Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06693.t1 | XP_003602276.1 | 94.8 | 326 | 17 | 0 | 1 | 326 | 1 | 326 | 1.90E-137 | 498.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06693.t1 | Q9M3A3 | 67.9 | 318 | 93 | 3 | 11 | 326 | 2 | 312 | 6.0e-100 | 365.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06693.t1 | G7J7G6 | 94.8 | 326 | 17 | 0 | 1 | 326 | 1 | 326 | 1.4e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057119 | MS.gene06693 | 0.995911 | 2.96E-221 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06693 | MS.gene31641 | PPI |
| MS.gene06693 | MS.gene059164 | PPI |
| MS.gene06693 | MS.gene98197 | PPI |
| MS.gene06693 | MS.gene013576 | PPI |
| MS.gene92121 | MS.gene06693 | PPI |
| MS.gene06693 | MS.gene019711 | PPI |
| MS.gene06693 | MS.gene06902 | PPI |
| MS.gene06693 | MS.gene059163 | PPI |
| MS.gene06693 | MS.gene024488 | PPI |
| MS.gene06693 | MS.gene057119 | PPI |
| MS.gene06693 | MS.gene79701 | PPI |
| MS.gene06693 | MS.gene22839 | PPI |
| MS.gene06693 | MS.gene050599 | PPI |
| MS.gene06693 | MS.gene54480 | PPI |
| MS.gene06693 | MS.gene021449 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06693.t1 | MTR_3g091760 | 97.853 | 326 | 7 | 0 | 1 | 326 | 1 | 326 | 0.0 | 655 |
| MS.gene06693.t1 | MTR_1g007880 | 74.924 | 327 | 77 | 3 | 1 | 326 | 1 | 323 | 3.21e-179 | 498 |
| MS.gene06693.t1 | MTR_1g007880 | 74.924 | 327 | 77 | 3 | 1 | 326 | 20 | 342 | 1.30e-178 | 498 |
| MS.gene06693.t1 | MTR_3g091760 | 98.190 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 2.10e-162 | 453 |
| MS.gene06693.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 3.63e-42 | 145 |
| MS.gene06693.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 1.59e-41 | 144 |
| MS.gene06693.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 2.96e-41 | 146 |
| MS.gene06693.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 5.94e-41 | 145 |
| MS.gene06693.t1 | MTR_7g116710 | 48.413 | 126 | 65 | 0 | 21 | 146 | 2 | 127 | 1.81e-35 | 130 |
| MS.gene06693.t1 | MTR_6g087680 | 32.374 | 139 | 91 | 2 | 24 | 160 | 19 | 156 | 1.77e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06693.t1 | AT3G49290 | 69.811 | 318 | 87 | 4 | 11 | 326 | 2 | 312 | 3.43e-152 | 429 |
| MS.gene06693.t1 | AT3G49290 | 69.811 | 318 | 87 | 4 | 11 | 326 | 2 | 312 | 3.43e-152 | 429 |
| MS.gene06693.t1 | AT5G24310 | 67.683 | 328 | 94 | 6 | 4 | 326 | 1 | 321 | 1.01e-146 | 416 |
| MS.gene06693.t1 | AT5G24310 | 68.847 | 321 | 88 | 6 | 11 | 326 | 2 | 315 | 8.70e-146 | 413 |
| MS.gene06693.t1 | AT5G24310 | 65.244 | 328 | 88 | 7 | 4 | 326 | 1 | 307 | 4.45e-136 | 389 |
| MS.gene06693.t1 | AT5G24310 | 70.320 | 219 | 61 | 3 | 11 | 226 | 2 | 219 | 2.43e-100 | 295 |
| MS.gene06693.t1 | AT5G42030 | 37.377 | 305 | 149 | 5 | 14 | 314 | 12 | 278 | 8.88e-55 | 180 |
| MS.gene06693.t1 | AT5G42030 | 39.245 | 265 | 128 | 4 | 14 | 274 | 12 | 247 | 5.38e-53 | 177 |
| MS.gene06693.t1 | AT5G42030 | 45.349 | 172 | 82 | 1 | 14 | 185 | 12 | 171 | 1.28e-43 | 149 |
| MS.gene06693.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 1.78e-36 | 133 |
| MS.gene06693.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 1.92e-36 | 133 |
| MS.gene06693.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 3.60e-36 | 133 |
| MS.gene06693.t1 | AT5G42030 | 33.333 | 255 | 128 | 5 | 64 | 314 | 15 | 231 | 1.07e-30 | 116 |
