Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057119.t1 | XP_003602276.1 | 94.8 | 326 | 17 | 0 | 1 | 326 | 1 | 326 | 1.90E-137 | 498.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057119.t1 | Q9M3A3 | 67.9 | 318 | 93 | 3 | 11 | 326 | 2 | 312 | 6.0e-100 | 365.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057119.t1 | G7J7G6 | 94.8 | 326 | 17 | 0 | 1 | 326 | 1 | 326 | 1.4e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057119 | MS.gene06693 | 0.995911 | 2.96E-221 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019711 | MS.gene057119 | PPI |
| MS.gene31641 | MS.gene057119 | PPI |
| MS.gene057119 | MS.gene013576 | PPI |
| MS.gene98197 | MS.gene057119 | PPI |
| MS.gene057119 | MS.gene06902 | PPI |
| MS.gene057119 | MS.gene059163 | PPI |
| MS.gene057119 | MS.gene024488 | PPI |
| MS.gene059163 | MS.gene057119 | PPI |
| MS.gene06693 | MS.gene057119 | PPI |
| MS.gene057119 | MS.gene050599 | PPI |
| MS.gene92121 | MS.gene057119 | PPI |
| MS.gene059164 | MS.gene057119 | PPI |
| MS.gene057119 | MS.gene54480 | PPI |
| MS.gene057119 | MS.gene021449 | PPI |
| MS.gene22839 | MS.gene057119 | PPI |
| MS.gene057119 | MS.gene79701 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057119.t1 | MTR_3g091760 | 97.853 | 326 | 7 | 0 | 1 | 326 | 1 | 326 | 0.0 | 655 |
| MS.gene057119.t1 | MTR_1g007880 | 74.924 | 327 | 77 | 3 | 1 | 326 | 1 | 323 | 3.21e-179 | 498 |
| MS.gene057119.t1 | MTR_1g007880 | 74.924 | 327 | 77 | 3 | 1 | 326 | 20 | 342 | 1.30e-178 | 498 |
| MS.gene057119.t1 | MTR_3g091760 | 98.190 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 2.10e-162 | 453 |
| MS.gene057119.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 3.63e-42 | 145 |
| MS.gene057119.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 1.59e-41 | 144 |
| MS.gene057119.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 2.96e-41 | 146 |
| MS.gene057119.t1 | MTR_8g028410 | 51.908 | 131 | 63 | 0 | 16 | 146 | 15 | 145 | 5.94e-41 | 145 |
| MS.gene057119.t1 | MTR_7g116710 | 48.413 | 126 | 65 | 0 | 21 | 146 | 2 | 127 | 1.81e-35 | 130 |
| MS.gene057119.t1 | MTR_6g087680 | 32.374 | 139 | 91 | 2 | 24 | 160 | 19 | 156 | 1.77e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057119.t1 | AT3G49290 | 69.811 | 318 | 87 | 4 | 11 | 326 | 2 | 312 | 3.43e-152 | 429 |
| MS.gene057119.t1 | AT3G49290 | 69.811 | 318 | 87 | 4 | 11 | 326 | 2 | 312 | 3.43e-152 | 429 |
| MS.gene057119.t1 | AT5G24310 | 67.683 | 328 | 94 | 6 | 4 | 326 | 1 | 321 | 1.01e-146 | 416 |
| MS.gene057119.t1 | AT5G24310 | 68.847 | 321 | 88 | 6 | 11 | 326 | 2 | 315 | 8.70e-146 | 413 |
| MS.gene057119.t1 | AT5G24310 | 65.244 | 328 | 88 | 7 | 4 | 326 | 1 | 307 | 4.45e-136 | 389 |
| MS.gene057119.t1 | AT5G24310 | 70.320 | 219 | 61 | 3 | 11 | 226 | 2 | 219 | 2.43e-100 | 295 |
| MS.gene057119.t1 | AT5G42030 | 37.377 | 305 | 149 | 5 | 14 | 314 | 12 | 278 | 8.88e-55 | 180 |
| MS.gene057119.t1 | AT5G42030 | 39.245 | 265 | 128 | 4 | 14 | 274 | 12 | 247 | 5.38e-53 | 177 |
| MS.gene057119.t1 | AT5G42030 | 45.349 | 172 | 82 | 1 | 14 | 185 | 12 | 171 | 1.28e-43 | 149 |
| MS.gene057119.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 1.78e-36 | 133 |
| MS.gene057119.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 1.92e-36 | 133 |
| MS.gene057119.t1 | AT2G46225 | 47.328 | 131 | 69 | 0 | 16 | 146 | 12 | 142 | 3.60e-36 | 133 |
| MS.gene057119.t1 | AT5G42030 | 33.333 | 255 | 128 | 5 | 64 | 314 | 15 | 231 | 1.07e-30 | 116 |
