Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013576.t1 | XP_003602276.1 | 99.1 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 1.20E-139 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013576.t1 | Q9M3A3 | 66.2 | 325 | 87 | 4 | 11 | 326 | 2 | 312 | 4.0e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013576.t1 | G7J7G6 | 99.1 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 8.5e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31641 | MS.gene013576 | PPI |
| MS.gene98197 | MS.gene013576 | PPI |
| MS.gene021449 | MS.gene013576 | PPI |
| MS.gene013576 | MS.gene06902 | PPI |
| MS.gene54480 | MS.gene013576 | PPI |
| MS.gene057119 | MS.gene013576 | PPI |
| MS.gene013576 | MS.gene024488 | PPI |
| MS.gene059163 | MS.gene013576 | PPI |
| MS.gene06693 | MS.gene013576 | PPI |
| MS.gene92121 | MS.gene013576 | PPI |
| MS.gene059164 | MS.gene013576 | PPI |
| MS.gene22839 | MS.gene013576 | PPI |
| MS.gene013576 | MS.gene050599 | PPI |
| MS.gene79701 | MS.gene013576 | PPI |
| MS.gene019711 | MS.gene013576 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013576.t1 | MTR_3g091760 | 98.773 | 326 | 4 | 0 | 1 | 326 | 1 | 326 | 0.0 | 662 |
| MS.gene013576.t1 | MTR_1g007880 | 74.924 | 327 | 77 | 3 | 1 | 326 | 1 | 323 | 2.14e-179 | 499 |
| MS.gene013576.t1 | MTR_1g007880 | 74.924 | 327 | 77 | 3 | 1 | 326 | 20 | 342 | 8.97e-179 | 498 |
| MS.gene013576.t1 | MTR_3g091760 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 5.07e-164 | 457 |
| MS.gene013576.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 3.27e-42 | 145 |
| MS.gene013576.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 1.47e-41 | 144 |
| MS.gene013576.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 2.21e-41 | 146 |
| MS.gene013576.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 5.51e-41 | 145 |
| MS.gene013576.t1 | MTR_7g116710 | 48.413 | 126 | 65 | 0 | 21 | 146 | 2 | 127 | 1.38e-35 | 130 |
| MS.gene013576.t1 | MTR_6g087680 | 33.058 | 121 | 80 | 1 | 24 | 144 | 19 | 138 | 1.51e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013576.t1 | AT3G49290 | 69.811 | 318 | 87 | 4 | 11 | 326 | 2 | 312 | 1.16e-152 | 431 |
| MS.gene013576.t1 | AT3G49290 | 69.811 | 318 | 87 | 4 | 11 | 326 | 2 | 312 | 1.16e-152 | 431 |
| MS.gene013576.t1 | AT5G24310 | 67.674 | 331 | 89 | 7 | 4 | 326 | 1 | 321 | 9.52e-148 | 419 |
| MS.gene013576.t1 | AT5G24310 | 68.827 | 324 | 83 | 7 | 11 | 326 | 2 | 315 | 1.43e-146 | 416 |
| MS.gene013576.t1 | AT5G24310 | 65.257 | 331 | 83 | 8 | 4 | 326 | 1 | 307 | 3.64e-137 | 391 |
| MS.gene013576.t1 | AT5G24310 | 69.820 | 222 | 57 | 4 | 11 | 226 | 2 | 219 | 3.37e-100 | 295 |
| MS.gene013576.t1 | AT5G42030 | 41.176 | 255 | 121 | 4 | 14 | 261 | 12 | 244 | 6.94e-55 | 181 |
| MS.gene013576.t1 | AT5G42030 | 38.868 | 265 | 129 | 4 | 14 | 274 | 12 | 247 | 4.46e-52 | 174 |
| MS.gene013576.t1 | AT5G42030 | 45.349 | 172 | 82 | 1 | 14 | 185 | 12 | 171 | 1.55e-43 | 149 |
| MS.gene013576.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 1.37e-36 | 133 |
| MS.gene013576.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 1.40e-36 | 133 |
| MS.gene013576.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 2.34e-36 | 134 |
| MS.gene013576.t1 | AT5G42030 | 37.073 | 205 | 100 | 4 | 64 | 261 | 15 | 197 | 9.62e-31 | 116 |
Find 75 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGGTTGTTGAAGTTTC+TGG | 0.180748 | 3.4:+83883308 | MS.gene013576:CDS |
| ACGTAACGCTTGTGATATTT+TGG | 0.201872 | 3.4:-83884870 | None:intergenic |
| CATATAAACCTCATCAAAAT+TGG | 0.228895 | 3.4:-83882820 | None:intergenic |
| TTGGAAGCTTCTTGAGAAAA+AGG | 0.270340 | 3.4:-83882801 | None:intergenic |
| CAACAAGTCATTCACTTTAT+AGG | 0.272088 | 3.4:-83883282 | None:intergenic |