Find 77 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGGTTGTTGAAGTTTC+TGG | 0.188763 | 3.3:+76461348 | MS.gene06693:CDS |
| ACGTAACGCTTGTGATATTT+TGG | 0.201872 | 3.3:-76462678 | None:intergenic |
| CATATAAACCTCATCAAAAT+TGG | 0.228895 | 3.3:-76460861 | None:intergenic |
| CAACAAGTCATTCACTTTAT+AGG | 0.236527 | 3.3:-76461322 | None:intergenic |
| TTGGAAGCTTCTTGAGAAAA+AGG | 0.270340 | 3.3:-76460842 | None:intergenic |
| TGTATTTACAAGAGCTTTGA+TGG | 0.282220 | 3.3:-76461277 | None:intergenic |
| AGACTTCCGTCTGCTTAATA+AGG | 0.282251 | 3.3:-76463937 | None:intergenic |
| GTGATTGGTCTGCTTGGTTT+TGG | 0.288333 | 3.3:-76463685 | None:intergenic |
| GTACAGACCTAAATCTTTCT+TGG | 0.329663 | 3.3:-76463184 | None:intergenic |
| GTAGTTGATCTGCTCATATT+TGG | 0.333872 | 3.3:-76463661 | None:intergenic |
| ACCATGCCCAAGAAAGATTT+AGG | 0.343069 | 3.3:+76463177 | MS.gene06693:CDS |
| ATCAGCTTCAATGCGATTAT+CGG | 0.346690 | 3.3:+76463851 | MS.gene06693:CDS |
| AAGATGAGTGGCCTCACTTT+AGG | 0.348049 | 3.3:+76462859 | MS.gene06693:CDS |
| CGGTTCCCACTTCTGCGTAC+TGG | 0.400723 | 3.3:+76463613 | MS.gene06693:CDS |
| TTAGAAGGATTTGGTGTGAT+TGG | 0.416608 | 3.3:-76463700 | None:intergenic |
| TTACATGTATTGAAGATAAA+CGG | 0.433228 | 3.3:+76463575 | MS.gene06693:intron |
| GTCTGCTTAATAAGGCCTTC+AGG | 0.434013 | 3.3:-76463929 | None:intergenic |
| ACGTGTATCTTGTATTGAAC+AGG | 0.439316 | 3.3:+76461380 | MS.gene06693:CDS |
| TTATCGGCTGAAAGAGATAA+TGG | 0.439947 | 3.3:+76463867 | MS.gene06693:CDS |
| ACCAAGGGTTTGCAGATCAC+GGG | 0.440461 | 3.3:+76462622 | MS.gene06693:CDS |
| TACCTTGTTGTTGTAGATGT+TGG | 0.456352 | 3.3:-76463007 | None:intergenic |
| CTATAAAGTGAATGACTTGT+TGG | 0.462035 | 3.3:+76461323 | MS.gene06693:CDS |
| TTTGGTGTGATTGGTCTGCT+TGG | 0.467620 | 3.3:-76463691 | None:intergenic |
| TGACACACTTTATACATACT+TGG | 0.470816 | 3.3:+76463968 | MS.gene06693:CDS |
| TACAGACCTAAATCTTTCTT+GGG | 0.473875 | 3.3:-76463183 | None:intergenic |
| ATATTTCGACTTTGTGAGGT+TGG | 0.481617 | 3.3:-76462814 | None:intergenic |
| GGGGCGTTCCCAACAGTCAT+TGG | 0.483025 | 3.3:+76462644 | MS.gene06693:CDS |
| GCCACTCATCTTCGTCATCA+AGG | 0.483644 | 3.3:-76462848 | None:intergenic |
| ACCTAAATCTTTCTTGGGCA+TGG | 0.484697 | 3.3:-76463178 | None:intergenic |
| TCTGCTCATATTTGGTGTTG+TGG | 0.484916 | 3.3:-76463653 | None:intergenic |
| CACTTCTGCGTACTGGATCT+CGG | 0.486191 | 3.3:+76463620 | MS.gene06693:CDS |
| TACCAAGGGTTTGCAGATCA+CGG | 0.499084 | 3.3:+76462621 | MS.gene06693:CDS |
| AACGGTCAGTTTCACCGTAC+CGG | 0.501106 | 3.3:+76463593 | MS.gene06693:CDS |
| CACAAGCGTTACGTCTTGCC+AGG | 0.503666 | 3.3:+76462687 | MS.gene06693:CDS |
| ACTGATCACCAATGACTGTT+GGG | 0.509952 | 3.3:-76462652 | None:intergenic |
| CCCCGTGATCTGCAAACCCT+TGG | 0.511606 | 3.3:-76462623 | None:intergenic |
| TTTACTTTCATTCATGGGGA+AGG | 0.513085 | 3.3:+76460799 | None:intergenic |
| TCCTTCTAATACAAAACAAA+GGG | 0.513827 | 3.3:+76463714 | MS.gene06693:CDS |
| CAGTACGCAGAAGTGGGAAC+CGG | 0.514452 | 3.3:-76463612 | None:intergenic |
| TATAGGTCACAGAACCTAGA+TGG | 0.516848 | 3.3:-76461305 | None:intergenic |
| GAGGTTGTACAGAAGGTGAT+GGG | 0.517973 | 3.3:-76463125 | None:intergenic |
| TACTGATCACCAATGACTGT+TGG | 0.518974 | 3.3:-76462653 | None:intergenic |
| GAAGTGAATGAAAAGGGTCC+AGG | 0.526656 | 3.3:-76463153 | None:intergenic |
| GTAAATACAGTAGACCATCT+AGG | 0.531953 | 3.3:+76461291 | MS.gene06693:CDS |
| CTACATATTTCGACTTTGTG+AGG | 0.533299 | 3.3:-76462818 | None:intergenic |
