Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06902.t1 | XP_004502669.1 | 92 | 327 | 24 | 2 | 1 | 326 | 1 | 326 | 3.00E-143 | 518.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06902.t1 | Q9M3A3 | 63.4 | 325 | 96 | 4 | 11 | 326 | 2 | 312 | 9.3e-101 | 368.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06902.t1 | A0A1S3E7W0 | 92.0 | 327 | 24 | 2 | 1 | 326 | 1 | 326 | 2.2e-143 | 518.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79701 | MS.gene06902 | PPI |
| MS.gene54480 | MS.gene06902 | PPI |
| MS.gene024488 | MS.gene06902 | PPI |
| MS.gene013576 | MS.gene06902 | PPI |
| MS.gene059163 | MS.gene06902 | PPI |
| MS.gene98197 | MS.gene06902 | PPI |
| MS.gene021449 | MS.gene06902 | PPI |
| MS.gene057119 | MS.gene06902 | PPI |
| MS.gene06693 | MS.gene06902 | PPI |
| MS.gene92121 | MS.gene06902 | PPI |
| MS.gene059164 | MS.gene06902 | PPI |
| MS.gene050599 | MS.gene06902 | PPI |
| MS.gene22839 | MS.gene06902 | PPI |
| MS.gene019711 | MS.gene06902 | PPI |
| MS.gene31641 | MS.gene06902 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06902.t1 | MTR_3g091760 | 98.160 | 326 | 6 | 0 | 1 | 326 | 1 | 326 | 0.0 | 657 |
| MS.gene06902.t1 | MTR_1g007880 | 74.618 | 327 | 78 | 3 | 1 | 326 | 1 | 323 | 2.47e-178 | 496 |
| MS.gene06902.t1 | MTR_1g007880 | 74.618 | 327 | 78 | 3 | 1 | 326 | 20 | 342 | 1.95e-177 | 494 |
| MS.gene06902.t1 | MTR_3g091760 | 97.738 | 221 | 5 | 0 | 1 | 221 | 1 | 221 | 1.55e-161 | 451 |
| MS.gene06902.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 4.60e-42 | 145 |
| MS.gene06902.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 1.84e-41 | 144 |
| MS.gene06902.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 3.36e-41 | 146 |
| MS.gene06902.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 6.96e-41 | 144 |
| MS.gene06902.t1 | MTR_7g116710 | 48.413 | 126 | 65 | 0 | 21 | 146 | 2 | 127 | 1.98e-35 | 130 |
| MS.gene06902.t1 | MTR_6g087680 | 33.058 | 121 | 80 | 1 | 24 | 144 | 19 | 138 | 1.81e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06902.t1 | AT3G49290 | 69.688 | 320 | 84 | 5 | 11 | 326 | 2 | 312 | 1.25e-152 | 431 |
| MS.gene06902.t1 | AT3G49290 | 69.688 | 320 | 84 | 5 | 11 | 326 | 2 | 312 | 1.25e-152 | 431 |
| MS.gene06902.t1 | AT5G24310 | 67.988 | 328 | 93 | 6 | 4 | 326 | 1 | 321 | 4.89e-148 | 419 |
| MS.gene06902.t1 | AT5G24310 | 69.159 | 321 | 87 | 6 | 11 | 326 | 2 | 315 | 8.94e-147 | 416 |
| MS.gene06902.t1 | AT5G24310 | 65.549 | 328 | 87 | 7 | 4 | 326 | 1 | 307 | 1.73e-137 | 392 |
| MS.gene06902.t1 | AT5G24310 | 70.320 | 219 | 61 | 3 | 11 | 226 | 2 | 219 | 3.06e-100 | 295 |
| MS.gene06902.t1 | AT5G42030 | 41.176 | 255 | 121 | 4 | 14 | 261 | 12 | 244 | 5.66e-55 | 181 |
| MS.gene06902.t1 | AT5G42030 | 38.868 | 265 | 129 | 4 | 14 | 274 | 12 | 247 | 3.34e-52 | 175 |
| MS.gene06902.t1 | AT5G42030 | 45.349 | 172 | 82 | 1 | 14 | 185 | 12 | 171 | 1.20e-43 | 149 |
| MS.gene06902.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 1.76e-36 | 133 |
| MS.gene06902.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 2.39e-36 | 133 |
| MS.gene06902.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 3.63e-36 | 133 |
| MS.gene06902.t1 | AT5G42030 | 37.073 | 205 | 100 | 4 | 64 | 261 | 15 | 197 | 6.74e-31 | 117 |
Find 77 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGGTTGTTGAAGTTTC+TGG | 0.188763 | 3.2:+77162844 | MS.gene06902:CDS |