| ACCATGCCCAAGAAAGATTT+AGG | 0.273060 | 3.4:+83885369 | MS.gene013576:CDS |
| AGACTTCCGTCTGCTTAATA+AGG | 0.282251 | 3.4:-83886134 | None:intergenic |
| GTAAATACAGTGGACCATTT+AGG | 0.283672 | 3.4:+83883251 | MS.gene013576:CDS |
| TGTATTTACAAGAGCTTTGA+TGG | 0.284393 | 3.4:-83883237 | None:intergenic |
| GTGATTGGTCTGCTTGGTTT+TGG | 0.288333 | 3.4:-83885884 | None:intergenic |
| GTAGTTGATCTACTCATATT+TGG | 0.295638 | 3.4:-83885860 | None:intergenic |
| CTACTCATATTTGGTGTTGT+AGG | 0.312359 | 3.4:-83885851 | None:intergenic |
| GTACAAACCTAAATCTTTCT+TGG | 0.326997 | 3.4:-83885376 | None:intergenic |
| AAGATGAGTGGCCTCACTTT+AGG | 0.348049 | 3.4:+83885051 | MS.gene013576:CDS |
| CGGTTCCCACTTCTGCGTAC+TGG | 0.387838 | 3.4:+83885812 | MS.gene013576:CDS |
| TATAGGTCACAGAACCTAAA+TGG | 0.401928 | 3.4:-83883265 | None:intergenic |
| TTAGAAGGATTTGGTGTGAT+TGG | 0.416608 | 3.4:-83885899 | None:intergenic |
| TTACATGTATTGAAGATAAA+CGG | 0.433228 | 3.4:+83885774 | MS.gene013576:intron |
| GTCTGCTTAATAAGGCCTTC+AGG | 0.434013 | 3.4:-83886126 | None:intergenic |
| CTATAAAGTGAATGACTTGT+TGG | 0.437398 | 3.4:+83883283 | MS.gene013576:CDS |
| ACGTGTATCTTGTATTGAAC+AGG | 0.439316 | 3.4:+83883340 | MS.gene013576:CDS |
| ACCAAGGGTTTGCAGATCAC+GGG | 0.440461 | 3.4:+83884814 | MS.gene013576:CDS |
| TTATCAGCTGAAAGAGATAA+TGG | 0.442089 | 3.4:+83886064 | MS.gene013576:CDS |
| TACAAACCTAAATCTTTCTT+GGG | 0.447971 | 3.4:-83885375 | None:intergenic |
| TACCTTGTTGTTGTAGATGT+TGG | 0.456352 | 3.4:-83885199 | None:intergenic |
| TACTGATCACCAATGACTGC+TGG | 0.458622 | 3.4:-83884845 | None:intergenic |
| CACTTCTGCGTACTGGATCT+CGG | 0.467564 | 3.4:+83885819 | MS.gene013576:CDS |
| TTTGGTGTGATTGGTCTGCT+TGG | 0.467620 | 3.4:-83885890 | None:intergenic |
| GCTGATTTGCGTGGCTCAGA+AGG | 0.467862 | 3.4:-83886031 | None:intergenic |
| TGACACACTTTATACATACT+TGG | 0.470816 | 3.4:+83886165 | MS.gene013576:CDS |
| GGGGCGTTCCCAGCAGTCAT+TGG | 0.471750 | 3.4:+83884836 | MS.gene013576:CDS |
| ACCTAAATCTTTCTTGGGCA+TGG | 0.482032 | 3.4:-83885370 | None:intergenic |
| GCCACTCATCTTCGTCATCA+AGG | 0.483644 | 3.4:-83885040 | None:intergenic |
| CGCAGAAGTGGGAACCGATA+CGG | 0.488896 | 3.4:-83885806 | None:intergenic |
| TACCAAGGGTTTGCAGATCA+CGG | 0.499084 | 3.4:+83884813 | MS.gene013576:CDS |
| CACAAGCGTTACGTCTTGCC+AGG | 0.503666 | 3.4:+83884879 | MS.gene013576:CDS |
| AACGGTCAGTTTCACCGTAT+CGG | 0.509848 | 3.4:+83885792 | MS.gene013576:CDS |
| CCCCGTGATCTGCAAACCCT+TGG | 0.511606 | 3.4:-83884815 | None:intergenic |
| TTTACTTTCATTCATGGGGA+AGG | 0.513085 | 3.4:+83882758 | None:intergenic |
| GAGGTTGTACAGAAGGTGAT+GGG | 0.517973 | 3.4:-83885317 | None:intergenic |
| GAAGTGAATGAAAAGGGTCC+AGG | 0.526656 | 3.4:-83885345 | None:intergenic |
| ATGTGGTACATTAGAGAATG+AGG | 0.550956 | 3.4:+83884787 | MS.gene013576:intron |
| CGAGATCCAGTACGCAGAAG+TGG | 0.551353 | 3.4:-83885818 | None:intergenic |
| CATGGTGGAAGTGAATGAAA+AGG | 0.555407 | 3.4:-83885352 | None:intergenic |
| AAGCAGACGGAAGTCTAAGA+AGG | 0.564557 | 3.4:+83886141 | MS.gene013576:CDS |
| TCAGTTGGGGAGACCATGGT+TGG | 0.565153 | 3.4:+83884981 | MS.gene013576:intron |
| CCAAGGGTTTGCAGATCACG+GGG | 0.566119 | 3.4:+83884815 | MS.gene013576:CDS |
| GGTCTCTGAGGTTGTACAGA+AGG | 0.570648 | 3.4:-83885324 | None:intergenic |
| TGAGGTTGTACAGAAGGTGA+TGG | 0.570930 | 3.4:-83885318 | None:intergenic |
| CTCACAAAGTCAAAATATGT+AGG | 0.572426 | 3.4:+83885011 | MS.gene013576:CDS |
| TGTGAGGTTGGCACCAACCA+TGG | 0.575403 | 3.4:-83884994 | None:intergenic |
| CAGAGTGGTAGAAACACTGA+AGG | 0.577569 | 3.4:+83883208 | MS.gene013576:intron |
| ACTGATCACCAATGACTGCT+GGG | 0.578104 | 3.4:-83884844 | None:intergenic |
| AATTTCAGTTGGGGAGACCA+TGG | 0.585476 | 3.4:+83884977 | MS.gene013576:intron |