| CGCAGAAGTGGGAACCGGTA+CGG | 0.553636 | 3.3:-76463607 | None:intergenic |
| ATCCTTCTAATACAAAACAA+AGG | 0.555077 | 3.3:+76463713 | MS.gene06693:CDS |
| CATGGTGGAAGTGAATGAAA+AGG | 0.555407 | 3.3:-76463160 | None:intergenic |
| CGAGATCCAGTACGCAGAAG+TGG | 0.556615 | 3.3:-76463619 | None:intergenic |
| CTCACAAAGTCGAAATATGT+AGG | 0.560024 | 3.3:+76462819 | MS.gene06693:CDS |
| AAGCAGACGGAAGTCTAAGA+AGG | 0.564557 | 3.3:+76463944 | MS.gene06693:CDS |
| TCAGTTGGGGAGACCATGGT+TGG | 0.565153 | 3.3:+76462789 | MS.gene06693:intron |
| CCAAGGGTTTGCAGATCACG+GGG | 0.566119 | 3.3:+76462623 | MS.gene06693:CDS |
| ATGTGGTACACTAGAGAATG+AGG | 0.566853 | 3.3:+76462595 | MS.gene06693:intron |
| GGTCTCTGAGGTTGTACAGA+AGG | 0.570648 | 3.3:-76463132 | None:intergenic |
| TGAGGTTGTACAGAAGGTGA+TGG | 0.570930 | 3.3:-76463126 | None:intergenic |
| TGTGAGGTTGGCACCAACCA+TGG | 0.575403 | 3.3:-76462802 | None:intergenic |
| AATTTCAGTTGGGGAGACCA+TGG | 0.584719 | 3.3:+76462785 | MS.gene06693:intron |
| ATGGTGGAAGTGAATGAAAA+GGG | 0.586184 | 3.3:-76463159 | None:intergenic |
| GAGTGGCCTCACTTTAGGAA+TGG | 0.598543 | 3.3:+76462864 | MS.gene06693:CDS |
| TCTGTACAACCTCAGAGACC+TGG | 0.603024 | 3.3:+76463135 | MS.gene06693:CDS |
| GCTATTTGATGATAGCCTCA+AGG | 0.604986 | 3.3:+76460895 | MS.gene06693:CDS |
| TAAATCTTTCTTGGGCATGG+TGG | 0.605827 | 3.3:-76463175 | None:intergenic |
| TAAAAGCAAACGTCTCCTGA+AGG | 0.607398 | 3.3:+76463914 | MS.gene06693:CDS |
| TGAAGGCCTTATTAAGCAGA+CGG | 0.609310 | 3.3:+76463931 | MS.gene06693:CDS |
| GAGATACCATTCCTAAAGTG+AGG | 0.609896 | 3.3:-76462870 | None:intergenic |
| AAGGGTTTGCAGATCACGGG+GGG | 0.624565 | 3.3:+76462625 | MS.gene06693:CDS |
| GCCTTGATGACGAAGATGAG+TGG | 0.627348 | 3.3:+76462847 | MS.gene06693:CDS |
| CACCAACATCTACAACAACA+AGG | 0.628642 | 3.3:+76463005 | MS.gene06693:CDS |
| CAGAGTCGTAGAAACACTGA+AGG | 0.629192 | 3.3:+76461248 | MS.gene06693:intron |
| GAATGACTTGTTGGACGAGA+AGG | 0.642436 | 3.3:+76461332 | MS.gene06693:CDS |
| AGAGAATGAGGAGTTACCAA+GGG | 0.644511 | 3.3:+76462607 | MS.gene06693:intron |
| GAGATCCAGTACGCAGAAGT+GGG | 0.648754 | 3.3:-76463618 | None:intergenic |
| GAAAAGGGTCCAGGTCTCTG+AGG | 0.654241 | 3.3:-76463144 | None:intergenic |
| TAGAGAATGAGGAGTTACCA+AGG | 0.667769 | 3.3:+76462606 | MS.gene06693:intron |
| AGGTTGTACAGAAGGTGATG+GGG | 0.679715 | 3.3:-76463124 | None:intergenic |
| CAAGGGTTTGCAGATCACGG+GGG | 0.681301 | 3.3:+76462624 | MS.gene06693:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTGAAATCAAAATATTA+TGG | - | chr3.3:76462904-76462923 | None:intergenic | 15.0% |
| !! | TTGCAATTATTTATGAAAAA+AGG | + | chr3.3:76462084-76462103 | MS.gene06693:intron | 15.0% |
| !!! | AACATAAGATTTTATATAGT+AGG | - | chr3.3:76462935-76462954 | None:intergenic | 15.0% |
| !!! | TCTTGATTTTGTTATTATTT+TGG | + | chr3.3:76463085-76463104 | MS.gene06693:intron | 15.0% |
| !!! | TGGTTGTTTTATAAAAATAT+TGG | + | chr3.3:76463309-76463328 | MS.gene06693:intron | 15.0% |
| !!! | TGTTTTATAAAAATATTGGA+TGG | + | chr3.3:76463313-76463332 | MS.gene06693:intron | 15.0% |
| !! | AAAAAAAATCAAAATCTGCT+TGG | - | chr3.3:76463347-76463366 | None:intergenic | 20.0% |
| !! | AAGAAAACACTAATAAGTAA+TGG | - | chr3.3:76463470-76463489 | None:intergenic | 20.0% |
| !! | AAGATAGAATAAGAAAACAA+GGG | - | chr3.3:76461221-76461240 | None:intergenic | 20.0% |
| !! | ACTCTTTATATAATTTCAGT+TGG | + | chr3.3:76462774-76462793 | MS.gene06693:intron | 20.0% |