Find 77 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGGTTGTTGAAGTTTC+TGG | 0.188763 | 3.1:+73656040 | MS.gene057119:CDS |
| ACGTAACGCTTGTGATATTT+TGG | 0.201872 | 3.1:-73657370 | None:intergenic |
| CATATAAACCTCATCAAAAT+TGG | 0.228895 | 3.1:-73655553 | None:intergenic |
| CAACAAGTCATTCACTTTAT+AGG | 0.236527 | 3.1:-73656014 | None:intergenic |
| TTGGAAGCTTCTTGAGAAAA+AGG | 0.270340 | 3.1:-73655534 | None:intergenic |
| TGTATTTACAAGAGCTTTGA+TGG | 0.282220 | 3.1:-73655969 | None:intergenic |
| AGACTTCCGTCTGCTTAATA+AGG | 0.282251 | 3.1:-73658629 | None:intergenic |
| GTGATTGGTCTGCTTGGTTT+TGG | 0.288333 | 3.1:-73658377 | None:intergenic |
| GTACAGACCTAAATCTTTCT+TGG | 0.329663 | 3.1:-73657876 | None:intergenic |
| GTAGTTGATCTGCTCATATT+TGG | 0.333872 | 3.1:-73658353 | None:intergenic |
| ACCATGCCCAAGAAAGATTT+AGG | 0.343069 | 3.1:+73657869 | MS.gene057119:CDS |
| ATCAGCTTCAATGCGATTAT+CGG | 0.346690 | 3.1:+73658543 | MS.gene057119:CDS |
| AAGATGAGTGGCCTCACTTT+AGG | 0.348049 | 3.1:+73657551 | MS.gene057119:CDS |
| CGGTTCCCACTTCTGCGTAC+TGG | 0.400723 | 3.1:+73658305 | MS.gene057119:CDS |
| TTAGAAGGATTTGGTGTGAT+TGG | 0.416608 | 3.1:-73658392 | None:intergenic |
| TTACATGTATTGAAGATAAA+CGG | 0.433228 | 3.1:+73658267 | MS.gene057119:intron |
| GTCTGCTTAATAAGGCCTTC+AGG | 0.434013 | 3.1:-73658621 | None:intergenic |
| ACGTGTATCTTGTATTGAAC+AGG | 0.439316 | 3.1:+73656072 | MS.gene057119:CDS |
| TTATCGGCTGAAAGAGATAA+TGG | 0.439947 | 3.1:+73658559 | MS.gene057119:CDS |
| ACCAAGGGTTTGCAGATCAC+GGG | 0.440461 | 3.1:+73657314 | MS.gene057119:CDS |
| TACCTTGTTGTTGTAGATGT+TGG | 0.456352 | 3.1:-73657699 | None:intergenic |
| CTATAAAGTGAATGACTTGT+TGG | 0.462035 | 3.1:+73656015 | MS.gene057119:CDS |
| TTTGGTGTGATTGGTCTGCT+TGG | 0.467620 | 3.1:-73658383 | None:intergenic |
| TGACACACTTTATACATACT+TGG | 0.470816 | 3.1:+73658660 | MS.gene057119:CDS |
| TACAGACCTAAATCTTTCTT+GGG | 0.473875 | 3.1:-73657875 | None:intergenic |
| ATATTTCGACTTTGTGAGGT+TGG | 0.481617 | 3.1:-73657506 | None:intergenic |
| GGGGCGTTCCCAACAGTCAT+TGG | 0.483025 | 3.1:+73657336 | MS.gene057119:CDS |
| GCCACTCATCTTCGTCATCA+AGG | 0.483644 | 3.1:-73657540 | None:intergenic |
| ACCTAAATCTTTCTTGGGCA+TGG | 0.484697 | 3.1:-73657870 | None:intergenic |
| TCTGCTCATATTTGGTGTTG+TGG | 0.484916 | 3.1:-73658345 | None:intergenic |
| CACTTCTGCGTACTGGATCT+CGG | 0.486191 | 3.1:+73658312 | MS.gene057119:CDS |
| TACCAAGGGTTTGCAGATCA+CGG | 0.499084 | 3.1:+73657313 | MS.gene057119:CDS |
| AACGGTCAGTTTCACCGTAC+CGG | 0.501106 | 3.1:+73658285 | MS.gene057119:CDS |
| CACAAGCGTTACGTCTTGCC+AGG | 0.503666 | 3.1:+73657379 | MS.gene057119:CDS |
| ACTGATCACCAATGACTGTT+GGG | 0.509952 | 3.1:-73657344 | None:intergenic |
| CCCCGTGATCTGCAAACCCT+TGG | 0.511606 | 3.1:-73657315 | None:intergenic |
| TTTACTTTCATTCATGGGGA+AGG | 0.513085 | 3.1:+73655491 | None:intergenic |
| TCCTTCTAATACAAAACAAA+GGG | 0.513827 | 3.1:+73658406 | MS.gene057119:CDS |
| CAGTACGCAGAAGTGGGAAC+CGG | 0.514452 | 3.1:-73658304 | None:intergenic |
| TATAGGTCACAGAACCTAGA+TGG | 0.516848 | 3.1:-73655997 | None:intergenic |
| GAGGTTGTACAGAAGGTGAT+GGG | 0.517973 | 3.1:-73657817 | None:intergenic |
| TACTGATCACCAATGACTGT+TGG | 0.518974 | 3.1:-73657345 | None:intergenic |
| GAAGTGAATGAAAAGGGTCC+AGG | 0.526656 | 3.1:-73657845 | None:intergenic |
| GTAAATACAGTAGACCATCT+AGG | 0.531953 | 3.1:+73655983 | MS.gene057119:CDS |
