Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020531.t1 | XP_003630870.1 | 96.2 | 962 | 33 | 2 | 1 | 959 | 1 | 961 | 0.00E+00 | 1693.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020531.t1 | Q9C744 | 55.2 | 859 | 310 | 7 | 4 | 854 | 3 | 794 | 9.6e-247 | 854.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020531.t1 | G7L9R3 | 96.2 | 962 | 33 | 2 | 1 | 959 | 1 | 961 | 0.0e+00 | 1693.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82003 | MS.gene020531 | PPI |
| MS.gene011991 | MS.gene020531 | PPI |
| MS.gene036995 | MS.gene020531 | PPI |
| MS.gene060477 | MS.gene020531 | PPI |
| MS.gene08515 | MS.gene020531 | PPI |
| MS.gene84170 | MS.gene020531 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020531.t1 | MTR_8g104380 | 96.881 | 962 | 26 | 2 | 1 | 959 | 1 | 961 | 0.0 | 1898 |
| MS.gene020531.t1 | MTR_5g034780 | 23.832 | 428 | 279 | 9 | 18 | 412 | 10 | 423 | 1.41e-27 | 120 |
| MS.gene020531.t1 | MTR_2g084610 | 21.805 | 532 | 354 | 16 | 36 | 522 | 29 | 543 | 3.51e-20 | 97.1 |
| MS.gene020531.t1 | MTR_8g072250 | 24.740 | 384 | 262 | 8 | 20 | 379 | 27 | 407 | 8.79e-18 | 89.4 |
| MS.gene020531.t1 | MTR_8g063690 | 30.909 | 165 | 111 | 2 | 18 | 180 | 10 | 173 | 9.81e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020531.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene020531.t1 | AT1G48760 | 39.474 | 266 | 121 | 7 | 608 | 854 | 550 | 794 | 5.73e-40 | 160 |
| MS.gene020531.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene020531.t1 | AT1G48760 | 39.474 | 266 | 121 | 7 | 608 | 854 | 550 | 794 | 5.73e-40 | 160 |
| MS.gene020531.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene020531.t1 | AT1G48760 | 39.474 | 266 | 121 | 7 | 608 | 854 | 550 | 794 | 5.73e-40 | 160 |
| MS.gene020531.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 4.95e-29 | 125 |
| MS.gene020531.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 5.37e-29 | 125 |
| MS.gene020531.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 2.97e-26 | 116 |
| MS.gene020531.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 2.97e-26 | 116 |
| MS.gene020531.t1 | AT1G23900 | 22.892 | 498 | 322 | 10 | 32 | 492 | 14 | 486 | 1.22e-25 | 114 |
| MS.gene020531.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene020531.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene020531.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene020531.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene020531.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene020531.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene020531.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 6.90e-22 | 102 |
| MS.gene020531.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 6.90e-22 | 102 |
| MS.gene020531.t1 | AT1G31730 | 23.451 | 452 | 302 | 10 | 61 | 481 | 72 | 510 | 1.04e-21 | 102 |
| MS.gene020531.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 920 | 1088 | 3.54e-11 | 68.2 |