| ACGTAACGCTTGTGATATTT+TGG | 0.201872 | 3.2:-77164174 | None:intergenic |
| CATATAAACCTCATCAAAAT+TGG | 0.228895 | 3.2:-77162356 | None:intergenic |
| CAACAAGTCATTCACTTTAT+AGG | 0.236527 | 3.2:-77162818 | None:intergenic |
| TTGGAAGCTTCTTGAGAAAA+AGG | 0.270340 | 3.2:-77162337 | None:intergenic |
| AGACTTCCGTCTGCTTAATA+AGG | 0.282251 | 3.2:-77165414 | None:intergenic |
| GTAAATACAGTGGACCATTT+AGG | 0.283672 | 3.2:+77162787 | MS.gene06902:CDS |
| TGTATTTACAAGAGCTTTGA+TGG | 0.284393 | 3.2:-77162773 | None:intergenic |
| GTGATTGGTCTGCTTGGTTT+TGG | 0.288333 | 3.2:-77165165 | None:intergenic |
| GTAGTTGATCTACTCATATT+TGG | 0.295638 | 3.2:-77165141 | None:intergenic |
| CTACTCATATTTGGTGTTGT+AGG | 0.312359 | 3.2:-77165132 | None:intergenic |
| GTACAGACCTAAATCTTTCT+TGG | 0.329663 | 3.2:-77164680 | None:intergenic |
| TACCTTGTTGTTGTAGATAT+TGG | 0.335185 | 3.2:-77164503 | None:intergenic |
| ACCATGCCCAAGAAAGATTT+AGG | 0.343069 | 3.2:+77164673 | MS.gene06902:CDS |
| AAGATGAGTGGCCTCACTTT+AGG | 0.348049 | 3.2:+77164355 | MS.gene06902:CDS |
| CGGTTCCCACTTCTGCGTAC+TGG | 0.400723 | 3.2:+77165093 | MS.gene06902:CDS |
| TATAGGTCACAGAACCTAAA+TGG | 0.401928 | 3.2:-77162801 | None:intergenic |
| TTAGAAGGATTTGGTGTGAT+TGG | 0.416608 | 3.2:-77165180 | None:intergenic |
| TTACATGTATTGAAGATAAA+CGG | 0.433228 | 3.2:+77165055 | MS.gene06902:intron |
| GTCTGCTTAATAAGGCCTTC+AGG | 0.434013 | 3.2:-77165406 | None:intergenic |
| ACGTGTATCTTGTATTGAAC+AGG | 0.439316 | 3.2:+77162876 | MS.gene06902:CDS |
| ACCAAGGGTTTGCAGATCAC+GGG | 0.440461 | 3.2:+77164118 | MS.gene06902:CDS |
| TTATCAGCTGAAAGAGATAA+TGG | 0.442089 | 3.2:+77165344 | MS.gene06902:CDS |
| CTATAAAGTGAATGACTTGT+TGG | 0.462035 | 3.2:+77162819 | MS.gene06902:CDS |
| TTTGGTGTGATTGGTCTGCT+TGG | 0.467620 | 3.2:-77165171 | None:intergenic |
| GCTGATTTGCGTGGCTCAGA+AGG | 0.467862 | 3.2:-77165311 | None:intergenic |
| TACAGACCTAAATCTTTCTT+GGG | 0.473875 | 3.2:-77164679 | None:intergenic |
| ATATTTCGACTTTGTGAGGT+TGG | 0.481617 | 3.2:-77164310 | None:intergenic |
| GGGGCGTTCCCAACAGTCAT+TGG | 0.483025 | 3.2:+77164140 | MS.gene06902:CDS |
| GCCACTCATCTTCGTCATCA+AGG | 0.483644 | 3.2:-77164344 | None:intergenic |
| ACCTAAATCTTTCTTGGGCA+TGG | 0.484697 | 3.2:-77164674 | None:intergenic |
| TACCAAGGGTTTGCAGATCA+CGG | 0.499084 | 3.2:+77164117 | MS.gene06902:CDS |
| AACGGTCAGTTTCACCGTAC+CGG | 0.501106 | 3.2:+77165073 | MS.gene06902:CDS |
| CACAAGCGTTACGTCTTGCC+AGG | 0.503666 | 3.2:+77164183 | MS.gene06902:CDS |
| ACTGATCACCAATGACTGTT+GGG | 0.509952 | 3.2:-77164148 | None:intergenic |
| CCCCGTGATCTGCAAACCCT+TGG | 0.511606 | 3.2:-77164119 | None:intergenic |
| TGACACGCTTTATACATACT+TGG | 0.511924 | 3.2:+77165445 | MS.gene06902:CDS |
| TTTACTTTCATTCATGGGGA+AGG | 0.513085 | 3.2:+77162294 | None:intergenic |
| CAGTACGCAGAAGTGGGAAC+CGG | 0.514452 | 3.2:-77165092 | None:intergenic |
| GAGGTTGTACAGAAGGTGAT+GGG | 0.517973 | 3.2:-77164621 | None:intergenic |
| TACTGATCACCAATGACTGT+TGG | 0.518974 | 3.2:-77164149 | None:intergenic |
| GAAGTGAATGAAAAGGGTCC+AGG | 0.526656 | 3.2:-77164649 | None:intergenic |
| CTACATATTTCGACTTTGTG+AGG | 0.533299 | 3.2:-77164314 | None:intergenic |
| CGAGATCCAGTACGCAGAAG+TGG | 0.545253 | 3.2:-77165099 | None:intergenic |
| CGCAGAAGTGGGAACCGGTA+CGG | 0.553636 | 3.2:-77165087 | None:intergenic |
