Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31641.t1 | XP_013465691.1 | 99.4 | 323 | 1 | 1 | 1 | 322 | 20 | 342 | 4.00E-156 | 560.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31641.t1 | Q6NMC6 | 58.7 | 327 | 124 | 4 | 1 | 322 | 1 | 321 | 7.5e-95 | 348.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31641.t1 | A0A072VD45 | 99.4 | 323 | 1 | 1 | 1 | 322 | 20 | 342 | 2.9e-156 | 560.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06693 | MS.gene31641 | PPI |
| MS.gene31641 | MS.gene013576 | PPI |
| MS.gene92121 | MS.gene31641 | PPI |
| MS.gene059164 | MS.gene31641 | PPI |
| MS.gene31641 | MS.gene019711 | PPI |
| MS.gene31641 | MS.gene024488 | PPI |
| MS.gene31641 | MS.gene057119 | PPI |
| MS.gene31641 | MS.gene79701 | PPI |
| MS.gene31641 | MS.gene22839 | PPI |
| MS.gene31641 | MS.gene050599 | PPI |
| MS.gene31641 | MS.gene54480 | PPI |
| MS.gene31641 | MS.gene021449 | PPI |
| MS.gene98197 | MS.gene31641 | PPI |
| MS.gene31641 | MS.gene06902 | PPI |
| MS.gene31641 | MS.gene059163 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31641.t1 | MTR_1g007880 | 99.071 | 323 | 2 | 1 | 1 | 322 | 1 | 323 | 0.0 | 659 |
| MS.gene31641.t1 | MTR_1g007880 | 99.071 | 323 | 2 | 1 | 1 | 322 | 20 | 342 | 0.0 | 657 |
| MS.gene31641.t1 | MTR_3g091760 | 74.540 | 326 | 79 | 2 | 1 | 322 | 1 | 326 | 4.43e-178 | 495 |
| MS.gene31641.t1 | MTR_3g091760 | 75.566 | 221 | 50 | 2 | 1 | 217 | 1 | 221 | 1.68e-121 | 349 |
| MS.gene31641.t1 | MTR_8g028410 | 44.571 | 175 | 88 | 2 | 13 | 186 | 15 | 181 | 6.38e-43 | 147 |
| MS.gene31641.t1 | MTR_8g028410 | 44.571 | 175 | 88 | 2 | 13 | 186 | 15 | 181 | 2.53e-42 | 149 |
| MS.gene31641.t1 | MTR_8g028410 | 44.571 | 175 | 88 | 2 | 13 | 186 | 15 | 181 | 2.86e-42 | 146 |
| MS.gene31641.t1 | MTR_8g028410 | 44.571 | 175 | 88 | 2 | 13 | 186 | 15 | 181 | 1.00e-41 | 146 |
| MS.gene31641.t1 | MTR_7g116710 | 50.000 | 134 | 65 | 1 | 18 | 149 | 2 | 135 | 3.94e-38 | 137 |
| MS.gene31641.t1 | MTR_6g087680 | 28.926 | 121 | 85 | 1 | 21 | 141 | 19 | 138 | 1.50e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31641.t1 | AT5G24310 | 62.997 | 327 | 110 | 5 | 1 | 322 | 1 | 321 | 4.96e-141 | 401 |
| MS.gene31641.t1 | AT3G49290 | 63.522 | 318 | 106 | 5 | 8 | 322 | 2 | 312 | 2.56e-140 | 399 |
| MS.gene31641.t1 | AT3G49290 | 63.522 | 318 | 106 | 5 | 8 | 322 | 2 | 312 | 2.56e-140 | 399 |
| MS.gene31641.t1 | AT5G24310 | 63.438 | 320 | 106 | 5 | 8 | 322 | 2 | 315 | 6.78e-139 | 396 |
| MS.gene31641.t1 | AT5G24310 | 60.550 | 327 | 104 | 6 | 1 | 322 | 1 | 307 | 8.42e-130 | 372 |
| MS.gene31641.t1 | AT5G24310 | 68.966 | 203 | 62 | 1 | 8 | 209 | 2 | 204 | 7.23e-99 | 291 |
| MS.gene31641.t1 | AT5G42030 | 38.411 | 302 | 145 | 5 | 13 | 310 | 14 | 278 | 4.53e-62 | 199 |