| MS.gene020531.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 869 | 1037 | 4.26e-11 | 67.8 |
| MS.gene020531.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 870 | 1038 | 4.44e-11 | 67.8 |
Find 0 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTCAATTCGATTTAAT+AGG | - | 57352:31015-31034 | MS.gene020531:intergenic | 15.0% |
| !!! | AATCGAATTGAATTAATTTT+TGG | + | 57352:31019-31038 | MS.gene020531:CDS | 15.0% |
| !! | ATATTAAAATTGAGTCTTTG+CGG | + | 57352:30213-30232 | MS.gene020531:CDS | 20.0% |
| !! | ATTTATATTACTGTTTGACT+TGG | - | 57352:31530-31549 | MS.gene020531:intergenic | 20.0% |
| !!! | TAAAGTTTTAAGTTTTTGTC+TGG | + | 57352:30715-30734 | MS.gene020531:CDS | 20.0% |
| !!! | TTTATATTACTGTTTGACTT+GGG | - | 57352:31529-31548 | MS.gene020531:intergenic | 20.0% |
| ! | AAAATCTCATTGCAAAATTC+TGG | - | 57352:30317-30336 | MS.gene020531:intergenic | 25.0% |
| ! | AACCAAAATCCTATAAAACT+CGG | - | 57352:29841-29860 | MS.gene020531:intergenic | 25.0% |
| ! | GAATAATTGGGTTCTTATTA+AGG | + | 57352:29869-29888 | MS.gene020531:CDS | 25.0% |
| ! | GATAACAAATTGAAGATATC+AGG | - | 57352:29618-29637 | MS.gene020531:intergenic | 25.0% |
| !! | AGAATTTTGCAATGAGATTT+TGG | + | 57352:30316-30335 | MS.gene020531:CDS | 25.0% |
| !! | AGATTTTCTTTCATTTCAGA+TGG | - | 57352:31826-31845 | MS.gene020531:intergenic | 25.0% |
| !! | GAATTTTGCAATGAGATTTT+GGG | + | 57352:30317-30336 | MS.gene020531:CDS | 25.0% |
| !! | GGTTGATTCTAAGAATAATT+GGG | + | 57352:29857-29876 | MS.gene020531:CDS | 25.0% |
| !! | TCTGAAATGAAAGAAAATCT+TGG | + | 57352:31826-31845 | MS.gene020531:CDS | 25.0% |
| !! | TGGTTGATTCTAAGAATAAT+TGG | + | 57352:29856-29875 | MS.gene020531:CDS | 25.0% |
| !!! | AGATCATTGTTGATTTTGAT+TGG | + | 57352:30375-30394 | MS.gene020531:CDS | 25.0% |
| !!! | TAGGGTTTGTTTTAAAAGAT+TGG | + | 57352:29713-29732 | MS.gene020531:CDS | 25.0% |
| !!! | TTATATTACTGTTTGACTTG+GGG | - | 57352:31528-31547 | MS.gene020531:intergenic | 25.0% |
| !!! | TTATTTTTGCTACTCGAATT+GGG | - | 57352:31880-31899 | MS.gene020531:intergenic | 25.0% |
| !!! | TTTATTTTTGCTACTCGAAT+TGG | - | 57352:31881-31900 | MS.gene020531:intergenic | 25.0% |
| AAACCAAGATACCTAAGATT+AGG | - | 57352:30101-30120 | MS.gene020531:intergenic | 30.0% | |
| AAGTACCTTCATCTTTATCA+AGG | - | 57352:30748-30767 | MS.gene020531:intergenic | 30.0% | |
| AAGTGAAGCATGAAAATGAT+TGG | - | 57352:29541-29560 | MS.gene020531:intergenic | 30.0% | |
| ACCAAAATCCTATAAAACTC+GGG | - | 57352:29840-29859 | MS.gene020531:intergenic | 30.0% | |
| ATAAAAGATGTTCTTGGAAG+TGG | + | 57352:31715-31734 | MS.gene020531:CDS | 30.0% | |
| ATGTAAACTGCTCTTATTGA+CGG | - | 57352:30683-30702 | MS.gene020531:intergenic | 30.0% | |
| CATATCTTCATCAGAAGATT+CGG | - | 57352:30915-30934 | MS.gene020531:intergenic | 30.0% | |
| CTTCTAATATGCTCACAAAT+AGG | - | 57352:29957-29976 | MS.gene020531:intergenic | 30.0% | |
| GACGATTTAAAAGCAATATG+TGG | + | 57352:31286-31305 | MS.gene020531:CDS | 30.0% | |
| GAGAATCAGCTTATTGATAT+TGG | + | 57352:30458-30477 | MS.gene020531:CDS | 30.0% | |