| CATGGTGGAAGTGAATGAAA+AGG | 0.555407 | 3.2:-77164656 | None:intergenic |
| CTCACAAAGTCGAAATATGT+AGG | 0.560024 | 3.2:+77164315 | MS.gene06902:CDS |
| AAGCAGACGGAAGTCTAAGA+AGG | 0.564557 | 3.2:+77165421 | MS.gene06902:CDS |
| TCAGTTGGGGAGACCATGGT+TGG | 0.565153 | 3.2:+77164285 | MS.gene06902:intron |
| CCAAGGGTTTGCAGATCACG+GGG | 0.566119 | 3.2:+77164119 | MS.gene06902:CDS |
| ATGTGGTACACTAGAGAATG+AGG | 0.566853 | 3.2:+77164091 | MS.gene06902:intron |
| GGTCTCTGAGGTTGTACAGA+AGG | 0.570648 | 3.2:-77164628 | None:intergenic |
| TGAGGTTGTACAGAAGGTGA+TGG | 0.570930 | 3.2:-77164622 | None:intergenic |
| TGTGAGGTTGGCACCAACCA+TGG | 0.575403 | 3.2:-77164298 | None:intergenic |
| CAGAGTGGTAGAAACACTGA+AGG | 0.577569 | 3.2:+77162744 | MS.gene06902:intron |
| AATTTCAGTTGGGGAGACCA+TGG | 0.585476 | 3.2:+77164281 | MS.gene06902:intron |
| ATGGTGGAAGTGAATGAAAA+GGG | 0.586184 | 3.2:-77164655 | None:intergenic |
| CGCATTGAAGCTGATTTGCG+TGG | 0.595222 | 3.2:-77165320 | None:intergenic |
| GAGTGGCCTCACTTTAGGAA+TGG | 0.598543 | 3.2:+77164360 | MS.gene06902:CDS |
| TCTGTACAACCTCAGAGACC+TGG | 0.603024 | 3.2:+77164631 | MS.gene06902:CDS |
| TAAATCTTTCTTGGGCATGG+TGG | 0.605827 | 3.2:-77164671 | None:intergenic |
| TAAAAGCAAACGTCTCCTGA+AGG | 0.607398 | 3.2:+77165391 | MS.gene06902:CDS |
| TGAAGGCCTTATTAAGCAGA+CGG | 0.609310 | 3.2:+77165408 | MS.gene06902:CDS |
| GAGATACCATTCCTAAAGTG+AGG | 0.609896 | 3.2:-77164366 | None:intergenic |
| GCTCTTTGATGATAGCCTCA+AGG | 0.611030 | 3.2:+77162390 | MS.gene06902:CDS |
| CTGATTTGCGTGGCTCAGAA+GGG | 0.617785 | 3.2:-77165310 | None:intergenic |
| AAGGGTTTGCAGATCACGGG+GGG | 0.624565 | 3.2:+77164121 | MS.gene06902:CDS |
| GCCTTGATGACGAAGATGAG+TGG | 0.627348 | 3.2:+77164343 | MS.gene06902:CDS |
| GAGATCCAGTACGCAGAAGT+GGG | 0.638943 | 3.2:-77165098 | None:intergenic |
| CAAAGCTCTTGTAAATACAG+TGG | 0.639014 | 3.2:+77162777 | MS.gene06902:CDS |
| GAATGACTTGTTGGACGAGA+AGG | 0.642436 | 3.2:+77162828 | MS.gene06902:CDS |
| CACCAATATCTACAACAACA+AGG | 0.643871 | 3.2:+77164501 | MS.gene06902:CDS |
| AGAGAATGAGGAGTTACCAA+GGG | 0.644511 | 3.2:+77164103 | MS.gene06902:intron |
| GAAAAGGGTCCAGGTCTCTG+AGG | 0.654241 | 3.2:-77164640 | None:intergenic |
| TAGAGAATGAGGAGTTACCA+AGG | 0.667769 | 3.2:+77164102 | MS.gene06902:intron |
| AGGTTGTACAGAAGGTGATG+GGG | 0.679715 | 3.2:-77164620 | None:intergenic |
| CAAGGGTTTGCAGATCACGG+GGG | 0.681301 | 3.2:+77164120 | MS.gene06902:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAACAATAATAAGTAA+TGG | - | chr3.2:77164949-77164968 | None:intergenic | 15.0% |
| !! | TAAGTGAAATCAAAATATTA+TGG | - | chr3.2:77164400-77164419 | None:intergenic | 15.0% |
| !! | TTGCAATTATTTATGAAAAA+AGG | + | chr3.2:77163580-77163599 | MS.gene06902:intron | 15.0% |
| !!! | AACATAAGATTTTATATAGT+AGG | - | chr3.2:77164431-77164450 | None:intergenic | 15.0% |
| !!! | TGGTTGTTTTATAAAAATAT+TGG | + | chr3.2:77164789-77164808 | MS.gene06902:intron | 15.0% |
| !!! | TGTTTTATAAAAATATTGGA+TGG | + | chr3.2:77164793-77164812 | MS.gene06902:intron | 15.0% |
| !! | AAAAAAAATCAAAATCTGCT+TGG | - | chr3.2:77164827-77164846 | None:intergenic | 20.0% |
| !! | ATTATATTATGGGATTAAGT+TGG | + | chr3.2:77164540-77164559 | MS.gene06902:intron | 20.0% |
| !! | GTTTGAATTCTTTATTATCT+TGG | + | chr3.2:77164025-77164044 | MS.gene06902:intron | 20.0% |