| !! | ATTATATTATGGGATTAAGT+TGG | + | chr3.3:76463044-76463063 | MS.gene06693:intron | 20.0% |
| !! | CTCTTTATATAATTTCAGTT+GGG | + | chr3.3:76462775-76462794 | MS.gene06693:intron | 20.0% |
| !! | GTTTGAATTCTTTATTATCT+TGG | + | chr3.3:76462529-76462548 | MS.gene06693:intron | 20.0% |
| !! | TAAGATAGAATAAGAAAACA+AGG | - | chr3.3:76461222-76461241 | None:intergenic | 20.0% |
| !! | TAATTGCAAAGAAGAATAAT+TGG | + | chr3.3:76461450-76461469 | MS.gene06693:intron | 20.0% |
| !! | TCTTTATATAATTTCAGTTG+GGG | + | chr3.3:76462776-76462795 | MS.gene06693:intron | 20.0% |
| !! | TTACATGTATTGAAGATAAA+CGG | + | chr3.3:76463575-76463594 | MS.gene06693:intron | 20.0% |
| !!! | ATTGATTTGGTTATTACTTA+TGG | + | chr3.3:76463237-76463256 | MS.gene06693:intron | 20.0% |
| ! | AAATGTGGAGTAAATCAATA+TGG | - | chr3.3:76463493-76463512 | None:intergenic | 25.0% |
| ! | AACTTCAACAATTTCAAGAA+AGG | - | chr3.3:76462512-76462531 | None:intergenic | 25.0% |
| ! | ACAAATGCTGCATTATATTA+TGG | + | chr3.3:76463033-76463052 | MS.gene06693:intron | 25.0% |
| ! | ACTTCAACAATTTCAAGAAA+GGG | - | chr3.3:76462511-76462530 | None:intergenic | 25.0% |
| ! | ATAATATCCTTATTGCTTTG+AGG | + | chr3.3:76461536-76461555 | MS.gene06693:intron | 25.0% |
| ! | ATCCTTCTAATACAAAACAA+AGG | + | chr3.3:76463713-76463732 | MS.gene06693:CDS | 25.0% |
| ! | CAAATGCTGCATTATATTAT+GGG | + | chr3.3:76463034-76463053 | MS.gene06693:intron | 25.0% |
| ! | CATATAAACCTCATCAAAAT+TGG | - | chr3.3:76460864-76460883 | None:intergenic | 25.0% |
| ! | CTAAAAAGATTTAGGTACTT+AGG | - | chr3.3:76461999-76462018 | None:intergenic | 25.0% |
| ! | GAAGTTATTGCTCATATATT+TGG | + | chr3.3:76462283-76462302 | MS.gene06693:intron | 25.0% |
| ! | TCACTCAAAATCAATAACTA+AGG | - | chr3.3:76462374-76462393 | None:intergenic | 25.0% |
| ! | TCCTTCTAATACAAAACAAA+GGG | + | chr3.3:76463714-76463733 | MS.gene06693:CDS | 25.0% |
| ! | TTGGTTATTACTTATGGATT+TGG | + | chr3.3:76463243-76463262 | MS.gene06693:intron | 25.0% |
| !! | CAACATTTATTTCTTGAGAT+AGG | + | chr3.3:76461511-76461530 | MS.gene06693:intron | 25.0% |
| !! | TGTTTTGTATTAGAAGGATT+TGG | - | chr3.3:76463712-76463731 | None:intergenic | 25.0% |
| !!! | ACACTAATAAGTAATGGATT+TGG | - | chr3.3:76463464-76463483 | None:intergenic | 25.0% |
| !!! | CATATGTTTCACTACTTTTT+TGG | + | chr3.3:76460920-76460939 | MS.gene06693:intron | 25.0% |
| !!! | TATTATTTTGGTGCAGTAAA+GGG | + | chr3.3:76463097-76463116 | MS.gene06693:intron | 25.0% |
| !!! | TTATTATTTTGGTGCAGTAA+AGG | + | chr3.3:76463096-76463115 | MS.gene06693:intron | 25.0% |
| !!! | TTTCTGTCATTTTCACATAA+AGG | + | chr3.3:76463510-76463529 | MS.gene06693:intron | 25.0% |
| AAAATACCAAGCTTGAAATC+TGG | + | chr3.3:76463376-76463395 | MS.gene06693:intron | 30.0% | |
| AAATCATGCTTCGAATTGAA+TGG | - | chr3.3:76462460-76462479 | None:intergenic | 30.0% | |
| AACCAAATCAATGAACTTCT+GGG | - | chr3.3:76463229-76463248 | None:intergenic | 30.0% | |
| AAGAAAATGTTATACATGCC+TGG | - | chr3.3:76462708-76462727 | None:intergenic | 30.0% | |
| ATCAGTATCTCAAAGCAATA+AGG | - | chr3.3:76461887-76461906 | None:intergenic | 30.0% | |
| ATGTGAAAATGACAGAAATG+TGG | - | chr3.3:76463508-76463527 | None:intergenic | 30.0% | |
| ATTAGACTATGATCTTAACG+GGG | - | chr3.3:76460965-76460984 | None:intergenic | 30.0% | |
| CAACAAGTCATTCACTTTAT+AGG | - | chr3.3:76461325-76461344 | None:intergenic | 30.0% | |
| CATTAGACTATGATCTTAAC+GGG | - | chr3.3:76460966-76460985 | None:intergenic | 30.0% | |
