Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019711.t1 | XP_013444744.1 | 98.1 | 310 | 6 | 0 | 1 | 310 | 1 | 310 | 2.80E-167 | 597.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019711.t1 | Q8S8M5 | 61.2 | 299 | 107 | 2 | 12 | 310 | 9 | 298 | 1.3e-91 | 337.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019711.t1 | A0A072TMP7 | 98.1 | 310 | 6 | 0 | 1 | 310 | 1 | 310 | 2.0e-167 | 597.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene019711 | MS.gene059163 | PPI |
MS.gene31641 | MS.gene019711 | PPI |
MS.gene019711 | MS.gene057119 | PPI |
MS.gene019711 | MS.gene021449 | PPI |
MS.gene06693 | MS.gene019711 | PPI |
MS.gene059164 | MS.gene019711 | PPI |
MS.gene019711 | MS.gene06902 | PPI |
MS.gene019711 | MS.gene013576 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019711.t1 | MTR_8g028410 | 98.065 | 310 | 6 | 0 | 1 | 310 | 1 | 310 | 0.0 | 632 |
MS.gene019711.t1 | MTR_8g028410 | 93.478 | 276 | 17 | 1 | 1 | 275 | 1 | 276 | 0.0 | 530 |
MS.gene019711.t1 | MTR_8g028410 | 98.198 | 222 | 4 | 0 | 1 | 222 | 1 | 222 | 1.53e-163 | 454 |
MS.gene019711.t1 | MTR_8g028410 | 98.039 | 204 | 4 | 0 | 1 | 204 | 1 | 204 | 2.41e-149 | 417 |
MS.gene019711.t1 | MTR_7g116710 | 70.205 | 292 | 86 | 1 | 20 | 310 | 2 | 293 | 2.31e-147 | 416 |
MS.gene019711.t1 | MTR_3g091760 | 50.714 | 140 | 69 | 0 | 6 | 145 | 7 | 146 | 8.43e-42 | 145 |
MS.gene019711.t1 | MTR_3g091760 | 50.714 | 140 | 69 | 0 | 6 | 145 | 7 | 146 | 9.40e-42 | 147 |
MS.gene019711.t1 | MTR_1g007880 | 52.672 | 131 | 62 | 0 | 15 | 145 | 13 | 143 | 1.09e-41 | 147 |
MS.gene019711.t1 | MTR_1g007880 | 52.672 | 131 | 62 | 0 | 15 | 145 | 32 | 162 | 2.83e-41 | 146 |
MS.gene019711.t1 | MTR_6g087680 | 37.063 | 143 | 85 | 2 | 1 | 143 | 1 | 138 | 1.10e-24 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019711.t1 | AT2G46225 | 61.824 | 296 | 104 | 2 | 15 | 310 | 12 | 298 | 5.90e-126 | 362 |
MS.gene019711.t1 | AT2G46225 | 56.269 | 327 | 103 | 3 | 15 | 310 | 12 | 329 | 7.05e-121 | 350 |
MS.gene019711.t1 | AT2G46225 | 59.797 | 296 | 98 | 3 | 15 | 310 | 12 | 286 | 4.99e-117 | 339 |
MS.gene019711.t1 | AT3G49290 | 34.951 | 309 | 173 | 6 | 15 | 306 | 7 | 304 | 1.40e-44 | 154 |
MS.gene019711.t1 | AT3G49290 | 34.951 | 309 | 173 | 6 | 15 | 306 | 7 | 304 | 1.40e-44 | 154 |
MS.gene019711.t1 | AT5G24310 | 51.095 | 137 | 67 | 0 | 15 | 151 | 7 | 143 | 1.00e-42 | 147 |
MS.gene019711.t1 | AT5G24310 | 51.095 | 137 | 67 | 0 | 15 | 151 | 13 | 149 | 1.04e-42 | 149 |
MS.gene019711.t1 | AT5G24310 | 51.095 | 137 | 67 | 0 | 15 | 151 | 7 | 143 | 1.38e-42 | 149 |
MS.gene019711.t1 | AT5G24310 | 51.095 | 137 | 67 | 0 | 15 | 151 | 13 | 149 | 1.50e-42 | 149 |
MS.gene019711.t1 | AT5G42030 | 45.669 | 127 | 69 | 0 | 19 | 145 | 18 | 144 | 2.62e-32 | 119 |
MS.gene019711.t1 | AT5G42030 | 45.669 | 127 | 69 | 0 | 19 | 145 | 18 | 144 | 2.93e-32 | 121 |
MS.gene019711.t1 | AT5G42030 | 45.669 | 127 | 69 | 0 | 19 | 145 | 18 | 144 | 4.22e-31 | 119 |
MS.gene019711.t1 | AT5G42030 | 42.169 | 83 | 48 | 0 | 63 | 145 | 15 | 97 | 1.27e-16 | 77.8 |
Find 66 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTTATCCGTGTAAATT+TGG | 0.160073 | 8.1:-73234962 | None:intergenic |
AAAGAACCAGTCTTCAATTT+TGG | 0.182937 | 8.1:-73236574 | None:intergenic |
TTCTGCTGCGAGTAGGGGTT+TGG | 0.286640 | 8.1:-73236516 | None:intergenic |
CACATTGGATGTCTCAACTA+TGG | 0.289380 | 8.1:+73234817 | MS.gene019711:CDS |
GCTAGATTCTGTCAATAAAA+AGG | 0.289771 | 8.1:+73235157 | MS.gene019711:intron |
GAGCTTCGTCAACGCCTTGC+AGG | 0.320261 | 8.1:+73233319 | MS.gene019711:CDS |
AATATAGTGCTTATGATGTC+TGG | 0.340309 | 8.1:-73235018 | None:intergenic |
ACATTTGTTTCTGTTCACTA+TGG | 0.343405 | 8.1:-73234426 | None:intergenic |
TGAAGGTTGAAAACGAGTTC+TGG | 0.380922 | 8.1:-73235231 | None:intergenic |
CCTGAACCCTGCTATTGGTT+TGG | 0.382157 | 8.1:-73236461 | None:intergenic |