| !! | TAATTGCAAAGATGAATAAT+TGG | + | chr3.2:77162946-77162965 | MS.gene06902:intron | 20.0% |
| !! | TTACATGTATTGAAGATAAA+CGG | + | chr3.2:77165055-77165074 | MS.gene06902:intron | 20.0% |
| !!! | AACAATAATAAGTAATGGAT+TGG | - | chr3.2:77164944-77164963 | None:intergenic | 20.0% |
| !!! | ATTGATTTGGTTATTACTTA+TGG | + | chr3.2:77164733-77164752 | MS.gene06902:intron | 20.0% |
| !!! | TATTATTTTGATGCAGTAAA+GGG | + | chr3.2:77164593-77164612 | MS.gene06902:intron | 20.0% |
| !!! | TTATTATTTTGATGCAGTAA+AGG | + | chr3.2:77164592-77164611 | MS.gene06902:intron | 20.0% |
| ! | AACTTCAACAATTTCAAGAA+AGG | - | chr3.2:77164008-77164027 | None:intergenic | 25.0% |
| ! | ACAAATGCTGCATTATATTA+TGG | + | chr3.2:77164529-77164548 | MS.gene06902:intron | 25.0% |
| ! | ACTCTTTACATAATTTCAGT+TGG | + | chr3.2:77164270-77164289 | MS.gene06902:intron | 25.0% |
| ! | ACTTCAACAATTTCAAGAAA+GGG | - | chr3.2:77164007-77164026 | None:intergenic | 25.0% |
| ! | ATAATATCCTTATTGCTTTG+AGG | + | chr3.2:77163032-77163051 | MS.gene06902:intron | 25.0% |
| ! | CAAATGCTGCATTATATTAT+GGG | + | chr3.2:77164530-77164549 | MS.gene06902:intron | 25.0% |
| ! | CATATAAACCTCATCAAAAT+TGG | - | chr3.2:77162359-77162378 | None:intergenic | 25.0% |
| ! | CTAAAAAGATTTAGGTACTT+AGG | - | chr3.2:77163495-77163514 | None:intergenic | 25.0% |
| ! | CTCTTTACATAATTTCAGTT+GGG | + | chr3.2:77164271-77164290 | MS.gene06902:intron | 25.0% |
| ! | GAAGTTATTGCTCATATATT+TGG | + | chr3.2:77163779-77163798 | MS.gene06902:intron | 25.0% |
| ! | TCACTCAAAATCAATAACTA+AGG | - | chr3.2:77163870-77163889 | None:intergenic | 25.0% |
| ! | TCTTTACATAATTTCAGTTG+GGG | + | chr3.2:77164272-77164291 | MS.gene06902:intron | 25.0% |
| ! | TTGGTTATTACTTATGGATT+TGG | + | chr3.2:77164739-77164758 | MS.gene06902:intron | 25.0% |
| !! | CAACATTTATTTCTTGAGAT+AGG | + | chr3.2:77163007-77163026 | MS.gene06902:intron | 25.0% |
| !! | TGTTTTGTATTAGAAGGATT+TGG | - | chr3.2:77165192-77165211 | None:intergenic | 25.0% |
| !!! | ACTCTTTGTTTTGTATTAGA+AGG | - | chr3.2:77165198-77165217 | None:intergenic | 25.0% |
| !!! | TTTCTGTCATTTTCACATAA+AGG | + | chr3.2:77164989-77165008 | MS.gene06902:intron | 25.0% |
| AAAATACCAAGCTTGAAATC+TGG | + | chr3.2:77164856-77164875 | MS.gene06902:intron | 30.0% | |
| AAATCATGCTTCGAATTGAA+TGG | - | chr3.2:77163956-77163975 | None:intergenic | 30.0% | |
| AAATCATTGACATGACTTCT+AGG | + | chr3.2:77162984-77163003 | MS.gene06902:intron | 30.0% | |
| AAATGTGGAGGAAATCAATA+TGG | - | chr3.2:77164972-77164991 | None:intergenic | 30.0% | |
| AACCAAATCAATGAACTTCT+GGG | - | chr3.2:77164725-77164744 | None:intergenic | 30.0% | |
| AAGAAAATGTTATACATGCC+TGG | - | chr3.2:77164204-77164223 | None:intergenic | 30.0% | |
| ATCAGTATCTCAAAGCAATA+AGG | - | chr3.2:77163383-77163402 | None:intergenic | 30.0% | |
| ATGTGAAAATGACAGAAATG+TGG | - | chr3.2:77164987-77165006 | None:intergenic | 30.0% | |
| CAACAAGTCATTCACTTTAT+AGG | - | chr3.2:77162821-77162840 | None:intergenic | 30.0% | |
| GCTAAGCACTAAAAAGATTT+AGG | - | chr3.2:77163503-77163522 | None:intergenic | 30.0% | |
| GTAGTTGATCTACTCATATT+TGG | - | chr3.2:77165144-77165163 | None:intergenic | 30.0% | |
| TAAAATCCACACAAATACCA+GGG | - | chr3.2:77163906-77163925 | None:intergenic | 30.0% | |
| TAACCAAATCAATGAACTTC+TGG | - | chr3.2:77164726-77164745 | None:intergenic | 30.0% | |