| GCATTAGACTATGATCTTAA+CGG | - | chr3.3:76460967-76460986 | None:intergenic | 30.0% | |
| GCTAAGCACTAAAAAGATTT+AGG | - | chr3.3:76462007-76462026 | None:intergenic | 30.0% | |
| TAAAATCCACACAAATACCA+GGG | - | chr3.3:76462410-76462429 | None:intergenic | 30.0% | |
| TAACCAAATCAATGAACTTC+TGG | - | chr3.3:76463230-76463249 | None:intergenic | 30.0% | |
| TAAGCATACAACCATGATTA+AGG | - | chr3.3:76463747-76463766 | None:intergenic | 30.0% | |
| TACAGACCTAAATCTTTCTT+GGG | - | chr3.3:76463186-76463205 | None:intergenic | 30.0% | |
| TATAGAGAATATCACAGCAT+TGG | - | chr3.3:76461198-76461217 | None:intergenic | 30.0% | |
| TCACAGAACATCTTTACTTT+CGG | + | chr3.3:76462130-76462149 | MS.gene06693:intron | 30.0% | |
| TGACACACTTTATACATACT+TGG | + | chr3.3:76463968-76463987 | MS.gene06693:CDS | 30.0% | |
| TTAAAATCCACACAAATACC+AGG | - | chr3.3:76462411-76462430 | None:intergenic | 30.0% | |
| TTGATTTACTGCACTTTATC+TGG | - | chr3.3:76461421-76461440 | None:intergenic | 30.0% | |
| ! | AAATCATCGACATGACTTTT+AGG | + | chr3.3:76461829-76461848 | MS.gene06693:intron | 30.0% |
| ! | CTATAAAGTGAATGACTTGT+TGG | + | chr3.3:76461323-76461342 | MS.gene06693:CDS | 30.0% |
| ! | TGTATTTACAAGAGCTTTGA+TGG | - | chr3.3:76461280-76461299 | None:intergenic | 30.0% |
| !! | AAAAGCATTTCATTTCTAGC+TGG | + | chr3.3:76461590-76461609 | MS.gene06693:intron | 30.0% |
| !! | GACATTGTTTTTCCTTAATG+TGG | + | chr3.3:76462578-76462597 | MS.gene06693:intron | 30.0% |
| !! | TATGGGATTAAGTTGGTTAA+TGG | + | chr3.3:76463051-76463070 | MS.gene06693:intron | 30.0% |
| !!! | ACCCTTTGTTTTGTATTAGA+AGG | - | chr3.3:76463718-76463737 | None:intergenic | 30.0% |
| ACCAAATCAATGAACTTCTG+GGG | - | chr3.3:76463228-76463247 | None:intergenic | 35.0% | |
| ACGTGTATCTTGTATTGAAC+AGG | + | chr3.3:76461380-76461399 | MS.gene06693:CDS | 35.0% | |
| AGTGAAACATATGTACCTTG+AGG | - | chr3.3:76460913-76460932 | None:intergenic | 35.0% | |
| ATATTTCGACTTTGTGAGGT+TGG | - | chr3.3:76462817-76462836 | None:intergenic | 35.0% | |
| ATCAGCTTCAATGCGATTAT+CGG | + | chr3.3:76463851-76463870 | MS.gene06693:CDS | 35.0% | |
| ATTTACTGCACTTTATCTGG+AGG | - | chr3.3:76461418-76461437 | None:intergenic | 35.0% | |
| CCTTTCAATAACTGTATCCT+CGG | + | chr3.3:76462319-76462338 | MS.gene06693:intron | 35.0% | |
| CTACATATTTCGACTTTGTG+AGG | - | chr3.3:76462821-76462840 | None:intergenic | 35.0% | |
| CTCACAAAGTCGAAATATGT+AGG | + | chr3.3:76462819-76462838 | MS.gene06693:CDS | 35.0% | |
| GTAAATACAGTAGACCATCT+AGG | + | chr3.3:76461291-76461310 | MS.gene06693:CDS | 35.0% | |
| GTACAGACCTAAATCTTTCT+TGG | - | chr3.3:76463187-76463206 | None:intergenic | 35.0% | |
| GTAGTTGATCTGCTCATATT+TGG | - | chr3.3:76463664-76463683 | None:intergenic | 35.0% | |
| TATGATCTTTCATACTTCCG+AGG | - | chr3.3:76462339-76462358 | None:intergenic | 35.0% | |
| TTCTCTAGTGTACCACATTA+AGG | - | chr3.3:76462593-76462612 | None:intergenic | 35.0% | |
| TTGGAAGCTTCTTGAGAAAA+AGG | - | chr3.3:76460845-76460864 | None:intergenic | 35.0% | |
| ! | AAATCATTGACGTGACTTGT+AGG | + | chr3.3:76461488-76461507 | MS.gene06693:intron | 35.0% |
| ! | ACGTAACGCTTGTGATATTT+TGG | - | chr3.3:76462681-76462700 | None:intergenic | 35.0% |
| ! | ATGGTGGAAGTGAATGAAAA+GGG | - | chr3.3:76463162-76463181 | None:intergenic | 35.0% |
| ! | TAGCAACTCACATCTGTTTT+TGG | - | chr3.3:76461143-76461162 | None:intergenic | 35.0% |