| ATGGTGGAAGTGAATGAAAA+GGG | 0.586184 | 3.4:-83885351 | None:intergenic |
| GAATGACTTGTTGGATGAGA+AGG | 0.592937 | 3.4:+83883292 | MS.gene013576:CDS |
| CGCATTGAAGCTGATTTGCG+TGG | 0.595222 | 3.4:-83886040 | None:intergenic |
| GAGTGGCCTCACTTTAGGAA+TGG | 0.598543 | 3.4:+83885056 | MS.gene013576:CDS |
| TCTGTACAACCTCAGAGACC+TGG | 0.603024 | 3.4:+83885327 | MS.gene013576:CDS |
| TAAATCTTTCTTGGGCATGG+TGG | 0.605827 | 3.4:-83885367 | None:intergenic |
| TAAAAGCAAACGTCTCCTGA+AGG | 0.607398 | 3.4:+83886111 | MS.gene013576:CDS |
| AGAGAATGAGGAGTTACCAA+GGG | 0.608463 | 3.4:+83884799 | MS.gene013576:intron |
| TGAAGGCCTTATTAAGCAGA+CGG | 0.609310 | 3.4:+83886128 | MS.gene013576:CDS |
| GAGATACCATTCCTAAAGTG+AGG | 0.609896 | 3.4:-83885062 | None:intergenic |
| GCTCTTTGATGATAGCCTCA+AGG | 0.611030 | 3.4:+83882854 | MS.gene013576:CDS |
| CTGATTTGCGTGGCTCAGAA+GGG | 0.617785 | 3.4:-83886030 | None:intergenic |
| AAGGGTTTGCAGATCACGGG+GGG | 0.624565 | 3.4:+83884817 | MS.gene013576:CDS |
| GCCTTGATGACGAAGATGAG+TGG | 0.627348 | 3.4:+83885039 | MS.gene013576:CDS |
| CACCAACATCTACAACAACA+AGG | 0.628642 | 3.4:+83885197 | MS.gene013576:CDS |
| CAAAGCTCTTGTAAATACAG+TGG | 0.639014 | 3.4:+83883241 | MS.gene013576:CDS |
| TAGAGAATGAGGAGTTACCA+AGG | 0.648940 | 3.4:+83884798 | MS.gene013576:intron |
| GAGATCCAGTACGCAGAAGT+GGG | 0.651362 | 3.4:-83885817 | None:intergenic |
| GAAAAGGGTCCAGGTCTCTG+AGG | 0.654241 | 3.4:-83885336 | None:intergenic |
| AGGTTGTACAGAAGGTGATG+GGG | 0.679715 | 3.4:-83885316 | None:intergenic |
| CAAGGGTTTGCAGATCACGG+GGG | 0.681301 | 3.4:+83884816 | MS.gene013576:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGCAATTATTTATGAAAAA+AGG | + | chr3.4:83884044-83884063 | MS.gene013576:intron | 15.0% |
| !!! | CACTTTTCTTTTTTAAATTA+CGG | + | chr3.4:83884267-83884286 | MS.gene013576:intron | 15.0% |
| !!! | TGGTTGTTTTATAAAAATAT+TGG | + | chr3.4:83885504-83885523 | MS.gene013576:intron | 15.0% |
| !!! | TGTTTTATAAAAATATTGGA+TGG | + | chr3.4:83885508-83885527 | MS.gene013576:intron | 15.0% |
| !! | AAAAAAAATCAAAATCTGCT+TGG | - | chr3.4:83885542-83885561 | None:intergenic | 20.0% |
| !! | AAGAAAACACTAATAAGTAA+TGG | - | chr3.4:83885668-83885687 | None:intergenic | 20.0% |
| !! | ATTATATTATGGGATTAAGT+TGG | + | chr3.4:83885236-83885255 | MS.gene013576:intron | 20.0% |
| !! | GTTTGAATTCTTTATTATCT+TGG | + | chr3.4:83884721-83884740 | MS.gene013576:intron | 20.0% |
| !! | TAAGTGACATCAAAATATTA+TGG | - | chr3.4:83885096-83885115 | None:intergenic | 20.0% |
| !! | TAATTGCAAAGATGAATAAT+TGG | + | chr3.4:83883410-83883429 | MS.gene013576:intron | 20.0% |
| !! | TTACATGTATTGAAGATAAA+CGG | + | chr3.4:83885774-83885793 | MS.gene013576:intron | 20.0% |
| !!! | AACATAAGATTTTCTATAGT+AGG | - | chr3.4:83885127-83885146 | None:intergenic | 20.0% |
| !!! | ATTGATTTGGTTATTACTTA+TGG | + | chr3.4:83885432-83885451 | MS.gene013576:intron | 20.0% |
| !!! | TATTATTTTGATGCAGTAAA+GGG | + | chr3.4:83885289-83885308 | MS.gene013576:intron | 20.0% |
| !!! | TTATTATTTTGATGCAGTAA+AGG | + | chr3.4:83885288-83885307 | MS.gene013576:intron | 20.0% |
| ! | AACTTCAACAATTTCAAGAA+AGG | - | chr3.4:83884704-83884723 | None:intergenic | 25.0% |
| ! | ACAAATGCTGCATTATATTA+TGG | + | chr3.4:83885225-83885244 | MS.gene013576:intron | 25.0% |
| ! | ACTAAAAAGATTTAGGTACT+TGG | - | chr3.4:83883960-83883979 | None:intergenic | 25.0% |
| ! | ACTCTTTACATAATTTCAGT+TGG | + | chr3.4:83884966-83884985 | MS.gene013576:intron | 25.0% |
| ! | ACTTCAACAATTTCAAGAAA+GGG | - | chr3.4:83884703-83884722 | None:intergenic | 25.0% |
| ! | CAAATGCTGCATTATATTAT+GGG | + | chr3.4:83885226-83885245 | MS.gene013576:intron | 25.0% |
| ! | CATATAAACCTCATCAAAAT+TGG | - | chr3.4:83882823-83882842 | None:intergenic | 25.0% |