| TAAGCATACAACCATGATTA+AGG | - | chr3.2:77165227-77165246 | None:intergenic | 30.0% | |
| TACAGACCTAAATCTTTCTT+GGG | - | chr3.2:77164682-77164701 | None:intergenic | 30.0% | |
| TATAGAGAATATCACAGCAT+TGG | - | chr3.2:77162694-77162713 | None:intergenic | 30.0% | |
| TCACAGAACATCTTTACTTT+CGG | + | chr3.2:77163626-77163645 | MS.gene06902:intron | 30.0% | |
| TTAAAATCCACACAAATACC+AGG | - | chr3.2:77163907-77163926 | None:intergenic | 30.0% | |
| TTATCAGCTGAAAGAGATAA+TGG | + | chr3.2:77165344-77165363 | MS.gene06902:CDS | 30.0% | |
| TTGATTTACTGCACTTTATC+TGG | - | chr3.2:77162917-77162936 | None:intergenic | 30.0% | |
| ! | AAATCATCGACATGACTTTT+AGG | + | chr3.2:77163325-77163344 | MS.gene06902:intron | 30.0% |
| ! | CTATAAAGTGAATGACTTGT+TGG | + | chr3.2:77162819-77162838 | MS.gene06902:CDS | 30.0% |
| ! | TCTATCTTATGTTTTCAGAG+TGG | + | chr3.2:77162729-77162748 | MS.gene06902:intron | 30.0% |
| ! | TGTATTTACAAGAGCTTTGA+TGG | - | chr3.2:77162776-77162795 | None:intergenic | 30.0% |
| !! | AAAAGCATTTCATTTCTAGC+TGG | + | chr3.2:77163086-77163105 | MS.gene06902:intron | 30.0% |
| !! | GACATTGTTTTTCCTTAATG+TGG | + | chr3.2:77164074-77164093 | MS.gene06902:intron | 30.0% |
| !! | TACCTTGTTGTTGTAGATAT+TGG | - | chr3.2:77164506-77164525 | None:intergenic | 30.0% |
| !! | TATGGGATTAAGTTGGTTAA+TGG | + | chr3.2:77164547-77164566 | MS.gene06902:intron | 30.0% |
| !!! | ACATATGTTTCGCTACTTTT+TGG | + | chr3.2:77162414-77162433 | MS.gene06902:intron | 30.0% |
| !!! | CATATGTTTCGCTACTTTTT+GGG | + | chr3.2:77162415-77162434 | MS.gene06902:intron | 30.0% |
| AACTAAGCAACAGATGCATT+AGG | - | chr3.2:77162478-77162497 | None:intergenic | 35.0% | |
| ACCAAATCAATGAACTTCTG+GGG | - | chr3.2:77164724-77164743 | None:intergenic | 35.0% | |
| ACGTGTATCTTGTATTGAAC+AGG | + | chr3.2:77162876-77162895 | MS.gene06902:CDS | 35.0% | |
| AGAGTAAGTGACCTTAATCA+TGG | + | chr3.2:77165213-77165232 | MS.gene06902:intron | 35.0% | |
| ATATTTCGACTTTGTGAGGT+TGG | - | chr3.2:77164313-77164332 | None:intergenic | 35.0% | |
| ATTTACTGCACTTTATCTGG+AGG | - | chr3.2:77162914-77162933 | None:intergenic | 35.0% | |
| CAAAGCTCTTGTAAATACAG+TGG | + | chr3.2:77162777-77162796 | MS.gene06902:CDS | 35.0% | |
| CACCAATATCTACAACAACA+AGG | + | chr3.2:77164501-77164520 | MS.gene06902:CDS | 35.0% | |
| CCTTTCAATAACTGTATCCT+CGG | + | chr3.2:77163815-77163834 | MS.gene06902:intron | 35.0% | |
| CTACATATTTCGACTTTGTG+AGG | - | chr3.2:77164317-77164336 | None:intergenic | 35.0% | |
| CTCACAAAGTCGAAATATGT+AGG | + | chr3.2:77164315-77164334 | MS.gene06902:CDS | 35.0% | |
| GTAAATACAGTGGACCATTT+AGG | + | chr3.2:77162787-77162806 | MS.gene06902:CDS | 35.0% | |
| GTACAGACCTAAATCTTTCT+TGG | - | chr3.2:77164683-77164702 | None:intergenic | 35.0% | |
| TATAGGTCACAGAACCTAAA+TGG | - | chr3.2:77162804-77162823 | None:intergenic | 35.0% | |
| TATGATCTTTCATACTTCCG+AGG | - | chr3.2:77163835-77163854 | None:intergenic | 35.0% | |
| TGAAAATGACAGAAATGTGG+AGG | - | chr3.2:77164984-77165003 | None:intergenic | 35.0% | |
| TGACACGCTTTATACATACT+TGG | + | chr3.2:77165445-77165464 | MS.gene06902:CDS | 35.0% | |
| TTCTCTAGTGTACCACATTA+AGG | - | chr3.2:77164089-77164108 | None:intergenic | 35.0% | |
| TTGGAAGCTTCTTGAGAAAA+AGG | - | chr3.2:77162340-77162359 | None:intergenic | 35.0% | |
| ! | AACTTTTCATCTCTTCACGT+AGG | + | chr3.2:77162543-77162562 | MS.gene06902:intron | 35.0% |