| MS.gene31641.t1 | AT5G42030 | 44.444 | 234 | 105 | 3 | 13 | 242 | 14 | 226 | 3.36e-58 | 190 |
| MS.gene31641.t1 | AT5G42030 | 46.591 | 176 | 82 | 1 | 13 | 188 | 14 | 177 | 1.85e-47 | 159 |
| MS.gene31641.t1 | AT2G46225 | 49.618 | 131 | 66 | 0 | 13 | 143 | 12 | 142 | 1.18e-38 | 138 |
| MS.gene31641.t1 | AT2G46225 | 49.618 | 131 | 66 | 0 | 13 | 143 | 12 | 142 | 1.57e-38 | 138 |
| MS.gene31641.t1 | AT2G46225 | 49.618 | 131 | 66 | 0 | 13 | 143 | 12 | 142 | 2.29e-38 | 139 |
| MS.gene31641.t1 | AT5G42030 | 33.858 | 254 | 127 | 5 | 61 | 310 | 15 | 231 | 3.30e-38 | 135 |
Find 52 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACAAGTCACTTACTTTAT+AGG | 0.184341 | 1.1:-11679568 | None:intergenic |
| CATGAAAACCTCATCATAAT+TGG | 0.225739 | 1.1:-11679183 | None:intergenic |
| ATAAATACGGTGGATCATTT+AGG | 0.254083 | 1.1:+11679537 | MS.gene31641:CDS |
| ATATAACGCTTATGATGTTT+TGG | 0.277327 | 1.1:-11680033 | None:intergenic |
| ACCCTTACTCTTGCATTTGA+AGG | 0.367421 | 1.1:-11680855 | None:intergenic |
| AAGATGATTGGCATCACTTC+AGG | 0.368367 | 1.1:+11680277 | MS.gene31641:CDS |
| AGAAGACGTTTACTCTTACT+AGG | 0.379538 | 1.1:-11681079 | None:intergenic |
| GTGGATCTGTTGCTTGAGTT+TGG | 0.380438 | 1.1:-11680825 | None:intergenic |
| GTCCTTCAAATGCAAGAGTA+AGG | 0.381834 | 1.1:+11680853 | MS.gene31641:CDS |
| CGTATTTATAAGAGCTTTGA+CGG | 0.384601 | 1.1:-11679523 | None:intergenic |
| GTAGTTGATCGACCAGTCTT+TGG | 0.395956 | 1.1:-11680801 | None:intergenic |
| TCAACAAAATCAAAATATAT+AGG | 0.400778 | 1.1:+11680237 | MS.gene31641:CDS |
| TTCTTAAGTCCTTACTTAGC+AGG | 0.421217 | 1.1:+11681098 | MS.gene31641:CDS |
| CAGATTGGTTGAAACATTGA+AGG | 0.425974 | 1.1:+11679494 | MS.gene31641:intron |
| GAAGACGTTTACTCTTACTA+GGG | 0.455154 | 1.1:-11681078 | None:intergenic |
| CGTCAAAGCTCTTATAAATA+CGG | 0.463693 | 1.1:+11679524 | MS.gene31641:CDS |
| TGCATTTGAAGGACTTGTTG+TGG | 0.465269 | 1.1:-11680844 | None:intergenic |
| GCCAATCATCTTCATCATCT+AGG | 0.468564 | 1.1:-11680266 | None:intergenic |
| ATTGATCCGGTACGCGAAAG+TGG | 0.473069 | 1.1:-11680759 | None:intergenic |
| ACGTTTGTCATGTATCGAAC+AGG | 0.476007 | 1.1:+11679626 | MS.gene31641:CDS |
| AAGTGACTTGTTAGATGAGA+AGG | 0.479405 | 1.1:+11679578 | MS.gene31641:CDS |
| AGATTTCCACTTTCGCGTAC+CGG | 0.484374 | 1.1:+11680753 | MS.gene31641:CDS |
| AGACTTGCGCCTGCTAAGTA+AGG | 0.495332 | 1.1:-11681107 | None:intergenic |
| TTGGAAGCCATTCGAGGTAG+AGG | 0.498778 | 1.1:-11679164 | None:intergenic |
| ACTCTCTGAGGTTGTAAAGA+AGG | 0.515519 | 1.1:-11680562 | None:intergenic |
| GCTGATTTGCGCGGTTCTGA+AGG | 0.522861 | 1.1:-11681004 | None:intergenic |
| TGTTGAGTTGGTACCATGCA+AGG | 0.528628 | 1.1:-11680220 | None:intergenic |