| ! | CTAAAAAGATTTAGGTACTT+GGG | - | chr3.4:83883959-83883978 | None:intergenic | 25.0% |
| ! | CTCTTTACATAATTTCAGTT+GGG | + | chr3.4:83884967-83884986 | MS.gene013576:intron | 25.0% |
| ! | TACAAACCTAAATCTTTCTT+GGG | - | chr3.4:83885378-83885397 | None:intergenic | 25.0% |
| ! | TCACTCAAAATCAATAACTA+AGG | - | chr3.4:83884566-83884585 | None:intergenic | 25.0% |
| ! | TCTAGTCACAAATTTATTCA+TGG | + | chr3.4:83885467-83885486 | MS.gene013576:intron | 25.0% |
| ! | TCTTTACATAATTTCAGTTG+GGG | + | chr3.4:83884968-83884987 | MS.gene013576:intron | 25.0% |
| ! | TGAAGTTATTGCTCATAAAT+TGG | + | chr3.4:83884475-83884494 | MS.gene013576:intron | 25.0% |
| ! | TTGGTTATTACTTATGGATT+TGG | + | chr3.4:83885438-83885457 | MS.gene013576:intron | 25.0% |
| !! | AAGAAAATTTTATACATGCC+TGG | - | chr3.4:83884900-83884919 | None:intergenic | 25.0% |
| !! | CAACATTTATTTCTTGAGAT+AGG | + | chr3.4:83883471-83883490 | MS.gene013576:intron | 25.0% |
| !! | TGTTTTGTATTAGAAGGATT+TGG | - | chr3.4:83885911-83885930 | None:intergenic | 25.0% |
| !!! | ACACTAATAAGTAATGGATT+TGG | - | chr3.4:83885662-83885681 | None:intergenic | 25.0% |
| !!! | ACATATGTTTTGCTACTTTT+TGG | + | chr3.4:83882878-83882897 | MS.gene013576:intron | 25.0% |
| !!! | ACTCTTTGTTTTGTATTAGA+AGG | - | chr3.4:83885917-83885936 | None:intergenic | 25.0% |
| !!! | CATATGTTTTGCTACTTTTT+GGG | + | chr3.4:83882879-83882898 | MS.gene013576:intron | 25.0% |
| !!! | TTTCTGTCATTTTCACATAA+AGG | + | chr3.4:83885708-83885727 | MS.gene013576:intron | 25.0% |
| AAATCATGCTTCGAATTGAA+TGG | - | chr3.4:83884652-83884671 | None:intergenic | 30.0% | |
| AAATCATTGACATGACTTCT+AGG | + | chr3.4:83883448-83883467 | MS.gene013576:intron | 30.0% | |
| AAATGTGGAGGAAATCAATA+TGG | - | chr3.4:83885691-83885710 | None:intergenic | 30.0% | |
| AACCAAATCAATGAACTTCT+GGG | - | chr3.4:83885424-83885443 | None:intergenic | 30.0% | |
| AAGCATACAACCATGATTTA+AGG | - | chr3.4:83885946-83885965 | None:intergenic | 30.0% | |
| AAGTACAATGTTTGGATTGA+GGG | + | chr3.4:83884217-83884236 | MS.gene013576:intron | 30.0% | |
| AATAACTTCATACCACTCTA+AGG | - | chr3.4:83884465-83884484 | None:intergenic | 30.0% | |
| ATAACTTCATACCACTCTAA+GGG | - | chr3.4:83884464-83884483 | None:intergenic | 30.0% | |
| ATCAGTATCTCAAAGCAATA+AGG | - | chr3.4:83883847-83883866 | None:intergenic | 30.0% | |
| ATGATATCCTTATTGCTTTG+AGG | + | chr3.4:83883496-83883515 | MS.gene013576:intron | 30.0% | |
| ATGTGAAAATGACAGAAATG+TGG | - | chr3.4:83885706-83885725 | None:intergenic | 30.0% | |
| CAACAAGTCATTCACTTTAT+AGG | - | chr3.4:83883285-83883304 | None:intergenic | 30.0% | |
| CTCACAAAGTCAAAATATGT+AGG | + | chr3.4:83885011-83885030 | MS.gene013576:CDS | 30.0% | |
| GCTAAGCACTAAAAAGATTT+AGG | - | chr3.4:83883967-83883986 | None:intergenic | 30.0% | |
| GTACAAACCTAAATCTTTCT+TGG | - | chr3.4:83885379-83885398 | None:intergenic | 30.0% | |
| GTAGTTGATCTACTCATATT+TGG | - | chr3.4:83885863-83885882 | None:intergenic | 30.0% | |
| TAAAATCCACACAAATAGCA+GGG | - | chr3.4:83884602-83884621 | None:intergenic | 30.0% | |
| TAACCAAATCAATGAACTTC+TGG | - | chr3.4:83885425-83885444 | None:intergenic | 30.0% | |
| TATAGAGAATATCACAGCAT+TGG | - | chr3.4:83883158-83883177 | None:intergenic | 30.0% | |
| TCACAGAACATCTTTACTTT+CGG | + | chr3.4:83884090-83884109 | MS.gene013576:intron | 30.0% | |
| TCATTAGCAAGTACAATGTT+TGG | + | chr3.4:83884209-83884228 | MS.gene013576:intron | 30.0% | |
| TGACACACTTTATACATACT+TGG | + | chr3.4:83886165-83886184 | MS.gene013576:CDS | 30.0% | |
| TTAAAATCCACACAAATAGC+AGG | - | chr3.4:83884603-83884622 | None:intergenic | 30.0% | |
| TTATCAGCTGAAAGAGATAA+TGG | + | chr3.4:83886064-83886083 | MS.gene013576:CDS | 30.0% | |
| TTCTCTAATGTACCACATTA+AGG | - | chr3.4:83884785-83884804 | None:intergenic | 30.0% | |