GTGAATGCTGTTGATCATCT+TGG | 0.389419 | 8.1:+73234755 | MS.gene019711:CDS |
AGGCCTTGGCAGCAAACTTT+GGG | 0.391332 | 8.1:-73235572 | None:intergenic |
AATGACCTGAACCCTGCTAT+TGG | 0.406748 | 8.1:-73236466 | None:intergenic |
GAGGCCTTGGCAGCAAACTT+TGG | 0.406813 | 8.1:-73235573 | None:intergenic |
AAGTTTGCTGCCAAGGCCTC+TGG | 0.411813 | 8.1:+73235576 | MS.gene019711:CDS |
GAAGGTCTCTACAATAAATC+AGG | 0.422241 | 8.1:+73234844 | MS.gene019711:CDS |
TCTGCTGCGAGTAGGGGTTT+GGG | 0.427185 | 8.1:-73236515 | None:intergenic |
CCAAACCAATAGCAGGGTTC+AGG | 0.435252 | 8.1:+73236461 | MS.gene019711:CDS |
GCACACTTCTGCTGCGAGTA+GGG | 0.445501 | 8.1:-73236522 | None:intergenic |
TACTATACCTGTGCAAACAT+TGG | 0.461592 | 8.1:+73235804 | MS.gene019711:CDS |
ATGGAAATATCCAGAGGCCT+TGG | 0.471970 | 8.1:-73235586 | None:intergenic |
TGTCTCAACTATGGGTTTGA+AGG | 0.472051 | 8.1:+73234826 | MS.gene019711:CDS |
ACTATACCTGTGCAAACATT+GGG | 0.475691 | 8.1:+73235805 | MS.gene019711:CDS |
CAAATTTACACGGATAAAGA+AGG | 0.478833 | 8.1:+73234963 | MS.gene019711:CDS |
CAGATAATGAAGAGAGCACT+TGG | 0.490925 | 8.1:+73235731 | MS.gene019711:intron |
GAACCCAAAGTTTGCTGCCA+AGG | 0.491049 | 8.1:+73235569 | MS.gene019711:CDS |
ACACGGATAAAGAAGGTCTT+CGG | 0.492480 | 8.1:+73234970 | MS.gene019711:CDS |
TATATCACAAACCTAAAAGA+TGG | 0.496438 | 8.1:-73235605 | None:intergenic |
GAGACTAAGTCTACATTGAA+AGG | 0.510089 | 8.1:+73235413 | MS.gene019711:CDS |
AAACATTGGGCGGCACACGC+AGG | 0.515733 | 8.1:+73235818 | MS.gene019711:CDS |
GATGGTTCCAAACCAATAGC+AGG | 0.518252 | 8.1:+73236454 | MS.gene019711:CDS |
ATATAGTGCTTATGATGTCT+GGG | 0.525673 | 8.1:-73235017 | None:intergenic |
ACATTGGATGTCTCAACTAT+GGG | 0.540656 | 8.1:+73234818 | MS.gene019711:CDS |
AGACTAAGTCTACATTGAAA+GGG | 0.542962 | 8.1:+73235414 | MS.gene019711:CDS |
GAAGCTCTTACTACGTTCCA+TGG | 0.545325 | 8.1:-73233303 | None:intergenic |
TTCGGTAAGTGAGTTTGTGC+TGG | 0.547539 | 8.1:-73235766 | None:intergenic |
GTGCCGCCCAATGTTTGCAC+AGG | 0.548635 | 8.1:-73235811 | None:intergenic |
CAGAATAAAGTTGAGGCCGC+AGG | 0.550806 | 8.1:-73234375 | None:intergenic |
TCTCTATCTGCAGGATGCAT+CGG | 0.551390 | 8.1:+73236432 | MS.gene019711:intron |
CCTTCTCGAGCAGCACACAT+TGG | 0.563073 | 8.1:+73234802 | MS.gene019711:CDS |
AAAACACCAAAATTGAAGAC+TGG | 0.564233 | 8.1:+73236568 | MS.gene019711:CDS |
CACACTTCTGCTGCGAGTAG+GGG | 0.571389 | 8.1:-73236521 | None:intergenic |
TCATACTTGCCAAATTTACA+CGG | 0.581952 | 8.1:+73234953 | MS.gene019711:CDS |
AACATTGGGCGGCACACGCA+GGG | 0.582037 | 8.1:+73235819 | MS.gene019711:CDS |
CCAATGTGTGCTGCTCGAGA+AGG | 0.587460 | 8.1:-73234802 | None:intergenic |
AGCACACTTCTGCTGCGAGT+AGG | 0.594368 | 8.1:-73236523 | None:intergenic |
GTAGAAGTAGGAACTCCATT+CGG | 0.599009 | 8.1:-73235784 | None:intergenic |
TTCATCAAAAGTCATGGCGG+AGG | 0.601913 | 8.1:-73233276 | None:intergenic |
ACTTACTTTGGGGAAGCCTG+CGG | 0.603022 | 8.1:-73235440 | None:intergenic |
GGAGACTTCATCAAAAGTCA+TGG | 0.603789 | 8.1:-73233282 | None:intergenic |
TTCAGGAACTTAAGAACCTG+CGG | 0.603957 | 8.1:+73234359 | MS.gene019711:intron |
TATCTGCAGGATGCATCGGA+TGG | 0.604425 | 8.1:+73236436 | MS.gene019711:intron |
GATGATCAACAGCATTCACA+AGG | 0.607218 | 8.1:-73234751 | None:intergenic |
TACATTGAAAGGGACTCCGC+AGG | 0.609945 | 8.1:+73235424 | MS.gene019711:CDS |
GCACAAACTCACTTACCGAA+TGG | 0.611697 | 8.1:+73235769 | MS.gene019711:CDS |
TAAGTGAGTTTGTGCTGGTG+AGG | 0.618548 | 8.1:-73235761 | None:intergenic |
TGCACAGGTATAGTAGAAGT+AGG | 0.619217 | 8.1:-73235796 | None:intergenic |
AGAAAGAAAGAGAACCTGCA+AGG | 0.625608 | 8.1:-73233333 | None:intergenic |
ATACCTGTGCAAACATTGGG+CGG | 0.626367 | 8.1:+73235808 | MS.gene019711:CDS |
TAGGGGTTTGGGAAGACTCA+CGG | 0.630972 | 8.1:-73236504 | None:intergenic |
TTTGCGTCGATCTGTATGTG+TGG | 0.647834 | 8.1:-73235191 | None:intergenic |
ATGGTTCCAAACCAATAGCA+GGG | 0.652302 | 8.1:+73236455 | MS.gene019711:CDS |