| GATTAAATCTTTGGATGATG+AGG | + | 57352:30184-30203 | MS.gene020531:CDS | 30.0% | |
| GCAAAAATAAAGAGAGAAGA+CGG | + | 57352:31890-31909 | MS.gene020531:CDS | 30.0% | |
| GTAAAGAGAAGATTGTTGAA+GGG | + | 57352:31917-31936 | MS.gene020531:CDS | 30.0% | |
| GTGTAAAACGAAATTGATGA+AGG | - | 57352:31325-31344 | MS.gene020531:intergenic | 30.0% | |
| TAAAGAGAAGATTGTTGAAG+GGG | + | 57352:31918-31937 | MS.gene020531:CDS | 30.0% | |
| TGATATTGGTATGAGAGTTA+AGG | + | 57352:30472-30491 | MS.gene020531:CDS | 30.0% | |
| TGCTTTAATCAACTGTACAA+AGG | - | 57352:31101-31120 | MS.gene020531:intergenic | 30.0% | |
| TGTTACCTTGATAAAGATGA+AGG | + | 57352:30740-30759 | MS.gene020531:CDS | 30.0% | |
| TTCTTCATCTTCTTCAATCA+TGG | + | 57352:29176-29195 | MS.gene020531:CDS | 30.0% | |
| TTGATAAGTCATCAACTAAG+CGG | + | 57352:31770-31789 | MS.gene020531:CDS | 30.0% | |
| ! | ACTTCCAAGAACATCTTTTA+TGG | - | 57352:31716-31735 | MS.gene020531:intergenic | 30.0% |
| ! | GATTGGTATGTATCTCTTTT+GGG | + | 57352:30392-30411 | MS.gene020531:CDS | 30.0% |
| ! | GCAGAAATAATTGATAACTC+TGG | + | 57352:31118-31137 | MS.gene020531:CDS | 30.0% |
| ! | TCATCAATTTCGTTTTACAC+AGG | + | 57352:31325-31344 | MS.gene020531:CDS | 30.0% |
| ! | TGATTGGTATGTATCTCTTT+TGG | + | 57352:30391-30410 | MS.gene020531:CDS | 30.0% |
| ! | TTCTAAAAAATGACGAGTCA+GGG | + | 57352:31392-31411 | MS.gene020531:CDS | 30.0% |
| ! | TTTGAAGATTTTTGCTAGGT+TGG | + | 57352:29893-29912 | MS.gene020531:CDS | 30.0% |
| !! | CAATTTGTTATCGTCTTCTA+GGG | + | 57352:29626-29645 | MS.gene020531:CDS | 30.0% |
| !! | TCAATTTGTTATCGTCTTCT+AGG | + | 57352:29625-29644 | MS.gene020531:CDS | 30.0% |
| !! | TTAGTTGATGACTTATCAAG+AGG | - | 57352:31769-31788 | MS.gene020531:intergenic | 30.0% |
| !!! | AGGTTTTGAAGATTTTTGCT+AGG | + | 57352:29889-29908 | MS.gene020531:CDS | 30.0% |
| AAGATCTTTACGAAGCTGAT+TGG | - | 57352:29511-29530 | MS.gene020531:intergenic | 35.0% | |
| AAGATGATTCTGTGAGAAGT+TGG | - | 57352:29251-29270 | MS.gene020531:intergenic | 35.0% | |
| AATGACAGCAATAACAACCT+TGG | - | 57352:29763-29782 | MS.gene020531:intergenic | 35.0% | |
| ATAAGTATCCTGATGCTGTT+AGG | + | 57352:29694-29713 | MS.gene020531:CDS | 35.0% | |
| ATCGTTGAAGGAAATTGAAG+CGG | - | 57352:29463-29482 | MS.gene020531:intergenic | 35.0% | |
| ATGACAGCAATAACAACCTT+GGG | - | 57352:29762-29781 | MS.gene020531:intergenic | 35.0% | |
| ATGATTCCTCATTGCCAAAA+GGG | + | 57352:30425-30444 | MS.gene020531:CDS | 35.0% | |
| GATCCTAATCTTAGGTATCT+TGG | + | 57352:30095-30114 | MS.gene020531:CDS | 35.0% | |
| GGATGCTGTGATTAAATCTT+TGG | + | 57352:30175-30194 | MS.gene020531:CDS | 35.0% | |
| GGTAAAGAGAAGATTGTTGA+AGG | + | 57352:31916-31935 | MS.gene020531:CDS | 35.0% | |
| TAAGTATCCTGATGCTGTTA+GGG | + | 57352:29695-29714 | MS.gene020531:CDS | 35.0% | |
| TCAACTTATGAACAGGATGA+GGG | + | 57352:30866-30885 | MS.gene020531:CDS | 35.0% | |
| TGAAGGTTCAACTTATGAAC+AGG | + | 57352:30859-30878 | MS.gene020531:CDS | 35.0% | |
| TGTGAGCATATTAGAAGATC+TGG | + | 57352:29960-29979 | MS.gene020531:CDS | 35.0% | |