| TTGATTTACTGCACTTTATC+TGG | - | chr3.4:83883381-83883400 | None:intergenic | 30.0% | |
| ! | AAATCATCGACATGACTTTT+AGG | + | chr3.4:83883789-83883808 | MS.gene013576:intron | 30.0% |
| ! | CTATAAAGTGAATGACTTGT+TGG | + | chr3.4:83883283-83883302 | MS.gene013576:CDS | 30.0% |
| ! | TCTATCTTATGTTTTCAGAG+TGG | + | chr3.4:83883193-83883212 | MS.gene013576:intron | 30.0% |
| ! | TGTATTTACAAGAGCTTTGA+TGG | - | chr3.4:83883240-83883259 | None:intergenic | 30.0% |
| !! | AAAAGCATTTCATTTCTAGC+TGG | + | chr3.4:83883550-83883569 | MS.gene013576:intron | 30.0% |
| !! | GAATGTTTTGTTGTCTATCA+GGG | - | chr3.4:83883928-83883947 | None:intergenic | 30.0% |
| !! | GACATTGTTTTTCCTTAATG+TGG | + | chr3.4:83884770-83884789 | MS.gene013576:intron | 30.0% |
| !! | TATGGGATTAAGTTGGTTAA+TGG | + | chr3.4:83885243-83885262 | MS.gene013576:intron | 30.0% |
| !! | TGAATGTTTTGTTGTCTATC+AGG | - | chr3.4:83883929-83883948 | None:intergenic | 30.0% |
| !!! | ATATTTTGACTTTGTGAGGT+TGG | - | chr3.4:83885009-83885028 | None:intergenic | 30.0% |
| !!! | CTACATATTTTGACTTTGTG+AGG | - | chr3.4:83885013-83885032 | None:intergenic | 30.0% |
| AAAACACCAAGCTTGAAATC+TGG | + | chr3.4:83885574-83885593 | MS.gene013576:intron | 35.0% | |
| AACTAAGCAACAGATGCATT+AGG | - | chr3.4:83882942-83882961 | None:intergenic | 35.0% | |
| AATGTTTGGATTGAGGGTTT+AGG | + | chr3.4:83884223-83884242 | MS.gene013576:intron | 35.0% | |
| ACCAAATCAATGAACTTCTG+GGG | - | chr3.4:83885423-83885442 | None:intergenic | 35.0% | |
| ACGTGTATCTTGTATTGAAC+AGG | + | chr3.4:83883340-83883359 | MS.gene013576:CDS | 35.0% | |
| AGCAAAACATATGTACCTTG+AGG | - | chr3.4:83882872-83882891 | None:intergenic | 35.0% | |
| ATGTGGTACATTAGAGAATG+AGG | + | chr3.4:83884787-83884806 | MS.gene013576:intron | 35.0% | |
| ATTTACTGCACTTTATCTGG+AGG | - | chr3.4:83883378-83883397 | None:intergenic | 35.0% | |
| CAAAGCTCTTGTAAATACAG+TGG | + | chr3.4:83883241-83883260 | MS.gene013576:CDS | 35.0% | |
| CAAGTACAATGTTTGGATTG+AGG | + | chr3.4:83884216-83884235 | MS.gene013576:intron | 35.0% | |
| CCTTTCAATAACTGTATCCT+CGG | + | chr3.4:83884511-83884530 | MS.gene013576:intron | 35.0% | |
| GAGTAAGTGACCTTAAATCA+TGG | + | chr3.4:83885933-83885952 | MS.gene013576:intron | 35.0% | |
| GTAAATACAGTGGACCATTT+AGG | + | chr3.4:83883251-83883270 | MS.gene013576:CDS | 35.0% | |
| TATAGGTCACAGAACCTAAA+TGG | - | chr3.4:83883268-83883287 | None:intergenic | 35.0% | |
| TATGATCTTTCATACTTCCG+AGG | - | chr3.4:83884531-83884550 | None:intergenic | 35.0% | |
| TGAAAATGACAGAAATGTGG+AGG | - | chr3.4:83885703-83885722 | None:intergenic | 35.0% | |
| TTGGAAGCTTCTTGAGAAAA+AGG | - | chr3.4:83882804-83882823 | None:intergenic | 35.0% | |
| ! | AACTTTTCATCTCTTCACGT+AGG | + | chr3.4:83883007-83883026 | MS.gene013576:intron | 35.0% |
| ! | ACGTAACGCTTGTGATATTT+TGG | - | chr3.4:83884873-83884892 | None:intergenic | 35.0% |
| ! | ATGGTGGAAGTGAATGAAAA+GGG | - | chr3.4:83885354-83885373 | None:intergenic | 35.0% |
| ! | TAGCAACTCACATCTGTTTT+TGG | - | chr3.4:83883103-83883122 | None:intergenic | 35.0% |
| !! | AGAAGCTTCCAATTTTGATG+AGG | + | chr3.4:83882812-83882831 | MS.gene013576:CDS | 35.0% |
| !! | AGTAATGGATTTGGATTGTC+TGG | - | chr3.4:83885653-83885672 | None:intergenic | 35.0% |
| !! | CTACTCATATTTGGTGTTGT+AGG | - | chr3.4:83885854-83885873 | None:intergenic | 35.0% |
| !! | TACCTTGTTGTTGTAGATGT+TGG | - | chr3.4:83885202-83885221 | None:intergenic | 35.0% |
| !! | TTAGAAGGATTTGGTGTGAT+TGG | - | chr3.4:83885902-83885921 | None:intergenic | 35.0% |
| !!! | CATCTGTTTTTGGTCATCAT+TGG | - | chr3.4:83883093-83883112 | None:intergenic | 35.0% |
| ACCAGTACCTCAAAGCAATA+AGG | - | chr3.4:83883506-83883525 | None:intergenic | 40.0% | |