| CTACATATTTCGACTTTGTG+AGG | 0.533299 | 3.1:-73657510 | None:intergenic |
| CGCAGAAGTGGGAACCGGTA+CGG | 0.553636 | 3.1:-73658299 | None:intergenic |
| ATCCTTCTAATACAAAACAA+AGG | 0.555077 | 3.1:+73658405 | MS.gene057119:CDS |
| CATGGTGGAAGTGAATGAAA+AGG | 0.555407 | 3.1:-73657852 | None:intergenic |
| CGAGATCCAGTACGCAGAAG+TGG | 0.556615 | 3.1:-73658311 | None:intergenic |
| CTCACAAAGTCGAAATATGT+AGG | 0.560024 | 3.1:+73657511 | MS.gene057119:CDS |
| AAGCAGACGGAAGTCTAAGA+AGG | 0.564557 | 3.1:+73658636 | MS.gene057119:CDS |
| TCAGTTGGGGAGACCATGGT+TGG | 0.565153 | 3.1:+73657481 | MS.gene057119:intron |
| CCAAGGGTTTGCAGATCACG+GGG | 0.566119 | 3.1:+73657315 | MS.gene057119:CDS |
| ATGTGGTACACTAGAGAATG+AGG | 0.566853 | 3.1:+73657287 | MS.gene057119:intron |
| GGTCTCTGAGGTTGTACAGA+AGG | 0.570648 | 3.1:-73657824 | None:intergenic |
| TGAGGTTGTACAGAAGGTGA+TGG | 0.570930 | 3.1:-73657818 | None:intergenic |
| TGTGAGGTTGGCACCAACCA+TGG | 0.575403 | 3.1:-73657494 | None:intergenic |
| AATTTCAGTTGGGGAGACCA+TGG | 0.584719 | 3.1:+73657477 | MS.gene057119:intron |
| ATGGTGGAAGTGAATGAAAA+GGG | 0.586184 | 3.1:-73657851 | None:intergenic |
| GAGTGGCCTCACTTTAGGAA+TGG | 0.598543 | 3.1:+73657556 | MS.gene057119:CDS |
| TCTGTACAACCTCAGAGACC+TGG | 0.603024 | 3.1:+73657827 | MS.gene057119:CDS |
| GCTATTTGATGATAGCCTCA+AGG | 0.604986 | 3.1:+73655587 | MS.gene057119:CDS |
| TAAATCTTTCTTGGGCATGG+TGG | 0.605827 | 3.1:-73657867 | None:intergenic |
| TAAAAGCAAACGTCTCCTGA+AGG | 0.607398 | 3.1:+73658606 | MS.gene057119:CDS |
| TGAAGGCCTTATTAAGCAGA+CGG | 0.609310 | 3.1:+73658623 | MS.gene057119:CDS |
| GAGATACCATTCCTAAAGTG+AGG | 0.609896 | 3.1:-73657562 | None:intergenic |
| AAGGGTTTGCAGATCACGGG+GGG | 0.624565 | 3.1:+73657317 | MS.gene057119:CDS |
| GCCTTGATGACGAAGATGAG+TGG | 0.627348 | 3.1:+73657539 | MS.gene057119:CDS |
| CACCAACATCTACAACAACA+AGG | 0.628642 | 3.1:+73657697 | MS.gene057119:CDS |
| CAGAGTCGTAGAAACACTGA+AGG | 0.629192 | 3.1:+73655940 | MS.gene057119:intron |
| GAATGACTTGTTGGACGAGA+AGG | 0.642436 | 3.1:+73656024 | MS.gene057119:CDS |
| AGAGAATGAGGAGTTACCAA+GGG | 0.644511 | 3.1:+73657299 | MS.gene057119:intron |
| GAGATCCAGTACGCAGAAGT+GGG | 0.648754 | 3.1:-73658310 | None:intergenic |
| GAAAAGGGTCCAGGTCTCTG+AGG | 0.654241 | 3.1:-73657836 | None:intergenic |
| TAGAGAATGAGGAGTTACCA+AGG | 0.667769 | 3.1:+73657298 | MS.gene057119:intron |
| AGGTTGTACAGAAGGTGATG+GGG | 0.679715 | 3.1:-73657816 | None:intergenic |
| CAAGGGTTTGCAGATCACGG+GGG | 0.681301 | 3.1:+73657316 | MS.gene057119:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTGAAATCAAAATATTA+TGG | - | chr3.1:73657596-73657615 | None:intergenic | 15.0% |
| !! | TTGCAATTATTTATGAAAAA+AGG | + | chr3.1:73656776-73656795 | MS.gene057119:intron | 15.0% |
| !!! | AACATAAGATTTTATATAGT+AGG | - | chr3.1:73657627-73657646 | None:intergenic | 15.0% |
| !!! | TCTTGATTTTGTTATTATTT+TGG | + | chr3.1:73657777-73657796 | MS.gene057119:intron | 15.0% |
| !!! | TGGTTGTTTTATAAAAATAT+TGG | + | chr3.1:73658001-73658020 | MS.gene057119:intron | 15.0% |
| !!! | TGTTTTATAAAAATATTGGA+TGG | + | chr3.1:73658005-73658024 | MS.gene057119:intron | 15.0% |
| !! | AAAAAAAATCAAAATCTGCT+TGG | - | chr3.1:73658039-73658058 | None:intergenic | 20.0% |
| !! | AAGAAAACACTAATAAGTAA+TGG | - | chr3.1:73658162-73658181 | None:intergenic | 20.0% |
| !! | AAGATAGAATAAGAAAACAA+GGG | - | chr3.1:73655913-73655932 | None:intergenic | 20.0% |
| !! | ACTCTTTATATAATTTCAGT+TGG | + | chr3.1:73657466-73657485 | MS.gene057119:intron | 20.0% |