| TTCAACTTATGAACAGGATG+AGG | + | 57352:30865-30884 | MS.gene020531:CDS | 35.0% | |
| TTCGAAAATTAGGGAGTTGT+TGG | + | 57352:30064-30083 | MS.gene020531:CDS | 35.0% | |
| TTGATCAGGATCCTAATCTT+AGG | + | 57352:30087-30106 | MS.gene020531:CDS | 35.0% | |
| TTGATTGATCCTGCATTGTT+GGG | + | 57352:30533-30552 | MS.gene020531:CDS | 35.0% | |
| TTTCTGTGAACTTAGTTCCA+AGG | + | 57352:29788-29807 | MS.gene020531:CDS | 35.0% | |
| ! | AAGGTTGTTATTGCTGTCAT+TGG | + | 57352:29762-29781 | MS.gene020531:CDS | 35.0% |
| ! | AATATAATCCATGCCGCTTA+CGG | - | 57352:31450-31469 | MS.gene020531:intergenic | 35.0% |
| ! | ATGCTAGATTACAGCTTGTT+CGG | + | 57352:30495-30514 | MS.gene020531:CDS | 35.0% |
| ! | CTTCTAAAAAATGACGAGTC+AGG | + | 57352:31391-31410 | MS.gene020531:CDS | 35.0% |
| ! | TCAATTTCGTTTTACACAGG+AGG | + | 57352:31328-31347 | MS.gene020531:CDS | 35.0% |
| ! | TCTCAATTTCTTCACCCTTT+TGG | - | 57352:30442-30461 | MS.gene020531:intergenic | 35.0% |
| ! | TCTTTAAGAGCTAATCCATC+TGG | - | 57352:31259-31278 | MS.gene020531:intergenic | 35.0% |
| ! | TTTAGAAAGTTCTGATCCCA+AGG | + | 57352:29743-29762 | MS.gene020531:CDS | 35.0% |
| !! | AGTCACTTCTTTTGAAGAAG+AGG | + | 57352:31584-31603 | MS.gene020531:CDS | 35.0% |
| !! | GATTACTTTGAGACAAACTC+GGG | - | 57352:31747-31766 | MS.gene020531:intergenic | 35.0% |
| !! | GGATTACTTTGAGACAAACT+CGG | - | 57352:31748-31767 | MS.gene020531:intergenic | 35.0% |
| !!! | AAGCTATTGCTGTTGTTTTG+AGG | + | 57352:29664-29683 | MS.gene020531:CDS | 35.0% |
| !!! | AGCTATTGCTGTTGTTTTGA+GGG | + | 57352:29665-29684 | MS.gene020531:CDS | 35.0% |
| !!! | CGTCTTCTAGGGTTTTTATT+AGG | + | 57352:29637-29656 | MS.gene020531:CDS | 35.0% |
| AAACAAACCCTAACAGCATC+AGG | - | 57352:29705-29724 | MS.gene020531:intergenic | 40.0% | |
| AAATAAAAGGCCAGAGCCAA+GGG | + | 57352:31672-31691 | MS.gene020531:CDS | 40.0% | |
| AACCACGTTTAAGGGTGAAT+TGG | - | 57352:32013-32032 | MS.gene020531:intergenic | 40.0% | |
| AAGTCATCAACTAAGCGGAA+AGG | + | 57352:31775-31794 | MS.gene020531:CDS | 40.0% | |
| AATAAAGAGAGAAGACGGAG+AGG | + | 57352:31895-31914 | MS.gene020531:CDS | 40.0% | |
| AGTCATCAACTAAGCGGAAA+GGG | + | 57352:31776-31795 | MS.gene020531:CDS | 40.0% | |
| AGTTGGCGGTTTCGAAAATT+AGG | + | 57352:30054-30073 | MS.gene020531:CDS | 40.0% | |
| ATAAACATTCCTACCACACG+TGG | - | 57352:30354-30373 | MS.gene020531:intergenic | 40.0% | |
| ATCTTCATCAGAAGATTCGG+CGG | - | 57352:30912-30931 | MS.gene020531:intergenic | 40.0% | |
| CTCTTCCTTCACAAACGAAT+TGG | + | 57352:29429-29448 | MS.gene020531:CDS | 40.0% | |
| GAAATAGTGGCAACATGTGA+AGG | + | 57352:30842-30861 | MS.gene020531:CDS | 40.0% | |
| GATGATTCCTCATTGCCAAA+AGG | + | 57352:30424-30443 | MS.gene020531:CDS | 40.0% | |
| GGATTTGATGAGATCGTCTA+GGG | - | 57352:29220-29239 | MS.gene020531:intergenic | 40.0% | |
| GGTAACCAATTCGTTTGTGA+AGG | - | 57352:29437-29456 | MS.gene020531:intergenic | 40.0% | |
| GTTGATTGATCCTGCATTGT+TGG | + | 57352:30532-30551 | MS.gene020531:CDS | 40.0% | |
| GTTGGCGGTTTCGAAAATTA+GGG | + | 57352:30055-30074 | MS.gene020531:CDS | 40.0% | |