TAAAAGATGGAAATATCCAG+AGG | 0.674280 | 8.1:-73235592 | None:intergenic |
TCTGCAGCAGAATAAAGTTG+AGG | 0.685730 | 8.1:-73234382 | None:intergenic |
ATGATCAACAGCATTCACAA+GGG | 0.712548 | 8.1:-73234750 | None:intergenic |
GACTTCATCAAAAGTCATGG+CGG | 0.712815 | 8.1:-73233279 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATTTTTTATTTTATTT+TGG | + | chr8.1:73233625-73233644 | MS.gene019711:intron | 0.0% |
!!! | ATTTTATTTTAGAAAAACAA+AGG | - | chr8.1:73236376-73236395 | None:intergenic | 10.0% |
!!! | TTTTAAAGGATAAATAATTT+AGG | + | chr8.1:73233776-73233795 | MS.gene019711:intron | 10.0% |
!! | AGTATGTTATTAATGTATTA+GGG | + | chr8.1:73234694-73234713 | MS.gene019711:intron | 15.0% |
!!! | GAATATATACTTTTATATCT+AGG | + | chr8.1:73235350-73235369 | MS.gene019711:intron | 15.0% |
!!! | TTTGATAGACAATTATATTT+TGG | + | chr8.1:73234895-73234914 | MS.gene019711:intron | 15.0% |
!! | AAATTTGCAACTAAAGTTAA+TGG | + | chr8.1:73233855-73233874 | MS.gene019711:intron | 20.0% |
!! | AGAATGTAAAAAATAACAAC+CGG | - | chr8.1:73234021-73234040 | None:intergenic | 20.0% |
!! | CAGTATGTTATTAATGTATT+AGG | + | chr8.1:73234693-73234712 | MS.gene019711:intron | 20.0% |
!! | GAAAAAAACCATTAACAAAA+AGG | - | chr8.1:73234460-73234479 | None:intergenic | 20.0% |
!! | TTCAAATGGTACTATTAATA+AGG | + | chr8.1:73234154-73234173 | MS.gene019711:intron | 20.0% |
!!! | AAAATTCCCATATACTTTTA+GGG | - | chr8.1:73234525-73234544 | None:intergenic | 20.0% |
!!! | AGATTTAGAGGATATTTTAA+AGG | + | chr8.1:73233762-73233781 | MS.gene019711:intron | 20.0% |
!!! | ATAAGTTTTTAATGATCTGA+CGG | + | chr8.1:73233557-73233576 | MS.gene019711:intron | 20.0% |
!!! | ATATAGCAGTGAATATTTTA+CGG | + | chr8.1:73236187-73236206 | MS.gene019711:intron | 20.0% |
!!! | TTAGGATTTTAACAGTAATT+GGG | + | chr8.1:73233794-73233813 | MS.gene019711:intron | 20.0% |
!!! | TTTAGGATTTTAACAGTAAT+TGG | + | chr8.1:73233793-73233812 | MS.gene019711:intron | 20.0% |
! | AAAACTTATATTGGTGAAAG+AGG | - | chr8.1:73236079-73236098 | None:intergenic | 25.0% |
! | ACATTAATAACATACTGCTA+AGG | - | chr8.1:73234690-73234709 | None:intergenic | 25.0% |
! | ATAAAGAAATAATCAACGCT+TGG | - | chr8.1:73235670-73235689 | None:intergenic | 25.0% |
! | ATAATCTTTCAGAGATTTAG+AGG | + | chr8.1:73233750-73233769 | MS.gene019711:intron | 25.0% |
! | ATATTCACTGCTATATTGTT+CGG | - | chr8.1:73236183-73236202 | None:intergenic | 25.0% |
! | GTCAGATCATTAAAAACTTA+TGG | - | chr8.1:73233558-73233577 | None:intergenic | 25.0% |
! | TATATCACAAACCTAAAAGA+TGG | - | chr8.1:73235608-73235627 | None:intergenic | 25.0% |
! | TATTTATCAAGAACTGAAAG+TGG | + | chr8.1:73235853-73235872 | MS.gene019711:intron | 25.0% |
! | TGATAACTATTATGCTACAT+TGG | - | chr8.1:73234186-73234205 | None:intergenic | 25.0% |
! | TTATATCTCCTTATAGTCTT+TGG | + | chr8.1:73235697-73235716 | MS.gene019711:intron | 25.0% |
! | TTCTTGCCAAAAACTTATAT+TGG | - | chr8.1:73236088-73236107 | None:intergenic | 25.0% |
!! | AAATTTTCCTGAACTTACTT+TGG | - | chr8.1:73235455-73235474 | None:intergenic | 25.0% |
!! | AAGGATTTCCTTTTTGTTAA+TGG | + | chr8.1:73234449-73234468 | MS.gene019711:intron | 25.0% |
!! | AATTTTCCTGAACTTACTTT+GGG | - | chr8.1:73235454-73235473 | None:intergenic | 25.0% |
!! | ATTCTAGTTATACCTTAGTT+TGG | + | chr8.1:73233955-73233974 | MS.gene019711:intron | 25.0% |
!! | CAAAATTCCCATATACTTTT+AGG | - | chr8.1:73234526-73234545 | None:intergenic | 25.0% |
!! | CAAATATTTGGTTCACTAAT+TGG | - | chr8.1:73236279-73236298 | None:intergenic | 25.0% |
!! | CAGGAAAATTTTATAGAATG+AGG | + | chr8.1:73235464-73235483 | MS.gene019711:intron | 25.0% |
!! | CTTTCACCAATATAAGTTTT+TGG | + | chr8.1:73236079-73236098 | MS.gene019711:intron | 25.0% |
!! | TAGTATCCCTAAAAGTATAT+GGG | + | chr8.1:73234516-73234535 | MS.gene019711:intron | 25.0% |
!! | TATAGCAGTGAATATTTTAC+GGG | + | chr8.1:73236188-73236207 | MS.gene019711:intron | 25.0% |