| !! | ATTATATTATGGGATTAAGT+TGG | + | chr3.1:73657736-73657755 | MS.gene057119:intron | 20.0% |
| !! | CTCTTTATATAATTTCAGTT+GGG | + | chr3.1:73657467-73657486 | MS.gene057119:intron | 20.0% |
| !! | GTTTGAATTCTTTATTATCT+TGG | + | chr3.1:73657221-73657240 | MS.gene057119:intron | 20.0% |
| !! | TAAGATAGAATAAGAAAACA+AGG | - | chr3.1:73655914-73655933 | None:intergenic | 20.0% |
| !! | TAATTGCAAAGATGAATAAT+TGG | + | chr3.1:73656142-73656161 | MS.gene057119:intron | 20.0% |
| !! | TCTTTATATAATTTCAGTTG+GGG | + | chr3.1:73657468-73657487 | MS.gene057119:intron | 20.0% |
| !! | TTACATGTATTGAAGATAAA+CGG | + | chr3.1:73658267-73658286 | MS.gene057119:intron | 20.0% |
| !!! | ATTGATTTGGTTATTACTTA+TGG | + | chr3.1:73657929-73657948 | MS.gene057119:intron | 20.0% |
| ! | AAATGTGGAGTAAATCAATA+TGG | - | chr3.1:73658185-73658204 | None:intergenic | 25.0% |
| ! | AACTTCAACAATTTCAAGAA+AGG | - | chr3.1:73657204-73657223 | None:intergenic | 25.0% |
| ! | ACAAATGCTGCATTATATTA+TGG | + | chr3.1:73657725-73657744 | MS.gene057119:intron | 25.0% |
| ! | ACTTCAACAATTTCAAGAAA+GGG | - | chr3.1:73657203-73657222 | None:intergenic | 25.0% |
| ! | ATAATATCCTTATTGCTTTG+AGG | + | chr3.1:73656228-73656247 | MS.gene057119:intron | 25.0% |
| ! | ATCCTTCTAATACAAAACAA+AGG | + | chr3.1:73658405-73658424 | MS.gene057119:CDS | 25.0% |
| ! | CAAATGCTGCATTATATTAT+GGG | + | chr3.1:73657726-73657745 | MS.gene057119:intron | 25.0% |
| ! | CATATAAACCTCATCAAAAT+TGG | - | chr3.1:73655556-73655575 | None:intergenic | 25.0% |
| ! | CTAAAAAGATTTAGGTACTT+AGG | - | chr3.1:73656691-73656710 | None:intergenic | 25.0% |
| ! | GAAGTTATTGCTCATATATT+TGG | + | chr3.1:73656975-73656994 | MS.gene057119:intron | 25.0% |
| ! | TCACTCAAAATCAATAACTA+AGG | - | chr3.1:73657066-73657085 | None:intergenic | 25.0% |
| ! | TCCTTCTAATACAAAACAAA+GGG | + | chr3.1:73658406-73658425 | MS.gene057119:CDS | 25.0% |
| ! | TTGGTTATTACTTATGGATT+TGG | + | chr3.1:73657935-73657954 | MS.gene057119:intron | 25.0% |
| !! | CAACATTTATTTCTTGAGAT+AGG | + | chr3.1:73656203-73656222 | MS.gene057119:intron | 25.0% |
| !! | TGTTTTGTATTAGAAGGATT+TGG | - | chr3.1:73658404-73658423 | None:intergenic | 25.0% |
| !!! | ACACTAATAAGTAATGGATT+TGG | - | chr3.1:73658156-73658175 | None:intergenic | 25.0% |
| !!! | CATATGTTTCACTACTTTTT+TGG | + | chr3.1:73655612-73655631 | MS.gene057119:intron | 25.0% |
| !!! | TATTATTTTGGTGCAGTAAA+GGG | + | chr3.1:73657789-73657808 | MS.gene057119:intron | 25.0% |
| !!! | TTATTATTTTGGTGCAGTAA+AGG | + | chr3.1:73657788-73657807 | MS.gene057119:intron | 25.0% |
| !!! | TTTCTGTCATTTTCACATAA+AGG | + | chr3.1:73658202-73658221 | MS.gene057119:intron | 25.0% |
| AAAATACCAAGCTTGAAATC+TGG | + | chr3.1:73658068-73658087 | MS.gene057119:intron | 30.0% | |
| AAATCATGCTTCGAATTGAA+TGG | - | chr3.1:73657152-73657171 | None:intergenic | 30.0% | |
| AACCAAATCAATGAACTTCT+GGG | - | chr3.1:73657921-73657940 | None:intergenic | 30.0% | |
| AAGAAAATGTTATACATGCC+TGG | - | chr3.1:73657400-73657419 | None:intergenic | 30.0% | |
| ATCAGTATCTCAAAGCAATA+AGG | - | chr3.1:73656579-73656598 | None:intergenic | 30.0% | |
| ATGTGAAAATGACAGAAATG+TGG | - | chr3.1:73658200-73658219 | None:intergenic | 30.0% | |
| ATTAGACTATGATCTTAACG+GGG | - | chr3.1:73655657-73655676 | None:intergenic | 30.0% | |
| CAACAAGTCATTCACTTTAT+AGG | - | chr3.1:73656017-73656036 | None:intergenic | 30.0% | |
