Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020401.t1 | RHN59613.1 | 99.1 | 115 | 1 | 0 | 1 | 115 | 32 | 146 | 6.60E-61 | 243 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020401.t1 | Q1RMP0 | 38.2 | 110 | 67 | 1 | 7 | 115 | 13 | 122 | 1.9e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020401.t1 | G7JQD3 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 4.8e-61 | 243.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020401 | MS.gene064140 | PPI |
| MS.gene020401 | MS.gene030166 | PPI |
| MS.gene26516 | MS.gene020401 | PPI |
| MS.gene26777 | MS.gene020401 | PPI |
| MS.gene43180 | MS.gene020401 | PPI |
| MS.gene020401 | MS.gene97308 | PPI |
| MS.gene020401 | MS.gene047813 | PPI |
| MS.gene020401 | MS.gene39636 | PPI |
| MS.gene022098 | MS.gene020401 | PPI |
| MS.gene020401 | MS.gene68633 | PPI |
| MS.gene053492 | MS.gene020401 | PPI |
| MS.gene020401 | MS.gene95440 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020401.t1 | MTR_3g102420 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 7.30e-83 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020401.t1 | AT3G25940 | 61.739 | 115 | 41 | 1 | 3 | 114 | 4 | 118 | 6.76e-45 | 142 |
| MS.gene020401.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene020401.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene020401.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene020401.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene020401.t1 | AT1G20065 | 56.000 | 50 | 22 | 0 | 3 | 52 | 4 | 53 | 1.69e-12 | 58.9 |
Find 0 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATGTGAAAATAAAATT+TGG | + | 51443:59608-59627 | MS.gene020401:intron | 15.0% |
| !! | TATATATGGAAATAAACATT+AGG | + | 51443:59921-59940 | MS.gene020401:intron | 15.0% |
| !!! | ACATTTTTTACAACTTAATA+GGG | - | 51443:60094-60113 | None:intergenic | 15.0% |
| !!! | ATTCACAAATTATTGATTAT+TGG | + | 51443:62601-62620 | MS.gene020401:intron | 15.0% |
| !!! | TACATTTTTTACAACTTAAT+AGG | - | 51443:60095-60114 | None:intergenic | 15.0% |
| !!! | TGTTTTTATGTTAATGATAA+TGG | + | 51443:60157-60176 | MS.gene020401:intron | 15.0% |
| !! | ATTTAATGACATGATCTTTA+AGG | + | 51443:62737-62756 | MS.gene020401:intron | 20.0% |
| !! | CAAATAACAACACATATATA+TGG | + | 51443:59907-59926 | MS.gene020401:intron | 20.0% |
| !! | GGATATAACATGTTTAAATT+GGG | - | 51443:60611-60630 | None:intergenic | 20.0% |
| !! | TAAATATAACAGAGCTAATA+TGG | - | 51443:62366-62385 | None:intergenic | 20.0% |
| !! | TAACGATAAATCATTCTTAT+CGG | - | 51443:61200-61219 | None:intergenic | 20.0% |
| !! | TATGATTCATCAGTTAAAAT+AGG | + | 51443:60350-60369 | MS.gene020401:intron | 20.0% |
| !! | TGGATATAACATGTTTAAAT+TGG | - | 51443:60612-60631 | None:intergenic | 20.0% |
| !!! | AAATAAGACTATTTTATCAG+TGG | - | 51443:59995-60014 | None:intergenic | 20.0% |
| !!! | AATAAGACTATTTTATCAGT+GGG | - | 51443:59994-60013 | None:intergenic | 20.0% |
| !!! | AGAAGTATGAATGAATAATT+TGG | + | 51443:62500-62519 | MS.gene020401:intron | 20.0% |