| ACCATGCCCAAGAAAGATTT+AGG | + | chr3.4:83885369-83885388 | MS.gene013576:CDS | 40.0% | |
| ACCTAAATCTTTCTTGGGCA+TGG | - | chr3.4:83885373-83885392 | None:intergenic | 40.0% | |
| AGACTTCCGTCTGCTTAATA+AGG | - | chr3.4:83886137-83886156 | None:intergenic | 40.0% | |
| AGAGAATGAGGAGTTACCAA+GGG | + | chr3.4:83884799-83884818 | MS.gene013576:intron | 40.0% | |
| CACCAACATCTACAACAACA+AGG | + | chr3.4:83885197-83885216 | MS.gene013576:CDS | 40.0% | |
| CCGAGGATACAGTTATTGAA+AGG | - | chr3.4:83884514-83884533 | None:intergenic | 40.0% | |
| GAAGCTTCTTGAGAAAAAGG+CGG | - | chr3.4:83882801-83882820 | None:intergenic | 40.0% | |
| GAGAAGGTTGTTGAAGTTTC+TGG | + | chr3.4:83883308-83883327 | MS.gene013576:CDS | 40.0% | |
| GAGATACCATTCCTAAAGTG+AGG | - | chr3.4:83885065-83885084 | None:intergenic | 40.0% | |
| TAAAAGCAAACGTCTCCTGA+AGG | + | chr3.4:83886111-83886130 | MS.gene013576:CDS | 40.0% | |
| TAAATCTTTCTTGGGCATGG+TGG | - | chr3.4:83885370-83885389 | None:intergenic | 40.0% | |
| TAGAGAATGAGGAGTTACCA+AGG | + | chr3.4:83884798-83884817 | MS.gene013576:intron | 40.0% | |
| TATTCATGGAGTCAGCACTT+TGG | + | chr3.4:83885481-83885500 | MS.gene013576:intron | 40.0% | |
| TGTATGCTTACTCAACGCAT+TGG | + | chr3.4:83885957-83885976 | MS.gene013576:intron | 40.0% | |
| TTGAGTCCAGATTTCAAGCT+TGG | - | chr3.4:83885583-83885602 | None:intergenic | 40.0% | |
| TTGTCTGGTCACAAATCTCA+CGG | - | chr3.4:83885638-83885657 | None:intergenic | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr3.4:83884227-83884246 | MS.gene013576:intron | 40.0% | |
| ! | ACCCCAGAAGTTCATTGATT+TGG | + | chr3.4:83885419-83885438 | MS.gene013576:intron | 40.0% |
| ! | CATGGTGGAAGTGAATGAAA+AGG | - | chr3.4:83885355-83885374 | None:intergenic | 40.0% |
| !! | AGGAGACGTTTGCTTTTACT+CGG | - | chr3.4:83886109-83886128 | None:intergenic | 40.0% |
| !! | ATATCACAGCATTGGCAAAC+AGG | - | chr3.4:83883150-83883169 | None:intergenic | 40.0% |
| !! | GAATGACTTGTTGGATGAGA+AGG | + | chr3.4:83883292-83883311 | MS.gene013576:CDS | 40.0% |
| !! | TCCTTATTGCTTTGAGGTAC+TGG | + | chr3.4:83883502-83883521 | MS.gene013576:intron | 40.0% |
| !! | TGAAGGCCTTATTAAGCAGA+CGG | + | chr3.4:83886128-83886147 | MS.gene013576:CDS | 40.0% |
| AACGGTCAGTTTCACCGTAT+CGG | + | chr3.4:83885792-83885811 | MS.gene013576:CDS | 45.0% | |
| AAGATGAGTGGCCTCACTTT+AGG | + | chr3.4:83885051-83885070 | MS.gene013576:CDS | 45.0% | |
| AAGCAGACGGAAGTCTAAGA+AGG | + | chr3.4:83886141-83886160 | MS.gene013576:CDS | 45.0% | |
| AATTGCAGCTCGAACAGCTT+TGG | - | chr3.4:83885170-83885189 | None:intergenic | 45.0% | |
| AATTTCAGTTGGGGAGACCA+TGG | + | chr3.4:83884977-83884996 | MS.gene013576:intron | 45.0% | |
| ACTGATCACCAATGACTGCT+GGG | - | chr3.4:83884847-83884866 | None:intergenic | 45.0% | |
| AGGTTGTACAGAAGGTGATG+GGG | - | chr3.4:83885319-83885338 | None:intergenic | 45.0% | |
| ATCCAAACACACCCTTAGAG+TGG | + | chr3.4:83884450-83884469 | MS.gene013576:intron | 45.0% | |
| ATTGCAGCTCGAACAGCTTT+GGG | - | chr3.4:83885169-83885188 | None:intergenic | 45.0% | |
| CAGAGTGGTAGAAACACTGA+AGG | + | chr3.4:83883208-83883227 | MS.gene013576:intron | 45.0% | |
| GAAGTGAATGAAAAGGGTCC+AGG | - | chr3.4:83885348-83885367 | None:intergenic | 45.0% | |
| GAGGTTGTACAGAAGGTGAT+GGG | - | chr3.4:83885320-83885339 | None:intergenic | 45.0% | |
| GGACTCAAATGTTGATCCAC+CGG | + | chr3.4:83885595-83885614 | MS.gene013576:intron | 45.0% | |
| GGAGTCAACACATTTGTGAC+CGG | - | chr3.4:83885617-83885636 | None:intergenic | 45.0% | |
| GTCTGCTTAATAAGGCCTTC+AGG | - | chr3.4:83886129-83886148 | None:intergenic | 45.0% | |
| GTGAGTTGCTATGCTAAAGC+TGG | + | chr3.4:83883112-83883131 | MS.gene013576:intron | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr3.4:83884226-83884245 | MS.gene013576:intron | 45.0% | |