| CATTAGACTATGATCTTAAC+GGG | - | chr3.1:73655658-73655677 | None:intergenic | 30.0% | |
| GCATTAGACTATGATCTTAA+CGG | - | chr3.1:73655659-73655678 | None:intergenic | 30.0% | |
| GCTAAGCACTAAAAAGATTT+AGG | - | chr3.1:73656699-73656718 | None:intergenic | 30.0% | |
| TAAAATCCACACAAATACCA+GGG | - | chr3.1:73657102-73657121 | None:intergenic | 30.0% | |
| TAACCAAATCAATGAACTTC+TGG | - | chr3.1:73657922-73657941 | None:intergenic | 30.0% | |
| TAAGCATACAACCATGATTA+AGG | - | chr3.1:73658439-73658458 | None:intergenic | 30.0% | |
| TACAGACCTAAATCTTTCTT+GGG | - | chr3.1:73657878-73657897 | None:intergenic | 30.0% | |
| TATAGAGAATATCACAGCAT+TGG | - | chr3.1:73655890-73655909 | None:intergenic | 30.0% | |
| TCACAGAACATCTTTACTTT+CGG | + | chr3.1:73656822-73656841 | MS.gene057119:intron | 30.0% | |
| TGACACACTTTATACATACT+TGG | + | chr3.1:73658660-73658679 | MS.gene057119:CDS | 30.0% | |
| TTAAAATCCACACAAATACC+AGG | - | chr3.1:73657103-73657122 | None:intergenic | 30.0% | |
| TTGATTTACTGCACTTTATC+TGG | - | chr3.1:73656113-73656132 | None:intergenic | 30.0% | |
| ! | AAATCATCGACATGACTTTT+AGG | + | chr3.1:73656521-73656540 | MS.gene057119:intron | 30.0% |
| ! | CTATAAAGTGAATGACTTGT+TGG | + | chr3.1:73656015-73656034 | MS.gene057119:CDS | 30.0% |
| ! | TGTATTTACAAGAGCTTTGA+TGG | - | chr3.1:73655972-73655991 | None:intergenic | 30.0% |
| !! | AAAAGCATTTCATTTCTAGC+TGG | + | chr3.1:73656282-73656301 | MS.gene057119:intron | 30.0% |
| !! | GACATTGTTTTTCCTTAATG+TGG | + | chr3.1:73657270-73657289 | MS.gene057119:intron | 30.0% |
| !! | TATGGGATTAAGTTGGTTAA+TGG | + | chr3.1:73657743-73657762 | MS.gene057119:intron | 30.0% |
| !!! | ACCCTTTGTTTTGTATTAGA+AGG | - | chr3.1:73658410-73658429 | None:intergenic | 30.0% |
| ACCAAATCAATGAACTTCTG+GGG | - | chr3.1:73657920-73657939 | None:intergenic | 35.0% | |
| ACGTGTATCTTGTATTGAAC+AGG | + | chr3.1:73656072-73656091 | MS.gene057119:CDS | 35.0% | |
| AGTGAAACATATGTACCTTG+AGG | - | chr3.1:73655605-73655624 | None:intergenic | 35.0% | |
| ATATTTCGACTTTGTGAGGT+TGG | - | chr3.1:73657509-73657528 | None:intergenic | 35.0% | |
| ATCAGCTTCAATGCGATTAT+CGG | + | chr3.1:73658543-73658562 | MS.gene057119:CDS | 35.0% | |
| ATTTACTGCACTTTATCTGG+AGG | - | chr3.1:73656110-73656129 | None:intergenic | 35.0% | |
| CCTTTCAATAACTGTATCCT+CGG | + | chr3.1:73657011-73657030 | MS.gene057119:intron | 35.0% | |
| CTACATATTTCGACTTTGTG+AGG | - | chr3.1:73657513-73657532 | None:intergenic | 35.0% | |
| CTCACAAAGTCGAAATATGT+AGG | + | chr3.1:73657511-73657530 | MS.gene057119:CDS | 35.0% | |
| GTAAATACAGTAGACCATCT+AGG | + | chr3.1:73655983-73656002 | MS.gene057119:CDS | 35.0% | |
| GTACAGACCTAAATCTTTCT+TGG | - | chr3.1:73657879-73657898 | None:intergenic | 35.0% | |
| GTAGTTGATCTGCTCATATT+TGG | - | chr3.1:73658356-73658375 | None:intergenic | 35.0% | |
| TATGATCTTTCATACTTCCG+AGG | - | chr3.1:73657031-73657050 | None:intergenic | 35.0% | |
| TTCTCTAGTGTACCACATTA+AGG | - | chr3.1:73657285-73657304 | None:intergenic | 35.0% | |
| TTGGAAGCTTCTTGAGAAAA+AGG | - | chr3.1:73655537-73655556 | None:intergenic | 35.0% | |
| ! | AAATCATTGACGTGACTTGT+AGG | + | chr3.1:73656180-73656199 | MS.gene057119:intron | 35.0% |
| ! | ACGTAACGCTTGTGATATTT+TGG | - | chr3.1:73657373-73657392 | None:intergenic | 35.0% |
| ! | ATGGTGGAAGTGAATGAAAA+GGG | - | chr3.1:73657854-73657873 | None:intergenic | 35.0% |
| ! | TAGCAACTCACATCTGTTTT+TGG | - | chr3.1:73655835-73655854 | None:intergenic | 35.0% |