| !!! | CATTTTTTACAACTTAATAG+GGG | - | 51443:60093-60112 | None:intergenic | 20.0% |
| !!! | TCCTTTTCATTATTTTTTCT+GGG | - | 51443:61028-61047 | None:intergenic | 20.0% |
| !!! | TTCCTTTTCATTATTTTTTC+TGG | - | 51443:61029-61048 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTTTCTCTACAA+TGG | + | 51443:61799-61818 | MS.gene020401:intron | 20.0% |
| ! | AAAACCAAGTGTAACATAAA+GGG | + | 51443:59437-59456 | MS.gene020401:CDS | 25.0% |
| ! | AAATCAAGATATCGTTTACT+TGG | - | 51443:62440-62459 | None:intergenic | 25.0% |
| ! | AACGATAAATCATTCTTATC+GGG | - | 51443:61199-61218 | None:intergenic | 25.0% |
| ! | AATAATGAAAAGGAAACTAC+CGG | + | 51443:61034-61053 | MS.gene020401:intron | 25.0% |
| ! | AGTGATATAATCATAGGATA+GGG | - | 51443:60636-60655 | None:intergenic | 25.0% |
| ! | ATGACAATTGGAAAAGAATT+TGG | - | 51443:61935-61954 | None:intergenic | 25.0% |
| ! | ATTCAGTTAGGACTTATAAT+GGG | - | 51443:60501-60520 | None:intergenic | 25.0% |
| ! | GAAAATAAAATTTGGTCTGT+AGG | + | 51443:59616-59635 | MS.gene020401:intron | 25.0% |
| ! | GAACATAGTGATATAATCAT+AGG | - | 51443:60642-60661 | None:intergenic | 25.0% |
| ! | GATTTGTCTTCAATTAATTG+AGG | + | 51443:60015-60034 | MS.gene020401:intron | 25.0% |
| ! | TAGTGATATAATCATAGGAT+AGG | - | 51443:60637-60656 | None:intergenic | 25.0% |
| ! | TGTCATTAAATACATATTGC+AGG | - | 51443:62728-62747 | None:intergenic | 25.0% |
| ! | TGTTAAGTTTGTAGCTTAAA+TGG | + | 51443:59536-59555 | MS.gene020401:intron | 25.0% |
| ! | TTGTCTTCTTCAGATATTAA+AGG | + | 51443:60525-60544 | MS.gene020401:intron | 25.0% |
| ! | TTTAATATCTGAAGAAGACA+AGG | - | 51443:60526-60545 | None:intergenic | 25.0% |
| !! | AATCTTGATTTGAATTTCAC+TGG | + | 51443:62082-62101 | MS.gene020401:intron | 25.0% |
| !! | ATCAGCAATTTTATAATCCA+CGG | + | 51443:62199-62218 | MS.gene020401:intron | 25.0% |
| !! | ATCTTGATTTGAATTTCACT+GGG | + | 51443:62083-62102 | MS.gene020401:intron | 25.0% |
| !! | TAGATTTCTTCTCTATTTTC+TGG | + | 51443:60819-60838 | MS.gene020401:intron | 25.0% |
| !!! | AGTGAATCAAAATTTCTAGT+TGG | + | 51443:59576-59595 | MS.gene020401:intron | 25.0% |
| !!! | ATAAACATTAGGTGTTTTTG+TGG | + | 51443:59932-59951 | MS.gene020401:intron | 25.0% |
| !!! | ATTTTGATATTGAAAGAGCA+AGG | + | 51443:59674-59693 | MS.gene020401:intron | 25.0% |
| !!! | CAAATTGAAAGAGTATCATA+TGG | - | 51443:61513-61532 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGGGATACAAGA+GGG | + | 51443:60996-61015 | MS.gene020401:intron | 25.0% |
| !!! | TTTTTTTTTTGGGATACAAG+AGG | + | 51443:60995-61014 | MS.gene020401:intron | 25.0% |
| AACAAGACATGTGAAAAATG+TGG | + | 51443:62816-62835 | MS.gene020401:CDS | 30.0% | |
| AATACTCATGATAACTGCTT+GGG | + | 51443:61299-61318 | MS.gene020401:intron | 30.0% | |
| AATTGTTTACTGCATATGCA+AGG | - | 51443:60428-60447 | None:intergenic | 30.0% | |
| ACAATTGGAAAAGAATTTGG+AGG | - | 51443:61932-61951 | None:intergenic | 30.0% | |
| ATATAACAGAGCTAATATGG+AGG | - | 51443:62363-62382 | None:intergenic | 30.0% | |
| ATATAATCATAGGATAGGGA+TGG | - | 51443:60632-60651 | None:intergenic | 30.0% | |