| ! | TTATCGGCTGAAAGAGATAA+TGG | + | chr3.3:76463867-76463886 | MS.gene06693:CDS | 35.0% |
| !! | AGAAGCTTCCAATTTTGATG+AGG | + | chr3.3:76460853-76460872 | MS.gene06693:CDS | 35.0% |
| !! | AGTAATGGATTTGGATTGTC+TGG | - | chr3.3:76463455-76463474 | None:intergenic | 35.0% |
| !! | ATATCACAGCATTGGCAAAT+AGG | - | chr3.3:76461190-76461209 | None:intergenic | 35.0% |
| !! | TACCTTGTTGTTGTAGATGT+TGG | - | chr3.3:76463010-76463029 | None:intergenic | 35.0% |
| !! | TTAGAAGGATTTGGTGTGAT+TGG | - | chr3.3:76463703-76463722 | None:intergenic | 35.0% |
| ACAATACCCTGGTATTTGTG+TGG | + | chr3.3:76462401-76462420 | MS.gene06693:intron | 40.0% | |
| ACCAGTACCTCAAAGCAATA+AGG | - | chr3.3:76461546-76461565 | None:intergenic | 40.0% | |
| ACCATGCCCAAGAAAGATTT+AGG | + | chr3.3:76463177-76463196 | MS.gene06693:CDS | 40.0% | |
| ACCTAAATCTTTCTTGGGCA+TGG | - | chr3.3:76463181-76463200 | None:intergenic | 40.0% | |
| ACTGATCACCAATGACTGTT+GGG | - | chr3.3:76462655-76462674 | None:intergenic | 40.0% | |
| AGACTTCCGTCTGCTTAATA+AGG | - | chr3.3:76463940-76463959 | None:intergenic | 40.0% | |
| AGAGAATGAGGAGTTACCAA+GGG | + | chr3.3:76462607-76462626 | MS.gene06693:intron | 40.0% | |
| AGGGTAAGTGACCTTAATCA+TGG | + | chr3.3:76463733-76463752 | MS.gene06693:intron | 40.0% | |
| AGTTGGTTAATGGCTCAATG+AGG | + | chr3.3:76463061-76463080 | MS.gene06693:intron | 40.0% | |
| ATGTGGTACACTAGAGAATG+AGG | + | chr3.3:76462595-76462614 | MS.gene06693:intron | 40.0% | |
| CACCAACATCTACAACAACA+AGG | + | chr3.3:76463005-76463024 | MS.gene06693:CDS | 40.0% | |
| CATTTATGCAGTCAGCACTT+TGG | + | chr3.3:76463286-76463305 | MS.gene06693:intron | 40.0% | |
| CCGAGGATACAGTTATTGAA+AGG | - | chr3.3:76462322-76462341 | None:intergenic | 40.0% | |
| GAAGCTTCTTGAGAAAAAGG+CGG | - | chr3.3:76460842-76460861 | None:intergenic | 40.0% | |
| GAGAAGGTTGTTGAAGTTTC+TGG | + | chr3.3:76461348-76461367 | MS.gene06693:CDS | 40.0% | |
| GAGATACCATTCCTAAAGTG+AGG | - | chr3.3:76462873-76462892 | None:intergenic | 40.0% | |
| GGACTCAAATGTTGATCCAA+TGG | + | chr3.3:76463397-76463416 | MS.gene06693:intron | 40.0% | |
| GTGAAAGTTCAACAATACCC+TGG | + | chr3.3:76462390-76462409 | MS.gene06693:intron | 40.0% | |
| TAAAAGCAAACGTCTCCTGA+AGG | + | chr3.3:76463914-76463933 | MS.gene06693:CDS | 40.0% | |
| TAAATCTTTCTTGGGCATGG+TGG | - | chr3.3:76463178-76463197 | None:intergenic | 40.0% | |
| TACTGATCACCAATGACTGT+TGG | - | chr3.3:76462656-76462675 | None:intergenic | 40.0% | |
| TAGAGAATGAGGAGTTACCA+AGG | + | chr3.3:76462606-76462625 | MS.gene06693:intron | 40.0% | |
| TATAGGTCACAGAACCTAGA+TGG | - | chr3.3:76461308-76461327 | None:intergenic | 40.0% | |
| TGTATGCTTACTCGACACAT+TGG | + | chr3.3:76463757-76463776 | MS.gene06693:intron | 40.0% | |
| TTGAGTCCAGATTTCAAGCT+TGG | - | chr3.3:76463385-76463404 | None:intergenic | 40.0% | |
| TTGTCTGGTCACAAATCTCA+CGG | - | chr3.3:76463440-76463459 | None:intergenic | 40.0% | |
| ! | AACTTTTCATCTGTTCGCGT+AGG | + | chr3.3:76461047-76461066 | MS.gene06693:intron | 40.0% |
| ! | ACCCCAGAAGTTCATTGATT+TGG | + | chr3.3:76463224-76463243 | MS.gene06693:intron | 40.0% |
| ! | ATGATTTTGCAACTGCAGCT+GGG | + | chr3.3:76462473-76462492 | MS.gene06693:intron | 40.0% |
| ! | CATGGTGGAAGTGAATGAAA+AGG | - | chr3.3:76463163-76463182 | None:intergenic | 40.0% |
| ! | GCTATTTGATGATAGCCTCA+AGG | + | chr3.3:76460895-76460914 | MS.gene06693:CDS | 40.0% |
| !! | AGGAGACGTTTGCTTTTACT+CGG | - | chr3.3:76463912-76463931 | None:intergenic | 40.0% |