!!! | CAAGGTTTTAAAAACTGAAA+TGG | + | chr8.1:73233892-73233911 | MS.gene019711:intron | 25.0% |
!!! | CATTTCAGTTTTTAAAACCT+TGG | - | chr8.1:73233894-73233913 | None:intergenic | 25.0% |
!!! | TAGACCAATGTTTTAAAAAC+CGG | - | chr8.1:73234109-73234128 | None:intergenic | 25.0% |
!!! | TTCCTTAAACTTTTTCTTGA+AGG | + | chr8.1:73234477-73234496 | MS.gene019711:intron | 25.0% |
AAAACACCAAAATTGAAGAC+TGG | + | chr8.1:73236568-73236587 | MS.gene019711:CDS | 30.0% | |
AAATCAATCCCAAAAACTCA+AGG | - | chr8.1:73235285-73235304 | None:intergenic | 30.0% | |
AACTAGTCACCAATATTTCT+AGG | - | chr8.1:73234553-73234572 | None:intergenic | 30.0% | |
AATATAGTGCTTATGATGTC+TGG | - | chr8.1:73235021-73235040 | None:intergenic | 30.0% | |
AGACTAAGTCTACATTGAAA+GGG | + | chr8.1:73235414-73235433 | MS.gene019711:CDS | 30.0% | |
AGACTACGGTAACATATATT+GGG | - | chr8.1:73236255-73236274 | None:intergenic | 30.0% | |
AGTCTTCTGGTAGATATAAA+CGG | + | chr8.1:73234608-73234627 | MS.gene019711:intron | 30.0% | |
AGTGAACAGAAACAAATGTA+AGG | + | chr8.1:73234430-73234449 | MS.gene019711:intron | 30.0% | |
ATATAGTGCTTATGATGTCT+GGG | - | chr8.1:73235020-73235039 | None:intergenic | 30.0% | |
ATCCTGAATAATGAGATGAT+GGG | + | chr8.1:73233832-73233851 | MS.gene019711:intron | 30.0% | |
CAAATTTACACGGATAAAGA+AGG | + | chr8.1:73234963-73234982 | MS.gene019711:CDS | 30.0% | |
CTTCTTTATCCGTGTAAATT+TGG | - | chr8.1:73234965-73234984 | None:intergenic | 30.0% | |
GCTAGATTCTGTCAATAAAA+AGG | + | chr8.1:73235157-73235176 | MS.gene019711:intron | 30.0% | |
GGCTTGATTAAAAAGGAAAA+AGG | + | chr8.1:73235987-73236006 | MS.gene019711:intron | 30.0% | |
TAAAAGATGGAAATATCCAG+AGG | - | chr8.1:73235595-73235614 | None:intergenic | 30.0% | |
TAGACTACGGTAACATATAT+TGG | - | chr8.1:73236256-73236275 | None:intergenic | 30.0% | |
TATCCTGAATAATGAGATGA+TGG | + | chr8.1:73233831-73233850 | MS.gene019711:intron | 30.0% | |
TCAGCAAAAGATTAACAAAC+AGG | - | chr8.1:73235954-73235973 | None:intergenic | 30.0% | |
TCATACTTGCCAAATTTACA+CGG | + | chr8.1:73234953-73234972 | MS.gene019711:CDS | 30.0% | |
TGACGACTGTATCAAATATT+TGG | - | chr8.1:73236291-73236310 | None:intergenic | 30.0% | |
TGCCTTCAAGAAAAAGTTTA+AGG | - | chr8.1:73234482-73234501 | None:intergenic | 30.0% | |
TTAGCTAGGCTTGATTAAAA+AGG | + | chr8.1:73235980-73235999 | MS.gene019711:intron | 30.0% | |
TTATATCTACCAGAAGACTA+CGG | - | chr8.1:73234607-73234626 | None:intergenic | 30.0% | |
TTATCACTGTATAAGCCATA+CGG | + | chr8.1:73234200-73234219 | MS.gene019711:intron | 30.0% | |
TTGGGAAAACTAATCTCATA+AGG | + | chr8.1:73233466-73233485 | MS.gene019711:intron | 30.0% | |
! | AAAGAACCAGTCTTCAATTT+TGG | - | chr8.1:73236577-73236596 | None:intergenic | 30.0% |
! | ACTAGTCACCAATATTTCTA+GGG | - | chr8.1:73234552-73234571 | None:intergenic | 30.0% |
! | AGAAATATTGGTGACTAGTT+GGG | + | chr8.1:73234553-73234572 | MS.gene019711:intron | 30.0% |
! | ATTTTCCTGAACTTACTTTG+GGG | - | chr8.1:73235453-73235472 | None:intergenic | 30.0% |
! | CTAGTATCCCTAAAAGTATA+TGG | + | chr8.1:73234515-73234534 | MS.gene019711:intron | 30.0% |
! | GTCATTTGATCCTCATATTT+TGG | + | chr8.1:73234332-73234351 | MS.gene019711:intron | 30.0% |
! | TAGAAATATTGGTGACTAGT+TGG | + | chr8.1:73234552-73234571 | MS.gene019711:intron | 30.0% |
! | TCTGGATATTTCCATCTTTT+AGG | + | chr8.1:73235594-73235613 | MS.gene019711:CDS | 30.0% |
!! | AAGGTGTTGATAATTATAGC+AGG | + | chr8.1:73236006-73236025 | MS.gene019711:intron | 30.0% |
!! | ACATTTGTTTCTGTTCACTA+TGG | - | chr8.1:73234429-73234448 | None:intergenic | 30.0% |
!! | TTATCAGCTCTAAACATGAA+TGG | + | chr8.1:73235512-73235531 | MS.gene019711:intron | 30.0% |
!! | TTTGGGATTGATTTTAACAG+TGG | + | chr8.1:73235291-73235310 | MS.gene019711:intron | 30.0% |
!! | TTTTGAGTCCCTAGAAATAT+TGG | + | chr8.1:73234541-73234560 | MS.gene019711:intron | 30.0% |
AAGATAGGTTCAATTGCTGT+TGG | + | chr8.1:73233990-73234009 | MS.gene019711:intron | 35.0% | |