| ATATATAAGCACAATGCCAA+GGG | + | 51443:59880-59899 | MS.gene020401:intron | 30.0% | |
| ATATCACTATGTTCTATCAC+TGG | + | 51443:60648-60667 | MS.gene020401:intron | 30.0% | |
| CAAAACCAAGTGTAACATAA+AGG | + | 51443:59436-59455 | MS.gene020401:CDS | 30.0% | |
| CATTCAGTTAGGACTTATAA+TGG | - | 51443:60502-60521 | None:intergenic | 30.0% | |
| GCAGAAAATTCAGTAACTAA+TGG | - | 51443:61238-61257 | None:intergenic | 30.0% | |
| GCCCAGAAAAAATAATGAAA+AGG | + | 51443:61024-61043 | MS.gene020401:intron | 30.0% | |
| TAATACCTGTCTGGTATAAA+AGG | - | 51443:62856-62875 | None:intergenic | 30.0% | |
| TAATACTCATGATAACTGCT+TGG | + | 51443:61298-61317 | MS.gene020401:intron | 30.0% | |
| TATATGTACCTAAGTCATAG+CGG | - | 51443:60943-60962 | None:intergenic | 30.0% | |
| TATCTTGATTTACTTTGTCG+TGG | + | 51443:62449-62468 | MS.gene020401:intron | 30.0% | |
| TCAGTTAAAATAGGCTTCTA+TGG | + | 51443:60359-60378 | MS.gene020401:intron | 30.0% | |
| TCTCTACAATGGATACAATA+TGG | + | 51443:61810-61829 | MS.gene020401:intron | 30.0% | |
| TGATATCAAAATCCTAACCT+AGG | - | 51443:62542-62561 | None:intergenic | 30.0% | |
| TGGATGATATATGATAAGAG+TGG | - | 51443:60876-60895 | None:intergenic | 30.0% | |
| TTCCTAATTTCAGATGAGAT+CGG | + | 51443:62948-62967 | MS.gene020401:intron | 30.0% | |
| TTGAAATATCAACCTAGGTT+AGG | + | 51443:62527-62546 | MS.gene020401:intron | 30.0% | |
| TTTGACTCAAGTTTGAATAC+TGG | + | 51443:59701-59720 | MS.gene020401:intron | 30.0% | |
| ! | AAACTAGCTTCAAATTAGAC+TGG | - | 51443:62901-62920 | None:intergenic | 30.0% |
| !! | ACCTAGGTTGATATTTCAAA+AGG | - | 51443:62526-62545 | None:intergenic | 30.0% |
| !! | TGGTAATGGAATGATTACAA+TGG | - | 51443:62246-62265 | None:intergenic | 30.0% |
| !! | TGTTGTTGTTGTTTGTTTAC+AGG | + | 51443:62791-62810 | MS.gene020401:intron | 30.0% |
| !!! | TCATTATTTTTTCTGGGCTT+AGG | - | 51443:61022-61041 | None:intergenic | 30.0% |
| AAAAAGCTCTTAACTCTCTC+AGG | + | 51443:61897-61916 | MS.gene020401:intron | 35.0% | |
| AACTACCGGTAAACTAAAAG+AGG | + | 51443:61048-61067 | MS.gene020401:intron | 35.0% | |
| AAGAACCACATTCAGTCAAA+TGG | + | 51443:61737-61756 | MS.gene020401:intron | 35.0% | |
| AAGATATCGTTTACTTGGCT+GGG | - | 51443:62435-62454 | None:intergenic | 35.0% | |
| AAGTTACACAATTTCTGCTG+AGG | + | 51443:60557-60576 | MS.gene020401:CDS | 35.0% | |
| AATGATCCTTGTGTACTTTG+TGG | + | 51443:62626-62645 | MS.gene020401:intron | 35.0% | |
| AATGGGAAAGTAATTAGCAG+TGG | - | 51443:61643-61662 | None:intergenic | 35.0% | |
| ACATGTGAAAAATGTGGTCA+TGG | + | 51443:62822-62841 | MS.gene020401:CDS | 35.0% | |
| ACTTCTCTCCATCTGTTAAT+TGG | + | 51443:61539-61558 | MS.gene020401:intron | 35.0% | |
| AGTACTTGTTCTCTGTTATG+TGG | - | 51443:61978-61997 | None:intergenic | 35.0% | |
| ATGGAATGATTACAATGGCT+TGG | - | 51443:62241-62260 | None:intergenic | 35.0% | |
| ATGTGGTTCTTACAAGCATA+AGG | - | 51443:61728-61747 | None:intergenic | 35.0% | |
| ATTGTGACTCTGTTCAAGAA+GGG | - | 51443:60852-60871 | None:intergenic | 35.0% | |