| GTTTGGGAAACCACGTTTAA+GGG | - | 57352:32021-32040 | MS.gene020531:intergenic | 40.0% | |
| TAAACTGCTCTTATTGACGG+AGG | - | 57352:30680-30699 | MS.gene020531:intergenic | 40.0% | |
| TACACATTACCCAACAATGC+AGG | - | 57352:30545-30564 | MS.gene020531:intergenic | 40.0% | |
| TCACATGTTGCCACTATTTC+AGG | - | 57352:30842-30861 | MS.gene020531:intergenic | 40.0% | |
| TGATAACTCTGGTCAGAATG+TGG | + | 57352:31129-31148 | MS.gene020531:CDS | 40.0% | |
| TGGATTTGATGAGATCGTCT+AGG | - | 57352:29221-29240 | MS.gene020531:intergenic | 40.0% | |
| TGGGTAATGTGTACTTGCAT+AGG | + | 57352:30552-30571 | MS.gene020531:CDS | 40.0% | |
| TGTTTGGGAAACCACGTTTA+AGG | - | 57352:32022-32041 | MS.gene020531:intergenic | 40.0% | |
| TTCCTTCAACGATTCAACAC+CGG | + | 57352:29470-29489 | MS.gene020531:CDS | 40.0% | |
| TTTGCTGGGGGATAATCATT+TGG | - | 57352:31502-31521 | MS.gene020531:intergenic | 40.0% | |
| TTTGTGAAGGAAGAGAGAAG+AGG | - | 57352:29424-29443 | MS.gene020531:intergenic | 40.0% | |
| ! | AGAGCATCAATGAGTTCAAG+TGG | - | 57352:30632-30651 | MS.gene020531:intergenic | 40.0% |
| ! | CAATGTGGTGGAGATATCTA+GGG | + | 57352:30262-30281 | MS.gene020531:CDS | 40.0% |
| ! | CTACTCGAATTGGGATTTTC+AGG | - | 57352:31871-31890 | MS.gene020531:intergenic | 40.0% |
| ! | GGTGCCATAAAAGATGTTCT+TGG | + | 57352:31709-31728 | MS.gene020531:CDS | 40.0% |
| ! | TCTCAGTCTTATCTGAAGCA+AGG | - | 57352:31474-31493 | MS.gene020531:intergenic | 40.0% |
| ! | TCTGAAGTAGTGCCAAATTG+AGG | - | 57352:31355-31374 | MS.gene020531:intergenic | 40.0% |
| ! | TGCTAGATTACAGCTTGTTC+GGG | + | 57352:30496-30515 | MS.gene020531:CDS | 40.0% |
| !! | CAATTTTAACCACGTGTGGT+AGG | + | 57352:30342-30361 | MS.gene020531:CDS | 40.0% |
| !! | GAATTGGGATTTTCAGGATC+AGG | - | 57352:31865-31884 | MS.gene020531:intergenic | 40.0% |
| !! | GCCCGAGTTTTATAGGATTT+TGG | + | 57352:29836-29855 | MS.gene020531:CDS | 40.0% |
| !! | GGTTCAATTTTAACCACGTG+TGG | + | 57352:30338-30357 | MS.gene020531:CDS | 40.0% |
| !! | TTGGTGATGAGAAGAAGAAC+CGG | - | 57352:29492-29511 | MS.gene020531:intergenic | 40.0% |
| !!! | GTAGGTGAGTTTTTGAAGTG+CGG | - | 57352:29340-29359 | MS.gene020531:intergenic | 40.0% |
| !!! | TTTTTGAAGTGCGGTGGATT+TGG | - | 57352:29331-29350 | MS.gene020531:intergenic | 40.0% |
| AAAAAGAGTAGCCACCGTCA+TGG | + | 57352:31964-31983 | MS.gene020531:CDS | 45.0% | |
| AAGATACGATCTCGGATCCT+TGG | - | 57352:29808-29827 | MS.gene020531:intergenic | 45.0% | |
| AAGTGACTGCTCTGTCAACT+TGG | - | 57352:31572-31591 | MS.gene020531:intergenic | 45.0% | |
| AATCTCACCACTACAGGTCT+GGG | - | 57352:31625-31644 | MS.gene020531:intergenic | 45.0% | |
| ACAATCCTCTTCCCTAACCT+AGG | - | 57352:29930-29949 | MS.gene020531:intergenic | 45.0% | |
| AGCCAATTCACCCTTAAACG+TGG | + | 57352:32008-32027 | MS.gene020531:CDS | 45.0% | |
| AGGGGAAGAATCTGATCAGA+AGG | + | 57352:31936-31955 | MS.gene020531:CDS | 45.0% | |
| ATTCGGCGGTTGAATTCCTT+GGG | - | 57352:30898-30917 | MS.gene020531:intergenic | 45.0% | |