ACATTGGATGTCTCAACTAT+GGG | + | chr8.1:73234818-73234837 | MS.gene019711:CDS | 35.0% | |
ACGGTAACATATATTGGGTT+CGG | - | chr8.1:73236250-73236269 | None:intergenic | 35.0% | |
ACTATACCTGTGCAAACATT+GGG | + | chr8.1:73235805-73235824 | MS.gene019711:CDS | 35.0% | |
ACTGAAATGGACAGTTCAAT+TGG | + | chr8.1:73233905-73233924 | MS.gene019711:intron | 35.0% | |
ACTTTGTATCTGGTGAATGT+TGG | + | chr8.1:73233447-73233466 | MS.gene019711:intron | 35.0% | |
AGTTCAGATCTGCATTTGTT+AGG | + | chr8.1:73233421-73233440 | MS.gene019711:intron | 35.0% | |
ATGATCAACAGCATTCACAA+GGG | - | chr8.1:73234753-73234772 | None:intergenic | 35.0% | |
ATGGAATGTAGTCTAAACCA+AGG | + | chr8.1:73233874-73233893 | MS.gene019711:intron | 35.0% | |
CAAAGAGGACAAAAAGTAGA+TGG | - | chr8.1:73234276-73234295 | None:intergenic | 35.0% | |
CAATTGAACCTATCTTATCC+TGG | - | chr8.1:73233986-73234005 | None:intergenic | 35.0% | |
CCTGAAATGACCAAAATATG+AGG | - | chr8.1:73234345-73234364 | None:intergenic | 35.0% | |
CTTTGTATCTGGTGAATGTT+GGG | + | chr8.1:73233448-73233467 | MS.gene019711:intron | 35.0% | |
GAAGGTCTCTACAATAAATC+AGG | + | chr8.1:73234844-73234863 | MS.gene019711:CDS | 35.0% | |
GAGACTAAGTCTACATTGAA+AGG | + | chr8.1:73235413-73235432 | MS.gene019711:CDS | 35.0% | |
GCAAACAACAAGCAAAGTAT+AGG | - | chr8.1:73235918-73235937 | None:intergenic | 35.0% | |
GCAAGAAATGATTGATTGAG+AGG | + | chr8.1:73236101-73236120 | MS.gene019711:intron | 35.0% | |
GCACATAACCAAAGACTATA+AGG | - | chr8.1:73235708-73235727 | None:intergenic | 35.0% | |
GGTAAGTGATAATCACAAGT+TGG | - | chr8.1:73235897-73235916 | None:intergenic | 35.0% | |
GTCAAACAAAAATTGCTAGC+TGG | - | chr8.1:73236320-73236339 | None:intergenic | 35.0% | |
GTCTTCTGGTAGATATAAAC+GGG | + | chr8.1:73234609-73234628 | MS.gene019711:intron | 35.0% | |
GTGAAAGAGGTAAAGAACAA+TGG | - | chr8.1:73236066-73236085 | None:intergenic | 35.0% | |
GTTCACTAATTGGTAGACTA+CGG | - | chr8.1:73236269-73236288 | None:intergenic | 35.0% | |
TAAAAGCAGTGAAACCTACT+TGG | - | chr8.1:73235047-73235066 | None:intergenic | 35.0% | |
TACTATACCTGTGCAAACAT+TGG | + | chr8.1:73235804-73235823 | MS.gene019711:CDS | 35.0% | |
TACTGCTTCATATTAAGTCC+AGG | + | chr8.1:73236040-73236059 | MS.gene019711:intron | 35.0% | |
TATCACTGTATAAGCCATAC+GGG | + | chr8.1:73234201-73234220 | MS.gene019711:intron | 35.0% | |
TGTTATCGTCTTATCGACAA+TGG | - | chr8.1:73234637-73234656 | None:intergenic | 35.0% | |
TTATCAAGAACTGAAAGTGG+CGG | + | chr8.1:73235856-73235875 | MS.gene019711:intron | 35.0% | |
TTCCCATCATCTCATTATTC+AGG | - | chr8.1:73233837-73233856 | None:intergenic | 35.0% | |
TTTGCTGAAATTGCTTAGCT+AGG | + | chr8.1:73235966-73235985 | MS.gene019711:intron | 35.0% | |
TTTGTCCTCTTTGATTGTTG+CGG | + | chr8.1:73234283-73234302 | MS.gene019711:intron | 35.0% | |
! | AGCACTATATTTTGCCAAGT+AGG | + | chr8.1:73235030-73235049 | MS.gene019711:intron | 35.0% |
! | ATGAAAGAGTTTTTGCTGGA+GGG | - | chr8.1:73235379-73235398 | None:intergenic | 35.0% |
! | GAAATATTGGTGACTAGTTG+GGG | + | chr8.1:73234554-73234573 | MS.gene019711:intron | 35.0% |
! | TTATCCCTCCTTGAGTTTTT+GGG | + | chr8.1:73235274-73235293 | MS.gene019711:intron | 35.0% |
! | TTTATCCCTCCTTGAGTTTT+TGG | + | chr8.1:73235273-73235292 | MS.gene019711:intron | 35.0% |
!! | ACTTTTAGGGATACTAGAAG+AGG | - | chr8.1:73234512-73234531 | None:intergenic | 35.0% |
!! | TCACTGCTTTTATGTTCATC+TGG | + | chr8.1:73235055-73235074 | MS.gene019711:intron | 35.0% |
!!! | ACAAACAGGTTTTAGAACAC+TGG | - | chr8.1:73235940-73235959 | None:intergenic | 35.0% |
!!! | ATACTATTTTGAAACGTGCG+TGG | + | chr8.1:73234306-73234325 | MS.gene019711:intron | 35.0% |
!!! | CAATGTTTTAAAAACCGGAC+TGG | - | chr8.1:73234104-73234123 | None:intergenic | 35.0% |
!!! | CAGTCCGGTTTTTAAAACAT+TGG | + | chr8.1:73234102-73234121 | MS.gene019711:intron | 35.0% |