| CATATATAAGCACAATGCCA+AGG | + | 51443:59879-59898 | MS.gene020401:intron | 35.0% | |
| CGATCTAATTGAAGAACAGA+AGG | + | 51443:62679-62698 | MS.gene020401:CDS | 35.0% | |
| CTATGGACAGAAATGACAAT+TGG | - | 51443:61947-61966 | None:intergenic | 35.0% | |
| CTATGGTGTAAAGTGATGAA+AGG | - | 51443:62389-62408 | None:intergenic | 35.0% | |
| CTTCTCTCCATCTGTTAATT+GGG | + | 51443:61540-61559 | MS.gene020401:intron | 35.0% | |
| GATCATGGAAAAATGCACTA+TGG | - | 51443:62406-62425 | None:intergenic | 35.0% | |
| GCTAGTATTTCATACTCCTT+AGG | + | 51443:60217-60236 | MS.gene020401:intron | 35.0% | |
| GCTGATATGAATTTATGTCC+AGG | - | 51443:62029-62048 | None:intergenic | 35.0% | |
| GGAATGACCAAATGATTGAT+TGG | - | 51443:62112-62131 | None:intergenic | 35.0% | |
| TAATCCAGAATTTAGTCTGG+AGG | - | 51443:59757-59776 | None:intergenic | 35.0% | |
| TACTCATATTGAGCGAAGTT+TGG | + | 51443:62275-62294 | MS.gene020401:intron | 35.0% | |
| TATATAAGCACAATGCCAAG+GGG | + | 51443:59881-59900 | MS.gene020401:intron | 35.0% | |
| TATTGTGACTCTGTTCAAGA+AGG | - | 51443:60853-60872 | None:intergenic | 35.0% | |
| TGGTAATCCAGAATTTAGTC+TGG | - | 51443:59760-59779 | None:intergenic | 35.0% | |
| TGTACCCTTTATGTTACACT+TGG | - | 51443:59444-59463 | None:intergenic | 35.0% | |
| TGTGATTCATGTCATGTGTA+AGG | + | 51443:60291-60310 | MS.gene020401:intron | 35.0% | |
| TTACATCATCAAGATACCTC+TGG | + | 51443:61082-61101 | MS.gene020401:intron | 35.0% | |
| TTGATTTACTTTGTCGTGGT+GGG | + | 51443:62453-62472 | MS.gene020401:intron | 35.0% | |
| TTTCAAGCCCAATTAACAGA+TGG | - | 51443:61550-61569 | None:intergenic | 35.0% | |
| TTTGACAGCATTCTCATTGA+CGG | - | 51443:61695-61714 | None:intergenic | 35.0% | |
| ! | AAACACACTAGCATTGAACA+TGG | - | 51443:60896-60915 | None:intergenic | 35.0% |
| ! | AGAGAGTTAAGAGCTTTTTG+TGG | - | 51443:61896-61915 | None:intergenic | 35.0% |
| ! | ATAGGCTTCTATGGTGTTTT+TGG | + | 51443:60368-60387 | MS.gene020401:intron | 35.0% |
| ! | CAATATGAGTATCGTTCTGT+TGG | - | 51443:62266-62285 | None:intergenic | 35.0% |
| !! | AAAGAGTATCATATGGCTCA+AGG | - | 51443:61506-61525 | None:intergenic | 35.0% |
| !! | AAGAGTATCATATGGCTCAA+GGG | - | 51443:61505-61524 | None:intergenic | 35.0% |
| !! | AGTATTGCTCTAAAGAGTCA+AGG | - | 51443:60046-60065 | None:intergenic | 35.0% |
| !! | CATTAGCTTGTCATCAACTT+TGG | - | 51443:61607-61626 | None:intergenic | 35.0% |
| !! | GAGGTATCTTGATGATGTAA+AGG | - | 51443:61082-61101 | None:intergenic | 35.0% |
| !! | TGTTGTTATTTGTTACCCCT+TGG | - | 51443:59899-59918 | None:intergenic | 35.0% |
| !!! | CATTAGTTTTTAAGCTCCCA+TGG | + | 51443:61862-61881 | MS.gene020401:intron | 35.0% |
| !!! | GCCTTTTGAAATATCAACCT+AGG | + | 51443:62522-62541 | MS.gene020401:intron | 35.0% |
| !!! | TTACACTTGGTTTTGCACAA+GGG | - | 51443:59431-59450 | None:intergenic | 35.0% |
| AAAGTGTGTGTTAGTGCCAA+TGG | - | 51443:61273-61292 | None:intergenic | 40.0% | |
| AACACACAGATGTCTTGTGA+AGG | - | 51443:60138-60157 | None:intergenic | 40.0% | |
| ACGTGAATTGCACAGTTGAA+TGG | - | 51443:61661-61680 | None:intergenic | 40.0% | |
