS 45.0%
GTGGGTTCCTTTAGTAGCAT+AGG + chr8.1:73234576-73234595 MS.gene019711:intron 45.0%
TAGGATCATCCGTAGTCTTC+TGG + chr8.1:73234595-73234614 MS.gene019711:intron 45.0%
TCTCTATCTGCAGGATGCAT+CGG + chr8.1:73236432-73236451 MS.gene019711:intron 45.0%
TGCTTCTACCTAAGGACTAG+AGG - chr8.1:73236133-73236152 None:intergenic 45.0%
TTACTCCAAGACACACCTGA+AGG - chr8.1:73235251-73235270 None:intergenic 45.0%
TTCAACCTTCAGGTGTGTCT+TGG + chr8.1:73235243-73235262 MS.gene019711:intron 45.0%
TTCATCAAAAGTCATGGCGG+AGG - chr8.1:73233279-73233298 None:intergenic 45.0%
TTCGGTAAGTGAGTTTGTGC+TGG - chr8.1:73235769-73235788 None:intergenic 45.0%
TTGGAAACTGGCAAGTTCGT+TGG + chr8.1:73233924-73233943 MS.gene019711:intron 45.0%
! ATAAGCCATACGGGATTAGC+AGG + chr8.1:73234210-73234229 MS.gene019711:intron 45.0%
! ATATTGGTGACTAGTTGGGG+TGG + chr8.1:73234557-73234576 MS.gene019711:intron 45.0%
! GCAGTGAATATTTTACGGGC+TGG + chr8.1:73236192-73236211 MS.gene019711:intron 45.0%
! GGTGTTTTCCTCTAGTCCTT+AGG + chr8.1:73236122-73236141 MS.gene019711:intron 45.0%
! TAAGTGAGTTTGTGCTGGTG+AGG - chr8.1:73235764-73235783 None:intergenic 45.0%
! TATTGGTGACTAGTTGGGGT+GGG + chr8.1:73234558-73234577 MS.gene019711:intron 45.0%
! TTTGCGTCGATCTGTATGTG+TGG - chr8.1:73235194-73235213 None:intergenic 45.0%
!! CCAGTATCGATATGTAGTGG+CGG - chr8.1:73235093-73235112 None:intergenic 45.0%
AGGCCTTGGCAGCAAACTTT+GGG - chr8.1:73235575-73235594 None:intergenic 50.0%
CAGAATAAAGTTGAGGCCGC+AGG - chr8.1:73234378-73234397 None:intergenic 50.0%
CCAAACCAATAGCAGGGTTC+AGG + chr8.1:73236461-73236480 MS.gene019711:CDS 50.0%
CCGCCACTACATATCGATAC+TGG + chr8.1:73235090-73235109 MS.gene019711:intron 50.0%
GGCTTCCCCAAAGTAAGTTC+AGG + chr8.1:73235445-73235464 MS.gene019711:intron 50.0%
TACATTGAAAGGGACTCCGC+AGG + chr8.1:73235424-73235443 MS.gene019711:CDS 50.0%
TAGGGGTTTGGGAAGACTCA+CGG - chr8.1:73236507-73236526 None:intergenic 50.0%
TATCTGCAGGATGCATCGGA+TGG + chr8.1:73236436-73236455 MS.gene019711:intron 50.0%
! ACTTACTTTGGGGAAGCCTG+CGG - chr8.1:73235443-73235462 None:intergenic 50.0%
! CACAAGTTGGCCATCAAACG+TGG - chr8.1:73235884-73235903 None:intergenic 50.0%
! CCGGTGAGGCTTTTCAGTTA+TGG - chr8.1:73234073-73234092 None:intergenic 50.0%
! CCTGAACCCTGCTATTGGTT+TGG - chr8.1:73236464-73236483 None:intergenic 50.0%
!! GAACCCAAAGTTTGCTGCCA+AGG + chr8.1:73235569-73235588 MS.gene019711:CDS 50.0%
ACTGCATGCAACGGCTGCAT+CGG + chr8.1:73233701-73233720 MS.gene019711:intron 55.0%