| CAAATAAAAGGCCAGAGCCA+AGG | + | 57352:31671-31690 | MS.gene020531:CDS | 45.0% | |
| CACTGAAGCTCCTGAAATAG+TGG | + | 57352:30829-30848 | MS.gene020531:CDS | 45.0% | |
| CAGCACCAGGTCCAAATAAA+AGG | + | 57352:31659-31678 | MS.gene020531:CDS | 45.0% | |
| CCAAGGGACAATTCTCTTTC+TGG | + | 57352:31688-31707 | MS.gene020531:CDS | 45.0% | |
| CCAGAAAGAGAATTGTCCCT+TGG | - | 57352:31691-31710 | MS.gene020531:intergenic | 45.0% | |
| CCAGTCTCAATAAGTGCACA+GGG | + | 57352:31220-31239 | MS.gene020531:CDS | 45.0% | |
| CCATGGAATCGACATGTCAT+GGG | + | 57352:29371-29390 | MS.gene020531:CDS | 45.0% | |
| CGGAAAGGGAAGAAGAAACT+AGG | + | 57352:31790-31809 | MS.gene020531:CDS | 45.0% | |
| GGAAGAGTTACTGTACCAGA+TGG | + | 57352:31241-31260 | MS.gene020531:CDS | 45.0% | |
| GGGGAAGAATCTGATCAGAA+GGG | + | 57352:31937-31956 | MS.gene020531:CDS | 45.0% | |
| GTAGTGGTGAGATTGGATGA+TGG | + | 57352:31631-31650 | MS.gene020531:CDS | 45.0% | |
| TACACAGGAGGTCCTCAATT+TGG | + | 57352:31340-31359 | MS.gene020531:CDS | 45.0% | |
| TATTGACGGAGGCAAGAGAT+TGG | - | 57352:30669-30688 | MS.gene020531:intergenic | 45.0% | |
| TCACGAGTCTGCTGTTAAGT+TGG | + | 57352:30037-30056 | MS.gene020531:CDS | 45.0% | |
| TCATCCAATCTCACCACTAC+AGG | - | 57352:31631-31650 | MS.gene020531:intergenic | 45.0% | |
| TCCAGTCTCAATAAGTGCAC+AGG | + | 57352:31219-31238 | MS.gene020531:CDS | 45.0% | |
| TCCATGGAATCGACATGTCA+TGG | + | 57352:29370-29389 | MS.gene020531:CDS | 45.0% | |
| TGAAGGAAATTGAAGCGGCA+TGG | - | 57352:29458-29477 | MS.gene020531:intergenic | 45.0% | |
| TGAGTCTTTGCGGTTGTTGA+TGG | + | 57352:30223-30242 | MS.gene020531:CDS | 45.0% | |
| TGGTTCACTGACAGCAAATC+AGG | + | 57352:31039-31058 | MS.gene020531:CDS | 45.0% | |
| TTCCCTAACCTAGGTTCCAA+AGG | - | 57352:29921-29940 | MS.gene020531:intergenic | 45.0% | |
| TTGATGCTCTTGTACAGCCT+CGG | + | 57352:30642-30661 | MS.gene020531:CDS | 45.0% | |
| ! | AACCGGTGTTGAATCGTTGA+AGG | - | 57352:29475-29494 | MS.gene020531:intergenic | 45.0% |
| ! | GATATTGTGTGCTGCTGCTT+GGG | + | 57352:30574-30593 | MS.gene020531:CDS | 45.0% |
| ! | GCAATGTGGTGGAGATATCT+AGG | + | 57352:30261-30280 | MS.gene020531:CDS | 45.0% |
| ! | TAGGGAGTTGTTGGTTGATC+AGG | + | 57352:30073-30092 | MS.gene020531:CDS | 45.0% |
| ! | TATGGTCTCTGAGAGCAATG+TGG | + | 57352:30247-30266 | MS.gene020531:CDS | 45.0% |
| ! | TCTTCACCCTTTTGGCAATG+AGG | - | 57352:30434-30453 | MS.gene020531:intergenic | 45.0% |
| !! | ACTTTGAGACAAACTCGGGT+TGG | - | 57352:31743-31762 | MS.gene020531:intergenic | 45.0% |
| !! | CTCCTTTGGAACCTAGGTTA+GGG | + | 57352:29916-29935 | MS.gene020531:CDS | 45.0% |
| !! | GGTGGATTTGGTTTGTGGAT+CGG | - | 57352:29319-29338 | MS.gene020531:intergenic | 45.0% |
| !! | TCTGGCCTTTTATTTGGACC+TGG | - | 57352:31667-31686 | MS.gene020531:intergenic | 45.0% |
| !! | TGACATGTCGATTCCATGGA+TGG | - | 57352:29370-29389 | MS.gene020531:intergenic | 45.0% |
| !! | TTGACTTGGGGTCATTTGCT+GGG | - | 57352:31516-31535 | MS.gene020531:intergenic | 45.0% |
| !! | TTTGACTTGGGGTCATTTGC+TGG | - | 57352:31517-31536 | MS.gene020531:intergenic | 45.0% |