| ATCCTTGTGTACTTTGTGGT+TGG | + | 51443:62630-62649 | MS.gene020401:intron | 40.0% | |
| ATTAGCAGTGGAGAGACTAT+TGG | - | 51443:61631-61650 | None:intergenic | 40.0% | |
| ATTGTGGAAGACTATGGTGA+GGG | - | 51443:62306-62325 | None:intergenic | 40.0% | |
| ATTTCATACTCCTTAGGTGC+AGG | + | 51443:60223-60242 | MS.gene020401:intron | 40.0% | |
| CAACATGCGTAATCAGTTGA+GGG | - | 51443:59407-59426 | None:intergenic | 40.0% | |
| CAAGATATCGTTTACTTGGC+TGG | - | 51443:62436-62455 | None:intergenic | 40.0% | |
| CACAACAGGTTCATATCAGT+TGG | - | 51443:61455-61474 | None:intergenic | 40.0% | |
| CGTGAATTGCACAGTTGAAT+GGG | - | 51443:61660-61679 | None:intergenic | 40.0% | |
| CTAATTTCAGATGAGATCGG+CGG | + | 51443:62951-62970 | MS.gene020401:intron | 40.0% | |
| CTTACCTCCAGACTAAATTC+TGG | + | 51443:59750-59769 | MS.gene020401:intron | 40.0% | |
| CTTGATTTACTTTGTCGTGG+TGG | + | 51443:62452-62471 | MS.gene020401:intron | 40.0% | |
| GAAGACAAGGACATTCAGTT+AGG | - | 51443:60513-60532 | None:intergenic | 40.0% | |
| GAAGTCTCATAATACCTGTC+TGG | - | 51443:62865-62884 | None:intergenic | 40.0% | |
| GACACTTTGCACTTTCTGTT+TGG | - | 51443:59816-59835 | None:intergenic | 40.0% | |
| GATTGATCAAGGATTCAAGG+CGG | - | 51443:61343-61362 | None:intergenic | 40.0% | |
| GGGTTGGGTAGAATTGAATA+GGG | - | 51443:61418-61437 | None:intergenic | 40.0% | |
| GGTGATTGATCAAGGATTCA+AGG | - | 51443:61346-61365 | None:intergenic | 40.0% | |
| GTTATGTGGTCATGCTTCTA+TGG | - | 51443:61964-61983 | None:intergenic | 40.0% | |
| TACCTCTGGCTAATCTGATT+AGG | + | 51443:61096-61115 | MS.gene020401:intron | 40.0% | |
| TGCATATGCAAGGACAGTAA+CGG | - | 51443:60418-60437 | None:intergenic | 40.0% | |
| TGGAAAAGAATTTGGAGGCT+GGG | - | 51443:61927-61946 | None:intergenic | 40.0% | |
| TGGGCAACCAATCAATCATT+TGG | + | 51443:62102-62121 | MS.gene020401:intron | 40.0% | |
| TGGGTAGAATTGAATAGGGA+TGG | - | 51443:61414-61433 | None:intergenic | 40.0% | |
| TTAGCAGTGGAGAGACTATT+GGG | - | 51443:61630-61649 | None:intergenic | 40.0% | |
| TTATGTCCAGGAGATGTGTT+TGG | - | 51443:62017-62036 | None:intergenic | 40.0% | |
| TTCTGCATTGTGGAAGACTA+TGG | - | 51443:62312-62331 | None:intergenic | 40.0% | |
| TTGACAGCATTCTCATTGAC+GGG | - | 51443:61694-61713 | None:intergenic | 40.0% | |
| TTGGAAAAGAATTTGGAGGC+TGG | - | 51443:61928-61947 | None:intergenic | 40.0% | |
| TTTCATACTCCTTAGGTGCA+GGG | + | 51443:60224-60243 | MS.gene020401:intron | 40.0% | |
| ! | ACAGAAGGTGCAATTGTCTA+AGG | + | 51443:62694-62713 | MS.gene020401:CDS | 40.0% |
| ! | ACTTGCCATTTGACTGAATG+TGG | - | 51443:61745-61764 | None:intergenic | 40.0% |
| ! | CAATGGCTTGGAATCATAGT+TGG | - | 51443:62229-62248 | None:intergenic | 40.0% |
| ! | GAGTATCGTTCTGTTGGTAA+TGG | - | 51443:62260-62279 | None:intergenic | 40.0% |
| ! | TTTCTGTTCTGTCACTTGTG+TGG | + | 51443:59365-59384 | MS.gene020401:CDS | 40.0% |
| !! | ACTGAAACTTGCTGCAGATT+TGG | + | 51443:62164-62183 | MS.gene020401:intron | 40.0% |
| !! | CTTGTCATCAACTTTGGAGT+TGG | - | 51443:61601-61620 | None:intergenic | 40.0% |