| TGACACGTTATACACGTACT+TGG | 0.534570 | 1.1:+11681138 | MS.gene31641:CDS |
| ACCTAGATGATGAAGATGAT+TGG | 0.546777 | 1.1:+11680265 | MS.gene31641:CDS |
| AGATCTACTTGACATTGATC+CGG | 0.547800 | 1.1:-11680772 | None:intergenic |
| TAGCAGGCGCAAGTCTAAGA+AGG | 0.559475 | 1.1:+11681114 | MS.gene31641:CDS |
| TAGAGAATAAAGACATGTCA+AGG | 0.561234 | 1.1:+11679961 | MS.gene31641:intron |
| GTTTACTCTTACTAGGGTGT+TGG | 0.563511 | 1.1:-11681072 | None:intergenic |
| TCTTTACAACCTCAGAGAGT+AGG | 0.567555 | 1.1:+11680565 | MS.gene31641:CDS |
| AGATCTACAACACCAAAGAC+TGG | 0.588230 | 1.1:+11680789 | MS.gene31641:CDS |
| TAGACTATCATCAAAGAGCA+AGG | 0.589354 | 1.1:-11679213 | None:intergenic |
| TCATAATTGGAAGCCATTCG+AGG | 0.591946 | 1.1:-11679170 | None:intergenic |
| GCTCTTTGATGATAGTCTAA+CGG | 0.592533 | 1.1:+11679217 | MS.gene31641:CDS |
| GATTGGCATCACTTCAGGAA+TGG | 0.593721 | 1.1:+11680282 | MS.gene31641:CDS |
| AATGGCTTCCAATTATGATG+AGG | 0.593743 | 1.1:+11679175 | MS.gene31641:CDS |
| TCAGTTGGGGAGACCTTGCA+TGG | 0.593836 | 1.1:+11680207 | MS.gene31641:intron |
| TGAGGTTGTAAAGAAGGTGA+TGG | 0.601446 | 1.1:-11680556 | None:intergenic |
| AACACAGCCTCTACCTCGAA+TGG | 0.604351 | 1.1:+11679157 | MS.gene31641:CDS |
| TCCTTCAAATGCAAGAGTAA+GGG | 0.605270 | 1.1:+11680854 | MS.gene31641:CDS |
| TGTTTGTACCTCGAGGTAGA+CGG | 0.607047 | 1.1:-11680435 | None:intergenic |
| CGCATTGAAGCTGATTTGCG+CGG | 0.621830 | 1.1:-11681013 | None:intergenic |
| ATGTATGTGCAATAGAGAAG+CGG | 0.622807 | 1.1:+11680715 | MS.gene31641:intron |
| CAAAGCTCTTATAAATACGG+TGG | 0.622841 | 1.1:+11679527 | MS.gene31641:CDS |
| AAACGCCACCGTCTACCTCG+AGG | 0.672178 | 1.1:+11680427 | MS.gene31641:CDS |
| CGCGAAAGTGGAAATCTGTG+TGG | 0.691292 | 1.1:-11680747 | None:intergenic |
| AATCATCTTCATCATCTAGG+TGG | 0.697533 | 1.1:-11680263 | None:intergenic |
| TTGTACCTCGAGGTAGACGG+TGG | 0.703129 | 1.1:-11680432 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTCTTATAAATTTAA+GGG | - | chr1.1:11679266-11679285 | None:intergenic | 10.0% |
| !! | TAAAAACTCTTATAAATTTA+AGG | - | chr1.1:11679267-11679286 | None:intergenic | 10.0% |
| !! | GCTTATAATTTAATTGAAAA+CGG | - | chr1.1:11679768-11679787 | None:intergenic | 15.0% |
| !! | TCAACAAAATCAAAATATAT+AGG | + | chr1.1:11680237-11680256 | MS.gene31641:CDS | 15.0% |
| !!! | AACATAATTTTTCCATAATA+TGG | + | chr1.1:11679933-11679952 | MS.gene31641:intron | 15.0% |
| !!! | ACTCTATTTTGAAATTTTTT+AGG | + | chr1.1:11680090-11680109 | MS.gene31641:intron | 15.0% |
| !! | AAAATTTCAAAATAGAGTTG+AGG | - | chr1.1:11680088-11680107 | None:intergenic | 20.0% |
| !! | AAGTAATGTGAAAAACATTA+TGG | + | chr1.1:11679868-11679887 | MS.gene31641:intron | 20.0% |