| !! | TTTGCGGTTGTTGATGGCTA+TGG | + | 57352:30229-30248 | MS.gene020531:CDS | 45.0% |
| !! | TTTTGCTAGGTTGGCTCCTT+TGG | + | 57352:29902-29921 | MS.gene020531:CDS | 45.0% |
| !!! | CGCTTGTTTTTGAGTGTGTG+AGG | + | 57352:29991-30010 | MS.gene020531:CDS | 45.0% |
| !!! | CTTGGCTCTGGCCTTTTATT+TGG | - | 57352:31673-31692 | MS.gene020531:intergenic | 45.0% |
| !!! | GATGCTTTTTCCGTGGAACT+TGG | + | 57352:31196-31215 | MS.gene020531:CDS | 45.0% |
| AATGAAGCCCAGACCTGTAG+TGG | + | 57352:31615-31634 | MS.gene020531:CDS | 50.0% | |
| ACTCTGGTCAGAATGTGGAC+AGG | + | 57352:31134-31153 | MS.gene020531:CDS | 50.0% | |
| AGAGAATTGTCCCTTGGCTC+TGG | - | 57352:31685-31704 | MS.gene020531:intergenic | 50.0% | |
| AGCACTGCCCACAAATGCTT+CGG | - | 57352:30146-30165 | MS.gene020531:intergenic | 50.0% | |
| AGGACATTACCTCGACAACG+TGG | - | 57352:29404-29423 | MS.gene020531:intergenic | 50.0% | |
| CAATCTCACCACTACAGGTC+TGG | - | 57352:31626-31645 | MS.gene020531:intergenic | 50.0% | |
| CAGACCTGTAGTGGTGAGAT+TGG | + | 57352:31624-31643 | MS.gene020531:CDS | 50.0% | |
| CATTACCTCGACAACGTGGA+AGG | - | 57352:29400-29419 | MS.gene020531:intergenic | 50.0% | |
| CCCTGTGCACTTATTGAGAC+TGG | - | 57352:31223-31242 | MS.gene020531:intergenic | 50.0% | |
| CCTTGCTTGAACACCGTAAG+CGG | + | 57352:31434-31453 | MS.gene020531:CDS | 50.0% | |
| CTATAAAACTCGGGCGCCAA+CGG | - | 57352:29831-29850 | MS.gene020531:intergenic | 50.0% | |
| GAAGATGAAGAACCCGCCAT+TGG | - | 57352:29168-29187 | MS.gene020531:intergenic | 50.0% | |
| GATTCGGCGGTTGAATTCCT+TGG | - | 57352:30899-30918 | MS.gene020531:intergenic | 50.0% | |
| GCCAACGGAAGATACGATCT+CGG | - | 57352:29816-29835 | MS.gene020531:intergenic | 50.0% | |
| GTGGGCAGTGCTAGAGAATA+AGG | + | 57352:30154-30173 | MS.gene020531:CDS | 50.0% | |
| TCCGAGATCGTATCTTCCGT+TGG | + | 57352:29812-29831 | MS.gene020531:CDS | 50.0% | |
| TGAGACTGGACCAAGTTCCA+CGG | - | 57352:31209-31228 | MS.gene020531:intergenic | 50.0% | |
| TGGAACCTAGGTTAGGGAAG+AGG | + | 57352:29922-29941 | MS.gene020531:CDS | 50.0% | |
| TGTGAGAAGTTGGAGTCGCA+TGG | - | 57352:29241-29260 | MS.gene020531:intergenic | 50.0% | |
| ! | AGGATGAGGGCTTTAACCCA+AGG | + | 57352:30879-30898 | MS.gene020531:CDS | 50.0% |
| ! | GAGTTTTACGCCTGCCATGA+CGG | - | 57352:31981-32000 | MS.gene020531:intergenic | 50.0% |
| ! | GGATATTGTGTGCTGCTGCT+TGG | + | 57352:30573-30592 | MS.gene020531:CDS | 50.0% |
| ! | TGACTTGGGGTCATTTGCTG+GGG | - | 57352:31515-31534 | MS.gene020531:intergenic | 50.0% |
| ! | TGAGATCGTCTAGGGTTCGT+TGG | - | 57352:29212-29231 | MS.gene020531:intergenic | 50.0% |
| ! | TGCTACGCCGAAGCATTTGT+GGG | + | 57352:30136-30155 | MS.gene020531:CDS | 50.0% |
| ! | TTGCTACGCCGAAGCATTTG+TGG | + | 57352:30135-30154 | MS.gene020531:CDS | 50.0% |
| !! | AGTGCGGTGGATTTGGTTTG+TGG | - | 57352:29324-29343 | MS.gene020531:intergenic | 50.0% |
| !! | CATGTCGATTCCATGGATGG+AGG | - | 57352:29367-29386 | MS.gene020531:intergenic | 50.0% |
| !! | CCCATGACATGTCGATTCCA+TGG | - | 57352:29374-29393 | MS.gene020531:intergenic | 50.0% |