| !! | TAGTTTTTAAGCTCCCATGG+AGG | + | 51443:61865-61884 | MS.gene020401:intron | 40.0% |
| !! | TCACTGGCTTATAGTTCCTA+CGG | + | 51443:60664-60683 | MS.gene020401:intron | 40.0% |
| !!! | AGCTTTGGAGAGTTTTGCTT+GGG | - | 51443:61377-61396 | None:intergenic | 40.0% |
| !!! | CCACTCCTCTTTTAGTTTAC+CGG | - | 51443:61056-61075 | None:intergenic | 40.0% |
| !!! | GTTACACTTGGTTTTGCACA+AGG | - | 51443:59432-59451 | None:intergenic | 40.0% |
| !!! | TACACTTGGTTTTGCACAAG+GGG | - | 51443:59430-59449 | None:intergenic | 40.0% |
| AAACTGCCAAACACATCTCC+TGG | + | 51443:62008-62027 | MS.gene020401:intron | 45.0% | |
| AACCACTGCACACTTTGCAA+AGG | + | 51443:60723-60742 | MS.gene020401:intron | 45.0% | |
| AATTCTACCCAACCCGTCAA+AGG | + | 51443:61423-61442 | MS.gene020401:intron | 45.0% | |
| AGTAACTAATGGAGCGTGAG+TGG | - | 51443:61227-61246 | None:intergenic | 45.0% | |
| AGTTGGAAACCTCCTTTGAC+GGG | - | 51443:61438-61457 | None:intergenic | 45.0% | |
| AGTTTCAGTAGCAGCAGGAT+TGG | - | 51443:62153-62172 | None:intergenic | 45.0% | |
| ATCCTTTGCAAAGTGTGCAG+TGG | - | 51443:60728-60747 | None:intergenic | 45.0% | |
| ATGTACCTAAGTCATAGCGG+AGG | - | 51443:60940-60959 | None:intergenic | 45.0% | |
| CAGGATATCAGAAGGGAACT+TGG | + | 51443:62653-62672 | MS.gene020401:intron | 45.0% | |
| CAGTTGGAAACCTCCTTTGA+CGG | - | 51443:61439-61458 | None:intergenic | 45.0% | |
| CATTGTGGAAGACTATGGTG+AGG | - | 51443:62307-62326 | None:intergenic | 45.0% | |
| CCGGTAAACTAAAAGAGGAG+TGG | + | 51443:61053-61072 | MS.gene020401:intron | 45.0% | |
| CCTGAAACTGATGACCACAT+CGG | - | 51443:63008-63027 | None:intergenic | 45.0% | |
| CTGAAACTGATGACCACATC+GGG | - | 51443:63007-63026 | None:intergenic | 45.0% | |
| CTGCAGATGGTGATTGATCA+AGG | - | 51443:61354-61373 | None:intergenic | 45.0% | |
| CTTGTGTGGAACAATGCTCA+CGG | + | 51443:59379-59398 | MS.gene020401:CDS | 45.0% | |
| GAAAAGAATTTGGAGGCTGG+GGG | - | 51443:61925-61944 | None:intergenic | 45.0% | |
| GAATCATAGTTGGATTGCCG+TGG | - | 51443:62219-62238 | None:intergenic | 45.0% | |
| GCAACATGCGTAATCAGTTG+AGG | - | 51443:59408-59427 | None:intergenic | 45.0% | |
| GGAAAAGAATTTGGAGGCTG+GGG | - | 51443:61926-61945 | None:intergenic | 45.0% | |
| GTAACTAATGGAGCGTGAGT+GGG | - | 51443:61226-61245 | None:intergenic | 45.0% | |
| TACCAGAGTGCAATTCGTCA+GGG | + | 51443:59775-59794 | MS.gene020401:intron | 45.0% | |
| TGACAGCATTCTCATTGACG+GGG | - | 51443:61693-61712 | None:intergenic | 45.0% | |
| TGCCAACCACAAAGTACACA+AGG | - | 51443:62635-62654 | None:intergenic | 45.0% | |
| TGGTTGGCAGGATATCAGAA+GGG | + | 51443:62646-62665 | MS.gene020401:intron | 45.0% | |
| TGTGTGTTAGTGCCAATGGT+TGG | - | 51443:61269-61288 | None:intergenic | 45.0% | |
| TTACCAGAGTGCAATTCGTC+AGG | + | 51443:59774-59793 | MS.gene020401:intron | 45.0% | |
| TTCATACTCCTTAGGTGCAG+GGG | + | 51443:60225-60244 | MS.gene020401:intron | 45.0% | |
| TTGGCTGGGAACATAGATCA+TGG | - | 51443:62421-62440 | None:intergenic | 45.0% | |
| TTGTGTACTTTGTGGTTGGC+AGG | + | 51443:62634-62653 | MS.gene020401:intron | 45.0% | |