| !!! | AATTAACTCACATTTGTTTT+TGG | - | chr1.1:11679405-11679424 | None:intergenic | 20.0% |
| !!! | ATATTTTGATTTTGTTGAGT+TGG | - | chr1.1:11680235-11680254 | None:intergenic | 20.0% |
| !!! | ATTGTATTTTATTTGCAGAT+TGG | + | chr1.1:11679479-11679498 | MS.gene31641:intron | 20.0% |
| !!! | TTTTTTTCATCTACATTTCT+AGG | + | chr1.1:11679309-11679328 | MS.gene31641:intron | 20.0% |
| ! | AAAAGCTAATGGAAATAAAC+TGG | + | chr1.1:11679808-11679827 | MS.gene31641:intron | 25.0% |
| ! | AACTCTTATAAATTTAAGGG+AGG | - | chr1.1:11679263-11679282 | None:intergenic | 25.0% |
| ! | AAGATTGTATGCTATAAAAG+TGG | - | chr1.1:11680341-11680360 | None:intergenic | 25.0% |
| ! | AATCATGTTGCTATAGTAAA+GGG | + | chr1.1:11680527-11680546 | MS.gene31641:intron | 25.0% |
| ! | AATGTATTTATAAACTTGCC+TGG | - | chr1.1:11680063-11680082 | None:intergenic | 25.0% |
| ! | ACATTAGAATGTGAATATTG+TGG | + | chr1.1:11680938-11680957 | MS.gene31641:intron | 25.0% |
| ! | TAACAAGTCACTTACTTTAT+AGG | - | chr1.1:11679571-11679590 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATTGAAACAG+AGG | - | chr1.1:11679661-11679680 | None:intergenic | 25.0% |
| ! | TGTGCAATTTAATTGAGAAT+TGG | - | chr1.1:11680484-11680503 | None:intergenic | 25.0% |
| ! | TTCTCTAATGTACCATATTA+TGG | - | chr1.1:11679948-11679967 | None:intergenic | 25.0% |
| !! | ATATAACGCTTATGATGTTT+TGG | - | chr1.1:11680036-11680055 | None:intergenic | 25.0% |
| !! | TCATTTTCACAAATTCAGTT+GGG | + | chr1.1:11680193-11680212 | MS.gene31641:intron | 25.0% |
| !!! | AAACGTAACAGTTTTTCAAA+TGG | - | chr1.1:11679901-11679920 | None:intergenic | 25.0% |
| !!! | GTTTATTTCCATTAGCTTTT+CGG | - | chr1.1:11679808-11679827 | None:intergenic | 25.0% |
| !!! | TATAGTACCCAAATCTTTTT+TGG | - | chr1.1:11680617-11680636 | None:intergenic | 25.0% |
| !!! | TTTATTTCCATTAGCTTTTC+GGG | - | chr1.1:11679807-11679826 | None:intergenic | 25.0% |
| AACATGGCCAAAAAAGATTT+GGG | + | chr1.1:11680607-11680626 | MS.gene31641:CDS | 30.0% | |
| AATTTAAGGGAGGAAATTAC+TGG | - | chr1.1:11679253-11679272 | None:intergenic | 30.0% | |
| ATAAACTGGAAAACAGCTTA+TGG | + | chr1.1:11679822-11679841 | MS.gene31641:intron | 30.0% | |
| ATAAATACGGTGGATCATTT+AGG | + | chr1.1:11679537-11679556 | MS.gene31641:CDS | 30.0% | |
| CAATCATGTTGCTATAGTAA+AGG | + | chr1.1:11680526-11680545 | MS.gene31641:intron | 30.0% | |
| CATGAAAACCTCATCATAAT+TGG | - | chr1.1:11679186-11679205 | None:intergenic | 30.0% | |
| CGATTATCACATAGTACTTA+TGG | + | chr1.1:11679702-11679721 | MS.gene31641:intron | 30.0% | |
| CGTCAAAGCTCTTATAAATA+CGG | + | chr1.1:11679524-11679543 | MS.gene31641:CDS | 30.0% | |
| TAGAGAATAAAGACATGTCA+AGG | + | chr1.1:11679961-11679980 | MS.gene31641:intron | 30.0% | |