| ! | TTATCGGCTGAAAGAGATAA+TGG | + | chr3.1:73658559-73658578 | MS.gene057119:CDS | 35.0% |
| !! | AGAAGCTTCCAATTTTGATG+AGG | + | chr3.1:73655545-73655564 | MS.gene057119:CDS | 35.0% |
| !! | AGTAATGGATTTGGATTGTC+TGG | - | chr3.1:73658147-73658166 | None:intergenic | 35.0% |
| !! | ATATCACAGCATTGGCAAAT+AGG | - | chr3.1:73655882-73655901 | None:intergenic | 35.0% |
| !! | TACCTTGTTGTTGTAGATGT+TGG | - | chr3.1:73657702-73657721 | None:intergenic | 35.0% |
| !! | TTAGAAGGATTTGGTGTGAT+TGG | - | chr3.1:73658395-73658414 | None:intergenic | 35.0% |
| ACAATACCCTGGTATTTGTG+TGG | + | chr3.1:73657093-73657112 | MS.gene057119:intron | 40.0% | |
| ACCAGTACCTCAAAGCAATA+AGG | - | chr3.1:73656238-73656257 | None:intergenic | 40.0% | |
| ACCATGCCCAAGAAAGATTT+AGG | + | chr3.1:73657869-73657888 | MS.gene057119:CDS | 40.0% | |
| ACCTAAATCTTTCTTGGGCA+TGG | - | chr3.1:73657873-73657892 | None:intergenic | 40.0% | |
| ACTGATCACCAATGACTGTT+GGG | - | chr3.1:73657347-73657366 | None:intergenic | 40.0% | |
| AGACTTCCGTCTGCTTAATA+AGG | - | chr3.1:73658632-73658651 | None:intergenic | 40.0% | |
| AGAGAATGAGGAGTTACCAA+GGG | + | chr3.1:73657299-73657318 | MS.gene057119:intron | 40.0% | |
| AGGGTAAGTGACCTTAATCA+TGG | + | chr3.1:73658425-73658444 | MS.gene057119:intron | 40.0% | |
| AGTTGGTTAATGGCTCAATG+AGG | + | chr3.1:73657753-73657772 | MS.gene057119:intron | 40.0% | |
| ATGTGGTACACTAGAGAATG+AGG | + | chr3.1:73657287-73657306 | MS.gene057119:intron | 40.0% | |
| CACCAACATCTACAACAACA+AGG | + | chr3.1:73657697-73657716 | MS.gene057119:CDS | 40.0% | |
| CATTTATGCAGTCAGCACTT+TGG | + | chr3.1:73657978-73657997 | MS.gene057119:intron | 40.0% | |
| CCGAGGATACAGTTATTGAA+AGG | - | chr3.1:73657014-73657033 | None:intergenic | 40.0% | |
| GAAGCTTCTTGAGAAAAAGG+CGG | - | chr3.1:73655534-73655553 | None:intergenic | 40.0% | |
| GAGAAGGTTGTTGAAGTTTC+TGG | + | chr3.1:73656040-73656059 | MS.gene057119:CDS | 40.0% | |
| GAGATACCATTCCTAAAGTG+AGG | - | chr3.1:73657565-73657584 | None:intergenic | 40.0% | |
| GGACTCAAATGTTGATCCAA+TGG | + | chr3.1:73658089-73658108 | MS.gene057119:intron | 40.0% | |
| GTGAAAGTTCAACAATACCC+TGG | + | chr3.1:73657082-73657101 | MS.gene057119:intron | 40.0% | |
| TAAAAGCAAACGTCTCCTGA+AGG | + | chr3.1:73658606-73658625 | MS.gene057119:CDS | 40.0% | |
| TAAATCTTTCTTGGGCATGG+TGG | - | chr3.1:73657870-73657889 | None:intergenic | 40.0% | |
| TACTGATCACCAATGACTGT+TGG | - | chr3.1:73657348-73657367 | None:intergenic | 40.0% | |
| TAGAGAATGAGGAGTTACCA+AGG | + | chr3.1:73657298-73657317 | MS.gene057119:intron | 40.0% | |
| TATAGGTCACAGAACCTAGA+TGG | - | chr3.1:73656000-73656019 | None:intergenic | 40.0% | |
| TGTATGCTTACTCGACACAT+TGG | + | chr3.1:73658449-73658468 | MS.gene057119:intron | 40.0% | |
| TTGAGTCCAGATTTCAAGCT+TGG | - | chr3.1:73658077-73658096 | None:intergenic | 40.0% | |
| TTGTCTGGTCACAAATCTCA+CGG | - | chr3.1:73658132-73658151 | None:intergenic | 40.0% | |
| ! | AACTTTTCATCTGTTCGCGT+AGG | + | chr3.1:73655739-73655758 | MS.gene057119:intron | 40.0% |
| ! | ACCCCAGAAGTTCATTGATT+TGG | + | chr3.1:73657916-73657935 | MS.gene057119:intron | 40.0% |
| ! | ATGATTTTGCAACTGCAGCT+GGG | + | chr3.1:73657165-73657184 | MS.gene057119:intron | 40.0% |
| ! | CATGGTGGAAGTGAATGAAA+AGG | - | chr3.1:73657855-73657874 | None:intergenic | 40.0% |
| ! | GCTATTTGATGATAGCCTCA+AGG | + | chr3.1:73655587-73655606 | MS.gene057119:CDS | 40.0% |