| !! | CGAGTCTGCTGTTAAGTTGG+CGG | + | 57352:30040-30059 | MS.gene020531:CDS | 50.0% |
| !! | GAAGGTACTTCATCCTCACG+TGG | + | 57352:30758-30777 | MS.gene020531:CDS | 50.0% |
| !! | GCTCCTTTGGAACCTAGGTT+AGG | + | 57352:29915-29934 | MS.gene020531:CDS | 50.0% |
| !! | GGATTTGGTTTGTGGATCGG+TGG | - | 57352:29316-29335 | MS.gene020531:intergenic | 50.0% |
| !! | GTTCCACGGAAAAAGCATCG+CGG | - | 57352:31195-31214 | MS.gene020531:intergenic | 50.0% |
| !!! | GGTGAGTTTTTGAAGTGCGG+TGG | - | 57352:29337-29356 | MS.gene020531:intergenic | 50.0% |
| ACCTACCTCTCCTCCATCCA+TGG | + | 57352:29354-29373 | MS.gene020531:CDS | 55.0% | |
| CCGCTTACGGTGTTCAAGCA+AGG | - | 57352:31437-31456 | MS.gene020531:intergenic | 55.0% | |
| CGATTCCATGGATGGAGGAG+AGG | - | 57352:29362-29381 | MS.gene020531:intergenic | 55.0% | |
| CTTGAACACCGTAAGCGGCA+TGG | + | 57352:31439-31458 | MS.gene020531:CDS | 55.0% | |
| GGTACTTCATCCTCACGTGG+TGG | + | 57352:30761-30780 | MS.gene020531:CDS | 55.0% | |
| TCCATGGATGGAGGAGAGGT+AGG | - | 57352:29358-29377 | MS.gene020531:intergenic | 55.0% | |
| ! | ATCCTCACGTGGTGGCGAAT+TGG | + | 57352:30769-30788 | MS.gene020531:CDS | 55.0% |
| ! | GACTTGGGGTCATTTGCTGG+GGG | - | 57352:31514-31533 | MS.gene020531:intergenic | 55.0% |
| ! | GGTCTCTGAGAGCAATGTGG+TGG | + | 57352:30250-30269 | MS.gene020531:CDS | 55.0% |
| ! | TTTTACGCCTGCCATGACGG+TGG | - | 57352:31978-31997 | MS.gene020531:intergenic | 55.0% |
| !! | CACGGAAAAAGCATCGCGGA+TGG | - | 57352:31191-31210 | MS.gene020531:intergenic | 55.0% |
| !! | CGTTGGCGCCCGAGTTTTAT+AGG | + | 57352:29829-29848 | MS.gene020531:CDS | 55.0% |
| !! | GATGATGGAGATGCAGCACC+AGG | + | 57352:31646-31665 | MS.gene020531:CDS | 55.0% |
| !! | GGTTGGCTCCTTTGGAACCT+AGG | + | 57352:29910-29929 | MS.gene020531:CDS | 55.0% |
| !!! | CATCCGCGATGCTTTTTCCG+TGG | + | 57352:31189-31208 | MS.gene020531:CDS | 55.0% |
| AGAGTAGCCACCGTCATGGC+AGG | + | 57352:31968-31987 | MS.gene020531:CDS | 60.0% | |
| AGCCAATTCGCCACCACGTG+AGG | - | 57352:30774-30793 | MS.gene020531:intergenic | 60.0% | |
| GGCTTCCTTCCACGTTGTCG+AGG | + | 57352:29392-29411 | MS.gene020531:CDS | 60.0% | |
| ! | CGTGGTGGCGAATTGGCTAG+CGG | + | 57352:30776-30795 | MS.gene020531:CDS | 60.0% |
| ! | GGAGGCAAGAGATTGGTCCG+AGG | - | 57352:30662-30681 | MS.gene020531:intergenic | 60.0% |
| ! | TGTGCTGCTGCTTGGGTTGC+TGG | + | 57352:30581-30600 | MS.gene020531:CDS | 60.0% |
| ATCACGCGCGAGGTCGAGAG+TGG | - | 57352:29589-29608 | MS.gene020531:intergenic | 65.0% | |
| CAGGAGTGAGATCACGCGCG+AGG | - | 57352:29599-29618 | MS.gene020531:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57352 | gene | 29168 | 32044 | 29168 | ID=MS.gene020531 |
| 57352 | mRNA | 29168 | 32044 | 29168 | ID=MS.gene020531.t1;Parent=MS.gene020531 |
| 57352 | exon | 29168 | 32044 | 29168 | ID=MS.gene020531.t1.exon1;Parent=MS.gene020531.t1 |
| 57352 | CDS | 29168 | 32044 | 29168 | ID=cds.MS.gene020531.t1;Parent=MS.gene020531.t1 |
| Gene Sequence |
| Protein sequence |