| ! | AAAGACATGTCAAGGTTTTA+TGG | + | chr1.1:11679969-11679988 | MS.gene31641:CDS | 30.0% |
| ! | CATTTTCACAAATTCAGTTG+GGG | + | chr1.1:11680194-11680213 | MS.gene31641:intron | 30.0% |
| ! | CGTATTTATAAGAGCTTTGA+CGG | - | chr1.1:11679526-11679545 | None:intergenic | 30.0% |
| ! | CTCATTTTCACAAATTCAGT+TGG | + | chr1.1:11680192-11680211 | MS.gene31641:intron | 30.0% |
| ! | TTTTTCATTTTCACCCAACA+TGG | + | chr1.1:11680591-11680610 | MS.gene31641:CDS | 30.0% |
| !!! | AAATCTTTTTTGGCCATGTT+GGG | - | chr1.1:11680607-11680626 | None:intergenic | 30.0% |
| !!! | CATTTGTTTTTGGTCATCAT+TGG | - | chr1.1:11679395-11679414 | None:intergenic | 30.0% |
| AATCATCTTCATCATCTAGG+TGG | - | chr1.1:11680266-11680285 | None:intergenic | 35.0% | |
| AATGGCTTCCAATTATGATG+AGG | + | chr1.1:11679175-11679194 | MS.gene31641:CDS | 35.0% | |
| ACCTAGATGATGAAGATGAT+TGG | + | chr1.1:11680265-11680284 | MS.gene31641:CDS | 35.0% | |
| AGAAGACGTTTACTCTTACT+AGG | - | chr1.1:11681082-11681101 | None:intergenic | 35.0% | |
| AGATCTACTTGACATTGATC+CGG | - | chr1.1:11680775-11680794 | None:intergenic | 35.0% | |
| AGCTTATGGACTCAACAATA+AGG | + | chr1.1:11679836-11679855 | MS.gene31641:intron | 35.0% | |
| ATGTATGTGCAATAGAGAAG+CGG | + | chr1.1:11680715-11680734 | MS.gene31641:intron | 35.0% | |
| CAAAGCTCTTATAAATACGG+TGG | + | chr1.1:11679527-11679546 | MS.gene31641:CDS | 35.0% | |
| CAACATGGCCAAAAAAGATT+TGG | + | chr1.1:11680606-11680625 | MS.gene31641:CDS | 35.0% | |
| GAAGACGTTTACTCTTACTA+GGG | - | chr1.1:11681081-11681100 | None:intergenic | 35.0% | |
| TAGACTATCATCAAAGAGCA+AGG | - | chr1.1:11679216-11679235 | None:intergenic | 35.0% | |
| TCCTTCAAATGCAAGAGTAA+GGG | + | chr1.1:11680854-11680873 | MS.gene31641:CDS | 35.0% | |
| TTCTTAAGTCCTTACTTAGC+AGG | + | chr1.1:11681098-11681117 | MS.gene31641:CDS | 35.0% | |
| ! | CAGATTGGTTGAAACATTGA+AGG | + | chr1.1:11679494-11679513 | MS.gene31641:intron | 35.0% |
| ! | CATAAGCGTTATATTTTGCC+AGG | + | chr1.1:11680042-11680061 | MS.gene31641:CDS | 35.0% |
| ! | GAGAAGGTAACTGAAGTTTT+TGG | + | chr1.1:11679594-11679613 | MS.gene31641:CDS | 35.0% |
| ! | GCTCTTTGATGATAGTCTAA+CGG | + | chr1.1:11679217-11679236 | MS.gene31641:CDS | 35.0% |
| !! | AAGGTTTTATGGATCATGAG+GGG | + | chr1.1:11679980-11679999 | MS.gene31641:CDS | 35.0% |
| !! | AAGTGACTTGTTAGATGAGA+AGG | + | chr1.1:11679578-11679597 | MS.gene31641:CDS | 35.0% |
| !! | CAAGGTTTTATGGATCATGA+GGG | + | chr1.1:11679979-11679998 | MS.gene31641:CDS | 35.0% |
| !! | TCAAGGTTTTATGGATCATG+AGG | + | chr1.1:11679978-11679997 | MS.gene31641:CDS | 35.0% |
| !!! | CAAATCTTTTTTGGCCATGT+TGG | - | chr1.1:11680608-11680627 | None:intergenic | 35.0% |
| AAGATGATTGGCATCACTTC+AGG | + | chr1.1:11680277-11680296 | MS.gene31641:CDS | 40.0% | |