| !! | AGGAGACGTTTGCTTTTACT+CGG | - | chr3.1:73658604-73658623 | None:intergenic | 40.0% |
| !! | TCCTTATTGCTTTGAGGTAC+TGG | + | chr3.1:73656234-73656253 | MS.gene057119:intron | 40.0% |
| !! | TCTGCTCATATTTGGTGTTG+TGG | - | chr3.1:73658348-73658367 | None:intergenic | 40.0% |
| !! | TGAAGGCCTTATTAAGCAGA+CGG | + | chr3.1:73658623-73658642 | MS.gene057119:CDS | 40.0% |
| !!! | CATCTGTTTTTGGTCGTCAT+TGG | - | chr3.1:73655825-73655844 | None:intergenic | 40.0% |
| AAGATGAGTGGCCTCACTTT+AGG | + | chr3.1:73657551-73657570 | MS.gene057119:CDS | 45.0% | |
| AAGCAGACGGAAGTCTAAGA+AGG | + | chr3.1:73658636-73658655 | MS.gene057119:CDS | 45.0% | |
| AATTGCAGCTCGAACAGCTT+TGG | - | chr3.1:73657670-73657689 | None:intergenic | 45.0% | |
| AATTTCAGTTGGGGAGACCA+TGG | + | chr3.1:73657477-73657496 | MS.gene057119:intron | 45.0% | |
| AGGTTGTACAGAAGGTGATG+GGG | - | chr3.1:73657819-73657838 | None:intergenic | 45.0% | |
| ATTGCAGCTCGAACAGCTTT+GGG | - | chr3.1:73657669-73657688 | None:intergenic | 45.0% | |
| CAGAGTCGTAGAAACACTGA+AGG | + | chr3.1:73655940-73655959 | MS.gene057119:intron | 45.0% | |
| GAAGTGAATGAAAAGGGTCC+AGG | - | chr3.1:73657848-73657867 | None:intergenic | 45.0% | |
| GAGGTTGTACAGAAGGTGAT+GGG | - | chr3.1:73657820-73657839 | None:intergenic | 45.0% | |
| GTCAACGCATTTGTGACCAT+TGG | - | chr3.1:73658108-73658127 | None:intergenic | 45.0% | |
| GTCTGCTTAATAAGGCCTTC+AGG | - | chr3.1:73658624-73658643 | None:intergenic | 45.0% | |
| GTGAGTTGCTATGCTAAAGC+TGG | + | chr3.1:73655844-73655863 | MS.gene057119:intron | 45.0% | |
| TACCAAGGGTTTGCAGATCA+CGG | + | chr3.1:73657313-73657332 | MS.gene057119:CDS | 45.0% | |
| TGAGGTTGTACAGAAGGTGA+TGG | - | chr3.1:73657821-73657840 | None:intergenic | 45.0% | |
| TTATGCAGTCAGCACTTTGG+TGG | + | chr3.1:73657981-73658000 | MS.gene057119:intron | 45.0% | |
| ! | CATGATTTTGCAACTGCAGC+TGG | + | chr3.1:73657164-73657183 | MS.gene057119:intron | 45.0% |
| ! | CTGATTTTCGTGGCTCAGAA+GGG | - | chr3.1:73658528-73658547 | None:intergenic | 45.0% |
| !! | CGCATTGAAGCTGATTTTCG+TGG | - | chr3.1:73658538-73658557 | None:intergenic | 45.0% |
| !! | GAATGACTTGTTGGACGAGA+AGG | + | chr3.1:73656024-73656043 | MS.gene057119:CDS | 45.0% |
| !! | GGAGACGTTTGCTTTTACTC+GGG | - | chr3.1:73658603-73658622 | None:intergenic | 45.0% |
| !! | TTTGGTGTGATTGGTCTGCT+TGG | - | chr3.1:73658386-73658405 | None:intergenic | 45.0% |
| !!! | GTGATTGGTCTGCTTGGTTT+TGG | - | chr3.1:73658380-73658399 | None:intergenic | 45.0% |
| AACGGTCAGTTTCACCGTAC+CGG | + | chr3.1:73658285-73658304 | MS.gene057119:CDS | 50.0% | |
| ACCAAGGGTTTGCAGATCAC+GGG | + | chr3.1:73657314-73657333 | MS.gene057119:CDS | 50.0% | |
| CACTTCTGCGTACTGGATCT+CGG | + | chr3.1:73658312-73658331 | MS.gene057119:CDS | 50.0% | |
| GAGATCCAGTACGCAGAAGT+GGG | - | chr3.1:73658313-73658332 | None:intergenic | 50.0% | |
| GCCACTCATCTTCGTCATCA+AGG | - | chr3.1:73657543-73657562 | None:intergenic | 50.0% | |
| TCTGTACAACCTCAGAGACC+TGG | + | chr3.1:73657827-73657846 | MS.gene057119:CDS | 50.0% | |
| ! | GAGTGGCCTCACTTTAGGAA+TGG | + | chr3.1:73657556-73657575 | MS.gene057119:CDS | 50.0% |
| !! | GCCTTGATGACGAAGATGAG+TGG | + | chr3.1:73657539-73657558 | MS.gene057119:CDS | 50.0% |
| !! | GCTGATTTTCGTGGCTCAGA+AGG | - | chr3.1:73658529-73658548 | None:intergenic | 50.0% |
| !! | GGTCTCTGAGGTTGTACAGA+AGG | - | chr3.1:73657827-73657846 | None:intergenic | 50.0% |
| AAGGGTTTGCAGATCACGGG+GGG | + | chr3.1:73657317-73657336 | MS.gene057119:CDS | 55.0% | |