| ! | ACGTAACGCTTGTGATATTT+TGG | - | chr3.2:77164177-77164196 | None:intergenic | 35.0% |
| ! | ATGGTGGAAGTGAATGAAAA+GGG | - | chr3.2:77164658-77164677 | None:intergenic | 35.0% |
| ! | TAGCAACTCACATCTGTTTT+TGG | - | chr3.2:77162639-77162658 | None:intergenic | 35.0% |
| !! | AAGTAATGGATTGGATTGTC+TGG | - | chr3.2:77164935-77164954 | None:intergenic | 35.0% |
| !! | AGAAGCTTCCAATTTTGATG+AGG | + | chr3.2:77162348-77162367 | MS.gene06902:CDS | 35.0% |
| !! | CTACTCATATTTGGTGTTGT+AGG | - | chr3.2:77165135-77165154 | None:intergenic | 35.0% |
| !! | TTAGAAGGATTTGGTGTGAT+TGG | - | chr3.2:77165183-77165202 | None:intergenic | 35.0% |
| !!! | CATCTGTTTTTGGTCATCAT+TGG | - | chr3.2:77162629-77162648 | None:intergenic | 35.0% |
| ACAATACCCTGGTATTTGTG+TGG | + | chr3.2:77163897-77163916 | MS.gene06902:intron | 40.0% | |
| ACCAGTACCTCAAAGCAATA+AGG | - | chr3.2:77163042-77163061 | None:intergenic | 40.0% | |
| ACCATGCCCAAGAAAGATTT+AGG | + | chr3.2:77164673-77164692 | MS.gene06902:CDS | 40.0% | |
| ACCTAAATCTTTCTTGGGCA+TGG | - | chr3.2:77164677-77164696 | None:intergenic | 40.0% | |
| ACTGATCACCAATGACTGTT+GGG | - | chr3.2:77164151-77164170 | None:intergenic | 40.0% | |
| AGACTTCCGTCTGCTTAATA+AGG | - | chr3.2:77165417-77165436 | None:intergenic | 40.0% | |
| AGAGAATGAGGAGTTACCAA+GGG | + | chr3.2:77164103-77164122 | MS.gene06902:intron | 40.0% | |
| AGCGAAACATATGTACCTTG+AGG | - | chr3.2:77162408-77162427 | None:intergenic | 40.0% | |
| AGTTGGTTAATGGCTCAATG+AGG | + | chr3.2:77164557-77164576 | MS.gene06902:intron | 40.0% | |
| ATGTGGTACACTAGAGAATG+AGG | + | chr3.2:77164091-77164110 | MS.gene06902:intron | 40.0% | |
| CCGAGGATACAGTTATTGAA+AGG | - | chr3.2:77163818-77163837 | None:intergenic | 40.0% | |
| CTTCGAATTGAATGGAGCAA+AGG | - | chr3.2:77163948-77163967 | None:intergenic | 40.0% | |
| GAAGCTTCTTGAGAAAAAGG+CGG | - | chr3.2:77162337-77162356 | None:intergenic | 40.0% | |
| GAGAAGGTTGTTGAAGTTTC+TGG | + | chr3.2:77162844-77162863 | MS.gene06902:CDS | 40.0% | |
| GAGATACCATTCCTAAAGTG+AGG | - | chr3.2:77164369-77164388 | None:intergenic | 40.0% | |
| GGACTCAAATGTTGATCCAA+CGG | + | chr3.2:77164877-77164896 | MS.gene06902:intron | 40.0% | |
| GTGAAAGTTCAACAATACCC+TGG | + | chr3.2:77163886-77163905 | MS.gene06902:intron | 40.0% | |
| GTTGGTTAATGGCTCAATGA+GGG | + | chr3.2:77164558-77164577 | MS.gene06902:intron | 40.0% | |
| TAAAAGCAAACGTCTCCTGA+AGG | + | chr3.2:77165391-77165410 | MS.gene06902:CDS | 40.0% | |
| TAAATCTTTCTTGGGCATGG+TGG | - | chr3.2:77164674-77164693 | None:intergenic | 40.0% | |
| TACTGATCACCAATGACTGT+TGG | - | chr3.2:77164152-77164171 | None:intergenic | 40.0% | |
| TAGAGAATGAGGAGTTACCA+AGG | + | chr3.2:77164102-77164121 | MS.gene06902:intron | 40.0% | |
| TGTATGCTTACTCAACGCAT+TGG | + | chr3.2:77165237-77165256 | MS.gene06902:intron | 40.0% | |
| TTGAGTCCAGATTTCAAGCT+TGG | - | chr3.2:77164865-77164884 | None:intergenic | 40.0% | |
| ! | ACCCCAGAAGTTCATTGATT+TGG | + | chr3.2:77164720-77164739 | MS.gene06902:intron | 40.0% |
| ! | ATGATTTTGCAACTGCAGCT+GGG | + | chr3.2:77163969-77163988 | MS.gene06902:intron | 40.0% |
| ! | CATGGTGGAAGTGAATGAAA+AGG | - | chr3.2:77164659-77164678 | None:intergenic | 40.0% |
| !! | AGGAGACGTTTGCTTTTACT+CGG | - | chr3.2:77165389-77165408 | None:intergenic | 40.0% |
| !! | ATATCACAGCATTGGCAAAC+AGG | - | chr3.2:77162686-77162705 | None:intergenic | 40.0% |