!!! | CCTCATATTTTGGTCATTTC+AGG | + | chr8.1:73234342-73234361 | MS.gene019711:intron | 35.0% |
AAGTAGCTATTTGTCGAGTC+AGG | + | chr8.1:73234130-73234149 | MS.gene019711:intron | 40.0% | |
ACACGGATAAAGAAGGTCTT+CGG | + | chr8.1:73234970-73234989 | MS.gene019711:CDS | 40.0% | |
ACTCATAAGTCTCTATCTGC+AGG | + | chr8.1:73236423-73236442 | MS.gene019711:intron | 40.0% | |
AGAAAGAAAGAGAACCTGCA+AGG | - | chr8.1:73233336-73233355 | None:intergenic | 40.0% | |
AGGGATACTAGAAGAGGTTA+AGG | - | chr8.1:73234506-73234525 | None:intergenic | 40.0% | |
AGTATCCGCAACAATCAAAG+AGG | - | chr8.1:73234291-73234310 | None:intergenic | 40.0% | |
ATCCTGGTTCAACCAAACTA+AGG | - | chr8.1:73233970-73233989 | None:intergenic | 40.0% | |
ATGGTTCCAAACCAATAGCA+GGG | + | chr8.1:73236455-73236474 | MS.gene019711:CDS | 40.0% | |
CAATCCCAAAAACTCAAGGA+GGG | - | chr8.1:73235281-73235300 | None:intergenic | 40.0% | |
CACATTGGATGTCTCAACTA+TGG | + | chr8.1:73234817-73234836 | MS.gene019711:CDS | 40.0% | |
CTCCAGCAAAAACTCTTTCA+TGG | + | chr8.1:73235378-73235397 | MS.gene019711:CDS | 40.0% | |
GACTTCATCAAAAGTCATGG+CGG | - | chr8.1:73233282-73233301 | None:intergenic | 40.0% | |
GATGATCAACAGCATTCACA+AGG | - | chr8.1:73234754-73234773 | None:intergenic | 40.0% | |
GGAGACTTCATCAAAAGTCA+TGG | - | chr8.1:73233285-73233304 | None:intergenic | 40.0% | |
GGATGATCCTATGCTACTAA+AGG | - | chr8.1:73234586-73234605 | None:intergenic | 40.0% | |
GTAGAAGTAGGAACTCCATT+CGG | - | chr8.1:73235787-73235806 | None:intergenic | 40.0% | |
GTGAATGCTGTTGATCATCT+TGG | + | chr8.1:73234755-73234774 | MS.gene019711:CDS | 40.0% | |
GTGCTCTCTTCATTATCTGT+AGG | - | chr8.1:73235730-73235749 | None:intergenic | 40.0% | |
TCAATCCCAAAAACTCAAGG+AGG | - | chr8.1:73235282-73235301 | None:intergenic | 40.0% | |
TCTGCAGCAGAATAAAGTTG+AGG | - | chr8.1:73234385-73234404 | None:intergenic | 40.0% | |
TGAAGGTTGAAAACGAGTTC+TGG | - | chr8.1:73235234-73235253 | None:intergenic | 40.0% | |
TGCACAGGTATAGTAGAAGT+AGG | - | chr8.1:73235799-73235818 | None:intergenic | 40.0% | |
TGGACAGTTCAATTGGAAAC+TGG | + | chr8.1:73233912-73233931 | MS.gene019711:intron | 40.0% | |
TGGTTGAACCAGGATAAGAT+AGG | + | chr8.1:73233975-73233994 | MS.gene019711:intron | 40.0% | |
TGTCTCAACTATGGGTTTGA+AGG | + | chr8.1:73234826-73234845 | MS.gene019711:CDS | 40.0% | |
TTCAGGAACTTAAGAACCTG+CGG | + | chr8.1:73234359-73234378 | MS.gene019711:intron | 40.0% | |
TTGTCGAGTCAGGATTCAAA+TGG | + | chr8.1:73234140-73234159 | MS.gene019711:intron | 40.0% | |
! | AGAACTCGTTTTCAACCTTC+AGG | + | chr8.1:73235233-73235252 | MS.gene019711:CDS | 40.0% |
! | CAGTGAATATTTTACGGGCT+GGG | + | chr8.1:73236193-73236212 | MS.gene019711:intron | 40.0% |
! | CATGAAAGAGTTTTTGCTGG+AGG | - | chr8.1:73235380-73235399 | None:intergenic | 40.0% |
! | GACTTTTGATGAAGTCTCCA+TGG | + | chr8.1:73233286-73233305 | MS.gene019711:CDS | 40.0% |
! | TACCTTAGTTTGGTTGAACC+AGG | + | chr8.1:73233965-73233984 | MS.gene019711:intron | 40.0% |
! | TCAGATCTGCATTTGTTAGG+TGG | + | chr8.1:73233424-73233443 | MS.gene019711:intron | 40.0% |
! | TGAAAGAGTTTTTGCTGGAG+GGG | - | chr8.1:73235378-73235397 | None:intergenic | 40.0% |
! | TGCCATGAAAGAGTTTTTGC+TGG | - | chr8.1:73235383-73235402 | None:intergenic | 40.0% |
! | TGTTAGGTGGACTTTGTATC+TGG | + | chr8.1:73233437-73233456 | MS.gene019711:intron | 40.0% |
!! | CAGATAATGAAGAGAGCACT+TGG | + | chr8.1:73235731-73235750 | MS.gene019711:intron | 40.0% |
!! | CTACCAGTATCGATATGTAG+TGG | - | chr8.1:73235096-73235115 | None:intergenic | 40.0% |
!! | TCAATTGCTGTTGGTTCAAC+CGG | + | chr8.1:73233999-73234018 | MS.gene019711:intron | 40.0% |
!!! | TGTTTTAAAAACCGGACTGG+AGG | - | chr8.1:73234101-73234120 | None:intergenic | 40.0% |
AAACTGGCAAGTTCGTTGGT+CGG | + | chr8.1:73233928-73233947 | MS.gene019711:intron | 45.0% | |
AATGACCTGAACCCTGCTAT+TGG | - | chr8.1:73236469-73236488 | None:intergenic | 45.0% | |