| AAGCTATCCCGAAAAGCTAA+TGG | + | chr1.1:11679797-11679816 | MS.gene31641:intron | 40.0% | |
| AATGCAAGAGTAAGGGTAAG+TGG | + | chr1.1:11680861-11680880 | MS.gene31641:intron | 40.0% | |
| ACCCTTACTCTTGCATTTGA+AGG | - | chr1.1:11680858-11680877 | None:intergenic | 40.0% | |
| ACGTTTGTCATGTATCGAAC+AGG | + | chr1.1:11679626-11679645 | MS.gene31641:CDS | 40.0% | |
| AGATCTACAACACCAAAGAC+TGG | + | chr1.1:11680789-11680808 | MS.gene31641:CDS | 40.0% | |
| GCCAATCATCTTCATCATCT+AGG | - | chr1.1:11680269-11680288 | None:intergenic | 40.0% | |
| GTCCTTCAAATGCAAGAGTA+AGG | + | chr1.1:11680853-11680872 | MS.gene31641:CDS | 40.0% | |
| GTTTACTCTTACTAGGGTGT+TGG | - | chr1.1:11681075-11681094 | None:intergenic | 40.0% | |
| TCATAATTGGAAGCCATTCG+AGG | - | chr1.1:11679173-11679192 | None:intergenic | 40.0% | |
| TCTGAAGGATACTGCAAGAA+AGG | - | chr1.1:11680992-11681011 | None:intergenic | 40.0% | |
| TCTTTACAACCTCAGAGAGT+AGG | + | chr1.1:11680565-11680584 | MS.gene31641:CDS | 40.0% | |
| TGACACGTTATACACGTACT+TGG | + | chr1.1:11681138-11681157 | MS.gene31641:CDS | 40.0% | |
| TGAGGTTGTAAAGAAGGTGA+TGG | - | chr1.1:11680559-11680578 | None:intergenic | 40.0% | |
| !! | ACTCTCTGAGGTTGTAAAGA+AGG | - | chr1.1:11680565-11680584 | None:intergenic | 40.0% |
| !! | CTGATTTTGTTTGTACCTCG+AGG | - | chr1.1:11680445-11680464 | None:intergenic | 40.0% |
| !! | TGCATTTGAAGGACTTGTTG+TGG | - | chr1.1:11680847-11680866 | None:intergenic | 40.0% |
| AGATTTCCACTTTCGCGTAC+CGG | + | chr1.1:11680753-11680772 | MS.gene31641:CDS | 45.0% | |
| GAAAAAGCTCCTACTCTCTG+AGG | - | chr1.1:11680577-11680596 | None:intergenic | 45.0% | |
| GATTGGCATCACTTCAGGAA+TGG | + | chr1.1:11680282-11680301 | MS.gene31641:CDS | 45.0% | |
| GTAGTTGATCGACCAGTCTT+TGG | - | chr1.1:11680804-11680823 | None:intergenic | 45.0% | |
| TGTTTGTACCTCGAGGTAGA+CGG | - | chr1.1:11680438-11680457 | None:intergenic | 45.0% | |
| ! | GTGGATCTGTTGCTTGAGTT+TGG | - | chr1.1:11680828-11680847 | None:intergenic | 45.0% |
| !! | TGTTGAGTTGGTACCATGCA+AGG | - | chr1.1:11680223-11680242 | None:intergenic | 45.0% |
| !! | AATATTAATGTATAATATAA+AGG | - | chr1.1:11680134-11680153 | None:intergenic | 5.0% |
| !! | ATATTAATGTATAATATAAA+GGG | - | chr1.1:11680133-11680152 | None:intergenic | 5.0% |
| AACACAGCCTCTACCTCGAA+TGG | + | chr1.1:11679157-11679176 | MS.gene31641:CDS | 50.0% | |
| AGACTTGCGCCTGCTAAGTA+AGG | - | chr1.1:11681110-11681129 | None:intergenic | 50.0% | |
| ATTGATCCGGTACGCGAAAG+TGG | - | chr1.1:11680762-11680781 | None:intergenic | 50.0% | |
| CGCGAAAGTGGAAATCTGTG+TGG | - | chr1.1:11680750-11680769 | None:intergenic | 50.0% | |
| TAGCAGGCGCAAGTCTAAGA+AGG | + | chr1.1:11681114-11681133 | MS.gene31641:CDS | 50.0% | |