| !! | TCCTTATTGCTTTGAGGTAC+TGG | + | chr3.2:77163038-77163057 | MS.gene06902:intron | 40.0% |
| !! | TGAAGGCCTTATTAAGCAGA+CGG | + | chr3.2:77165408-77165427 | MS.gene06902:CDS | 40.0% |
| AAGATGAGTGGCCTCACTTT+AGG | + | chr3.2:77164355-77164374 | MS.gene06902:CDS | 45.0% | |
| AAGCAGACGGAAGTCTAAGA+AGG | + | chr3.2:77165421-77165440 | MS.gene06902:CDS | 45.0% | |
| AATTGCAGCTCGAACAGCTT+TGG | - | chr3.2:77164474-77164493 | None:intergenic | 45.0% | |
| AATTTCAGTTGGGGAGACCA+TGG | + | chr3.2:77164281-77164300 | MS.gene06902:intron | 45.0% | |
| AGGTTGTACAGAAGGTGATG+GGG | - | chr3.2:77164623-77164642 | None:intergenic | 45.0% | |
| ATTGCAGCTCGAACAGCTTT+GGG | - | chr3.2:77164473-77164492 | None:intergenic | 45.0% | |
| CAGAGTGGTAGAAACACTGA+AGG | + | chr3.2:77162744-77162763 | MS.gene06902:intron | 45.0% | |
| GAAGTGAATGAAAAGGGTCC+AGG | - | chr3.2:77164652-77164671 | None:intergenic | 45.0% | |
| GAGGTTGTACAGAAGGTGAT+GGG | - | chr3.2:77164624-77164643 | None:intergenic | 45.0% | |
| GTCAACACATTTGTGACCGT+TGG | - | chr3.2:77164896-77164915 | None:intergenic | 45.0% | |
| GTCTGCTTAATAAGGCCTTC+AGG | - | chr3.2:77165409-77165428 | None:intergenic | 45.0% | |
| GTGAGTTGCTATGCTAAAGC+TGG | + | chr3.2:77162648-77162667 | MS.gene06902:intron | 45.0% | |
| TACCAAGGGTTTGCAGATCA+CGG | + | chr3.2:77164117-77164136 | MS.gene06902:CDS | 45.0% | |
| TGAGGTTGTACAGAAGGTGA+TGG | - | chr3.2:77164625-77164644 | None:intergenic | 45.0% | |
| ! | CATGATTTTGCAACTGCAGC+TGG | + | chr3.2:77163968-77163987 | MS.gene06902:intron | 45.0% |
| ! | GCTCTTTGATGATAGCCTCA+AGG | + | chr3.2:77162390-77162409 | MS.gene06902:CDS | 45.0% |
| !! | GAATGACTTGTTGGACGAGA+AGG | + | chr3.2:77162828-77162847 | MS.gene06902:CDS | 45.0% |
| !! | GGAGACGTTTGCTTTTACTC+GGG | - | chr3.2:77165388-77165407 | None:intergenic | 45.0% |
| !! | TTTGGTGTGATTGGTCTGCT+TGG | - | chr3.2:77165174-77165193 | None:intergenic | 45.0% |
| !!! | GTGATTGGTCTGCTTGGTTT+TGG | - | chr3.2:77165168-77165187 | None:intergenic | 45.0% |
| AACGGTCAGTTTCACCGTAC+CGG | + | chr3.2:77165073-77165092 | MS.gene06902:CDS | 50.0% | |
| ACCAAGGGTTTGCAGATCAC+GGG | + | chr3.2:77164118-77164137 | MS.gene06902:CDS | 50.0% | |
| CTAGTCAGTCAGCACTTTGG+TGG | + | chr3.2:77164769-77164788 | MS.gene06902:intron | 50.0% | |
| GAGATCCAGTACGCAGAAGT+GGG | - | chr3.2:77165101-77165120 | None:intergenic | 50.0% | |
| GCCACTCATCTTCGTCATCA+AGG | - | chr3.2:77164347-77164366 | None:intergenic | 50.0% | |
| GCTCTAGTCAGTCAGCACTT+TGG | + | chr3.2:77164766-77164785 | MS.gene06902:intron | 50.0% | |
| TCTGTACAACCTCAGAGACC+TGG | + | chr3.2:77164631-77164650 | MS.gene06902:CDS | 50.0% | |
| ! | CTGATTTGCGTGGCTCAGAA+GGG | - | chr3.2:77165313-77165332 | None:intergenic | 50.0% |
| ! | GAGTGGCCTCACTTTAGGAA+TGG | + | chr3.2:77164360-77164379 | MS.gene06902:CDS | 50.0% |
| !! | CGCATTGAAGCTGATTTGCG+TGG | - | chr3.2:77165323-77165342 | None:intergenic | 50.0% |
| !! | GCCTTGATGACGAAGATGAG+TGG | + | chr3.2:77164343-77164362 | MS.gene06902:CDS | 50.0% |
| !! | GGTCTCTGAGGTTGTACAGA+AGG | - | chr3.2:77164631-77164650 | None:intergenic | 50.0% |
| AAGGGTTTGCAGATCACGGG+GGG | + | chr3.2:77164121-77164140 | MS.gene06902:CDS | 55.0% | |
| CAAGGGTTTGCAGATCACGG+GGG | + | chr3.2:77164120-77164139 | MS.gene06902:CDS | 55.0% | |
| CACAAGCGTTACGTCTTGCC+AGG | + | chr3.2:77164183-77164202 | MS.gene06902:CDS | 55.0% | |