AGAGGTAAAGAACAATGGCC+TGG | - | chr8.1:73236061-73236080 | None:intergenic | 45.0% | |
ATACCTGTGCAAACATTGGG+CGG | + | chr8.1:73235808-73235827 | MS.gene019711:CDS | 45.0% | |
ATACGAGCTGCTTCTACCTA+AGG | - | chr8.1:73236141-73236160 | None:intergenic | 45.0% | |
ATGAAGCGTACTGCATGCAA+CGG | + | chr8.1:73233692-73233711 | MS.gene019711:intron | 45.0% | |
ATGGAAATATCCAGAGGCCT+TGG | - | chr8.1:73235589-73235608 | None:intergenic | 45.0% | |
CCATAACTGAAAAGCCTCAC+CGG | + | chr8.1:73234070-73234089 | MS.gene019711:intron | 45.0% | |
GAAGCTCTTACTACGTTCCA+TGG | - | chr8.1:73233306-73233325 | None:intergenic | 45.0% | |
GATGGTTCCAAACCAATAGC+AGG | + | chr8.1:73236454-73236473 | MS.gene019711:CDS | 45.0% | |
GCACAAACTCACTTACCGAA+TGG | + | chr8.1:73235769-73235788 | MS.gene019711:CDS | 45.0% | |
GTGGGTTCCTTTAGTAGCAT+AGG | + | chr8.1:73234576-73234595 | MS.gene019711:intron | 45.0% | |
TAGGATCATCCGTAGTCTTC+TGG | + | chr8.1:73234595-73234614 | MS.gene019711:intron | 45.0% | |
TCTCTATCTGCAGGATGCAT+CGG | + | chr8.1:73236432-73236451 | MS.gene019711:intron | 45.0% | |
TGCTTCTACCTAAGGACTAG+AGG | - | chr8.1:73236133-73236152 | None:intergenic | 45.0% | |
TTACTCCAAGACACACCTGA+AGG | - | chr8.1:73235251-73235270 | None:intergenic | 45.0% | |
TTCAACCTTCAGGTGTGTCT+TGG | + | chr8.1:73235243-73235262 | MS.gene019711:intron | 45.0% | |
TTCATCAAAAGTCATGGCGG+AGG | - | chr8.1:73233279-73233298 | None:intergenic | 45.0% | |
TTCGGTAAGTGAGTTTGTGC+TGG | - | chr8.1:73235769-73235788 | None:intergenic | 45.0% | |
TTGGAAACTGGCAAGTTCGT+TGG | + | chr8.1:73233924-73233943 | MS.gene019711:intron | 45.0% | |
! | ATAAGCCATACGGGATTAGC+AGG | + | chr8.1:73234210-73234229 | MS.gene019711:intron | 45.0% |
! | ATATTGGTGACTAGTTGGGG+TGG | + | chr8.1:73234557-73234576 | MS.gene019711:intron | 45.0% |
! | GCAGTGAATATTTTACGGGC+TGG | + | chr8.1:73236192-73236211 | MS.gene019711:intron | 45.0% |
! | GGTGTTTTCCTCTAGTCCTT+AGG | + | chr8.1:73236122-73236141 | MS.gene019711:intron | 45.0% |
! | TAAGTGAGTTTGTGCTGGTG+AGG | - | chr8.1:73235764-73235783 | None:intergenic | 45.0% |
! | TATTGGTGACTAGTTGGGGT+GGG | + | chr8.1:73234558-73234577 | MS.gene019711:intron | 45.0% |
! | TTTGCGTCGATCTGTATGTG+TGG | - | chr8.1:73235194-73235213 | None:intergenic | 45.0% |
!! | CCAGTATCGATATGTAGTGG+CGG | - | chr8.1:73235093-73235112 | None:intergenic | 45.0% |
AGGCCTTGGCAGCAAACTTT+GGG | - | chr8.1:73235575-73235594 | None:intergenic | 50.0% | |
CAGAATAAAGTTGAGGCCGC+AGG | - | chr8.1:73234378-73234397 | None:intergenic | 50.0% | |
CCAAACCAATAGCAGGGTTC+AGG | + | chr8.1:73236461-73236480 | MS.gene019711:CDS | 50.0% | |
CCGCCACTACATATCGATAC+TGG | + | chr8.1:73235090-73235109 | MS.gene019711:intron | 50.0% | |
GGCTTCCCCAAAGTAAGTTC+AGG | + | chr8.1:73235445-73235464 | MS.gene019711:intron | 50.0% | |
TACATTGAAAGGGACTCCGC+AGG | + | chr8.1:73235424-73235443 | MS.gene019711:CDS | 50.0% | |
TAGGGGTTTGGGAAGACTCA+CGG | - | chr8.1:73236507-73236526 | None:intergenic | 50.0% | |
TATCTGCAGGATGCATCGGA+TGG | + | chr8.1:73236436-73236455 | MS.gene019711:intron | 50.0% | |
! | ACTTACTTTGGGGAAGCCTG+CGG | - | chr8.1:73235443-73235462 | None:intergenic | 50.0% |
! | CACAAGTTGGCCATCAAACG+TGG | - | chr8.1:73235884-73235903 | None:intergenic | 50.0% |
! | CCGGTGAGGCTTTTCAGTTA+TGG | - | chr8.1:73234073-73234092 | None:intergenic | 50.0% |
! | CCTGAACCCTGCTATTGGTT+TGG | - | chr8.1:73236464-73236483 | None:intergenic | 50.0% |
!! | GAACCCAAAGTTTGCTGCCA+AGG | + | chr8.1:73235569-73235588 | MS.gene019711:CDS | 50.0% |
ACTGCATGCAACGGCTGCAT+CGG | + | chr8.1:73233701-73233720 | MS.gene019711:intron | 55.0% | |
AGCACACTTCTGCTGCGAGT+AGG | - | chr8.1:73236526-73236545 | None:intergenic | 55.0% | |
CACACTTCTGCTGCGAGTAG+GGG | - | chr8.1:73236524-73236543 | None:intergenic | 55.0% | |
CCTTCTCGAGCAGCACACAT+TGG | + | chr8.1:73234802-73234821 | MS.gene019711:CDS | 55.0% | |