| TACCAAGGGTTTGCAGATCA+CGG | + | chr3.4:83884813-83884832 | MS.gene013576:CDS | 45.0% | |
| TACTGATCACCAATGACTGC+TGG | - | chr3.4:83884848-83884867 | None:intergenic | 45.0% | |
| TGAGGTTGTACAGAAGGTGA+TGG | - | chr3.4:83885321-83885340 | None:intergenic | 45.0% | |
| TGTGTTTGGATCGAGGGTTT+GGG | - | chr3.4:83884441-83884460 | None:intergenic | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr3.4:83884228-83884247 | MS.gene013576:intron | 45.0% | |
| ! | GCAATACCCTGCTATTTGTG+TGG | + | chr3.4:83884593-83884612 | MS.gene013576:intron | 45.0% |
| ! | GCTCTTTGATGATAGCCTCA+AGG | + | chr3.4:83882854-83882873 | MS.gene013576:CDS | 45.0% |
| ! | TAAGGGTGTGTTTGGATCGA+GGG | - | chr3.4:83884447-83884466 | None:intergenic | 45.0% |
| ! | TACCACTCTAAGGGTGTGTT+TGG | - | chr3.4:83884455-83884474 | None:intergenic | 45.0% |
| !! | GGAGACGTTTGCTTTTACTC+GGG | - | chr3.4:83886108-83886127 | None:intergenic | 45.0% |
| !! | TTTGGTGTGATTGGTCTGCT+TGG | - | chr3.4:83885893-83885912 | None:intergenic | 45.0% |
| !!! | GTGATTGGTCTGCTTGGTTT+TGG | - | chr3.4:83885887-83885906 | None:intergenic | 45.0% |
| ACCAAGGGTTTGCAGATCAC+GGG | + | chr3.4:83884814-83884833 | MS.gene013576:CDS | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | + | chr3.4:83884232-83884251 | MS.gene013576:intron | 50.0% | |
| CACTTCTGCGTACTGGATCT+CGG | + | chr3.4:83885819-83885838 | MS.gene013576:CDS | 50.0% | |
| GAGATCCAGTACGCAGAAGT+GGG | - | chr3.4:83885820-83885839 | None:intergenic | 50.0% | |
| GCCACTCATCTTCGTCATCA+AGG | - | chr3.4:83885043-83885062 | None:intergenic | 50.0% | |
| GTCAACACATTTGTGACCGG+TGG | - | chr3.4:83885614-83885633 | None:intergenic | 50.0% | |
| GTGTGTTTGGATCGAGGGTT+TGG | - | chr3.4:83884442-83884461 | None:intergenic | 50.0% | |
| TCATGGAGTCAGCACTTTGG+TGG | + | chr3.4:83885484-83885503 | MS.gene013576:intron | 50.0% | |
| TCTGTACAACCTCAGAGACC+TGG | + | chr3.4:83885327-83885346 | MS.gene013576:CDS | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | + | chr3.4:83884233-83884252 | MS.gene013576:intron | 50.0% | |
| TTTGGATCGAGGGTTTGGGA+GGG | - | chr3.4:83884437-83884456 | None:intergenic | 50.0% | |
| ! | CTAAGGGTGTGTTTGGATCG+AGG | - | chr3.4:83884448-83884467 | None:intergenic | 50.0% |
| ! | CTGATTTGCGTGGCTCAGAA+GGG | - | chr3.4:83886033-83886052 | None:intergenic | 50.0% |
| ! | GAGTGGCCTCACTTTAGGAA+TGG | + | chr3.4:83885056-83885075 | MS.gene013576:CDS | 50.0% |
| !! | ACAGCATTGGCAAACAGGCA+TGG | - | chr3.4:83883145-83883164 | None:intergenic | 50.0% |
| !! | CGCATTGAAGCTGATTTGCG+TGG | - | chr3.4:83886043-83886062 | None:intergenic | 50.0% |
| !! | GCCTTGATGACGAAGATGAG+TGG | + | chr3.4:83885039-83885058 | MS.gene013576:CDS | 50.0% |
| !! | GGTCTCTGAGGTTGTACAGA+AGG | - | chr3.4:83885327-83885346 | None:intergenic | 50.0% |
| AAGGGTTTGCAGATCACGGG+GGG | + | chr3.4:83884817-83884836 | MS.gene013576:CDS | 55.0% | |
| CAAGGGTTTGCAGATCACGG+GGG | + | chr3.4:83884816-83884835 | MS.gene013576:CDS | 55.0% | |
| CACAAGCGTTACGTCTTGCC+AGG | + | chr3.4:83884879-83884898 | MS.gene013576:CDS | 55.0% | |
| CCAAGGGTTTGCAGATCACG+GGG | + | chr3.4:83884815-83884834 | MS.gene013576:CDS | 55.0% | |
| CGAGATCCAGTACGCAGAAG+TGG | - | chr3.4:83885821-83885840 | None:intergenic | 55.0% | |
| CGCAGAAGTGGGAACCGATA+CGG | - | chr3.4:83885809-83885828 | None:intergenic | 55.0% | |
| GAAAAGGGTCCAGGTCTCTG+AGG | - | chr3.4:83885339-83885358 | None:intergenic | 55.0% | |
| GTTTGGATCGAGGGTTTGGG+AGG | - | chr3.4:83884438-83884457 | None:intergenic | 55.0% | |
| TCAGTTGGGGAGACCATGGT+TGG | + | chr3.4:83884981-83885000 | MS.gene013576:intron | 55.0% | |
| TGTGAGGTTGGCACCAACCA+TGG | - | chr3.4:83884997-83885016 | None:intergenic | 55.0% | |