AGCACACTTCTGCTGCGAGT+AGG - chr8.1:73236526-73236545 None:intergenic 55.0%
CACACTTCTGCTGCGAGTAG+GGG - chr8.1:73236524-73236543 None:intergenic 55.0%
CCTTCTCGAGCAGCACACAT+TGG + chr8.1:73234802-73234821 MS.gene019711:CDS 55.0%
CGCAACCTGCTAATCCCGTA+TGG - chr8.1:73234218-73234237 None:intergenic 55.0%
GAGGCCTTGGCAGCAAACTT+TGG - chr8.1:73235576-73235595 None:intergenic 55.0%
GCACACTTCTGCTGCGAGTA+GGG - chr8.1:73236525-73236544 None:intergenic 55.0%
TCTGCTGCGAGTAGGGGTTT+GGG - chr8.1:73236518-73236537 None:intergenic 55.0%
TTCTGCTGCGAGTAGGGGTT+TGG - chr8.1:73236519-73236538 None:intergenic 55.0%
! AACCGGACTGGAGGTTGAAC+CGG - chr8.1:73234092-73234111 None:intergenic 55.0%
! CCAATGTGTGCTGCTCGAGA+AGG - chr8.1:73234805-73234824 None:intergenic 55.0%
!! AAGTTTGCTGCCAAGGCCTC+TGG + chr8.1:73235576-73235595 MS.gene019711:CDS 55.0%
AAACATTGGGCGGCACACGC+AGG + chr8.1:73235818-73235837 MS.gene019711:CDS 60.0%
AACATTGGGCGGCACACGCA+GGG + chr8.1:73235819-73235838 MS.gene019711:CDS 60.0%
CACTGTGACCGCATAACGCG+AGG - chr8.1:73233655-73233674 None:intergenic 60.0%
CTGCATGCAACGGCTGCATC+GGG + chr8.1:73233702-73233721 MS.gene019711:intron 60.0%
GACTGGAGGTTGAACCGGTG+AGG - chr8.1:73234087-73234106 None:intergenic 60.0%
GAGCTTCGTCAACGCCTTGC+AGG + chr8.1:73233319-73233338 MS.gene019711:CDS 60.0%
GTGCCGCCCAATGTTTGCAC+AGG - chr8.1:73235814-73235833 None:intergenic 60.0%
TGTGACCGCATAACGCGAGG+CGG - chr8.1:73233652-73233671 None:intergenic 60.0%
TTGGACCGCCTCGCGTTATG+CGG + chr8.1:73233644-73233663 MS.gene019711:intron 60.0%
!! AGTGGCGGTGCCACGTTTGA+TGG + chr8.1:73235871-73235890 MS.gene019711:intron 60.0%
!! CACCGGTTCAACCTCCAGTC+CGG + chr8.1:73234087-73234106 MS.gene019711:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 73233239 73236603 73233239 ID=MS.gene019711
chr8.1 mRNA 73233239 73236603 73233239 ID=MS.gene019711.t1;Parent=MS.gene019711
chr8.1 exon 73233239 73233340 73233239 ID=MS.gene019711.t1.exon1;Parent=MS.gene019711.t1
chr8.1 CDS 73233239 73233340 73233239 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
chr8.1 exon 73234364 73234446 73234364 ID=MS.gene019711.t1.exon2;Parent=MS.gene019711.t1
chr8.1 CDS 73234364 73234446 73234364 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
chr8.1 exon 73234715 73234865 73234715 ID=MS.gene019711.t1.exon3;Parent=MS.gene019711.t1
chr8.1 CDS 73234715 73234865 73234715 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