CGCAACCTGCTAATCCCGTA+TGG | - | chr8.1:73234218-73234237 | None:intergenic | 55.0% | |
GAGGCCTTGGCAGCAAACTT+TGG | - | chr8.1:73235576-73235595 | None:intergenic | 55.0% | |
GCACACTTCTGCTGCGAGTA+GGG | - | chr8.1:73236525-73236544 | None:intergenic | 55.0% | |
TCTGCTGCGAGTAGGGGTTT+GGG | - | chr8.1:73236518-73236537 | None:intergenic | 55.0% | |
TTCTGCTGCGAGTAGGGGTT+TGG | - | chr8.1:73236519-73236538 | None:intergenic | 55.0% | |
! | AACCGGACTGGAGGTTGAAC+CGG | - | chr8.1:73234092-73234111 | None:intergenic | 55.0% |
! | CCAATGTGTGCTGCTCGAGA+AGG | - | chr8.1:73234805-73234824 | None:intergenic | 55.0% |
!! | AAGTTTGCTGCCAAGGCCTC+TGG | + | chr8.1:73235576-73235595 | MS.gene019711:CDS | 55.0% |
AAACATTGGGCGGCACACGC+AGG | + | chr8.1:73235818-73235837 | MS.gene019711:CDS | 60.0% | |
AACATTGGGCGGCACACGCA+GGG | + | chr8.1:73235819-73235838 | MS.gene019711:CDS | 60.0% | |
CACTGTGACCGCATAACGCG+AGG | - | chr8.1:73233655-73233674 | None:intergenic | 60.0% | |
CTGCATGCAACGGCTGCATC+GGG | + | chr8.1:73233702-73233721 | MS.gene019711:intron | 60.0% | |
GACTGGAGGTTGAACCGGTG+AGG | - | chr8.1:73234087-73234106 | None:intergenic | 60.0% | |
GAGCTTCGTCAACGCCTTGC+AGG | + | chr8.1:73233319-73233338 | MS.gene019711:CDS | 60.0% | |
GTGCCGCCCAATGTTTGCAC+AGG | - | chr8.1:73235814-73235833 | None:intergenic | 60.0% | |
TGTGACCGCATAACGCGAGG+CGG | - | chr8.1:73233652-73233671 | None:intergenic | 60.0% | |
TTGGACCGCCTCGCGTTATG+CGG | + | chr8.1:73233644-73233663 | MS.gene019711:intron | 60.0% | |
!! | AGTGGCGGTGCCACGTTTGA+TGG | + | chr8.1:73235871-73235890 | MS.gene019711:intron | 60.0% |
!! | CACCGGTTCAACCTCCAGTC+CGG | + | chr8.1:73234087-73234106 | MS.gene019711:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 73233239 | 73236603 | 73233239 | ID=MS.gene019711 |
chr8.1 | mRNA | 73233239 | 73236603 | 73233239 | ID=MS.gene019711.t1;Parent=MS.gene019711 |
chr8.1 | exon | 73233239 | 73233340 | 73233239 | ID=MS.gene019711.t1.exon1;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73233239 | 73233340 | 73233239 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
chr8.1 | exon | 73234364 | 73234446 | 73234364 | ID=MS.gene019711.t1.exon2;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73234364 | 73234446 | 73234364 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
chr8.1 | exon | 73234715 | 73234865 | 73234715 | ID=MS.gene019711.t1.exon3;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73234715 | 73234865 | 73234715 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
chr8.1 | exon | 73234948 | 73235047 | 73234948 | ID=MS.gene019711.t1.exon4;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73234948 | 73235047 | 73234948 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
chr8.1 | exon | 73235162 | 73235254 | 73235162 | ID=MS.gene019711.t1.exon5;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73235162 | 73235254 | 73235162 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
chr8.1 | exon | 73235372 | 73235456 | 73235372 | ID=MS.gene019711.t1.exon6;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73235372 | 73235456 | 73235372 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
chr8.1 | exon | 73235563 | 73235615 | 73235563 | ID=MS.gene019711.t1.exon7;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73235563 | 73235615 | 73235563 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
chr8.1 | exon | 73235734 | 73235840 | 73235734 | ID=MS.gene019711.t1.exon8;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73235734 | 73235840 | 73235734 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
chr8.1 | exon | 73236445 | 73236603 | 73236445 | ID=MS.gene019711.t1.exon9;Parent=MS.gene019711.t1 |
chr8.1 | CDS | 73236445 | 73236603 | 73236445 | ID=cds.MS.gene019711.t1;Parent=MS.gene019711.t1 |
Gene Sequence |
Protein sequence |