| ! | AGCTGCCTTTTATACCAGAC+AGG | + | 51443:62848-62867 | MS.gene020401:CDS | 45.0% |
| ! | CGCCGATCTCATCTGAAATT+AGG | - | 51443:62953-62972 | None:intergenic | 45.0% |
| ! | CGGGTTGGGTAGAATTGAAT+AGG | - | 51443:61419-61438 | None:intergenic | 45.0% |
| ! | GTCCTAATCAGATTAGCCAG+AGG | - | 51443:61101-61120 | None:intergenic | 45.0% |
| ! | TACTTTGTCGTGGTGGGATA+TGG | + | 51443:62459-62478 | MS.gene020401:intron | 45.0% |
| ! | TGGTGGATGCAAGTGGAAAT+CGG | - | 51443:62133-62152 | None:intergenic | 45.0% |
| !! | GAAACTTGCTGCAGATTTGG+TGG | + | 51443:62167-62186 | MS.gene020401:intron | 45.0% |
| !! | TTTTGTGGCTTGTCCTCCAT+GGG | - | 51443:61881-61900 | None:intergenic | 45.0% |
| !! | TTTTTGTGGCTTGTCCTCCA+TGG | - | 51443:61882-61901 | None:intergenic | 45.0% |
| !!! | GAGCTTTGGAGAGTTTTGCT+TGG | - | 51443:61378-61397 | None:intergenic | 45.0% |
| !!! | GTATTTATATTTTTTTTTTT+GGG | + | 51443:60985-61004 | MS.gene020401:intron | 5.0% |
| !!! | TGTATTTATATTTTTTTTTT+TGG | + | 51443:60984-61003 | MS.gene020401:intron | 5.0% |
| AATAGGGATGGAGCCAGCAT+AGG | - | 51443:61402-61421 | None:intergenic | 50.0% | |
| AGATGAGATCGGCGGATGAA+GGG | + | 51443:62959-62978 | MS.gene020401:intron | 50.0% | |
| AGGGCTGAAGCTGTGATCAA+TGG | - | 51443:61486-61505 | None:intergenic | 50.0% | |
| ATCCCTGACGAATTGCACTC+TGG | - | 51443:59780-59799 | None:intergenic | 50.0% | |
| CAGCAAGTTTCAGTAGCAGC+AGG | - | 51443:62158-62177 | None:intergenic | 50.0% | |
| CCGATGTGGTCATCAGTTTC+AGG | + | 51443:63005-63024 | MS.gene020401:CDS | 50.0% | |
| CTGAAGCTGTGATCAATGGC+AGG | - | 51443:61482-61501 | None:intergenic | 50.0% | |
| GAGTGCAATTCGTCAGGGAT+CGG | + | 51443:59780-59799 | MS.gene020401:intron | 50.0% | |
| GTGGTTGGCAGGATATCAGA+AGG | + | 51443:62645-62664 | MS.gene020401:intron | 50.0% | |
| TCATATCAGCCCCTAACTCC+TGG | + | 51443:62039-62058 | MS.gene020401:intron | 50.0% | |
| TGATCAAGGATTCAAGGCGG+TGG | - | 51443:61340-61359 | None:intergenic | 50.0% | |
| TTCAGTAGCAGCAGGATTGG+TGG | - | 51443:62150-62169 | None:intergenic | 50.0% | |
| TTCTACACATGCACCCGATG+TGG | + | 51443:62991-63010 | MS.gene020401:CDS | 50.0% | |
| ! | AGTTTTGCTTGGGCTGCAGA+TGG | - | 51443:61367-61386 | None:intergenic | 50.0% |
| ! | CAGCAGCTGATTCTGCATTG+TGG | - | 51443:62322-62341 | None:intergenic | 50.0% |
| ! | CTGCACTAGTCTCCAACCAT+TGG | + | 51443:61254-61273 | MS.gene020401:intron | 50.0% |
| ! | GTGGGCGTTGCTTCAATACA+TGG | - | 51443:59976-59995 | None:intergenic | 50.0% |
| ! | TACCTAAGTCATAGCGGAGG+TGG | - | 51443:60937-60956 | None:intergenic | 50.0% |
| !! | GAAACCTCCTTTGACGGGTT+GGG | - | 51443:61433-61452 | None:intergenic | 50.0% |
| !! | GCGGATGGACTTGCTAATGT+TGG | - | 51443:61162-61181 | None:intergenic | 50.0% |
| ACACCTAGTCACTCAGCCGT+AGG | - | 51443:60683-60702 | None:intergenic | 55.0% | |
| AGCAAGTCCATCCGCACACA+TGG | + | 51443:61167-61186 | MS.gene020401:intron | 55.0% | |
| ATCCATTCTGCCTCCACACC+AGG | - | 51443:62060-62079 | None:intergenic | 55.0% | |
| CAATGGCAGGCATGCACAAC+AGG | - | 51443:61469-61488 | None:intergenic | 55.0% | |