chr8.1 exon 73234948 73235047 73234948 ID=MS.gene019711.t1.exon4;Parent=MS.gene019711.t1
chr8.1 CDS 73234948 73235047 73234948 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
chr8.1 exon 73235162 73235254 73235162 ID=MS.gene019711.t1.exon5;Parent=MS.gene019711.t1
chr8.1 CDS 73235162 73235254 73235162 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
chr8.1 exon 73235372 73235456 73235372 ID=MS.gene019711.t1.exon6;Parent=MS.gene019711.t1
chr8.1 CDS 73235372 73235456 73235372 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
chr8.1 exon 73235563 73235615 73235563 ID=MS.gene019711.t1.exon7;Parent=MS.gene019711.t1
chr8.1 CDS 73235563 73235615 73235563 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
chr8.1 exon 73235734 73235840 73235734 ID=MS.gene019711.t1.exon8;Parent=MS.gene019711.t1
chr8.1 CDS 73235734 73235840 73235734 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
chr8.1 exon 73236445 73236603 73236445 ID=MS.gene019711.t1.exon9;Parent=MS.gene019711.t1
chr8.1 CDS 73236445 73236603 73236445 ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1
Gene Sequence

>MS.gene019711

ATGGAGTTTGAGCATTCAACGACGACGTTTCATAACTCCTCCGCCATGACTTTTGATGAAGTCTCCATGGAACGTAGTAAGAGCTTCGTCAACGCCTTGCAGGTTCTCTTTCTTTCTCTCTCATAATTCTCACTTTTTTTCAACTTTTTTTCTTAATTTTAATTTTAGTATTTTTTTTGCTAAGTTCAGATCTGCATTTGTTAGGTGGACTTTGTATCTGGTGAATGTTGGGAAAACTAATCTCATAAGGCTTTTAATTTTGAGTTTAATTCTTTGCAAATCACGTGTGCGACTTTAGAAGTAGTTATGATTAAAGCCATAAGTTTTTAATGATCTGACGGTTAAAATTGATAGTGTAAACAAAATTTACACTTATAGTGTATATGAATTATTTTTTATTTTATTTTGGACCGCCTCGCGTTATGCGGTCACAGTGAAATATGCATCACAACAATGAAGCGTACTGCATGCAACGGCTGCATCGGGCTGTAACAGACTGTATAATTCATACATAATCTTTCAGAGATTTAGAGGATATTTTAAAGGATAAATAATTTAGGATTTTAACAGTAATTGGGATTGTTTAGCATGATATCCTGAATAATGAGATGATGGGAAATTTGCAACTAAAGTTAATGGAATGTAGTCTAAACCAAGGTTTTAAAAACTGAAATGGACAGTTCAATTGGAAACTGGCAAGTTCGTTGGTCGGTTTGATTCTAGTTATACCTTAGTTTGGTTGAACCAGGATAAGATAGGTTCAATTGCTGTTGGTTCAACCGGTTGTTATTTTTTACATTCTCTTTGTTATTCTGTTTAACAATCATTGAACCATAACTGAAAAGCCTCACCGGTTCAACCTCCAGTCCGGTTTTTAAAACATTGGTCTAAAAGTAGCTATTTGTCGAGTCAGGATTCAAATGGTACTATTAATAAGGTGACTTCCAATGTAGCATAATAGTTATCACTGTATAAGCCATACGGGATTAGCAGGTTGCGTAATTTCTAATGTTATTGTTTGACTTCTTTTTTTGCCATCTACTTTTTGTCCTCTTTGATTGTTGCGGATACTATTTTGAAACGTGCGTGGACAGTCATTTGATCCTCATATTTTGGTCATTTCAGGAACTTAAGAACCTGCGGCCTCAACTTTATTCTGCTGCAGAATACTGTGAAAAATCTTATCTCCATAGTGAACAGAAACAAATGTAAGGATTTCCTTTTTGTTAATGGTTTTTTTCCTTAAACTTTTTCTTGAAGGCAACCTTAACCTCTTCTAGTATCCCTAAAAGTATATGGGAATTTTGAGTCCCTAGAAATATTGGTGACTAGTTGGGGTGGGTTCCTTTAGTAGCATAGGATCATCCGTAGTCTTCTGGTAGATATAAACGGGTGCCATTGTCGATAAGACGATAACATTTTCATGTTTTTGAGCTATGTTGAGTTTTCCTTAGCAGTATGTTATTAATGTATTAGGGTACTTGACAACTTGAAAGATTATGCTGTAAGAGCCCTTGTGAATGCTGTTGATCATCTTGGAACTGTTGCATACAAGTTAACTGACCTTCTCGAGCAGCACACATTGGATGTCTCAACTATGGGTTTGAAGGTCTCTACAATAAATCAGGTAATTACAGCATTTTTTAGATGATATGTTTTGATAGACAATTATATTTTGGAGTTGAAATAACATATTTTCTTAATAGCAGAAACTTCATACTTGCCAAATTTACACGGATAAAGAAGGTCTTCGGCAGCAGCAATTGCTCGCTTTCATTCCCAGACATCATAAGCACTATATTTTGCCAAGTAGGTTTCACTGCTTTTATGTTCATCTGGATGTGATTATTGCCGCCACTACATATCGATACTGGTAGTTTTTACTAATGATTCTCTGCATGTTTGTTTAACAATGCAAGCTAGATTCTGTCAATAAAAAGGTGCATTTCAGTCCACACATACAGATCGACGCAAAACAGAATTCGTTTCAGACCAGAACTCGTTTTCAACCTTCAGGTGTGTCTTGGAGTAAATTTTATCCCTCCTTGAGTTTTTGGGATTGATTTTAACAGTGGTACTTTTTTCATAAGTGAATAGTGTAGTATTAATAAGAATATATACTTTTATATCTAGGTACCCCTCCAGCAAAAACTCTTTCATGGCATTTAGCATCAGAGACTAAGTCTACATTGAAAGGGACTCCGCAGGCTTCCCCAAAGTAAGTTCAGGAAAATTTTATAGAATGAGGCTGTACAATGTTGCTGTGTTTTCTGTTATCAGCTCTAAACATGAATGGCATTATCATATGACATCTTCTTTTGCAGCATCGAGAACCCAAAGTTTGCTGCCAAGGCCTCTGGATATTTCCATCTTTTAGGTTTGTGATATAGTTGTATCTCTTGTATACATAATAATTCAGTTAAATTAGCCAAGCGTTGATTATTTCTTTATGTATAAATTATATCTCCTTATAGTCTTTGGTTATGTGCCTACAGATAATGAAGAGAGCACTTGGATGAAATCCTCACCAGCACAAACTCACTTACCGAATGGAGTTCCTACTTCTACTATACCTGTGCAAACATTGGGCGGCACACGCAGGGTAATTGCATATTATTTATCAAGAACTGAAAGTGGCGGTGCCACGTTTGATGGCCAACTTGTGATTATCACTTACCTATACTTTGCTTGTTGTTTGCCAGTGTTCTAAAACCTGTTTGTTAATCTTTTGCTGAAATTGCTTAGCTAGGCTTGATTAAAAAGGAAAAAGGTGTTGATAATTATAGCAGGTTACTTAAGAATACTGCTTCATATTAAGTCCAGGCCATTGTTCTTTACCTCTTTCACCAATATAAGTTTTTGGCAAGAAATGATTGATTGAGAGGTGTTTTCCTCTAGTCCTTAGGTAGAAGCAGCTCGTATTTTTAGTATTATGTTCTTACCGAACAATATAGCAGTGAATATTTTACGGGCTGGGAAAAAATATTCTTCATTTTATTTGACTTGCACCGAACCCAATATATGTTACCGTAGTCTACCAATTAGTGAACCAAATATTTGATACAGTCGTCAATATTTCCAGCTAGCAATTTTTGTTTGACTACTATAGTTGAAGAGTACATTTATTCATGTTTCCTTTGTTTTTCTAAAATAAAATCTGAAATAGTTTTTTTGTTAACAAGTTACTCATAAGTCTCTATCTGCAGGATGCATCGGATGGTTCCAAACCAATAGCAGGGTTCAGGTCATTTGACAACGCATATCGCCGTGAGTCTTCCCAAACCCCTACTCGCAGCAGAAGTGTGCTATCAGCTTTCTTTGTCAAGCAGAAAACACCAAAATTGAAGACTGGTTCTTTCTCATGA

Protein sequence

>MS.gene019711.t1

MEFEHSTTTFHNSSAMTFDEVSMERSKSFVNALQELKNLRPQLYSAAEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQHTLDVSTMGLKVSTINQKLHTCQIYTDKEGLRQQQLLAFIPRHHKHYILPNSVNKKVHFSPHIQIDAKQNSFQTRTRFQPSGTPPAKTLSWHLASETKSTLKGTPQASPNIENPKFAAKASGYFHLLDNEESTWMKSSPAQTHLPNGVPTSTIPVQTLGGTRRDASDGSKPIAGFRSFDNAYRRESSQTPTRSRSVLSAFFVKQKTPKLKTGSFS