| CAGTACGCAGAAGTGGGAAC+CGG | - | chr3.2:77165095-77165114 | None:intergenic | 55.0% | |
| CCAAGGGTTTGCAGATCACG+GGG | + | chr3.2:77164119-77164138 | MS.gene06902:CDS | 55.0% | |
| CGAGATCCAGTACGCAGAAG+TGG | - | chr3.2:77165102-77165121 | None:intergenic | 55.0% | |
| GAAAAGGGTCCAGGTCTCTG+AGG | - | chr3.2:77164643-77164662 | None:intergenic | 55.0% | |
| TCAGTTGGGGAGACCATGGT+TGG | + | chr3.2:77164285-77164304 | MS.gene06902:intron | 55.0% | |
| TGTGAGGTTGGCACCAACCA+TGG | - | chr3.2:77164301-77164320 | None:intergenic | 55.0% | |
| !! | GCTGATTTGCGTGGCTCAGA+AGG | - | chr3.2:77165314-77165333 | None:intergenic | 55.0% |
| !! | TGGCTCAGAAGGGTACTGGT+AGG | - | chr3.2:77165303-77165322 | None:intergenic | 55.0% |
| CCCCGTGATCTGCAAACCCT+TGG | - | chr3.2:77164122-77164141 | None:intergenic | 60.0% | |
| CGCAGAAGTGGGAACCGGTA+CGG | - | chr3.2:77165090-77165109 | None:intergenic | 60.0% | |
| CGGTTCCCACTTCTGCGTAC+TGG | + | chr3.2:77165093-77165112 | MS.gene06902:CDS | 60.0% | |
| ! | GGGGCGTTCCCAACAGTCAT+TGG | + | chr3.2:77164140-77164159 | MS.gene06902:CDS | 60.0% |
| ! | TGCGTGGCTCAGAAGGGTAC+TGG | - | chr3.2:77165307-77165326 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77162307 | 77165478 | 77162307 | ID=MS.gene06902 |
| chr3.2 | mRNA | 77162307 | 77165478 | 77162307 | ID=MS.gene06902.t1;Parent=MS.gene06902 |
| chr3.2 | exon | 77162307 | 77162411 | 77162307 | ID=MS.gene06902.t1.exon1;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77162307 | 77162411 | 77162307 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| chr3.2 | exon | 77162565 | 77162647 | 77162565 | ID=MS.gene06902.t1.exon2;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77162565 | 77162647 | 77162565 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| chr3.2 | exon | 77162747 | 77162897 | 77162747 | ID=MS.gene06902.t1.exon3;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77162747 | 77162897 | 77162747 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| chr3.2 | exon | 77164105 | 77164204 | 77164105 | ID=MS.gene06902.t1.exon4;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77164105 | 77164204 | 77164105 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| chr3.2 | exon | 77164289 | 77164381 | 77164289 | ID=MS.gene06902.t1.exon5;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77164289 | 77164381 | 77164289 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| chr3.2 | exon | 77164477 | 77164522 | 77164477 | ID=MS.gene06902.t1.exon6;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77164477 | 77164522 | 77164477 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| chr3.2 | exon | 77164609 | 77164694 | 77164609 | ID=MS.gene06902.t1.exon7;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77164609 | 77164694 | 77164609 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| chr3.2 | exon | 77165070 | 77165215 | 77165070 | ID=MS.gene06902.t1.exon8;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77165070 | 77165215 | 77165070 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| chr3.2 | exon | 77165308 | 77165478 | 77165308 | ID=MS.gene06902.t1.exon9;Parent=MS.gene06902.t1 |
| chr3.2 | CDS | 77165308 | 77165478 | 77165308 | ID=cds.MS.gene06902.t1;Parent=MS.gene06902.t1 |
| Gene Sequence |
| Protein sequence |