| !! | TCCTTATTGCTTTGAGGTAC+TGG | + | chr3.3:76461542-76461561 | MS.gene06693:intron | 40.0% |
| !! | TCTGCTCATATTTGGTGTTG+TGG | - | chr3.3:76463656-76463675 | None:intergenic | 40.0% |
| !! | TGAAGGCCTTATTAAGCAGA+CGG | + | chr3.3:76463931-76463950 | MS.gene06693:CDS | 40.0% |
| !!! | CATCTGTTTTTGGTCGTCAT+TGG | - | chr3.3:76461133-76461152 | None:intergenic | 40.0% |
| AAGATGAGTGGCCTCACTTT+AGG | + | chr3.3:76462859-76462878 | MS.gene06693:CDS | 45.0% | |
| AAGCAGACGGAAGTCTAAGA+AGG | + | chr3.3:76463944-76463963 | MS.gene06693:CDS | 45.0% | |
| AATTGCAGCTCGAACAGCTT+TGG | - | chr3.3:76462978-76462997 | None:intergenic | 45.0% | |
| AATTTCAGTTGGGGAGACCA+TGG | + | chr3.3:76462785-76462804 | MS.gene06693:intron | 45.0% | |
| AGGTTGTACAGAAGGTGATG+GGG | - | chr3.3:76463127-76463146 | None:intergenic | 45.0% | |
| ATTGCAGCTCGAACAGCTTT+GGG | - | chr3.3:76462977-76462996 | None:intergenic | 45.0% | |
| CAGAGTCGTAGAAACACTGA+AGG | + | chr3.3:76461248-76461267 | MS.gene06693:intron | 45.0% | |
| GAAGTGAATGAAAAGGGTCC+AGG | - | chr3.3:76463156-76463175 | None:intergenic | 45.0% | |
| GAGGTTGTACAGAAGGTGAT+GGG | - | chr3.3:76463128-76463147 | None:intergenic | 45.0% | |
| GTCAACGCATTTGTGACCAT+TGG | - | chr3.3:76463416-76463435 | None:intergenic | 45.0% | |
| GTCTGCTTAATAAGGCCTTC+AGG | - | chr3.3:76463932-76463951 | None:intergenic | 45.0% | |
| GTGAGTTGCTATGCTAAAGC+TGG | + | chr3.3:76461152-76461171 | MS.gene06693:intron | 45.0% | |
| TACCAAGGGTTTGCAGATCA+CGG | + | chr3.3:76462621-76462640 | MS.gene06693:CDS | 45.0% | |
| TGAGGTTGTACAGAAGGTGA+TGG | - | chr3.3:76463129-76463148 | None:intergenic | 45.0% | |
| TTATGCAGTCAGCACTTTGG+TGG | + | chr3.3:76463289-76463308 | MS.gene06693:intron | 45.0% | |
| ! | CATGATTTTGCAACTGCAGC+TGG | + | chr3.3:76462472-76462491 | MS.gene06693:intron | 45.0% |
| ! | CTGATTTTCGTGGCTCAGAA+GGG | - | chr3.3:76463836-76463855 | None:intergenic | 45.0% |
| !! | CGCATTGAAGCTGATTTTCG+TGG | - | chr3.3:76463846-76463865 | None:intergenic | 45.0% |
| !! | GAATGACTTGTTGGACGAGA+AGG | + | chr3.3:76461332-76461351 | MS.gene06693:CDS | 45.0% |
| !! | GGAGACGTTTGCTTTTACTC+GGG | - | chr3.3:76463911-76463930 | None:intergenic | 45.0% |
| !! | TTTGGTGTGATTGGTCTGCT+TGG | - | chr3.3:76463694-76463713 | None:intergenic | 45.0% |
| !!! | GTGATTGGTCTGCTTGGTTT+TGG | - | chr3.3:76463688-76463707 | None:intergenic | 45.0% |
| AACGGTCAGTTTCACCGTAC+CGG | + | chr3.3:76463593-76463612 | MS.gene06693:CDS | 50.0% | |
| ACCAAGGGTTTGCAGATCAC+GGG | + | chr3.3:76462622-76462641 | MS.gene06693:CDS | 50.0% | |
| CACTTCTGCGTACTGGATCT+CGG | + | chr3.3:76463620-76463639 | MS.gene06693:CDS | 50.0% | |
| GAGATCCAGTACGCAGAAGT+GGG | - | chr3.3:76463621-76463640 | None:intergenic | 50.0% | |
| GCCACTCATCTTCGTCATCA+AGG | - | chr3.3:76462851-76462870 | None:intergenic | 50.0% | |
| TCTGTACAACCTCAGAGACC+TGG | + | chr3.3:76463135-76463154 | MS.gene06693:CDS | 50.0% | |
| ! | GAGTGGCCTCACTTTAGGAA+TGG | + | chr3.3:76462864-76462883 | MS.gene06693:CDS | 50.0% |
| !! | GCCTTGATGACGAAGATGAG+TGG | + | chr3.3:76462847-76462866 | MS.gene06693:CDS | 50.0% |
| !! | GCTGATTTTCGTGGCTCAGA+AGG | - | chr3.3:76463837-76463856 | None:intergenic | 50.0% |
| !! | GGTCTCTGAGGTTGTACAGA+AGG | - | chr3.3:76463135-76463154 | None:intergenic | 50.0% |
| AAGGGTTTGCAGATCACGGG+GGG | + | chr3.3:76462625-76462644 | MS.gene06693:CDS | 55.0% | |