| CAGATGAGATCGGCGGATGA+AGG | + | 51443:62958-62977 | MS.gene020401:intron | 55.0% | |
| CAGCATTCTCATTGACGGGG+TGG | - | 51443:61690-61709 | None:intergenic | 55.0% | |
| CAGTTGTACCCCTGCACCTA+AGG | - | 51443:60236-60255 | None:intergenic | 55.0% | |
| CGGCTGAGTGACTAGGTGTT+TGG | + | 51443:60684-60703 | MS.gene020401:intron | 55.0% | |
| GCAATTCGTCAGGGATCGGA+GGG | + | 51443:59784-59803 | MS.gene020401:intron | 55.0% | |
| GGAAGACTATGGTGAGGGTG+TGG | - | 51443:62301-62320 | None:intergenic | 55.0% | |
| GTCCACCTCCGCTATGACTT+AGG | + | 51443:60932-60951 | MS.gene020401:intron | 55.0% | |
| GTTCCTACGGCTGAGTGACT+AGG | + | 51443:60677-60696 | MS.gene020401:intron | 55.0% | |
| TCTACCCAACCCGTCAAAGG+AGG | + | 51443:61426-61445 | MS.gene020401:intron | 55.0% | |
| TCTCCAAAGCTCGCCTATGC+TGG | + | 51443:61386-61405 | MS.gene020401:intron | 55.0% | |
| TGCAATTCGTCAGGGATCGG+AGG | + | 51443:59783-59802 | MS.gene020401:intron | 55.0% | |
| TGCCTCCACACCAGGAGTTA+GGG | - | 51443:62052-62071 | None:intergenic | 55.0% | |
| ! | GCAGGATTGGTGGATGCAAG+TGG | - | 51443:62140-62159 | None:intergenic | 55.0% |
| ! | GGAAACCTCCTTTGACGGGT+TGG | - | 51443:61434-61453 | None:intergenic | 55.0% |
| CTCCTGGTGTGGAGGCAGAA+TGG | + | 51443:62055-62074 | MS.gene020401:intron | 60.0% | |
| CTGCCTCCACACCAGGAGTT+AGG | - | 51443:62053-62072 | None:intergenic | 60.0% | |
| GAAGCGACCATGTGTGCGGA+TGG | - | 51443:61177-61196 | None:intergenic | 60.0% | |
| GAGCCAGCATAGGCGAGCTT+TGG | - | 51443:61392-61411 | None:intergenic | 60.0% | |
| GCCTCCACACCAGGAGTTAG+GGG | - | 51443:62051-62070 | None:intergenic | 60.0% | |
| TCAGCCCCTAACTCCTGGTG+TGG | + | 51443:62044-62063 | MS.gene020401:intron | 60.0% | |
| TCGGGAAGCGACCATGTGTG+CGG | - | 51443:61181-61200 | None:intergenic | 60.0% | |
| GCCCCTAACTCCTGGTGTGG+AGG | + | 51443:62047-62066 | MS.gene020401:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51443 | gene | 59344 | 63035 | 59344 | ID=MS.gene020401 |
| 51443 | mRNA | 59344 | 63035 | 59344 | ID=MS.gene020401.t1;Parent=MS.gene020401 |
| 51443 | exon | 59344 | 59458 | 59344 | ID=MS.gene020401.t1.exon1;Parent=MS.gene020401.t1 |
| 51443 | CDS | 59344 | 59458 | 59344 | ID=cds.MS.gene020401.t1;Parent=MS.gene020401.t1 |
| 51443 | exon | 60538 | 60578 | 60538 | ID=MS.gene020401.t1.exon2;Parent=MS.gene020401.t1 |
| 51443 | CDS | 60538 | 60578 | 60538 | ID=cds.MS.gene020401.t1;Parent=MS.gene020401.t1 |
| 51443 | exon | 62656 | 62715 | 62656 | ID=MS.gene020401.t1.exon3;Parent=MS.gene020401.t1 |
| 51443 | CDS | 62656 | 62715 | 62656 | ID=cds.MS.gene020401.t1;Parent=MS.gene020401.t1 |
| 51443 | exon | 62813 | 62869 | 62813 | ID=MS.gene020401.t1.exon4;Parent=MS.gene020401.t1 |
| 51443 | CDS | 62813 | 62869 | 62813 | ID=cds.MS.gene020401.t1;Parent=MS.gene020401.t1 |
| 51443 | exon | 62961 | 63035 | 62961 | ID=MS.gene020401.t1.exon5;Parent=MS.gene020401.t1 |
| 51443 | CDS | 62961 | 63035 | 62961 | ID=cds.MS.gene020401.t1;Parent=MS.gene020401.t1 |
| Gene Sequence |
| Protein sequence |