| TTGGAAGCCATTCGAGGTAG+AGG | - | chr1.1:11679167-11679186 | None:intergenic | 50.0% | |
| !! | CGCATTGAAGCTGATTTGCG+CGG | - | chr1.1:11681016-11681035 | None:intergenic | 50.0% |
| TCAGTTGGGGAGACCTTGCA+TGG | + | chr1.1:11680207-11680226 | MS.gene31641:intron | 55.0% | |
| TTGTACCTCGAGGTAGACGG+TGG | - | chr1.1:11680435-11680454 | None:intergenic | 55.0% | |
| !! | GCTGATTTGCGCGGTTCTGA+AGG | - | chr1.1:11681007-11681026 | None:intergenic | 55.0% |
| AAACGCCACCGTCTACCTCG+AGG | + | chr1.1:11680427-11680446 | MS.gene31641:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 11679143 | 11681171 | 11679143 | ID=MS.gene31641 |
| chr1.1 | mRNA | 11679143 | 11681171 | 11679143 | ID=MS.gene31641.t1;Parent=MS.gene31641 |
| chr1.1 | exon | 11679143 | 11679238 | 11679143 | ID=MS.gene31641.t1.exon1;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11679143 | 11679238 | 11679143 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| chr1.1 | exon | 11679331 | 11679413 | 11679331 | ID=MS.gene31641.t1.exon2;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11679331 | 11679413 | 11679331 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| chr1.1 | exon | 11679497 | 11679647 | 11679497 | ID=MS.gene31641.t1.exon3;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11679497 | 11679647 | 11679497 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| chr1.1 | exon | 11679964 | 11680063 | 11679964 | ID=MS.gene31641.t1.exon4;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11679964 | 11680063 | 11679964 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| chr1.1 | exon | 11680211 | 11680303 | 11680211 | ID=MS.gene31641.t1.exon5;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11680211 | 11680303 | 11680211 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| chr1.1 | exon | 11680406 | 11680448 | 11680406 | ID=MS.gene31641.t1.exon6;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11680406 | 11680448 | 11680406 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| chr1.1 | exon | 11680543 | 11680628 | 11680543 | ID=MS.gene31641.t1.exon7;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11680543 | 11680628 | 11680543 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| chr1.1 | exon | 11680730 | 11680875 | 11680730 | ID=MS.gene31641.t1.exon8;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11680730 | 11680875 | 11680730 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| chr1.1 | exon | 11681001 | 11681171 | 11681001 | ID=MS.gene31641.t1.exon9;Parent=MS.gene31641.t1 |
| chr1.1 | CDS | 11681001 | 11681171 | 11681001 | ID=cds.MS.gene31641.t1;Parent=MS.gene31641.t1 |
| Gene Sequence |
| Protein sequence |