| CAAGGGTTTGCAGATCACGG+GGG | + | chr3.3:76462624-76462643 | MS.gene06693:CDS | 55.0% | |
| CACAAGCGTTACGTCTTGCC+AGG | + | chr3.3:76462687-76462706 | MS.gene06693:CDS | 55.0% | |
| CAGTACGCAGAAGTGGGAAC+CGG | - | chr3.3:76463615-76463634 | None:intergenic | 55.0% | |
| CCAAGGGTTTGCAGATCACG+GGG | + | chr3.3:76462623-76462642 | MS.gene06693:CDS | 55.0% | |
| CGAGATCCAGTACGCAGAAG+TGG | - | chr3.3:76463622-76463641 | None:intergenic | 55.0% | |
| GAAAAGGGTCCAGGTCTCTG+AGG | - | chr3.3:76463147-76463166 | None:intergenic | 55.0% | |
| TCAGTTGGGGAGACCATGGT+TGG | + | chr3.3:76462789-76462808 | MS.gene06693:intron | 55.0% | |
| TGTGAGGTTGGCACCAACCA+TGG | - | chr3.3:76462805-76462824 | None:intergenic | 55.0% | |
| ! | TTCGTGGCTCAGAAGGGTAC+TGG | - | chr3.3:76463830-76463849 | None:intergenic | 55.0% |
| !! | TGGCTCAGAAGGGTACTGGT+AGG | - | chr3.3:76463826-76463845 | None:intergenic | 55.0% |
| CCCCGTGATCTGCAAACCCT+TGG | - | chr3.3:76462626-76462645 | None:intergenic | 60.0% | |
| CGCAGAAGTGGGAACCGGTA+CGG | - | chr3.3:76463610-76463629 | None:intergenic | 60.0% | |
| CGGTTCCCACTTCTGCGTAC+TGG | + | chr3.3:76463613-76463632 | MS.gene06693:CDS | 60.0% | |
| ! | GGGGCGTTCCCAACAGTCAT+TGG | + | chr3.3:76462644-76462663 | MS.gene06693:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76460812 | 76464001 | 76460812 | ID=MS.gene06693 |
| chr3.3 | mRNA | 76460812 | 76464001 | 76460812 | ID=MS.gene06693.t1;Parent=MS.gene06693 |
| chr3.3 | exon | 76460812 | 76460916 | 76460812 | ID=MS.gene06693.t1.exon1;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76460812 | 76460916 | 76460812 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| chr3.3 | exon | 76461069 | 76461151 | 76461069 | ID=MS.gene06693.t1.exon2;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76461069 | 76461151 | 76461069 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| chr3.3 | exon | 76461251 | 76461401 | 76461251 | ID=MS.gene06693.t1.exon3;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76461251 | 76461401 | 76461251 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| chr3.3 | exon | 76462609 | 76462708 | 76462609 | ID=MS.gene06693.t1.exon4;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76462609 | 76462708 | 76462609 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| chr3.3 | exon | 76462793 | 76462885 | 76462793 | ID=MS.gene06693.t1.exon5;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76462793 | 76462885 | 76462793 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| chr3.3 | exon | 76462981 | 76463026 | 76462981 | ID=MS.gene06693.t1.exon6;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76462981 | 76463026 | 76462981 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| chr3.3 | exon | 76463113 | 76463198 | 76463113 | ID=MS.gene06693.t1.exon7;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76463113 | 76463198 | 76463113 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| chr3.3 | exon | 76463590 | 76463735 | 76463590 | ID=MS.gene06693.t1.exon8;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76463590 | 76463735 | 76463590 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| chr3.3 | exon | 76463831 | 76464001 | 76463831 | ID=MS.gene06693.t1.exon9;Parent=MS.gene06693.t1 |
| chr3.3 | CDS | 76463831 | 76464001 | 76463831 | ID=cds.MS.gene06693.t1;Parent=MS.gene06693.t1 |
| Gene Sequence |
| Protein sequence |