| CAAGGGTTTGCAGATCACGG+GGG | + | chr3.1:73657316-73657335 | MS.gene057119:CDS | 55.0% | |
| CACAAGCGTTACGTCTTGCC+AGG | + | chr3.1:73657379-73657398 | MS.gene057119:CDS | 55.0% | |
| CAGTACGCAGAAGTGGGAAC+CGG | - | chr3.1:73658307-73658326 | None:intergenic | 55.0% | |
| CCAAGGGTTTGCAGATCACG+GGG | + | chr3.1:73657315-73657334 | MS.gene057119:CDS | 55.0% | |
| CGAGATCCAGTACGCAGAAG+TGG | - | chr3.1:73658314-73658333 | None:intergenic | 55.0% | |
| GAAAAGGGTCCAGGTCTCTG+AGG | - | chr3.1:73657839-73657858 | None:intergenic | 55.0% | |
| TCAGTTGGGGAGACCATGGT+TGG | + | chr3.1:73657481-73657500 | MS.gene057119:intron | 55.0% | |
| TGTGAGGTTGGCACCAACCA+TGG | - | chr3.1:73657497-73657516 | None:intergenic | 55.0% | |
| ! | TTCGTGGCTCAGAAGGGTAC+TGG | - | chr3.1:73658522-73658541 | None:intergenic | 55.0% |
| !! | TGGCTCAGAAGGGTACTGGT+AGG | - | chr3.1:73658518-73658537 | None:intergenic | 55.0% |
| CCCCGTGATCTGCAAACCCT+TGG | - | chr3.1:73657318-73657337 | None:intergenic | 60.0% | |
| CGCAGAAGTGGGAACCGGTA+CGG | - | chr3.1:73658302-73658321 | None:intergenic | 60.0% | |
| CGGTTCCCACTTCTGCGTAC+TGG | + | chr3.1:73658305-73658324 | MS.gene057119:CDS | 60.0% | |
| ! | GGGGCGTTCCCAACAGTCAT+TGG | + | chr3.1:73657336-73657355 | MS.gene057119:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73655504 | 73658693 | 73655504 | ID=MS.gene057119 |
| chr3.1 | mRNA | 73655504 | 73658693 | 73655504 | ID=MS.gene057119.t1;Parent=MS.gene057119 |
| chr3.1 | exon | 73655504 | 73655608 | 73655504 | ID=MS.gene057119.t1.exon1;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73655504 | 73655608 | 73655504 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| chr3.1 | exon | 73655761 | 73655843 | 73655761 | ID=MS.gene057119.t1.exon2;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73655761 | 73655843 | 73655761 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| chr3.1 | exon | 73655943 | 73656093 | 73655943 | ID=MS.gene057119.t1.exon3;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73655943 | 73656093 | 73655943 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| chr3.1 | exon | 73657301 | 73657400 | 73657301 | ID=MS.gene057119.t1.exon4;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73657301 | 73657400 | 73657301 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| chr3.1 | exon | 73657485 | 73657577 | 73657485 | ID=MS.gene057119.t1.exon5;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73657485 | 73657577 | 73657485 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| chr3.1 | exon | 73657673 | 73657718 | 73657673 | ID=MS.gene057119.t1.exon6;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73657673 | 73657718 | 73657673 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| chr3.1 | exon | 73657805 | 73657890 | 73657805 | ID=MS.gene057119.t1.exon7;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73657805 | 73657890 | 73657805 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| chr3.1 | exon | 73658282 | 73658427 | 73658282 | ID=MS.gene057119.t1.exon8;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73658282 | 73658427 | 73658282 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| chr3.1 | exon | 73658523 | 73658693 | 73658523 | ID=MS.gene057119.t1.exon9;Parent=MS.gene057119.t1 |
| chr3.1 | CDS | 73658523 | 73658693 | 73658523 | ID=cds.MS.gene057119.t1;Parent=MS.gene057119.t1 |
| Gene Sequence |
| Protein sequence |