| TTGGATCGAGGGTTTGGGAG+GGG | - | chr3.4:83884436-83884455 | None:intergenic | 55.0% | |
| !! | GCTGATTTGCGTGGCTCAGA+AGG | - | chr3.4:83886034-83886053 | None:intergenic | 55.0% |
| !! | TGGCTCAGAAGGGTACTGGT+AGG | - | chr3.4:83886023-83886042 | None:intergenic | 55.0% |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr3.4:83884236-83884255 | MS.gene013576:intron | 60.0% | |
| ATCGAGGGTTTGGGAGGGGA+AGG | - | chr3.4:83884432-83884451 | None:intergenic | 60.0% | |
| CCCCGTGATCTGCAAACCCT+TGG | - | chr3.4:83884818-83884837 | None:intergenic | 60.0% | |
| CGGTTCCCACTTCTGCGTAC+TGG | + | chr3.4:83885812-83885831 | MS.gene013576:CDS | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | + | chr3.4:83884237-83884256 | MS.gene013576:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr3.4:83884238-83884257 | MS.gene013576:intron | 60.0% | |
| TCGAGGGTTTGGGAGGGGAA+GGG | - | chr3.4:83884431-83884450 | None:intergenic | 60.0% | |
| ! | TGCGTGGCTCAGAAGGGTAC+TGG | - | chr3.4:83886027-83886046 | None:intergenic | 60.0% |
| AGGGTTTGGGAGGGGAAGGG+AGG | - | chr3.4:83884428-83884447 | None:intergenic | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | + | chr3.4:83884242-83884261 | MS.gene013576:intron | 65.0% | |
| TGGGAGGGGAAGGGAGGAGA+GGG | - | chr3.4:83884422-83884441 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr3.4:83884241-83884260 | MS.gene013576:intron | 65.0% | |
| TTGGGAGGGGAAGGGAGGAG+AGG | - | chr3.4:83884423-83884442 | None:intergenic | 65.0% | |
| ! | GGGGCGTTCCCAGCAGTCAT+TGG | + | chr3.4:83884836-83884855 | MS.gene013576:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83882771 | 83886198 | 83882771 | ID=MS.gene013576 |
| chr3.4 | mRNA | 83882771 | 83886198 | 83882771 | ID=MS.gene013576.t1;Parent=MS.gene013576 |
| chr3.4 | exon | 83882771 | 83882875 | 83882771 | ID=MS.gene013576.t1.exon1;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83882771 | 83882875 | 83882771 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| chr3.4 | exon | 83883029 | 83883111 | 83883029 | ID=MS.gene013576.t1.exon2;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83883029 | 83883111 | 83883029 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| chr3.4 | exon | 83883211 | 83883361 | 83883211 | ID=MS.gene013576.t1.exon3;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83883211 | 83883361 | 83883211 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| chr3.4 | exon | 83884801 | 83884900 | 83884801 | ID=MS.gene013576.t1.exon4;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83884801 | 83884900 | 83884801 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| chr3.4 | exon | 83884985 | 83885077 | 83884985 | ID=MS.gene013576.t1.exon5;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83884985 | 83885077 | 83884985 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| chr3.4 | exon | 83885173 | 83885218 | 83885173 | ID=MS.gene013576.t1.exon6;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83885173 | 83885218 | 83885173 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| chr3.4 | exon | 83885305 | 83885390 | 83885305 | ID=MS.gene013576.t1.exon7;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83885305 | 83885390 | 83885305 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| chr3.4 | exon | 83885789 | 83885934 | 83885789 | ID=MS.gene013576.t1.exon8;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83885789 | 83885934 | 83885789 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| chr3.4 | exon | 83886028 | 83886198 | 83886028 | ID=MS.gene013576.t1.exon9;Parent=MS.gene013576.t1 |
| chr3.4 | CDS | 83886028 | 83886198 | 83886028 | ID=cds.MS.gene013576.t1;Parent=MS.gene013576.t1 |
| Gene Sequence |
| Protein sequence |
